RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17497
(806 letters)
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 82.6 bits (204), Expect = 8e-20
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 343 VKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWK 402
+KV P +I ++ FV GP E + M NP + FL + S +YYR K
Sbjct: 17 IKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRK 76
Query: 403 MYSILQGDQ 411
+ I +
Sbjct: 77 VAEIRKSGP 85
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 65
Score = 79.4 bits (196), Expect = 4e-19
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 344 KVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
KV P D L ++ F+ GP E + + N + FL++ S + YYR K+
Sbjct: 1 KVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKL 60
Query: 404 YSI 406
Sbjct: 61 DEF 63
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 144
Score = 78.6 bits (193), Expect = 1e-17
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 16/148 (10%)
Query: 466 LEDFLRNL----TPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYL 521
++DF L R + E+ A+ + I + +K+ Y
Sbjct: 9 VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMP--KQKLYAFYA 66
Query: 522 VSDILHNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAW 581
+ I N G S Y F LF ++ TY+ +++ + + + + +
Sbjct: 67 LDSICKNVG------SPYTIYFSRNLFNLYK---RTYLLVDNTTRTKLINMFKLWLNPND 117
Query: 582 EDWAVYPKDYLIKLQNVFLGLSDAVPLD 609
++ L K++ FL + A L+
Sbjct: 118 TGLPLFEGSALEKIEQ-FLIKASAAALE 144
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 73.2 bits (180), Expect = 6e-17
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 356 LIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPKE 414
++ + FV R GP FEA I EI+NP + FL N P H YYR K+ +G +
Sbjct: 5 IVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPN-DPYHAYYRHKVSEFKEGKAQEP 62
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 70.8 bits (173), Expect = 8e-16
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++ NLN TE+ L +F + G + S I ++ GFV + + ++AL
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 258 KYLNGKDVQSYEMKLGWGKSVPIPS 282
K L G V +++++ + P+
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKPA 85
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 69.2 bits (169), Expect = 5e-15
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 188 FDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAF 247
+ P +Y G + +T+Q + + F +G + I++ + FV F
Sbjct: 11 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---------KGYSFVRF 61
Query: 248 MNRKDGERALKYLNGKDVQSYEMKLGWGKSVP 279
+ A+ +NG ++ + +K WGK P
Sbjct: 62 STHESAAHAIVSVNGTTIEGHVVKCYWGKESP 93
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 66.9 bits (163), Expect = 2e-14
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TNLY+ NL IT+ QL IFG+YG I D+ R R FV + R++ +
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGS---IVQKNILRDKLTGRPRGVAFVRYNKREEAQE 63
Query: 256 ALKYLNGKDVQSYEMKL 272
A+ LN + L
Sbjct: 64 AISALNNVIPEGGSQPL 80
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 66.1 bits (161), Expect = 4e-14
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+LY+G+L+P +TE L E F GP+ SI++ R +V F D ERA
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM---ITRRSLGYAYVNFQQPADAERA 58
Query: 257 LKYLNGKDVQSYEMKLGWGK 276
L +N ++ +++ W +
Sbjct: 59 LDTMNFDVIKGKPVRIMWSQ 78
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 66.6 bits (162), Expect = 5e-14
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 7/113 (6%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
+G + + NL +T L +IF ++G + I + + + + +
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN-------QFQALLQYAD 54
Query: 250 RKDGERALKYLNGKDVQSYEMKLGWGKSVPIPSYPIYIPPKMLELTVPPPPSG 302
+ A L+G+++ + L S Y K + T P PSG
Sbjct: 55 PVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSG 107
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 64.8 bits (157), Expect = 2e-13
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 18/117 (15%)
Query: 191 GDPCTTNLYLGNLNPKITE-----QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
G ++ L N + + +F Y + + +
Sbjct: 1 GSSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF---------KRVRI 51
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVPIPSYPIYIPPKMLELTVPPPPSG 302
F N A L+ + EMKL + +++ I S + P P SG
Sbjct: 52 NFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPD----KSGPSSG 104
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 62.3 bits (151), Expect = 7e-13
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TNL + L +T+++L +F GP+ + +IM FV F + D +R
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYS---YGYAFVDFTSEMDSQR 59
Query: 256 ALKYLNGKDVQSYEMKLGWGK 276
A+K LNG V++ +K+ + +
