BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1750
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 40 DEWVDILGSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDL 98
+EW+DILG+G ++KK G P +RP +G + + LE+ T V+ L +GD
Sbjct: 8 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDC 67
Query: 99 ELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL--PDF 156
+++ +D +PLM++GE + +++ YG +G S IPP A L +TL + + PD
Sbjct: 68 DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDL 127
Query: 157 DLA 159
+++
Sbjct: 128 EMS 130
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 42 WVDILGSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLEL 100
W+DILG+G ++KK G P +RP +G + + LE+ T V+ L +GD ++
Sbjct: 36 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDV 95
Query: 101 VHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL 153
+ +D +PLM++GE + +++ YG +G S IPP A L +TL + +
Sbjct: 96 IQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV 148
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 41 EWVDILGSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLE 99
EW+DILG+G ++KK G P +RP +G + + LE+ T V+ L +GD +
Sbjct: 3 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCD 62
Query: 100 LVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL--PDFD 157
++ +D +PLM++GE + +++ YG +G S IPP A L +TL + + PD +
Sbjct: 63 VIQALDLSVPLMDVGETAMVTADSKYCYGPQGR-SPYIPPHAALCLEVTLKTAVDGPDLE 121
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 40 DEWVDILGSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDL 98
+EW+DILG+G ++KK G P +RP +G + + LE+ T V+ L +GD
Sbjct: 4 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDC 63
Query: 99 ELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL 153
+++ +D +PLM++GE + +++ YG +G S IPP A L +TL + +
Sbjct: 64 DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGR-SPYIPPHAALCLEVTLKTAV 117
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 1/167 (0%)
Query: 49 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGD-LELVHGMDYV 107
G I ++I GE +P G + ++ G +D + EI G+ L+L +G++
Sbjct: 25 GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERA 84
Query: 108 LPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRL 167
+ ME GE + + + +G G+ IPP A+L Y L L S + E+ E++L
Sbjct: 85 IQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKL 144
Query: 168 DFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTNNASRSS 214
+ K RG ++ G A+ Y++ + +L+ + +N ++ +
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 9/176 (5%)
Query: 44 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFD--NLEICVG---DL 98
D+L G I ++ + GE + P G I LE FD ++ VG D
Sbjct: 141 DLLEDGGIIRRTKRRGEGYSNPNEGARVQIH----LEGRCGGRVFDCRDVAFTVGEGEDH 196
Query: 99 ELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDL 158
++ G+D L M+ E+C + + R+G+G+ G+P I P A+L Y +TL S +
Sbjct: 197 DIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKES 256
Query: 159 AELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTNNASRSS 214
E+ +++L+ K +G ++ G AV Y + + +L+ + S++S
Sbjct: 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K + + G + P GD + GKL + D+ + + +G +++ D
Sbjct: 33 VLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDI 92
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M+ GE C + + YG G K IP A L++ + L
Sbjct: 93 GVATMKKGEICHLLCKPEYAYGATGSLPK-IPSNATLFFEVEL 134
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 53 KKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVET-----------FDNLEICVGDLELV 101
K + K G+ P++GD+ G L+D T+ +T L VG +++
Sbjct: 5 KSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVI 64
Query: 102 HGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
G D L M GE+ ++EI + YG KG+P IPP AKL + + L
Sbjct: 65 RGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVEL 112
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%)
Query: 28 PVIPDKPEEEVEDEWVDILGS-----GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDD 82
P IP E E +D G G I ++ + GE + P G I LE
Sbjct: 120 PKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIH----LEGR 175
Query: 83 TLVETFD--NLEICVG---DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSI 137
FD ++ VG D ++ G+D L M+ E+C + + R+G+G+ G+P I
Sbjct: 176 CGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGI 235
Query: 138 PPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSL 197
P A+L Y +TL S + E+ +++L+ K +G ++ G AV Y + +
Sbjct: 236 EPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIV 295
Query: 198 DFLDSSNMDTNNASRSS 214
+L+ + S++S
Sbjct: 296 SWLEMEYGLSEKESKAS 312
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K + + G + P GD + GKL + D+ + + +G +++ D
Sbjct: 33 VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI 92
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M+ GE C + + YG G K IP A L++ + L
Sbjct: 93 GVATMKRGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIEL 134
