Query psy1750
Match_columns 214
No_of_seqs 211 out of 1716
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:08:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543|consensus 100.0 1.8E-39 3.9E-44 278.2 17.3 192 1-209 51-247 (397)
2 KOG0544|consensus 100.0 3.9E-31 8.4E-36 182.5 11.4 103 50-153 2-108 (108)
3 KOG0549|consensus 100.0 1E-29 2.2E-34 196.6 14.9 154 1-157 12-180 (188)
4 COG0545 FkpA FKBP-type peptidy 99.9 6.7E-27 1.4E-31 184.5 11.9 103 47-153 99-205 (205)
5 TIGR03516 ppisom_GldI peptidyl 99.9 5.4E-23 1.2E-27 162.5 13.4 106 47-153 67-176 (177)
6 KOG0552|consensus 99.9 4.7E-23 1E-27 166.2 11.7 106 45-153 116-226 (226)
7 PRK11570 peptidyl-prolyl cis-t 99.9 1.9E-22 4.1E-27 163.0 13.4 103 47-153 100-206 (206)
8 PF00254 FKBP_C: FKBP-type pep 99.9 1.9E-21 4.2E-26 138.5 11.7 89 62-150 2-94 (94)
9 PRK10902 FKBP-type peptidyl-pr 99.8 3.1E-20 6.8E-25 155.4 13.7 104 47-155 144-251 (269)
10 KOG0545|consensus 99.8 1.6E-21 3.5E-26 158.1 3.7 154 49-202 10-210 (329)
11 PRK15095 FKBP-type peptidyl-pr 99.6 2.5E-14 5.4E-19 111.0 10.5 67 64-130 4-74 (156)
12 COG1047 SlpA FKBP-type peptidy 99.5 9.3E-13 2E-17 102.6 11.5 103 64-173 2-154 (174)
13 PRK10737 FKBP-type peptidyl-pr 99.4 4.9E-13 1.1E-17 106.9 9.0 66 65-130 3-71 (196)
14 KOG0543|consensus 99.2 1.9E-11 4E-16 105.9 6.9 79 57-150 1-82 (397)
15 TIGR00115 tig trigger factor. 99.1 1.6E-09 3.5E-14 96.3 11.4 85 64-155 146-232 (408)
16 PRK01490 tig trigger factor; P 99.0 4.1E-09 8.9E-14 94.5 11.4 85 64-155 157-243 (435)
17 KOG0544|consensus 98.9 6E-10 1.3E-14 77.6 3.2 45 1-45 60-107 (108)
18 COG0544 Tig FKBP-type peptidyl 98.9 5.8E-09 1.3E-13 93.3 9.4 91 65-163 158-250 (441)
19 PF00254 FKBP_C: FKBP-type pep 97.7 2.2E-05 4.8E-10 55.3 2.6 43 1-43 48-94 (94)
20 KOG0549|consensus 97.7 1.1E-05 2.4E-10 63.2 0.9 58 93-155 1-58 (188)
21 TIGR00990 3a0801s09 mitochondr 97.3 0.0002 4.3E-09 67.0 3.6 65 136-201 94-158 (615)
22 KOG0547|consensus 97.2 0.00022 4.7E-09 63.9 3.0 43 160-202 105-147 (606)
23 KOG4648|consensus 97.1 0.00027 5.8E-09 61.1 2.4 39 163-201 90-128 (536)
24 KOG4234|consensus 97.1 0.00048 1.1E-08 55.4 3.2 39 166-204 91-129 (271)
25 PRK10902 FKBP-type peptidyl-pr 97.0 0.00068 1.5E-08 57.2 4.0 47 1-47 202-250 (269)
26 KOG0553|consensus 95.7 0.008 1.7E-07 51.0 2.6 44 161-204 72-115 (304)
27 KOG0551|consensus 95.4 0.008 1.7E-07 51.8 1.8 34 168-201 79-112 (390)
28 PRK15095 FKBP-type peptidyl-pr 94.9 0.2 4.3E-06 38.8 8.1 23 1-23 48-71 (156)