Sbjct: 60 AIKVLNGITVRNKRLKVSYAR 80
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 61.5 bits (149), Expect = 2e-12
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
+ LY+GNL+ TE+Q+ E+F + G IK + D+ K FV + +R D E
Sbjct: 7 SCTLYVGNLSFYTTEEQIYELFSKSGD---IKKIIMGLDKMKKTACGFCFVEYYSRADAE 63
Query: 255 RALKYLNGKDVQSYEMKLGWGKS 277
A++Y+NG + ++ W
Sbjct: 64 NAMRYINGTRLDDRIIRTDWDAG 86
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 60.5 bits (146), Expect = 3e-12
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
G+ + DP L + L+ TE+ L E+F +YGP I + D++ R R FV
Sbjct: 1 GNRANPDPNCC-LGVFGLSLYTTERDLREVFSKYGP---IADVSIVYDQQSRRSRGFAFV 56
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMK 271
F N D + A + NG ++ ++
Sbjct: 57 YFENVDDAKEAKERANGMELDGRRIR 82
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 59.9 bits (145), Expect = 5e-12
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L + NL+ +++ + E+F +G L + + RS V F + D +A+
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRS----LGTADVHFERKADALKAM 58
Query: 258 KYLNGKDVQSYEMKLGWGKS 277
K NG + M + S
Sbjct: 59 KQYNGVPLDGRPMNIQLVTS 78
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 60.3 bits (146), Expect = 5e-12
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T+ + + N+ + ++++ E+F +G + P+ R GFV F+ ++D +
Sbjct: 8 TSKILVRNIPFQANQREIRELFSTFGE--LKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 255 RALKYL-NGKDVQSYEMKLGWGKS 277
+A L + + + L W S
Sbjct: 66 KAFNALCHSTHLYGRRLVLEWADS 89
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 60.1 bits (145), Expect = 5e-12
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
S NLY+ L +T+++L ++F +YG + + +I+ + R GF+ F
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ---VTGVSRGVGFIRFDK 57
Query: 250 RKDGERALKYLNGKDVQSYEMKL 272
R + E A+K LNG+ +
Sbjct: 58 RIEAEEAIKGLNGQKPSGATEPI 80
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 60.3 bits (146), Expect = 6e-12
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 184 TKGSFDSGDPCTTN--LYLGNLNPKIT-EQQLMEIFGRYGPLASIKIMWPRSDEEKARGR 240
+ GS DP + N +++GNLN + + + IF +YG + + +
Sbjct: 2 SSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH-----------K 50
Query: 241 NCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
FV ++N ++ A+ +G+ + + +
Sbjct: 51 GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAE 87
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 59.3 bits (143), Expect = 1e-11
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TNL + L +T+++ +FG G I+ D+ + GFV +++ KD E+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGE---IESCKLVRDKITGQSLGYGFVNYIDPKDAEK 59
Query: 256 ALKYLNGKDVQSYEMKLGWGK 276
A+ LNG +Q+ +K+ + +
Sbjct: 60 AINTLNGLRLQTKTIKVSYAR 80
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 57.7 bits (139), Expect = 4e-11
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFM 248
D G P T LY+GNL+ +TE ++++F + GP S K++ + FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN-----DPYCFVEFY 56
Query: 249 NRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+D AL +NG+ + E+K+ W +
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNWATT 85
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 58.1 bits (140), Expect = 4e-11
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
+Y+G L+ K++E L E+F + GP+ + + R + + GFV F++ +D +
Sbjct: 9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR---VTGQHQGYGFVEFLSEEDAD 65
Query: 255 RALKYLNGKDVQSYEMKLGWGKS 277
A+K ++ + +++ +
Sbjct: 66 YAIKIMDMIKLYGKPIRVNKASA 88
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 56.6 bits (136), Expect = 9e-11
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
N+++ NL+ I + L + F +G + S K++ + + GFV F ++ E
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-----GSKGYGFVHFETQEAAE 62
Query: 255 RALKYLNGKDVQSYEMKLGWGKS 277
RA++ +NG + ++ +G KS
Sbjct: 63 RAIEKMNGMLLNDRKVFVGRFKS 85
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 55.4 bits (133), Expect = 2e-10
Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L + + Q+ E+ +GPL + ++ + F +++ ++A+
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS---ATGLSKGYAFCEYVDINVTDQAI 60
Query: 258 KYLNGKDVQSYEMKLGWGKS 277
LNG + ++ +
Sbjct: 61 AGLNGMQLGDKKLLVQRASV 80
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 55.5 bits (133), Expect = 3e-10
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFM 248
SG + L++ NL+ +E+ L ++F YGPL+ + + + FV FM
Sbjct: 2 SSGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS---LTKKPKGFAFVTFM 58
Query: 249 NRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ +A ++G+ Q + +
Sbjct: 59 FPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 54.5 bits (131), Expect = 5e-10
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 354 LMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
