Query psy17499
Match_columns 147
No_of_seqs 155 out of 399
Neff 4.3
Searched_HMMs 46136
Date Sat Aug 17 00:05:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08603 CAP_C: Adenylate cycl 100.0 3E-39 6.4E-44 254.4 13.6 113 1-143 31-144 (159)
2 KOG2675|consensus 100.0 4.3E-38 9.3E-43 278.8 11.5 112 1-142 352-464 (480)
3 KOG2675|consensus 99.9 7E-25 1.5E-29 194.9 10.6 95 23-136 344-448 (480)
4 PF08603 CAP_C: Adenylate cycl 99.9 1.1E-22 2.5E-27 160.4 10.5 93 38-141 30-133 (159)
5 smart00673 CARP Domain in CAPs 98.7 2.1E-08 4.6E-13 60.8 4.6 28 48-75 1-28 (38)
6 smart00673 CARP Domain in CAPs 98.3 1.5E-06 3.2E-11 52.6 4.5 38 10-47 1-38 (38)
7 PF07986 TBCC: Tubulin binding 98.2 3.4E-05 7.5E-10 57.3 10.7 70 3-74 2-71 (120)
8 PF07986 TBCC: Tubulin binding 97.3 0.002 4.4E-08 47.7 8.5 53 22-74 2-54 (120)
9 KOG4416|consensus 85.0 1.8 3.9E-05 40.7 5.2 72 3-76 335-406 (605)
10 KOG4416|consensus 49.4 28 0.00061 33.1 4.5 73 20-104 333-405 (605)
11 KOG3309|consensus 47.9 17 0.00037 29.4 2.5 27 103-129 119-147 (159)
No 1
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.
Probab=100.00 E-value=3e-39 Score=254.41 Aligned_cols=113 Identities=66% Similarity=1.026 Sum_probs=98.5
Q ss_pred CCceEEEEeecCcEEEEcCEEcEEEeeceeeeEEEEcccccEEEEEeeeeeEEEEeceeceEEEEccCCeeeeccCCcce
Q psy17499 1 MNNVVYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPTISIDKTDGCQMYLSPESLD 80 (147)
Q Consensus 1 ~~~~v~i~~c~~~~i~i~gk~nsI~i~~C~k~~vv~~~~v~sV~I~nC~~~~IqVkGKvnsIsidkc~k~~lv~d~ss~~ 80 (147)
|+|+||||+|+|++|+|+||+|+|++++|+|+.++|+++|+++++.||+++++|+.|++|+|++|+|+++
T Consensus 31 ~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g~vPti~iDktdg~---------- 100 (159)
T PF08603_consen 31 MKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLGKVPTISIDKTDGC---------- 100 (159)
T ss_dssp TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS--SEEEEES-EEE----------
T ss_pred CCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEccCCEEEEeccccE----------
Confidence 7999999999999999999999999999999999999999999999999999999988888888888777
Q ss_pred eEEeeCCcceEEEeccccceeeeCCCCCceEEEEeeccceEEEeeC-CCCceeeccCcccceee
Q psy17499 81 VEIVLGKVPTISIDKTDGCQMYLSPESLDVEIVSSKSSEMNVLVPK-GNGDYVSNQSVLGAFIV 143 (147)
Q Consensus 81 v~qV~G~vPtI~IDKtdg~~~yls~es~~~~I~tSKSs~~nV~~~~-~~~d~~e~p~~~~~f~~ 143 (147)
++|||+++++++|++|||++|||++|. ++|||+|+|+ ||||.-
T Consensus 101 -------------------~iyLsk~s~~~eivtskss~mNv~~p~~~~~D~~E~pi-PEQf~~ 144 (159)
T PF08603_consen 101 -------------------QIYLSKESLDTEIVTSKSSEMNVNVPDGEDGDYVEHPI-PEQFKT 144 (159)
T ss_dssp -------------------EEE--CCCTT-EEEEES-EEEEEEEECSCTTEEEEEEE---EEEE
T ss_pred -------------------EEEECcccccEEEEEEccccEEEEecCCCCCCceeCCC-chhEEE
Confidence 999999999999999999999999998 7899999999 999974
No 2
>KOG2675|consensus
Probab=100.00 E-value=4.3e-38 Score=278.77 Aligned_cols=112 Identities=60% Similarity=0.987 Sum_probs=97.9