29 PF00515 TPR_1: Tetratricopept 94.0 0.044 9.6E-07 30.5 1.9 29 172-200 3-31 (34)
30 PF07719 TPR_2: Tetratricopept 93.9 0.046 1E-06 30.2 1.9 29 172-200 3-31 (34)
31 KOG0546|consensus 93.7 0.055 1.2E-06 47.0 2.9 41 163-203 215-255 (372)
32 PRK10737 FKBP-type peptidyl-pr 93.5 0.35 7.5E-06 39.0 7.0 23 1-23 45-68 (196)
33 KOG0548|consensus 93.5 0.052 1.1E-06 49.3 2.4 32 169-200 357-388 (539)
34 PF13176 TPR_7: Tetratricopept 93.4 0.054 1.2E-06 30.9 1.7 26 174-199 3-28 (36)
35 KOG0550|consensus 92.9 0.072 1.6E-06 47.3 2.3 34 166-199 245-278 (486)
36 PF13414 TPR_11: TPR repeat; P 91.5 0.093 2E-06 34.0 1.1 31 170-200 3-33 (69)
37 COG1047 SlpA FKBP-type peptidy 89.3 2.7 5.9E-05 33.1 7.7 23 1-23 46-69 (174)
38 PF13181 TPR_8: Tetratricopept 86.8 0.56 1.2E-05 25.7 1.9 29 172-200 3-31 (34)
39 PF13374 TPR_10: Tetratricopep 83.9 0.87 1.9E-05 25.9 1.9 34 171-204 3-36 (42)
40 PF13424 TPR_12: Tetratricopep 82.5 0.81 1.7E-05 30.2 1.5 35 169-203 4-38 (78)
41 PF04212 MIT: MIT (microtubule 82.0 1.3 2.8E-05 29.0 2.3 31 172-202 7-37 (69)
42 cd02681 MIT_calpain7_1 MIT: do 80.2 1.6 3.5E-05 29.6 2.3 34 170-203 6-39 (76)
43 smart00028 TPR Tetratricopepti 80.0 1.1 2.3E-05 22.7 1.2 26 174-199 5-30 (34)
44 cd02683 MIT_1 MIT: domain cont 79.5 1.6 3.5E-05 29.6 2.2 31 173-203 9-39 (77)
45 cd02684 MIT_2 MIT: domain cont 78.0 1.8 4E-05 29.1 2.1 36 169-204 5-40 (75)
46 cd02678 MIT_VPS4 MIT: domain c 76.1 2.6 5.6E-05 28.2 2.4 36 168-203 4-39 (75)
47 cd02682 MIT_AAA_Arch MIT: doma 75.2 2.8 6E-05 28.4 2.3 34 169-202 5-38 (75)
48 PF13432 TPR_16: Tetratricopep 74.3 1.4 3.1E-05 27.9 0.7 24 176-199 3-26 (65)
49 KOG0550|consensus 74.2 2.9 6.3E-05 37.5 2.8 41 163-203 42-82 (486)
50 PF13424 TPR_12: Tetratricopep 73.2 2.5 5.4E-05 27.8 1.8 35 167-201 43-77 (78)
51 cd02677 MIT_SNX15 MIT: domain 73.1 2.7 5.9E-05 28.3 1.9 31 174-204 10-40 (75)
52 KOG2114|consensus 70.9 2.6 5.6E-05 40.8 1.8 36 169-204 367-402 (933)
53 cd02656 MIT MIT: domain contai 70.5 4.2 9.2E-05 27.0 2.4 32 173-204 9-40 (75)
54 PF13428 TPR_14: Tetratricopep 68.9 3.6 7.9E-05 24.1 1.6 26 175-200 6-31 (44)
55 smart00745 MIT Microtubule Int 68.0 5.2 0.00011 26.6 2.4 30 175-204 13-42 (77)
56 cd02680 MIT_calpain7_2 MIT: do 67.9 4.8 0.0001 27.2 2.2 28 175-202 11-38 (75)
57 PF14559 TPR_19: Tetratricopep 62.5 4.6 9.9E-05 25.6 1.3 21 180-200 1-21 (68)
58 PF04010 DUF357: Protein of un 61.1 8.9 0.00019 25.9 2.5 39 163-201 28-66 (75)