L ++ +FV R G F +M KE N + FL Y+ +
Sbjct: 31 LDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQ-HSLFNYFTKLV 79
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 55.0 bits (132), Expect = 6e-10
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
LY+ NL KIT +++ +IFG+YGP+ I++ R +V + + D +
Sbjct: 7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET------RGTAYVVYEDIFDAK 60
Query: 255 RALKYLNGKDVQSYEMKLGWGKS 277
A +L+G +V + + + + +
Sbjct: 61 NACDHLSGFNVCNRYLVVLYYNA 83
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.7 bits (131), Expect = 8e-10
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
P NL++ +L + +Q L+++F +G + S K+ + + GFV++ N
Sbjct: 15 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN---LSKCFGFVSYDNPV 71
Query: 252 DGERALKYLNGKDVQSYEMKLGWGKS 277
+ A++ +NG + +K+ +S
Sbjct: 72 SAQAAIQSMNGFQIGMKRLKVQLKRS 97
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 54.0 bits (129), Expect = 8e-10
Identities = 16/80 (20%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+++GNL+P+I E+ L + F +G + + D ++G F+ F + + A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG--YAFINFASFDASDAAI 58
Query: 258 KYLNGKDVQSYEMKLGWGKS 277
+ +NG+ + + + + +
Sbjct: 59 EAMNGQYLCNRPITVSYAFK 78
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 53.8 bits (129), Expect = 1e-09
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+ L++GNL P ITE+++ ++F +YG + I + GF+ R E
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---------KGFGFIRLETRTLAEI 59
Query: 256 ALKYLNGKDVQSYEMKLGWGKS 277
A L+ ++ ++++ +
Sbjct: 60 AKVELDNMPLRGKQLRVRFACH 81
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 54.0 bits (129), Expect = 1e-09
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIM-----WPRSDEEKARGRNCGFVA 246
D + +Y+ LN +T L + F + G + K D+E + + V+
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 247 FMNRKDGERALKYLNGKDVQSYEMKLGWGKSVP 279
+ + + A+++ +GKD Q ++K+ + P
Sbjct: 65 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 97
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 53.1 bits (127), Expect = 2e-09
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 193 PCTTNLYLGNLNPKITEQQLM----EIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFM 248
P T +Y+ NLN KI + +L IF R+G + I + + R FV F
Sbjct: 2 PNHT-IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL------KMRGQAFVIFK 54
Query: 249 NRKDGERALKYLNGKDVQSYEMKLGWGKS 277
AL+ + G M++ + K+
Sbjct: 55 EVSSATNALRSMQGFPFYDKPMRIQYAKT 83
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 52.4 bits (125), Expect = 3e-09
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR 250
L++ N+ + + L ++FG++ KI+ + + GFV F N
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQF-----GKILDVEIIFNERGSKGFGFVTFENS 61
Query: 251 KDGERALKYLNGKDVQSYEMKLGWGKS 277
D +RA + L+G V+ ++++ +
Sbjct: 62 ADADRAREKLHGTVVEGRKIEVNNATA 88
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 52.4 bits (125), Expect = 3e-09
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
LY+G L ++ ++ L F +G I + D E + R FV F +D A+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGD---ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
Query: 258 KYLNGKDVQSYEMKLGWGK 276
+N ++ +++ K
Sbjct: 65 DNMNESELFGRTIRVNLAK 83
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.4 bits (125), Expect = 4e-09
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
+ + NL+ E L E+F +G ++ I + ++ + + F++F R+D
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS---KGFAFISFHRREDAA 64
Query: 255 RALKYLNGKDVQSYEMKLGWGK 276
RA+ ++G + + W K
Sbjct: 65 RAIAGVSGFGYDHLILNVEWAK 86
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 52.0 bits (124), Expect = 4e-09
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
SG P T + + N+ ++ ++++ F Y + + EK VAF +
Sbjct: 4 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK---YNEKGMPTGEAMVAFES 60
Query: 250 RKDGERALKYLNGKDVQSYEMKLGWG 275
R + A+ LN + + S ++KL G
Sbjct: 61 RDEATAAVIDLNDRPIGSRKVKLVLG 86
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 51.6 bits (123), Expect = 5e-09
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
L++ +++ + E ++ E F YG + +I + R + V + K
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFS---KGYALVEYETHKQALA 64
Query: 256 ALKYLNGKDVQSYEMKLGWGKS 277
A + LNG ++ +++ W
Sbjct: 65 AKEALNGAEIMGQTIQVDWCFV 86
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 50.8 bits (121), Expect = 8e-09
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
LY+ + +T L F +G + + + PR NC FV + + +
Sbjct: 5 GNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR---------NCAFVTYEKMESAD 53
Query: 255 RALKYLNGKDVQSYEMKLGWGKSVPI 280
+A+ LNG V+S ++K+ + P+
Sbjct: 54 QAVAELNGTQVESVQLKVNIARKQPM 79