Q ss_pred CCceEEEEeecCcEEEEcCEEcEEEeeceeeeEEEEcccccEEEEEeeeeeEEEEeceeceEEEEccCCeeeeccCCcce
Q psy17499 1 MNNVVYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPTISIDKTDGCQMYLSPESLD 80 (147)
Q Consensus 1 ~~~~v~i~~c~~~~i~i~gk~nsI~i~~C~k~~vv~~~~v~sV~I~nC~~~~IqVkGKvnsIsidkc~k~~lv~d~ss~~ 80 (147)
+||++|||+|+|++|+||||+|+|+|++|+|+.|+||++|..++|.||+++.||+.|++|+|+||+|++|
T Consensus 352 ~kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~PtiSI~ktdGc---------- 421 (480)
T KOG2675|consen 352 LKQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVPTISIDKTDGC---------- 421 (480)
T ss_pred ccceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEcccCCeEEEecCCCe----------
Confidence 4788888888888888888888888888888888888888888888888888877766666666665555
Q ss_pred eEEeeCCcceEEEeccccceeeeCCCCCceEEEEeeccceEEEeeC-CCCceeeccCccccee
Q psy17499 81 VEIVLGKVPTISIDKTDGCQMYLSPESLDVEIVSSKSSEMNVLVPK-GNGDYVSNQSVLGAFI 142 (147)
Q Consensus 81 v~qV~G~vPtI~IDKtdg~~~yls~es~~~~I~tSKSs~~nV~~~~-~~~d~~e~p~~~~~f~ 142 (147)
++|||++|++|||++|||++|||++|. ++|||.|+|+ ||||-
T Consensus 422 -------------------~iYLSk~sL~~eIvtsKSsemNi~vp~~~dgDy~Efpv-PEQfk 464 (480)
T KOG2675|consen 422 -------------------HIYLSKDSLDCEIVTSKSSEMNINVPTNEDGDYVEFPV-PEQFK 464 (480)
T ss_pred -------------------eEEeccccccceEEeecccceeEecccCCCCCcccccC-hHHHh
Confidence 999999999999999999999999997 7899999999 99994
No 3
>KOG2675|consensus
Probab=99.92 E-value=7e-25 Score=194.93 Aligned_cols=95 Identities=29% Similarity=0.449 Sum_probs=87.1
Q ss_pred EEEeeceeeeEEEEcccccEEEEEeeeeeEEEEeceeceEEEEccCCeeeeccC--------CcceeE-EeeCCcceEEE
Q psy17499 23 SVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPTISIDKTDGCQMYLSP--------ESLDVE-IVLGKVPTISI 93 (147)
Q Consensus 23 sI~i~~C~k~~vv~~~~v~sV~I~nC~~~~IqVkGKvnsIsidkc~k~~lv~d~--------ss~~v~-qV~G~vPtI~I 93 (147)
.+.|+.|++.+ ++|||+|.+++|||+||+|+|++|+|+|++||||+ +|.+++ |++|.+|||+|
T Consensus 344 ~~Vi~~~e~kq--------svyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~PtiSI 415 (480)
T KOG2675|consen 344 NLVIDDAELKQ--------SVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVPTISI 415 (480)
T ss_pred ceeeeeccccc--------eEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEcccCCeEEE
Confidence 66677776666 99999999999999999999999999999999999 355666 79999999999
Q ss_pred eccccceeeeCCCCCceEEEEee-ccceEEEeeCCCCceeeccC
Q psy17499 94 DKTDGCQMYLSPESLDVEIVSSK-SSEMNVLVPKGNGDYVSNQS 136 (147)
Q Consensus 94 DKtdg~~~yls~es~~~~I~tSK-Ss~~nV~~~~~~~d~~e~p~ 136 (147)
||| +||+||||| |.+.+|+++|++..|+..|.
T Consensus 416 ~kt-----------dGc~iYLSk~sL~~eIvtsKSsemNi~vp~ 448 (480)
T KOG2675|consen 416 DKT-----------DGCHIYLSKDSLDCEIVTSKSSEMNINVPT 448 (480)
T ss_pred ecC-----------CCeeEEeccccccceEEeecccceeEeccc
Confidence 999 999999999 99999999999999999886
No 4
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.