59 PLN03098 LPA1 LOW PSII ACCUMUL 58.8 7.6 0.00017 35.2 2.4 37 164-200 69-105 (453)
60 KOG2003|consensus 57.7 7 0.00015 35.7 2.0 36 171-206 238-273 (840)
61 PF13432 TPR_16: Tetratricopep 57.2 8.8 0.00019 24.1 1.9 31 169-199 30-60 (65)
62 TIGR00115 tig trigger factor. 55.8 14 0.0003 32.9 3.6 21 1-21 187-207 (408)
63 PF10516 SHNi-TPR: SHNi-TPR; 54.6 8.9 0.00019 22.2 1.5 27 177-203 8-34 (38)
64 COG1278 CspC Cold shock protei 54.1 22 0.00048 23.4 3.4 41 58-98 13-55 (67)
65 PF09976 TPR_21: Tetratricopep 53.6 7.1 0.00015 29.2 1.2 25 173-197 121-145 (145)
66 PF09122 DUF1930: Domain of un 53.3 19 0.00041 23.4 2.9 23 102-124 35-57 (68)
67 COG0425 SirA Predicted redox p 53.1 13 0.00029 25.1 2.3 54 3-59 24-77 (78)
68 PF13414 TPR_11: TPR repeat; P 53.1 8.7 0.00019 24.3 1.4 30 170-199 37-67 (69)
69 PF13174 TPR_6: Tetratricopept 49.6 8.8 0.00019 20.2 0.9 25 176-200 6-30 (33)
70 PF07720 TPR_3: Tetratricopept 48.6 14 0.00031 21.0 1.6 20 175-194 6-25 (36)
71 PF08631 SPO22: Meiosis protei 48.0 20 0.00044 30.0 3.2 43 160-202 25-68 (278)
72 PRK10370 formate-dependent nit 47.0 14 0.00031 29.4 2.1 32 171-202 145-176 (198)
73 PF14938 SNAP: Soluble NSF att 46.9 14 0.0003 31.1 2.0 37 168-204 112-149 (282)
74 PF13371 TPR_9: Tetratricopept 46.4 14 0.00029 23.6 1.5 32 170-201 29-60 (73)
75 KOG0553|consensus 45.7 12 0.00026 32.1 1.4 30 170-199 149-178 (304)
76 PF10602 RPN7: 26S proteasome 44.5 16 0.00034 28.7 1.9 33 170-202 36-68 (177)
77 PRK02603 photosystem I assembl 42.9 20 0.00043 27.5 2.2 32 168-199 33-64 (172)
78 KOG0548|consensus 42.6 19 0.00042 33.2 2.4 35 166-200 220-254 (539)
79 smart00386 HAT HAT (Half-A-TPR 41.9 32 0.00069 17.6 2.4 18 184-201 1-18 (33)
80 PF08631 SPO22: Meiosis protei 40.0 32 0.00069 28.9 3.2 39 160-198 236-274 (278)
81 KOG2003|consensus 40.0 25 0.00054 32.3 2.6 26 173-198 493-518 (840)
82 PRK01490 tig trigger factor; P 39.1 36 0.00078 30.5 3.6 21 1-21 198-218 (435)
83 PF13041 PPR_2: PPR repeat fam 36.7 30 0.00065 20.5 1.9 21 179-199 12-32 (50)
84 PF12895 Apc3: Anaphase-promot 36.4 21 0.00045 23.7 1.2 21 176-196 64-84 (84)
85 PF00639 Rotamase: PPIC-type P 36.3 38 0.00083 23.3 2.7 26 95-120 57-82 (95)
86 cd00189 TPR Tetratricopeptide 36.1 25 0.00054 21.9 1.6 25 176-200 40-64 (100)
87 PF02071 NSF: Aromatic-di-Alan 35.9 19 0.00042 15.4 0.7 11 189-199 1-11 (12)
88 PRK00809 hypothetical protein; 34.1 1.3E+02 0.0029 22.8 5.5 26 99-124 23-48 (144)