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 50.7 bits (121), Expect = 9e-09
Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+++G L+P E+++ E FG +G + SI++ ++ R F+ F + ++ +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR---RGFCFITFKEEEPVKKIM 58
Query: 258 K----YLNGKDVQ 266
+ + +
Sbjct: 59 EKKYHNVGLSKCE 71
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 50.0 bits (119), Expect = 1e-08
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+++G L+ + T++ L E FG++G + +M R R GFV FM++ ++ L
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVL 59
Query: 258 KYLNGKDVQ 266
+ ++
Sbjct: 60 A-QSRHELD 67
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 50.1 bits (119), Expect = 2e-08
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
TT L++G L P + L F R+G + +I + + ++ + +
Sbjct: 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------DSFAYIQYESLDA 65
Query: 253 GERALKYLNGKDVQSYEMKL--GWGKSVP 279
+ A + G + + +L + KS P
Sbjct: 66 AQAACAKMRGFPLGGPDRRLRVDFAKSGP 94
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 49.6 bits (118), Expect = 2e-08
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR 250
G ++ +++G +TE +L E F +YG + + I P R FV F +
Sbjct: 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF--------RAFAFVTFADD 52
Query: 251 KDGERALKYLNGKDVQSYEMKLGWGKS 277
+ + ++ + + +
Sbjct: 53 QIAQSLCG--EDLIIKGISVHISNAEP 77
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.2 bits (119), Expect = 3e-08
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 187 SFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVA 246
S++ G+P LYL NL+P++TE+ L+ +F R+ I + R R F+
Sbjct: 11 SYNPGEP-NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQF---RMMTGRMRGQAFIT 66
Query: 247 FMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
F N++ +AL +NG + + + +GK+
Sbjct: 67 FPNKEIAWQALHLVNGYKLYGKILVIEFGKN 97
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 49.6 bits (118), Expect = 3e-08
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T++L + L K TEQ L E F +G + +++ D + + GFV F +
Sbjct: 8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK---DLKTGHSKGFGFVRFTEYETQV 64
Query: 255 RALKYLNGKD 264
+ + + D
Sbjct: 65 KVMSQRHMID 74
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 49.7 bits (118), Expect = 3e-08
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
L++G + ++++E + ++ S +K + R FV + + +
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLD-VIVYASAADKMKNRGFAFVEYESHRAAAM 60
Query: 256 ALKYLNGKDVQ 266
A + L +Q
Sbjct: 61 ARRKLMPGRIQ 71
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 49.4 bits (117), Expect = 4e-08
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRS--DEEKARGRNCGFVAFMNRKDGER 255
LY+GN+ ITE+ +M+ F L + + + +N F+ F + + +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 256 ALKYLNGKDVQSYEMKLGWGKSVPIPSYPIYIPP 289
A+ +G Q +K+ Y P
Sbjct: 64 AM-AFDGIIFQGQSLKIRRPHD--------YQPL 88
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.6 bits (118), Expect = 4e-08
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 179 IYQ--EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEK 236
IY+ + + S D +++ + + E+ E+ +YG + + + D
Sbjct: 9 IYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLV 68
Query: 237 ARGRNCGFVAFMNRKDGERALKYLNGKDV 265
+V F +D E+A+ LN +
Sbjct: 69 ----GNVYVKFRREEDAEKAVIDLNNRWF 93
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 49.3 bits (117), Expect = 5e-08
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
+ + G L ++ QL+ + + G + ++ + + F + ++ +
Sbjct: 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------KPYSFARYRTTEESK 70
Query: 255 RALKYLNGKDVQSYEMKLGWGKSVPI 280
RA LNGK E+ G+ + +
Sbjct: 71 RAYVTLNGK-----EVVDDLGQKITL 91
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 48.6 bits (115), Expect = 5e-08
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDG 253
CT L++ N P T++ + ++ + + R ++ +++D
Sbjct: 2 CT--LWMTNFPPSYTQRNIRDLLQDINV---VALSIRLPSLRFNTSRRFAYIDVTSKEDA 56
Query: 254 ERALKYLNGKDVQSYEMKLGWGK 276
++ LNG ++ Y +
Sbjct: 57 RYCVEKLNGLKIEGYTLVTKVSN 79
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 49.3 bits (117), Expect = 5e-08
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 192 DPCTT-------NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF 244
DPCT+ L NL+ ITE +L E+F + R + + + +
Sbjct: 6 DPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDA--------LEIRLVSQDGKSKGIAY 57
Query: 245 VAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ F + D E+ L+ G ++ + L +
Sbjct: 58 IEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 48.9 bits (116), Expect = 6e-08
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+Y+GNL P I + + ++F +YG + I + R FV F + +D E
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG------PPFAFVEFEDPRDAED 68