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
Query: 49 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGD-LELVHGMDYV 107
G I ++I GE +P G + ++ G +D + EI G+ L+L +G++
Sbjct: 25 GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERA 84
Query: 108 LPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRL 167
+ E GE + + + +G G+ IPP A+L Y L L S + E E++L
Sbjct: 85 IQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEXNSEEKL 144
Query: 168 DFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTNNASRSS 214
+ K RG ++ G A+ Y++ + +L+ + +N ++ +
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 47 GSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVET-----------FDNLEICV 95
G K I K G+ P++GD+ G L D T+ +T L V
Sbjct: 2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61
Query: 96 GDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
G +++ G D L M GE+ ++EI + YG KG+P IPP KL + + L
Sbjct: 62 GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVEL 115
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 44 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLELVHG 103
DI G I KKI K G+ P+ D + +LED T+V + +E V D L
Sbjct: 138 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPA 197
Query: 104 MDYVLPLMEMGEECQIEITARFGYGDKGEPSK----SIPPGAKLYYSLTLHS 151
+ + M+ GE+ + + ++G+G+ G P+ ++PP A L L L S
Sbjct: 198 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVS 249
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 50 HIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLV-----ETFDNLEICVGDLELVHGM 104
I KK+ K E RP G + + GKL+D T+ + + E + ++ G+
Sbjct: 261 KILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGL 320
Query: 105 DYVLPLMEMGEECQIEITARFGYGDKGEPSKSI-PPGAKLYYSLTLHSVLPD 155
D + M+ GE + I + YG +I PP + + Y + L S + D
Sbjct: 321 DRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 372
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 65 PQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMGEECQIE 120
P+ GD + G L D D+ + D + +G +++ G D + M+ GE
Sbjct: 43 PEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFT 102
Query: 121 ITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAE 160
I YG+ G P +IP A L + + L S D+A+
Sbjct: 103 IPPELAYGESGSPP-TIPANATLQFDVELLSWTSVRDIAK 141
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 44 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLELVHG 103
DI G I KKI K G+ P+ D + +LED T+V + +E V D L
Sbjct: 122 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPA 181
Query: 104 MDYVLPLMEMGEECQIEITARFGYGDKGEPSK----SIPPGAKLYYSLTLHS 151
+ + M+ GE+ + + ++G+G+ G P+ ++PP A L L L S
Sbjct: 182 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVS 233
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 50 HIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLV-----ETFDNLEICVGDLELVHGM 104
I KK+ K E RP G + + GKL+D T+ + + E + ++ G+
Sbjct: 245 KILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGL 304
Query: 105 DYVLPLMEMGEECQIEITARFGYGDKGEPSKSI-PPGAKLYYSLTLHSVLPD 155
D + M+ GE + I + YG +I PP + + Y + L S + D
Sbjct: 305 DRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 356
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 65 PQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMGEECQIE 120
P+ GD + G L D D+ + D + +G +++ G D + M+ GE
Sbjct: 27 PEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFT 86
Query: 121 ITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAE 160
I YG+ G P +IP A L + + L S D+A+
Sbjct: 87 IPPELAYGESGSPP-TIPANATLQFDVELLSWTSVRDIAK 125
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 49 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGM 104
G + K I K G+ +P G + G LE+ T ++ D +G ++ G
Sbjct: 14 GGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGW 73
Query: 105 DYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
D + M GE + I + +GYGD G P K IP GA L + + L
Sbjct: 74 DLGVATMTKGEVAEFTIRSDYGYGDAGSPPK-IPGGATLIFEVEL 117
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 49 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGM 104
G++K G+ T P+ GDL I G LE+ D+ V+ + +G +++ G
Sbjct: 6 GNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGW 65
Query: 105 DYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
D +P + +GE+ ++ I + YG +G P IPP + L + + L V
Sbjct: 66 DVGIPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKV 112
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 28 PVIPDKPEEEVEDEWVDILGS-----GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDD 82
P IP E E +D G G I ++ + GE + P G I LE
Sbjct: 124 PKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIH----LEGR 179
Query: 83 TLVETFD--NLEICVG---DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSI 137
FD ++ VG D ++ G+D L M+ E+C + + R+G+G+ G+P I
Sbjct: 180 CGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGI 239
Query: 138 PPGAKLYYSLTLHS 151