89 PF10579 Rapsyn_N: Rapsyn N-te 33.9 38 0.00083 23.1 2.2 35 169-203 5-39 (80)
90 PHA02122 hypothetical protein 33.4 82 0.0018 20.0 3.4 42 38-86 17-58 (65)
91 PRK15359 type III secretion sy 32.6 26 0.00057 26.2 1.4 27 173-199 61-87 (144)
92 cd01090 Creatinase Creatine am 32.5 97 0.0021 25.1 4.8 53 62-117 74-135 (228)
93 TIGR02795 tol_pal_ybgF tol-pal 30.7 33 0.00072 23.6 1.6 21 177-197 9-29 (119)
94 PF13838 Clathrin_H_link: Clat 29.7 25 0.00054 23.1 0.7 22 174-195 10-31 (66)
95 KOG1310|consensus 29.3 39 0.00084 31.6 2.1 38 164-201 368-405 (758)
96 cd02679 MIT_spastin MIT: domai 29.3 52 0.0011 22.4 2.2 26 183-208 21-46 (79)
97 cd04454 S1_Rrp4_like S1_Rrp4_l 28.5 1.8E+02 0.0038 19.2 6.7 59 64-122 3-62 (82)
98 PLN03088 SGT1, suppressor of 27.7 42 0.00091 29.3 2.0 31 171-201 71-101 (356)
99 TIGR00756 PPR pentatricopeptid 25.3 69 0.0015 16.5 2.0 19 180-198 10-28 (35)
100 PF01535 PPR: PPR repeat; Int 24.7 59 0.0013 16.5 1.6 20 179-198 9-28 (31)
101 PF02184 HAT: HAT (Half-A-TPR) 24.7 78 0.0017 17.7 2.0 16 184-199 1-16 (32)
102 PF15469 Sec5: Exocyst complex 24.3 43 0.00094 26.1 1.3 25 179-203 95-119 (182)
103 PRK02603 photosystem I assembl 24.1 59 0.0013 24.8 2.1 30 171-200 73-102 (172)
104 CHL00033 ycf3 photosystem I as 24.0 77 0.0017 24.0 2.7 33 169-201 34-66 (168)
105 TIGR02925 cis_trans_EpsD pepti 24.0 66 0.0014 25.9 2.4 29 97-127 189-217 (232)
106 PRK15359 type III secretion sy 23.7 58 0.0013 24.3 1.9 33 171-203 93-125 (144)
107 COG4922 Uncharacterized protei 23.4 1.6E+02 0.0035 21.7 4.0 43 65-108 71-114 (129)
108 PRK09890 cold shock protein Cs 22.9 1E+02 0.0023 20.1 2.8 40 58-97 16-57 (70)
109 TIGR00501 met_pdase_II methion 22.7 2.3E+02 0.0049 24.1 5.5 52 63-117 73-130 (295)
110 cd01088 MetAP2 Methionine Amin 22.1 1.8E+02 0.004 24.5 4.8 53 62-117 68-126 (291)
111 TIGR02552 LcrH_SycD type III s 22.0 72 0.0016 22.7 2.1 26 173-198 20-45 (135)
112 PTZ00053 methionine aminopepti 21.8 1.7E+02 0.0037 26.9 4.8 52 63-117 232-289 (470)
113 TIGR00495 crvDNA_42K 42K curve 21.6 3.1E+02 0.0066 24.5 6.3 52 63-117 99-164 (389)
114 PF08969 USP8_dimer: USP8 dime 21.3 1.2E+02 0.0027 21.7 3.2 45 158-202 26-70 (115)
115 TIGR03302 OM_YfiO outer membra 21.1 78 0.0017 25.2 2.3 25 174-198 37-61 (235)
116 cd03420 SirA_RHOD_Pry_redox Si 21.1 1.2E+02 0.0026 19.5 2.8 21 104-124 16-36 (69)
117 smart00671 SEL1 Sel1-like repe 20.9 1.1E+02 0.0023 16.2 2.2 17 182-198 17-33 (36)