Query: 256 ALKYLNGKDVQSYEMKLGWGKS 277
A+ +G D Y +++ + +S
Sbjct: 69 AVYGRDGYDYDGYRLRVEFPRS 90
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 47.7 bits (113), Expect = 9e-08
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+++G L+ T++ L + F ++G + + D R R GFV F + ++ +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL---DPITGRSRGFGFVLFKESESVDKVM 58
Query: 258 K----YLNGKDVQ 266
LNGK +
Sbjct: 59 DQKEHKLNGKVID 71
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 48.6 bits (115), Expect = 9e-08
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
D T +++G L T+ L + F +G + ++ R + + R GFV +R
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR---QTGKSRGYGFVTMADRA 63
Query: 252 DGERALKYLNGK 263
ERA K N
Sbjct: 64 AAERACKDPNPI 75
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 48.1 bits (114), Expect = 9e-08
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
LY+ NL +E+ + + F P A ++ R+ FV F NR+D
Sbjct: 8 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAV 58
Query: 255 RALKYLNGKDVQSYEMKLGWGKSVP 279
A+K LNGK + +++ K V
Sbjct: 59 EAMKALNGKVLDGSPIEVTLAKPVD 83
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 48.2 bits (114), Expect = 2e-07
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 196 TNLYLGNLNP-KITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
+ L + NLNP ++T Q L +FG YG + +KI++ + + V + +
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQ 54
Query: 255 RALKYLNGKDVQSYEMKLGWGKSVPIP 281
A+ +LNG + +++ K +
Sbjct: 55 LAMSHLNGHKLHGKPIRITLSKHQNVQ 81
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 47.1 bits (111), Expect = 2e-07
Identities = 17/91 (18%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 188 FDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAF 247
F + P + L+L N+ P ++E+ L +F G + + + R +
Sbjct: 3 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-------RKMALIQM 55
Query: 248 MNRKDGERALKYLNGKDV-QSYEMKLGWGKS 277
+ ++ +AL L+ D+ +++ +++ + KS
Sbjct: 56 GSVEEAVQALIDLHNHDLGENHHLRVSFSKS 86
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 47.5 bits (112), Expect = 2e-07
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
+ GS +++ L + E L+E ++G + + +M +
Sbjct: 5 SSGSHHKVSVSPV-VHVRGLCESVVEADLVEALEKFGTICYVMMMPF---------KRQA 54
Query: 244 FVAFMNRKDGERALKYLNGKD--VQSYEMKLGWGKSVPI 280
V F N + + + + + + S I
Sbjct: 55 LVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 46.9 bits (110), Expect = 4e-07
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
GS S T + NL ++ E F R+G L + + V
Sbjct: 1 GSSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---------GITAIV 51
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVPIPSYP 284
F+ + +A ++L + L W + P
Sbjct: 52 EFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAP 90
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 46.3 bits (109), Expect = 5e-07
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TNLY+ NL + EQ+L + +G + S +I+ S R GF + + E
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG----TSRGVGFARMESTEKCEA 74
Query: 256 ALKYLNGKDVQSYEMKLGWGK 276
+ + NGK +++ +
Sbjct: 75 VIGHFNGKFIKTPPGVSAPTE 95
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 45.5 bits (107), Expect = 8e-07
Identities = 9/87 (10%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR 250
G ++ + + NL Q++ ++ Y FV +N
Sbjct: 1 GSSGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNK----------RTAFVTLLNG 50
Query: 251 KDGERALKYLNGKDVQSYEMKLGWGKS 277
+ + A++ + + ++ + +
Sbjct: 51 EQAQNAIQMFHQYSFRGKDLIVQLQPT 77
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 46.8 bits (110), Expect = 9e-07
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 167 YSEEAEPPSAIAIYQEETKGSFDSGDP-CTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
Y + A+ Q+ + + +P NL + + + E QL ++F RYGP I
Sbjct: 13 YGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGP---I 69
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ + D E + R GFV F + ++A+ LNG ++ + +K+ S
Sbjct: 70 ESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 45.2 bits (106), Expect = 1e-06
Identities = 12/78 (15%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 197 NLYLGNLNPKITEQQLMEIF---GRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDG 253
+++ L+ ++ + ++++ G++G + + I S +V ++ +D
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 254 ERALKYLNGKDVQSYEMK 271
RA++ +N V +K
Sbjct: 70 LRAIQCVNNVVVDGRTLK 87
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 44.4 bits (104), Expect = 1e-06
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
LY+ L P T+Q L+++ YG + S D+ + + GFV F + ++A+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVS---TKAILDKTTNKCKGYGFVDFDSPSAAQKAV 57
Query: 258 KYLNGKDVQ 266
L VQ
Sbjct: 58 TALKASGVQ 66