Probab=99.88 E-value=1.1e-22 Score=160.37 Aligned_cols=93 Identities=37% Similarity=0.542 Sum_probs=74.7
Q ss_pred ccccEEEEEeeeeeEEEEeceeceEEEEccCCeeeeccC--Cccee------E-EeeCCcceEEEeccccceeeeCCCCC
Q psy17499 38 SLVSSVEFVNCQSVQMQVLGKVPTISIDKTDGCQMYLSP--ESLDV------E-IVLGKVPTISIDKTDGCQMYLSPESL 108 (147)
Q Consensus 38 ~~v~sV~I~nC~~~~IqVkGKvnsIsidkc~k~~lv~d~--ss~~v------~-qV~G~vPtI~IDKtdg~~~yls~es~ 108 (147)
++-|+|||++|++++|+|+||+|+|++|+|++++++||+ |++++ + |++|++|||+|||| +
T Consensus 30 ~~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g~vPti~iDkt-----------d 98 (159)
T PF08603_consen 30 EMKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLGKVPTISIDKT-----------D 98 (159)
T ss_dssp -TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS--SEEEEES------------E
T ss_pred CCCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEccCCEEEEecc-----------c
Confidence 345599999999999999999999999999999999999 54443 3 79999999999999 8
Q ss_pred ceEEEEee-ccceEEEeeCCCCceeeccC-cccce
Q psy17499 109 DVEIVSSK-SSEMNVLVPKGNGDYVSNQS-VLGAF 141 (147)
Q Consensus 109 ~~~I~tSK-Ss~~nV~~~~~~~d~~e~p~-~~~~f 141 (147)
|++||+|| |.+++|+++++++.|+.+|. -.+.|
T Consensus 99 g~~iyLsk~s~~~eivtskss~mNv~~p~~~~~D~ 133 (159)
T PF08603_consen 99 GCQIYLSKESLDTEIVTSKSSEMNVNVPDGEDGDY 133 (159)
T ss_dssp EEEEE--CCCTT-EEEEES-EEEEEEEECSCTTEE
T ss_pred cEEEEECcccccEEEEEEccccEEEEecCCCCCCc
Confidence 99999999 88999999999999999987 34445
No 5
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product.
Probab=98.73 E-value=2.1e-08 Score=60.77 Aligned_cols=28 Identities=57% Similarity=0.953 Sum_probs=23.4
Q ss_pred eeeeEEEEeceeceEEEEccCCeeeecc
Q psy17499 48 CQSVQMQVLGKVPTISIDKTDGCQMYLS 75 (147)
Q Consensus 48 C~~~~IqVkGKvnsIsidkc~k~~lv~d 75 (147)
|+++++|++||+|++++|+|+++.++|+
T Consensus 1 C~~~~i~v~g~~~~v~id~~~~~~i~l~ 28 (38)
T smart00673 1 CESCTIQVSGKVNTISIDKCKKCSIYLG 28 (38)
T ss_pred CCcEEEEEeCccCEEEEECCCCeEEEEC
Confidence 7899999999999999999999944433
No 6
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product.
Probab=98.28 E-value=1.5e-06 Score=52.61 Aligned_cols=38 Identities=39% Similarity=0.709 Sum_probs=35.9
Q ss_pred ecCcEEEEcCEEcEEEeeceeeeEEEEcccccEEEEEe
Q psy17499 10 CVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVN 47 (147)
Q Consensus 10 c~~~~i~i~gk~nsI~i~~C~k~~vv~~~~v~sV~I~n 47 (147)
|++++|+++||++++.|++|+++++.+.....+++|.+
T Consensus 1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~~ 38 (38)
T smart00673 1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN 38 (38)
T ss_pred CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEEC
Confidence 89999999999999999999999999999999998864
No 7
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=98.18 E-value=3.4e-05 Score=57.26 Aligned_cols=70 Identities=30% Similarity=0.582 Sum_probs=53.7
Q ss_pred ceEEEEeecCcEEEEcCEEcEEEeeceeeeEEEEcccccEEEEEeeeeeEEEEeceeceEEEEccCCeeeec
Q psy17499 3 NVVYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPTISIDKTDGCQMYL 74 (147)
Q Consensus 3 ~~v~i~~c~~~~i~i~gk~nsI~i~~C~k~~vv~~~~v~sV~I~nC~~~~IqVkGKvnsIsidkc~k~~lv~ 74 (147)
+.+.+.||.+++|.+.+.+.++.|.+|+++.|.+-..-.++.|.+|+++++.+. ...+.+.+|..+.+.+
T Consensus 2 ~~~~i~n~~~c~I~l~~~~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~~--~~QlRih~~~n~~~~l 71 (120)
T PF07986_consen 2 SDVTISNCSNCTIYLLDPLSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIVA--CRQLRIHNSTNCTFYL 71 (120)
T ss_dssp -EEEEES-BS-EEEE-S-BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEEE--ECEEEEES-ECEEEEE
T ss_pred CcEEEecCcCCEEEeCCCcceEEEeCCCCCEEEEeecCceEEEecCCceEEEEE--cCCeEEccccceEEEE
Confidence 578999999999999999999999999999999987888999999999999985 4699999999994443
No 8
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=97.31 E-value=0.002 Score=47.74 Aligned_cols=53 Identities=17% Similarity=0.404 Sum_probs=39.0
Q ss_pred cEEEeeceeeeEEEEcccccEEEEEeeeeeEEEEeceeceEEEEccCCeeeec
Q psy17499 22 NSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPTISIDKTDGCQMYL 74 (147)
Q Consensus 22 nsI~i~~C~k~~vv~~~~v~sV~I~nC~~~~IqVkGKvnsIsidkc~k~~lv~ 74 (147)
+++.|.+|+++.|.+.+...++.|.+|++++|.+----.++.+++|.++.+++
T Consensus 2 ~~~~i~n~~~c~I~l~~~~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~ 54 (120)
T PF07986_consen 2 SDVTISNCSNCTIYLLDPLSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIV 54 (120)
T ss_dssp -EEEEES-BS-EEEE-S-BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEE
T ss_pred CcEEEecCcCCEEEeCCCcceEEEeCCCCCEEEEeecCceEEEecCCceEEEE
Confidence 47899999999999999999999999999999885567789999999997664
No 9
>KOG4416|consensus
Probab=84.97 E-value=1.8 Score=40.73 Aligned_cols=72 Identities=21% Similarity=0.399 Sum_probs=62.5
Q ss_pred ceEEEEeecCcEEEEcCEEcEEEeeceeeeEEEEcccccEEEEEeeeeeEEEEeceeceEEEEccCCeeeeccC
Q psy17499 3 NVVYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPTISIDKTDGCQMYLSP 76 (147)
Q Consensus 3 ~~v~i~~c~~~~i~i~gk~nsI~i~~C~k~~vv~~~~v~sV~I~nC~~~~IqVkGKvnsIsidkc~k~~lv~d~ 76 (147)
-+|-+-+|+.+.|-.=.-+-.+.+++|.+..+++-..=-++.+.+|.++.+.+ -++-|.|-+|+.|...+-.
