RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17499
(147 letters)
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural
genomics, PSI, protein structure initiative; 2.80A {Homo
sapiens} SCOP: b.80.5.1
Length = 157
Score = 120 bits (303), Expect = 4e-36
Identities = 59/132 (44%), Positives = 80/132 (60%), Gaps = 29/132 (21%)
Query: 1 MNNVVYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVP 60
+ V Y++ CVN+T+ +KGK+NS+ +D+CKK +VFD +V VE +N + V++QV+GKVP
Sbjct: 29 LKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVP 88
Query: 61 TISIDKTDGCQMYLSPESLDVEIVLGKVPTISIDKTDGCQMYLSPESLDVEIVSSKSSEM 120
TISI+ KTDGC YLS SLD EIVS+KSSEM
Sbjct: 89 TISIN-----------------------------KTDGCHAYLSKNSLDCEIVSAKSSEM 119
Query: 121 NVLVPKGNGDYV 132
NVL+P GD+
Sbjct: 120 NVLIPTEGGDFN 131
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics
consortium, SGC, unknown function; 2.60A
{Cryptosporidium parvum}
Length = 202
Score = 120 bits (303), Expect = 2e-35
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 30/133 (22%)
Query: 1 MNNVVYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVP 60
+ N V + NS ++V+ K+NS+F+++C + + ++SS+E VNC +++Q+ G VP
Sbjct: 71 IKNKVSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTGIVP 130
Query: 61 TISIDKTDGCQMYLSPESLDVEIVLGKVPTISIDKTDGCQMYLSPESLDVEIVSSKSSEM 120
TIS+D K++ +Y S E +VE+ SSKSSEM
Sbjct: 131 TISLD-----------------------------KSNKVNIYTSKEGKNVEVYSSKSSEM 161
Query: 121 NVLVPKG-NGDYV 132
N+L P GD+
Sbjct: 162 NLLFPGEEEGDWK 174
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel
beta-helix, intertwined dimer; 2.30A {Saccharomyces
cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A
Length = 159
Score = 116 bits (293), Expect = 2e-34
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 30/133 (22%)
Query: 1 MNNVVYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVP 60
+ +++ C V +KGK+N++ + + SVV DS +S ++ + +QV +P
Sbjct: 30 KDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLP 89
Query: 61 TISIDKTDGCQMYLSPESLDVEIVLGKVPTISIDKTDGCQMYLSPESLDVEIVSSKSSEM 120
ISID K+DG +YLS ESL+ EI +S S+ +
Sbjct: 90 QISID-----------------------------KSDGGNIYLSKESLNTEIYTSCSTAI 120
Query: 121 NVLVPKG-NGDYV 132
NV +P G + DYV
Sbjct: 121 NVNLPIGEDDDYV 133
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein
and GTPase, retinitis pigmentosa, GTP-binding,
lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens}
PDB: 3bh6_B* 2bx6_A
Length = 352
Score = 52.2 bits (124), Expect = 7e-09
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 2 NNVVYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPT 61
+ +C N + + +V +D C + + SV F NC+ + +
Sbjct: 61 GQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTL--ACQQ 118
Query: 62 ISIDKTDGCQMYLSPES 78
+ +++L +
Sbjct: 119 FRVRDCRKLEVFLCCAT 135
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding,
beta-roll, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 179
Score = 40.5 bits (94), Expect = 4e-05
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 5 VYMFNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVPTISI 64
V + N TV + G N++ + ++ + +SV +C + V + + I
Sbjct: 33 VLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQ--QLRI 90
Query: 65 DKTDGCQMYLSPES 78
T +++L S
Sbjct: 91 HSTKDTRIFLQVTS 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.001
Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 16/63 (25%)
Query: 8 FNCVNSTVVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQSVQMQVLGKVP-TISIDK 66
+N N V G L ++ D++ + + F+ Q + + ++ ++S+++
Sbjct: 1846 YNVENQQYVAAGDLRAL------------DTVTNVLNFIKLQKIDII---ELQKSLSLEE 1890
Query: 67 TDG 69
+G
Sbjct: 1891 VEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.004
Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 37/137 (27%)
Query: 15 VVVKGKLNSVFMDSCKKSSVVFDSLVSSVEFVNCQS--VQMQVLGKVPTISIDKTDGCQM 72
V++ G + K+ + V C S VQ ++ K+ +++ +
Sbjct: 153 VLIDG------VLGSGKTW-----VALDV----CLSYKVQCKMDFKIFWLNLKNCN---- 193
Query: 73 YLSPESLDVEIVLGKVPTIS--IDKTDGCQMYLSPESLDVEIVSSKSSEMNVLVPKGNG- 129
SPE++ L + + ID + ++ + I S ++ +L K
Sbjct: 194 --SPETV-----LEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 130 -----DYVSNQSVLGAF 141
V N AF
Sbjct: 246 CLLVLLNVQNAKAWNAF 262
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet,
PSI, protein structure initiative; NMR {Archaeoglobus
fulgidus} SCOP: g.41.8.4
Length = 66
Score = 25.5 bits (56), Expect = 2.3
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 21 LNSVFMD----SCKKSSVVFDSLVSSVEFVNCQSV 51
++S F+ C+ V+FD + V+ + C
Sbjct: 1 MHSRFVKVKCPDCEHEQVIFDHPSTIVKCIICGRT 35
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_6
Length = 81
Score = 24.7 bits (54), Expect = 7.0
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 22 NSVFMD----SCKKSSVVFDSLVSSVEFVNCQSV 51
NS FMD C+ ++F + S++ C ++
Sbjct: 27 NSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAI 60
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 24.3 bits (53), Expect = 8.6
Identities = 0/34 (0%), Positives = 6/34 (17%), Gaps = 4/34 (11%)
Query: 22 NSVFMD----SCKKSSVVFDSLVSSVEFVNCQSV 51
+ + + ++ +
Sbjct: 29 WFDIKAPSTFENRNVGKTLVNKSTGLKSASDALK 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,032,304
Number of extensions: 103889
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 13
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)