RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17499
         (147 letters)



>gnl|CDD|203997 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C terminal. 
          Length = 157

 Score =  141 bits (358), Expect = 5e-44
 Identities = 71/133 (53%), Positives = 89/133 (66%), Gaps = 30/133 (22%)

Query: 1   MNNVVYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVP 60
           +   VY+F C NST+ +KGK+N++ +D+CKK S+VFDSLVSSVE +NC+SV++QVLGKVP
Sbjct: 29  LKQSVYIFKCNNSTIQIKGKVNAISLDNCKKCSLVFDSLVSSVEVINCKSVKIQVLGKVP 88

Query: 61  TISIDKTDGCQMYLSPESLDVEIVLGKVPTISIDKTDGCQMYLSPESLDVEIVSSKSSEM 120
           TISID                             KTDGCQ+YLS ESL+ EIVSSKSSEM
Sbjct: 89  TISID-----------------------------KTDGCQIYLSKESLNTEIVSSKSSEM 119

Query: 121 NVLVPKG-NGDYV 132
           N+ VP G +GDY 
Sbjct: 120 NINVPTGEDGDYK 132


>gnl|CDD|197827 smart00673, CARP, Domain in CAPs (cyclase-associated proteins)
          and X-linked retinitis pigmentosa 2 gene product. 
          Length = 38

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 21/37 (56%), Positives = 24/37 (64%)

Query: 48 CQSVQMQVLGKVPTISIDKTDGCQMYLSPESLDVEIV 84
          C+S  +QV GKV TISIDK   C +YL P S   EIV
Sbjct: 1  CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIV 37



 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 83  IVLGKVPTISIDKTDGCQMYLSPESLDVEIVS 114
            V GKV TISIDK   C +YL P S   EIV+
Sbjct: 7   QVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN 38



 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 10 CVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVN 47
          C + T+ V GK+N++ +D CKK S+    +  S E VN
Sbjct: 1  CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN 38


>gnl|CDD|219683 pfam07986, TBCC, Tubulin binding cofactor C.  Members of this
          family are involved in the folding pathway of tubulins
          and form a beta helix structure.
          Length = 119

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 9  NCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPTISIDKTD 68
          N  N T+ +   L+S+ +D+CK  +++   +  SV   +C++  + V  +   + I    
Sbjct: 8  NLSNCTIYLLDPLSSLTIDNCKDCTIILGPVSGSVFIRDCENCTIVVACR--QLRIHDCT 65

Query: 69 GCQMYLS 75
           C  YL 
Sbjct: 66 NCDFYLH 72


>gnl|CDD|163442 TIGR03730, tungstate_WtpA, tungstate ABC transporter binding
           protein WtpA.  Members of this protein family are
           tungstate (and, more weakly, molybdate) binding proteins
           of tungstate(/molybdate) ABC transporters, as first
           characterized in Pyrococcus furiosus. Model seed members
           and cutoffs, pending experimental evidence for more
           distant homologs, were chosen such that this model
           identifies select archaeal proteins, excluding weaker
           archaeal and all bacterial homologs. Note that this
           family is homologous to molybdate transporters, and that
           at least one other family of tungstate transporter
           binding protein, TupA, also exists.
          Length = 273

 Score = 26.2 bits (58), Expect = 7.5
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 82  EIVLGKVPTISIDKTDGCQMYLSPESLDVE----IVSSKSSEMNVLVPKGNGDY 131
           + +L K   I++++ +G  +   P+ +DV      +  K  E+  L+  G  DY
Sbjct: 145 DNLLLKNTNITVEENNGTYLIHVPKEIDVNRSKIFIRPKEVELLSLLESGEIDY 198


>gnl|CDD|235948 PRK07157, PRK07157, acetate kinase; Provisional.
          Length = 400

 Score = 25.9 bits (57), Expect = 9.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 82  EIVLGKV--PTISIDKTDGCQMYLSPESLDVEIVSSKSSEMNVLVPKGN 128
           E+V+ K+  P I +DK    +     E   +E++S+  S++ V V + N
Sbjct: 339 ELVINKINIPNIKLDKEKNLKKI--GEYGPIELISTPDSDIPVYVIRTN 385


>gnl|CDD|165774 PLN00209, PLN00209, ribosomal protein S27; Provisional.
          Length = 86

 Score = 24.8 bits (54), Expect = 9.4
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 22 NSVFMD----SCKKSSVVFDSLVSSVEFVNCQSVQMQVLG 57
          NS FMD     C   + VF    + V   +CQ+V  Q  G
Sbjct: 31 NSFFMDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTG 70


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0825    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,811,012
Number of extensions: 564577
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 16
Length of query: 147
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 59
Effective length of database: 7,034,450
Effective search space: 415032550
Effective search space used: 415032550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)