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 44.3 bits (104), Expect = 1e-06
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+++G L+ T + + F ++G + D+ R R GFV F + E+
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGK---VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 58
Query: 258 KYLNGKDVQSYEMK 271
+ ++ ++ + ++
Sbjct: 59 E-IHFHEINNKMVE 71
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 44.7 bits (105), Expect = 2e-06
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
L++G L+ + TE+ L + ++G L +M + + R GFV F + + +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS---RGFGFVTFSSMAEVDA 77
Query: 256 ALKYLNGKDVQSYEMKLGWGKS 277
A+ + ++ +
Sbjct: 78 AMA-ARPHSIDGRVVEPKRAVA 98
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 43.5 bits (102), Expect = 3e-06
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
LY+GNL+P +T L ++FG + +++ FV + ++ RA+
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---------SGYAFVDYPDQNWAIRAI 54
Query: 258 KYLNGK-DVQSYEMKLGWGKS 277
+ L+GK ++ M++ + S
Sbjct: 55 ETLSGKVELHGKIMEVDYSVS 75
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 44.4 bits (104), Expect = 3e-06
Identities = 20/88 (22%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
+ D ++++GN+ + TE+QL +IF GP+ S ++++ R + + GF + +
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKP---KGYGFCEYQD 59
Query: 250 RKDGERALKYLNGKDVQSYEMKLGWGKS 277
++ A++ LNG++ +++ S
Sbjct: 60 QETALSAMRNLNGREFSGRALRVDNAAS 87
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 43.2 bits (101), Expect = 6e-06
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ R E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR---ETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGWGKS 277
+NGK V ++++
Sbjct: 65 MAMNGKSVDGRQIRVDQAGK 84
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 42.7 bits (100), Expect = 7e-06
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ + T++ L F ++G L +M R R GFV + ++ + A+
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP---NTKRSRGFGFVTYATVEEVDAAM 65
Query: 258 KYLNGK 263
K
Sbjct: 66 NARPHK 71
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 42.7 bits (100), Expect = 1e-05
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 182 EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
E + + ++ L +I + L + F G + ++I+ D R +
Sbjct: 5 REPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS---DRNSRRSKG 61
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+V F + A+ L G+ + + + ++
Sbjct: 62 IAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQA 96
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 44.2 bits (103), Expect = 1e-05
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ + T++ L F ++G L +M R R GFV + ++ + A+
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP---NTKRSRGFGFVTYATVEEVDAAM 65
Query: 258 KYLNGKDVQSYEMKLGWGKSVPIPSYPIYIPPKML 292
K ++ K +
Sbjct: 66 NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI 100
Score = 43.8 bits (102), Expect = 2e-05
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
+++G + E L + F +YG I+++ +D + R FV F +
Sbjct: 95 LTVKKIFVGGIKEDTEEHHLRDYFEQYGK---IEVIEIMTDRGSGKKRGFAFVTFDDHDS 151
Query: 253 GERALKYLNGKDVQSYEMKLGWGKS 277
++ + V + ++ S
Sbjct: 152 VDKIVI-QKYHTVNGHNCEVRKALS 175
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 40.5 bits (94), Expect = 3e-05
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+++G + E L + F +YG I+++ +D + R FV F + ++ +
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGK---IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 61
Query: 258 KYLNGKDVQSYEMK 271
V + +
Sbjct: 62 I-QKYHTVNGHNCE 74
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 41.0 bits (95), Expect = 5e-05
Identities = 12/68 (17%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+++ NL+ E+ L E+ ++G L ++++ + + C F FM ++ ++
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVL---HPDTEHSKGCAFAQFMTQEAAQK 65
Query: 256 ALKYLNGK 263
L + +
Sbjct: 66 CLAAASLE 73
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 40.1 bits (93), Expect = 5e-05
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 196 TNLYLGNLNPKIT-EQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
+ + NL+ ++ E L E F +G KI P +E + C F+ F N+ E
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGS--IEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 255 RALKYLNGKDVQSYEMKLGWGKSVP 279
RAL+ +N + + E+ + P
Sbjct: 63 RALQ-MNRSLLGNREISVSLADKKP 86
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 40.5 bits (94), Expect = 6e-05
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+ + L P + Q L + G + + G V ++ ++D E
Sbjct: 16 FRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD----------GMGMVEYLRKEDMEY 65
Query: 256 ALKYLNGKDVQSYEMKLGWGK 276
