BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17499
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8F|A Chain A, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|B Chain B, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|C Chain C, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|D Chain D, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
Length = 157
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 71/131 (54%), Gaps = 29/131 (22%)
Query: 1 MNNVVYMFNCVNSTVVVKGKLNSVFMDSCKKXXXXXXXXXXXXXXXNCQSVQMQVLGKVP 60
+ V Y++ CVN+T+ +KGK+NS+ +D+CKK N + V++QV+GKVP
Sbjct: 29 LKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVP 88
Query: 61 TISIDKTDGCQMYLSPESLDVEIVLGKVPTISIDKTDGCQMYLSPESLDVEIVSSKSSEM 120
TISI+KTDGC YLS S LD EIVS+KSSEM
Sbjct: 89 TISINKTDGCHAYLSKNS-----------------------------LDCEIVSAKSSEM 119
Query: 121 NVLVPKGNGDY 131
NVL+P GD+
Sbjct: 120 NVLIPTEGGDF 130
>pdb|1KQ5|A Chain A, C-Terminal Domain Of Cyclase Associated Protein With Pro
505 Replaced By Ser (P505s)
pdb|1KQ5|B Chain B, C-Terminal Domain Of Cyclase Associated Protein With Pro
505 Replaced By Ser (P505s)
Length = 159
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 10/95 (10%)
Query: 48 CQSVQMQVLGKVPTISIDKTDGCQMYLSPESLDVEIVLGK---------VPTISIDKTDG 98
C V +Q+ GKV IS+ +T+ C + L ++++ +P ISIDK+DG
Sbjct: 39 CSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDG 98
Query: 99 CQMYLSPESLDVEIVSSKSSEMNVLVPKG-NGDYV 132
+YLS ESL+ EI +S S+ +NV +P G + DYV
Sbjct: 99 GNIYLSKESLNTEIYTSCSTAINVNLPIGEDDDYV 133
>pdb|1K4Z|A Chain A, C-Terminal Domain Of Cyclase Associated Protein
pdb|1K4Z|B Chain B, C-Terminal Domain Of Cyclase Associated Protein
Length = 159
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 10/95 (10%)
Query: 48 CQSVQMQVLGKVPTISIDKTDGCQMYLSPESLDVEIVLGK---------VPTISIDKTDG 98
C V +Q+ GKV IS+ +T+ C + L ++++ +P ISIDK+DG
Sbjct: 39 CSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDG 98
Query: 99 CQMYLSPESLDVEIVSSKSSEMNVLVPKG-NGDYV 132
+YLS ESL+ EI +S S+ +NV +P G + DYV
Sbjct: 99 GNIYLSKESLNTEIYTSCSTAINVNLPIGEDDDYV 133
>pdb|2B0R|A Chain A, Crystal Structure Of Cyclase-Associated Protein From
Cryptosporidium Parvum
pdb|2B0R|B Chain B, Crystal Structure Of Cyclase-Associated Protein From
Cryptosporidium Parvum
Length = 202
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 30/121 (24%)
Query: 12 NSTVVVKGKLNSVFMDSCKKXXXXXXXXXXXXXXXNCQSVQMQVLGKVPTISIDKTDGCQ 71
NS ++V+ K+NS+F++ NC V G + +I I D +
Sbjct: 82 NSRIIVEQKVNSIFIE-------------------NCVGCIFLVNGVISSIEIVNCDDIK 122
Query: 72 MYLSPESLDVEIVLGKVPTISIDKTDGCQMYLSPESLDVEIVSSKSSEMNVLVP-KGNGD 130
+ ++ G VPTIS+DK++ +Y S E +VE+ SSKSSEMN+L P + GD
Sbjct: 123 LQMT----------GIVPTISLDKSNKVNIYTSKEGKNVEVYSSKSSEMNLLFPGEEEGD 172
Query: 131 Y 131
+
Sbjct: 173 W 173
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 86 GKVPTISIDKTDGCQMYLSPESLDVEIVSSKSSEMNVLVPKGNG 129
++PT+ + DG Q +SP L++ S+ ++ L G G
Sbjct: 33 AELPTLGFNYKDGIQPVMSPRQLELHYSKHHSAYVDKLNTLGKG 76
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 56 LGKVPTISIDKTDGCQMYLSPESLDVEIVLGKVPTISIDKTDGCQMYLSPESLDVEIVSS 115
LGKV T++I + Q YL + V +L KV I+++ + +++L P S + S
Sbjct: 306 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS---KVFLVPCSFSQHLKSL 362
Query: 116 KSSEM--NVLVPKGNGDYVSNQSVLGAF 141
+ ++ N++V +Y+ N + GA+
Sbjct: 363 EFLDLSENLMVE----EYLKNSACKGAW 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,598,553
Number of Sequences: 62578
Number of extensions: 119379
Number of successful extensions: 245
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 16
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)