118 KOG4626|consensus 20.5 63 0.0014 31.0 1.7 31 169-199 285-315 (966)
119 PRK08671 methionine aminopepti 20.3 2.6E+02 0.0056 23.6 5.4 51 63-116 70-126 (291)
120 KOG1840|consensus 20.2 63 0.0014 30.0 1.7 39 169-207 240-278 (508)
121 PF13525 YfiO: Outer membrane 20.2 1.1E+02 0.0024 24.2 2.9 34 169-202 140-173 (203)
No 1
>KOG0543|consensus
Probab=100.00 E-value=1.8e-39 Score=278.19 Aligned_cols=192 Identities=28% Similarity=0.519 Sum_probs=174.5
Q ss_pred ChhhhhccCCCceEEEEecCCCCCCCCCCCCCCCcccccceeEEeecCCcEEEEEEeCCCC-CCCCCCCCEEEEEEEEEE
Q psy1750 1 MDESISNGNNGDLNSFEIVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKL 79 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~~~~~~~~~~p~~~~~~~~~~~~d~~~d~~v~k~il~~G~g-~~~p~~g~~V~v~y~~~~ 79 (214)
||.|+++|++|+ .++||.||+++++.|++++. ||+|+|+|+++|.+ ...|..|..|++||.+++
T Consensus 51 ~~~gv~tm~~g~-----------~~~pp~ip~~a~l~fe~el~----Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~ 115 (397)
T KOG0543|consen 51 WDLGVATMKKGE-----------AGSPPKIPSNATLLFEVELL----DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL 115 (397)
T ss_pred cccccccccccc-----------cCCCCCCCCCcceeeeeccc----CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE
Confidence 678888888843 57799999999999998776 89999999999997 689999999999999999
Q ss_pred cCCcEEEec-cceEEEeCC-CccchhHHHHhcCcCCCcEEEEEEecCccccCC-CCCCCCCCCCCeEEEEEEecccc-CC
Q psy1750 80 EDDTLVETF-DNLEICVGD-LELVHGMDYVLPLMEMGEECQIEITARFGYGDK-GEPSKSIPPGAKLYYSLTLHSVL-PD 155 (214)
Q Consensus 80 ~dg~~~~~~-~~~~~~lG~-~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~-g~~~~~ip~~~~l~f~IeL~~v~-~~ 155 (214)
.|+ +|+++ ..|.|.+|+ ..++.||+.||..|++||.+.|+|+|.|+||.. ++++ .||||++|.|+|+|++|. ..
T Consensus 116 ~~~-~f~~~~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p-~IPPnA~l~yEVeL~~f~~~~ 193 (397)
T KOG0543|consen 116 EDG-VFDQRELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPP-LIPPNATLLYEVELLDFELKE 193 (397)
T ss_pred CCc-ceeccccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCC-CCCCCceEEEEEEEEeeecCc
Confidence 877 66654 467888888 689999999999999999999999999999944 4555 899999999999999999 78
Q ss_pred CCCCCCChhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhccCCCCCCCC
Q psy1750 156 FDLAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTNN 209 (214)
Q Consensus 156 ~~~~~l~~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~ 209 (214)
++.|.|..+|+++.|.++|++||.+||+++|..|+.+|+||+++|+++...+..