AL+ L+ +S+E + + +
Sbjct: 66 ALRKLDDTKFRSHEGETSYIR 86
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 39.4 bits (91), Expect = 9e-05
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
T + + NL + ++ + F GP+ + + + F
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN-----FRFARIEFARYDGALA 55
Query: 256 AL----KYLNGKDV 265
A+ K + ++
Sbjct: 56 AITKTHKVVGQNEI 69
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 39.2 bits (90), Expect = 1e-04
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NL++GNLNP + +L + ++ R+ R G+V F + +D E+
Sbjct: 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG----TNRKFGYVDFESAEDLEK 69
Query: 256 ALKYLNGKDVQSYEMKLGWGKS 277
AL L G V E+KL K
Sbjct: 70 AL-ELTGLKVFGNEIKLEKPKG 90
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.7 bits (92), Expect = 1e-04
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
GS P T +LGNL +TE+ + E F + PR R + G+
Sbjct: 7 GSRLPKSPPYT-AFLGNLPYDVTEESIKEFFRGLNI---SAVRLPREPSNPERLKGFGYA 62
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
F + AL LN + + + +++
Sbjct: 63 EFEDLDSLLSALS-LNEESLGNKRIRVDVADQ 93
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 38.3 bits (88), Expect = 3e-04
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
P L+L NL + E L +F ++ ++++ R + FV F
Sbjct: 5 QPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNR--------HDIAFVEFTTEL 56
Query: 252 DGERALKYLNGKDV-QSYEMKLGWGK 276
A + L G + ++ MK+ + K
Sbjct: 57 QSNAAKEALQGFKITPTHAMKITFAK 82
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 38.2 bits (88), Expect = 6e-04
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
GS + C + G+L+ + + L +F +G + I + RG G +
Sbjct: 3 GSLEEKIGCLL-KFSGDLDDQTCREDLHILFSNHGEIKWIDFV---------RGAKEGII 52
Query: 246 AFMNR-KDGERALKYLNGKDVQSYEMKLGW 274
F + K+ K N ++Q ++ W
Sbjct: 53 LFKEKAKEALGKAKDANNGNLQLRNKEVTW 82
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 37.0 bits (85), Expect = 7e-04
Identities = 10/85 (11%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
D ++Y+ T + E G + +I++ + FV F + +
Sbjct: 3 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHK----AFKGSIFVVFDSIE 58
Query: 252 DGERALKYLNGKDVQSYEMKLGWGK 276
++ ++ G+ + ++ + +
Sbjct: 59 SAKKFVE-TPGQKYKETDLLILFKD 82
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 36.6 bits (84), Expect = 0.001
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 198 LYLGNLNP-KITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+++ + K QL+++ +G +++ I+ N F+ +D + A
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---------INEAFIEMATTEDAQAA 61
Query: 257 LKY--LNGKDVQSYEMKLGWGKS 277
+ Y V +++ +
Sbjct: 62 VDYYTTTPALVFGKPVRVHLSQK 84
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 36.7 bits (84), Expect = 0.001
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 15/111 (13%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
+ ++ N+ IT+ +++ + + +G V F N
Sbjct: 5 NSAKVCAHITNIPFSITKMDVLQFLEGIPV---DENAVHVLVDNNGQGLGQALVQFKNED 61
Query: 252 DGERALKYLNGKDVQSYEMKLGWGKSVPIPSYPIYIPPKMLELTVPPPPSG 302
D ++ + L+ K + E + M E+ PP G
Sbjct: 62 DARKSER-LHRKKLNGREAFVHVVT-----------LEDMREIEKNPPAQG 100
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 35.6 bits (81), Expect = 0.003
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+ + L P + Q L + G + + G V F+ ++D A+
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAV 52
Query: 258 KYLNGKDVQSYEMKLGWGK 276
+ L+ +S+E + + +
Sbjct: 53 RKLDNTKFRSHEGETAYIR 71
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 34.9 bits (80), Expect = 0.003
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
T + + ++ F +YG + + N + + ++ +
Sbjct: 5 TWVTVFGFPQASASY-ILLQFAQYGNILKHVMS---------NTGNWMHIRYQSKLQARK 54
Query: 256 ALKYLN 261
AL
Sbjct: 55 ALSKDG 60
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 35.5 bits (81), Expect = 0.004
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 187 SFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVA 246
SF S +++ L + TE + F P+ + P V
Sbjct: 9 SFQSTTGHC--VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRV-----TGEADVE 61
Query: 247 FMNRKDGERALKYLNGKDVQSYEMKLGWGKSVP 279
F +D A+ + ++Q ++L +
Sbjct: 62 FATHEDAVAAMA-KDKANMQHRYVELFLNSTAG 93
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 31.8 bits (71), Expect = 0.047
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+ + L +T Q++ ++ Y + FV +N + E A+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYK----------GTAFVTLLNGEQAEAAI 50
Query: 258 KYLNGKDVQSYEMKLGWGKSVPI 280
+ ++ E+ + + +
Sbjct: 51 NTFHQSRLRERELSVQLQPTDAL 73
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.5 bits (71), Expect = 0.083
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 202 NLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN 261