T Consensus 335 ~sVkv~~Cnes~iyLl~plr~~tv~~c~~s~~Vlg~agkt~~~h~c~rV~vi~--~~~Ri~I~~~~ecvff~~v 406 (605)
T KOG4416|consen 335 RSVKVPNCNESVIYLLAPLRYATVFGCSDSTIVLGAAGKTTKVHHCERVHVIV--AIKRICIANCRECVFFLGV 406 (605)
T ss_pred ceeeecccchhhhhhhcCcceeeeeccCCceEEEecccceeeeccccceEEEE--EeeeEEEecccceEEEecc
Confidence 36778899999998888889999999999999999999999999999987755 5889999999998765443
No 10
>KOG4416|consensus
Probab=49.38 E-value=28 Score=33.07 Aligned_cols=73 Identities=15% Similarity=0.294 Sum_probs=47.6
Q ss_pred EEcEEEeeceeeeEEEEcccccEEEEEeeeeeEEEEeceeceEEEEccCCeeeeccCCcceeEEeeCCcceEEEeccccc
Q psy17499 20 KLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPTISIDKTDGCQMYLSPESLDVEIVLGKVPTISIDKTDGC 99 (147)
Q Consensus 20 k~nsI~i~~C~k~~vv~~~~v~sV~I~nC~~~~IqVkGKvnsIsidkc~k~~lv~d~ss~~v~qV~G~vPtI~IDKtdg~ 99 (147)
|.-+|.+-+|+-..+-+=...-.+.+++|.++++..--.-.++-+.+|++.-++. .+--|.|-.|++|
T Consensus 333 kg~sVkv~~Cnes~iyLl~plr~~tv~~c~~s~~Vlg~agkt~~~h~c~rV~vi~------------~~~Ri~I~~~~ec 400 (605)
T KOG4416|consen 333 KGRSVKVPNCNESVIYLLAPLRYATVFGCSDSTIVLGAAGKTTKVHHCERVHVIV------------AIKRICIANCREC 400 (605)
T ss_pred ccceeeecccchhhhhhhcCcceeeeeccCCceEEEecccceeeeccccceEEEE------------EeeeEEEecccce
Confidence 4447777778877777777777888888888776443344567777787764442 3334556666665
Q ss_pred eeeeC
Q psy17499 100 QMYLS 104 (147)
Q Consensus 100 ~~yls 104 (147)
-+|+.
T Consensus 401 vff~~ 405 (605)
T KOG4416|consen 401 VFFLG 405 (605)
T ss_pred EEEec
Confidence 55554
No 11
>KOG3309|consensus
Probab=47.87 E-value=17 Score=29.37 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=21.4
Q ss_pred eCCCC-CceEEEEeeccc-eEEEeeCCCC
Q psy17499 103 LSPES-LDVEIVSSKSSE-MNVLVPKGNG 129 (147)
Q Consensus 103 ls~es-~~~~I~tSKSs~-~nV~~~~~~~ 129 (147)
|.+-| +||||.++|+.+ |.|-+|..+-
T Consensus 119 Lt~tSRLGCQI~l~keldG~~v~vP~atr 147 (159)
T KOG3309|consen 119 LTETSRLGCQIVLTKELDGMRVAVPEATR 147 (159)
T ss_pred cccccccceEEEeccccCCcEEECccccc
Confidence 44555 899999999887 8888997654
Done!