T Consensus 194 ~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~e 247 (397)
T KOG0543|consen 194 DESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEE 247 (397)
T ss_pred ccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHH
Confidence 899999999999999999999999999999999999999999999999988753
No 2
>KOG0544|consensus
Probab=99.97 E-value=3.9e-31 Score=182.51 Aligned_cols=103 Identities=26% Similarity=0.544 Sum_probs=97.9
Q ss_pred cEEEEEEeCCCCCCCCCCCCEEEEEEEEEEcCCcEEEec----cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCc
Q psy1750 50 HIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARF 125 (214)
Q Consensus 50 ~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~dg~~~~~~----~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ 125 (214)
|+.+++|++|++-..|+.|++|++||++.+.||+.||++ .||.|.+|.+++|.||++++..|.+||+++++|+|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 488999999998799999999999999999999999874 4999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCeEEEEEEecccc
Q psy1750 126 GYGDKGEPSKSIPPGAKLYYSLTLHSVL 153 (214)
Q Consensus 126 ayG~~g~~~~~ip~~~~l~f~IeL~~v~ 153 (214)
|||..|.|. .||||++|+|+|||++++
T Consensus 82 aYG~~G~p~-~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 82 AYGPRGHPG-GIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccCCCCCCC-ccCCCcEEEEEEEEEecC
Confidence 999999887 899999999999999874
No 3
>KOG0549|consensus
Probab=99.97 E-value=1e-29 Score=196.56 Aligned_cols=154 Identities=22% Similarity=0.266 Sum_probs=124.1
Q ss_pred ChhhhhccCCCceEEEEecCC-CCCCCCCCCCCCCcccccceeEE---------eecCCcEEEEEEeCCC-CCCCCCCCC
Q psy1750 1 MDESISNGNNGDLNSFEIVDK-ADVEENPVIPDKPEEEVEDEWVD---------ILGSGHIKKKITKHGE-PDTRPQRGD 69 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~-~~~~~~~~~p~~~~~~~~~~~~d---------~~~d~~v~k~il~~G~-g~~~p~~g~ 69 (214)
||.++.+||.||++.+.++|+ +++ .......-.+.+...++. ...+..+.-.+++.-. +..+.+.||
T Consensus 12 m~~~~~g~c~ge~rkvv~pp~l~fg--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~p~~C~~kak~GD 89 (188)
T KOG0549|consen 12 MDQALEGMCNGEKRKVVIPPHLGFG--EGGRGDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKKPEECPEKAKKGD 89 (188)
T ss_pred HHHHhhhhhccccceeccCCccccc--ccccccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEECCccccccccCCC
Confidence 789999999999999999999 442 111121222233333222 2234566666666522 467789999
Q ss_pred EEEEEEEEEEcCCcEEEec----cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCCCCCCCCCCCCCeEEE
Q psy1750 70 LCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYY 145 (214)
Q Consensus 70 ~V~v~y~~~~~dg~~~~~~----~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~g~~~~~ip~~~~l~f 145 (214)
.+.+||++.++||++||++ +|++|++|.+++|+|||++|.+||+||++.++|||++|||+.|.++ .||++++|+|
T Consensus 90 ~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~-~IP~~A~LiF 168 (188)
T KOG0549|consen 90 TLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAPP-KIPGDAVLIF 168 (188)
T ss_pred EEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCCCC-CCCCCeeEEE
Confidence 9999999999999999973 5999999999999999999999999999999999999999999998 6999999999
Q ss_pred EEEeccccCCCC
Q psy1750 146 SLTLHSVLPDFD 157 (214)
Q Consensus 146 ~IeL~~v~~~~~ 157 (214)
+|||+++.+.+.
T Consensus 169 diELv~i~~~~~ 180 (188)
T KOG0549|consen 169 DIELVKIERGPP 180 (188)
T ss_pred EEEEEEeecCCC
Confidence 999999998643
No 4
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.7e-27 Score=184.52 Aligned_cols=103 Identities=27% Similarity=0.506 Sum_probs=97.1
Q ss_pred cCCcEEEEEEeCCCCCCCCCCCCEEEEEEEEEEcCCcEEEec----cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEe
Q psy1750 47 GSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGMDYVLPLMEMGEECQIEIT 122 (214)
Q Consensus 47 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~dg~~~~~~----~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~ 122 (214)
..+|+.+++++.|+ +..|+.+++|++||+|++.||++||++ +|+.|.+| .+|+||+++|.+|++|++++++||
T Consensus 99 ~~sgl~y~~~~~G~-G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP 175 (205)
T COG0545 99 LPSGLQYKVLKAGD-GAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP 175 (205)
T ss_pred CCCCcEEEEEeccC-CCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence 46789999999998 789999999999999999999999974 59999998 899999999999999999999999
Q ss_pred cCccccCCCCCCCCCCCCCeEEEEEEecccc
Q psy1750 123 ARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL 153 (214)
Q Consensus 123 ~~~ayG~~g~~~~~ip~~~~l~f~IeL~~v~ 153 (214)
|++|||..|.++ .||||++|+|+|+|+++.