+ + + + + +YG + SI+I P D + G FV F + D ++A++ L
Sbjct: 21 DEEYEEIVEDVRDECSKYGLVKSIEIPRPV-DGVEVPGCGKIFVEFTSVFDCQKAMQGLT 79
Query: 262 GK 263
G+
Sbjct: 80 GR 81
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.6 bits (68), Expect = 0.15
Identities = 8/80 (10%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
+ L++ L ++TE +++ + ++ +G+N F+ +
Sbjct: 6 APSRVLHIRKLPGEVTETEVIALG---------LPFGKVTNILMLKGKNQAFLELATEEA 56
Query: 253 GERALKYLNGKDVQSYEMKL 272
+ Y + +
Sbjct: 57 AITMVNYYSAVTPHLRNQPI 76
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 30.3 bits (68), Expect = 0.22
Identities = 6/58 (10%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 209 EQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266
+ L ++G + + + V+F + ++ + ++ L+G+
Sbjct: 33 REDLRVECSKFGQIRKLLLF-------DRHPDGVASVSFRDPEEADYCIQTLDGRWFG 83
>d1ux6a2 g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 29.8 bits (66), Expect = 0.46
Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 22/130 (16%)
Query: 601 GLSDAVPLDANNGNEEDEDLDGAPLSDVDGEDLDGVPLDGAALMKSLQRLPHSSSAPDED 660
L+D PL+ N ++ D D D + + +D+D DG ++
Sbjct: 1 ALADNCPLEHN-PDQLDSDSDRIGDTCDNNQDIDE---DG-----------------HQN 39
Query: 661 DIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDD 720
++D P N A D D G D V + D
Sbjct: 40 NLDNCPYVPNANQADHDK-DGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGD 98
Query: 721 VEQSESKDDS 730
+ + DS
Sbjct: 99 ACKDDFDHDS 108
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
{Cow (Bos taurus) [TaxId: 9913]}
Length = 514
Score = 30.1 bits (68), Expect = 1.3
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 25/59 (42%)
Query: 513 HKKIGRLYLVSDI----------------LHNCGIKISNASFYRRGFESRLFQIFTEMH 555
HK IG LYL+ L G + + Y + T H
Sbjct: 12 HKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIY--------NVVVT-AH 61
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 29.2 bits (65), Expect = 2.1
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 513 HKKIGRLYLVSDIL 526
HK++G +Y++ I+
Sbjct: 3 HKRLGIMYIIVAIV 16
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.0 bits (64), Expect = 2.6
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 108 AEEYARLLGDKKTESQRLKKNNKIDIKK--KSNLEMFKEEL-KMIQEEREER 156
E Y +LL K+ + L+ K+ K ++L+ F+ + +Q + E R
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 759
>d2ilxa1 d.61.1.3 (A:1-219) 2',3'-cyclic nucleotide
3'-phosphodiesterase, catalytic domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 219
Score = 28.6 bits (64), Expect = 2.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 119 KTESQRLKKNNKIDIKKKSNLEMFKEELKMIQEEREERHK 158
K S+ L+K ++ +++ N + FK+EL+ E + K
Sbjct: 16 KKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEK 55
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 538
Score = 28.7 bits (64), Expect = 3.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 513 HKKIGRLYLVSDIL 526
HK IG LYL + L
Sbjct: 13 HKDIGVLYLFTGGL 26
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 27.8 bits (62), Expect = 3.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 287 IPPKMLELTVPPPPSGLPFNAQPASKDK 314
+PP + +LT+PPPP +P +
Sbjct: 15 LPPPITDLTLPPPPLVIPPERMLVPSEL 42
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase,
C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 270
Score = 27.6 bits (61), Expect = 5.2
Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 18/120 (15%)
Query: 495 EEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTEM 554
++E + + G ++ + N ++ Y + L +
Sbjct: 148 NSGATVVVEGCGSNGCE-YMTGGTAVILGRVGDNFAAGMTGGMAYVYDLDDSLPLYINDE 206
Query: 555 HITYVNLESRLKAEGLRTRVMQVFRA------------WED-----WAVYPKDYLIKLQN 597
+ + +E L+ + + W W V PK+ L +L+
Sbjct: 207 SVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDWAREVTKFWQVVPKEMLNRLEV 266
>d1ufha_ d.108.1.1 (A:) Putative acetyltransferase YycN {Bacillus
subtilis [TaxId: 1423]}
Length = 155
Score = 26.9 bits (58), Expect = 5.8
Identities = 6/77 (7%), Positives = 21/77 (27%), Gaps = 6/77 (7%)
Query: 325 PLTREDLDRLDQILNQAYVKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPL 384
P+ E+ + Y + V + + +F ++ +
Sbjct: 6 PMQTEEFRSYLTYTTKHYAEEKVKAGT------WLPEDAQLLSKQVFTDLLPRGLETPHH 59
Query: 385 YRFLFENQSPAHIYYRW 401
+ + + + + W
Sbjct: 60 HLWSLKLNEKDIVGWLW 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.372
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,940,081
Number of extensions: 144169
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 107
Length of query: 806
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 713
Effective length of database: 1,130,706
Effective search space: 806193378
Effective search space used: 806193378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.0 bits)