P A+L Y +TL S
Sbjct: 240 EPNAELIYEVTLKS 253
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K + + G + P GD + GKL + D+ + + +G +++ D
Sbjct: 37 VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI 96
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M+ GE C + + YG G K IP A L++ + L
Sbjct: 97 GVATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIEL 138
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 59 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN----LEICVGDLELVHGMDYVLPLMEMG 114
G+ T P+RG CV+ G LED V++ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 115 EECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ ++ I+ + YG G P IPP A L + + L
Sbjct: 70 QRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 49 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGD-LELVHGMDYV 107
G I ++I GE +P G + ++ G +D + EI G+ L+L +G++
Sbjct: 168 GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERA 227
Query: 108 LPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHS 151
+ ME GE + + + +G G+ IPP A+L Y L L S
Sbjct: 228 IQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKS 271
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K I + G P GD + G L D D+ ++ D +G E++ D
Sbjct: 53 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI 112
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M++GE C I + YG G P K IPP A L + + L
Sbjct: 113 AIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 154
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 59 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLM 111
G+ T P+RG CV+ G LED + FD+ + +G E++ G++ + M
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQM 66
Query: 112 EMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 67 SVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 59 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 114
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVG 69
Query: 115 EECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ ++ I+ + YG G P IPP A L + + L
Sbjct: 70 QRAKLTISPDYAYGATGHPG-IIPPNATLIFDVEL 103
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 48 SGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLEL 100
S ++KK+ G+ T+PQ G + G+ D + FD+ + +G E+
Sbjct: 23 SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDG---KQFDSSRSRGKPFQFTLGAGEV 79
Query: 101 VHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
+ G D + M +GE+ I + YG++G P IPP A L + + L +V
Sbjct: 80 IKGWDQGVATMTLGEKALFTIPYQLAYGERGYPP-VIPPKATLVFEVELLAV 130
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 59 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLM 111
G+ T P+RG CV+ G LED + FD+ + +G E++ G + + M
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQM 66
Query: 112 EMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 67 SVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 59 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 114
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 115 EECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ ++ I+ + YG G P IPP A L + + L
Sbjct: 70 QRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 59 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 114
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 115 EECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ ++ I+ + YG G P IPP A L + + L
Sbjct: 70 QRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 59 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLM 111
G+ T P+RG CV+ G LED + FD+ + +G E++ G + + M
Sbjct: 12 GDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQM 68
Query: 112 EMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 69 SVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 105
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 59 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN----LEICVGDLELVHGMDYVLPLMEMG 114
G+ T P+RG CV+ G LED +++ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 115 EECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ ++ I+ + YG G P IPP A L + + L
Sbjct: 70 QRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K I + G P GD + G L D D+ ++ D +G E++ D
Sbjct: 32 VLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI 91
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M++GE C+I + YG G P K IPP A L + + L
Sbjct: 92 AVATMKVGELCRITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 133
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K I + G P GD + G L D D+ ++ D +G E++ D
Sbjct: 33 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI 92
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M++GE C I + YG G P K IPP A L + + L
Sbjct: 93 AIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 134
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K I + G P GD + G L D D+ ++ D +G E++ D
Sbjct: 37 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI 96