T Consensus 176 ~~laYG~~g~~g-~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 176 PELAYGERGVPG-VIPPNSTLVFEVELLDVK 205 (205)
T ss_pred chhccCcCCCCC-CCCCCCeEEEEEEEEecC
Confidence 999999999988 699999999999999874
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.90 E-value=5.4e-23 Score=162.48 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=96.7
Q ss_pred cCCcEEEEEEeCCCC-CCCCCCCCEEEEEEEEEEcCCcEEEec---cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEe
Q psy1750 47 GSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKLEDDTLVETF---DNLEICVGDLELVHGMDYVLPLMEMGEECQIEIT 122 (214)
Q Consensus 47 ~d~~v~k~il~~G~g-~~~p~~g~~V~v~y~~~~~dg~~~~~~---~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~ 122 (214)
.+.|+.+.++..+.| +..|+.||.|++||++++.||++|++. .|+.|.+|.+++++||+++|.+|++||+++|.+|
T Consensus 67 t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP 146 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLFP 146 (177)
T ss_pred CCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEEC
Confidence 567899998876443 578999999999999999999998864 4899999999999999999999999999999999
Q ss_pred cCccccCCCCCCCCCCCCCeEEEEEEecccc
Q psy1750 123 ARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL 153 (214)
Q Consensus 123 ~~~ayG~~g~~~~~ip~~~~l~f~IeL~~v~ 153 (214)
|++|||..|.+. .||||++|+|+|+|++|.
T Consensus 147 ~~~AYG~~g~~~-~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 147 SHKAYGYYGDQN-KIGPNLPIISTVTLLNIK 176 (177)
T ss_pred HHHcCCCCCCCC-CcCcCCcEEEEEEEEEec
Confidence 999999999876 799999999999999986
No 6
>KOG0552|consensus
Probab=99.89 E-value=4.7e-23 Score=166.24 Aligned_cols=106 Identities=25% Similarity=0.459 Sum_probs=99.5
Q ss_pred eecCCcEEEEEEeCCCCCCCCCCCCEEEEEEEEEEc-CCcEEEec---cceE-EEeCCCccchhHHHHhcCcCCCcEEEE
Q psy1750 45 ILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLE-DDTLVETF---DNLE-ICVGDLELVHGMDYVLPLMEMGEECQI 119 (214)
Q Consensus 45 ~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~-dg~~~~~~---~~~~-~~lG~~~~~~gle~~l~~M~~GE~~~~ 119 (214)
.+-.+||+++-++.|+ +..|..|++|.+||.+++. +|++|+++ .|+. |++|.+++|+||+.+|.+|++|.+++|
T Consensus 116 ~tl~~Gl~y~D~~vG~-G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGS-GPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecC-CCCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 4567899999999999 7999999999999999998 89999974 5888 999999999999999999999999999
Q ss_pred EEecCccccCCCCCCCCCCCCCeEEEEEEecccc
Q psy1750 120 EITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL 153 (214)
Q Consensus 120 ~i~~~~ayG~~g~~~~~ip~~~~l~f~IeL~~v~ 153 (214)
+|||.+|||..|.+. ||||++|+|+|||+++.