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M++GE C I + YG G P K IPP A L + + L
Sbjct: 97 AIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 138
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 59 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 114
G+ T P+RG CV+ G LED D+ + + +G E++ G + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVG 69
Query: 115 EECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ ++ I+ + YG G P IPP A L + + L
Sbjct: 70 QRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 37 EVEDEWVDILGSGHIKKKITKHGEP--DTRPQRGDLCVISGFGKLEDDTLV--ETFDN-- 90
E E E V++ G + K I K G+ + P++G+ + GKLE V +FD
Sbjct: 4 EQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNV 63
Query: 91 -LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ + E++ G D + M E+C + I + +GYGD+G +SIP + L + + L
Sbjct: 64 PFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG-CGESIPGNSVLLFEIEL 122
Query: 150 HS 151
S
Sbjct: 123 LS 124
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 37 EVEDEWVDILGSGHIKKKITKHGEP--DTRPQRGDLCVISGFGKLEDDTLV--ETFDN-- 90
E E E V++ G + K I K G+ + P++G+ + GKLE V +FD
Sbjct: 4 EQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNV 63
Query: 91 -LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ + E++ G D + M E+C + I + +GYGD+G +SIP + L + + L
Sbjct: 64 PFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG-CGESIPGNSVLLFEIEL 122
Query: 150 HS 151
S
Sbjct: 123 LS 124
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 59 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLM 111
G+ T P+RG CV+ G LED + FD+ + +G E++ G + M
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQM 66
Query: 112 EMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 67 SVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 59 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 114
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 115 EECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ ++ I+ + YG G P IPP A L + + L
Sbjct: 70 QRAKLTISPDYAYGATGVPG-IIPPHATLVFDVEL 103
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 41 EWVDILGSGHIKKKITKHGE--PDTRPQRGDLCVISGFGKLEDDTLVETFDN-------L 91
E V + G + K I + GE + P++G+ + GKLE V FD+
Sbjct: 7 EQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKV--FDSSRERNVPF 64
Query: 92 EICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHS 151
+ +G E++ G D + M E+C + + +++GYG++G +SIP + L + + L S
Sbjct: 65 KFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEG-CGESIPGNSVLIFEIELIS 123
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 59 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLM 111
G+ T P+ G CV+ G LED + FD+ + +G E++ G + + M
Sbjct: 10 GDGRTFPKAGQTCVVHYTGMLEDG---KKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQM 66
Query: 112 EMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 67 SVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 59 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN----LEICVGDLELVHGMDYVLPLMEMG 114
G+ T P+ G + V+ G L D + ++ VG E++ G D + M +G
Sbjct: 11 GDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVG 70
Query: 115 EECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
+ ++ + + YG +G P IPP A L + + L V
Sbjct: 71 QRAKLVCSPDYAYGSRGHPG-VIPPNATLTFDVELLRV 107
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 59 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 114
G+ T P++G CV+ G L++ D+ + + +G E++ G + M +G
Sbjct: 10 GDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLG 69
Query: 115 EECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ ++ T YG G P IPP A L + + L
Sbjct: 70 QRAKLTCTPDVAYGATGHPG-VIPPNATLIFDVEL 103
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 64 RPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLMEMGEE 116
+ ++GD+ + GKLED T FD+ +G +++ G D L M GE+
Sbjct: 5 KSRKGDVLHMHYTGKLEDGT---EFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEK 61
Query: 117 CQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
++ I + GYG++G P K IP GA L + + L +
Sbjct: 62 RKLVIPSELGYGERGAPPK-IPGGATLVFEVELLKI 96
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 29/219 (13%)
Query: 1 MDESISNGNNGDLNSFEIVDKADVEENPVIPDKPEEEVE-----DEWVDILGSGHIKKKI 55
MDES+ + EIV E + V+ +P +E D ++L + K+I
Sbjct: 1 MDESLEHQTQTHDQESEIV----TEGSAVVHSEPSQEGNVPPKVDSEAEVLDE-KVSKQI 55
Query: 56 TKHGEPDTRPQRGDLCVI--SGFGKLEDDTLVETFDN---LEICVG-DLELVHGMDYVLP 109
K G ++P + C + + K +T+ +E+ +G + + + G+ +
Sbjct: 56 IKEGH-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVA 114
Query: 110 LMEMGEECQIEITARFGYGDKGEPS-KSIPPGAKLYYSLTLHSVLPDFD-------LAEL 161
M+ GE + + YG +G S ++PP A L Y + + FD +++
Sbjct: 115 SMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEV----IGFDETKEGKARSDM 170
Query: 162 PVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFL 200
VE+R+ +RK GN + A+Q Y ++ ++
Sbjct: 171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM 209
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 88 FDNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGE 132
++ LE VG+ +L+ G + + ME+G+E ++I A YG++ E
Sbjct: 42 YEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNE 86
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K + + G + P GD + GKL + D+ + + +G +++ D
Sbjct: 37 VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI 96
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M+ GE C + + YG G K IP A L++ + L
Sbjct: 97 GVATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIEL 138
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K + + G + P GD + GKL + D+ + + +G +++ D
Sbjct: 37 VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI 96
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M+ GE C + + YG G K IP A L++ + L
Sbjct: 97 GVATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIEL 138
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K + + G + P GD + GKL + D+ + + +G +++ D
Sbjct: 21 VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI 80
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M+ GE C + + YG G K IP A L++ + L
Sbjct: 81 GVATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIEL 122
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 106
+ K + + G + P GD + GKL + D+ + + +G +++ D
Sbjct: 21 VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI 80
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
+ M+ GE C + + YG G K IP A L++ + L
Sbjct: 81 GVATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIEL 122
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 89 DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLT 148
D E +G ++ G D + M++G ++ I + GYG +G IPP A L + +
Sbjct: 147 DPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARG-AGGVIPPNATLVFEVE 205
Query: 149 LHSV 152
L V
Sbjct: 206 LLDV 209
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 64 RPQRGDLCVISGFGKLEDD-TLVETFDN------LEICVGDLELVHGMDYVLPLMEMGEE 116
+ + GDL ++ G LE D +L + + +G LE + G D L M +GE+
Sbjct: 28 KTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK 87
Query: 117 CQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 149
++ I GYG +G+ IPP + L +++ L
Sbjct: 88 RKLIIPPALGYGKEGK--GKIPPESTLIFNIDL 118
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 89 DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLT 148
D +G ++ G D + M++G ++ I + GYG +G + IPP A L + +
Sbjct: 147 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARG-AAGVIPPNATLVFEVE 205
Query: 149 LHSV 152
L V
Sbjct: 206 LLDV 209
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 89 DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLT 148
D +G ++ G D + M++G ++ I + GYG +G IPP A L + +
Sbjct: 51 DPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA-GGVIPPNATLVFEVE 109
Query: 149 LHSV 152
L V
Sbjct: 110 LLDV 113
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 89 DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLT 148
D +G ++ G D + M++G ++ I + GYG +G IPP A L + +
Sbjct: 147 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARG-AGGVIPPNATLVFEVE 205
Query: 149 LHSV 152
L V
Sbjct: 206 LLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 89 DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLT 148
D +G ++ G D + M++G ++ I + GYG +G IPP A L + +
Sbjct: 147 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARG-AGGVIPPNATLVFEVE 205
Query: 149 LHSV 152
L V
Sbjct: 206 LLDV 209
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 89 DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLT 148
D +G ++ G D + M++G ++ I + GYG +G IPP A L + +
Sbjct: 147 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARG-AGGVIPPNATLVFEVE 205
Query: 149 LHSV 152
L V
Sbjct: 206 LLDV 209
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 89 DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLT 148
D +G ++ G D + M++G ++ I + GYG +G IPP A L + +
Sbjct: 55 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA-GGVIPPNATLVFEVE 113
Query: 149 LHSV 152
L V
Sbjct: 114 LLDV 117
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 89 DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLT 148
D +G ++ G D + M++G ++ I + GYG +G IPP A L + +
Sbjct: 71 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA-GGVIPPNATLVFEVE 129
Query: 149 LHSV 152
L V
Sbjct: 130 LLDV 133
>pdb|1Z01|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
Length = 446
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 88 FDNLEICV-GDLELVHGMDYVLPL 110
FDN I V D +VH MD+VLPL
Sbjct: 217 FDNAHILVHKDNTIVHAMDWVLPL 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,347,459
Number of Sequences: 62578
Number of extensions: 337229
Number of successful extensions: 632
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 67
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)