T Consensus 195 iIPp~lgYg~~g~~~--IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 195 IIPPELGYGKKGVPE--IPPNSTLVFDVELLSVK 226 (226)
T ss_pred EeCccccccccCcCc--CCCCCcEEEEEEEEecC
Confidence 999999999999984 99999999999999874
No 7
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=1.9e-22 Score=162.97 Aligned_cols=103 Identities=27% Similarity=0.471 Sum_probs=95.1
Q ss_pred cCCcEEEEEEeCCCCCCCCCCCCEEEEEEEEEEcCCcEEEec----cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEe
Q psy1750 47 GSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGMDYVLPLMEMGEECQIEIT 122 (214)
Q Consensus 47 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~dg~~~~~~----~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~ 122 (214)
.+.|+.++|+++|+ +..|..+|.|+|||++++.||++|+++ .|+.|.+| .+++||+++|.+|++|++++|.||
T Consensus 100 t~sGl~y~vi~~G~-G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~IP 176 (206)
T PRK11570 100 TESGLQFRVLTQGE-GAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTIP 176 (206)
T ss_pred CCCCcEEEEEeCCC-CCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEEC
Confidence 45689999999999 578999999999999999999999964 58999996 589999999999999999999999
Q ss_pred cCccccCCCCCCCCCCCCCeEEEEEEecccc
Q psy1750 123 ARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL 153 (214)
Q Consensus 123 ~~~ayG~~g~~~~~ip~~~~l~f~IeL~~v~ 153 (214)
|++|||..|.++ .|||+++|+|+|||++|.
T Consensus 177 ~~lAYG~~g~~~-~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 177 HELAYGERGAGA-SIPPFSTLVFEVELLEIL 206 (206)
T ss_pred HHHcCCCCCCCC-CcCCCCeEEEEEEEEEEC
Confidence 999999999876 799999999999999873
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.87 E-value=1.9e-21 Score=138.45 Aligned_cols=89 Identities=27% Similarity=0.539 Sum_probs=83.1
Q ss_pred CCCCCCCCEEEEEEEEEEcCCcEEEec----cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCCCCCCCCC
Q psy1750 62 DTRPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSI 137 (214)
Q Consensus 62 ~~~p~~g~~V~v~y~~~~~dg~~~~~~----~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~g~~~~~i 137 (214)
..+|+.||.|+|||++++.+|++|++. .|++|.+|.+.+++||+.+|.+|++||+++|.||++++||..+.....|
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~i 81 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKI 81 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTB
T ss_pred CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCc
Confidence 467999999999999999999999876 5999999999999999999999999999999999999999999855479
Q ss_pred CCCCeEEEEEEec
Q psy1750 138 PPGAKLYYSLTLH 150 (214)
Q Consensus 138 p~~~~l~f~IeL~ 150 (214)
|++++|+|+|+|+
T Consensus 82 p~~~~l~f~Iell 94 (94)
T PF00254_consen 82 PPNSTLVFEIELL 94 (94)
T ss_dssp TTTSEEEEEEEEE
T ss_pred CCCCeEEEEEEEC
Confidence 9999999999996
No 9
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.84 E-value=3.1e-20 Score=155.36 Aligned_cols=104 Identities=24% Similarity=0.405 Sum_probs=94.6
Q ss_pred cCCcEEEEEEeCCCCCCCCCCCCEEEEEEEEEEcCCcEEEec----cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEe
Q psy1750 47 GSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGMDYVLPLMEMGEECQIEIT 122 (214)
Q Consensus 47 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~dg~~~~~~----~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~ 122 (214)
.+.|++|+|+++|+ +..|+.||.|+|||.+++.||++|++. .|+.|.++ .+++||+++|.+|++|+++.|.||
T Consensus 144 t~sGl~y~Vi~~G~-G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~IP 220 (269)
T PRK10902 144 TSTGLLYKVEKEGT-GEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIP 220 (269)
T ss_pred CCCccEEEEEeCCC-CCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEEC
Confidence 46789999999999 578999999999999999999999864 47888775 699999999999999999999999
Q ss_pred cCccccCCCCCCCCCCCCCeEEEEEEeccccCC
Q psy1750 123 ARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPD 155 (214)
Q Consensus 123 ~~~ayG~~g~~~~~ip~~~~l~f~IeL~~v~~~ 155 (214)
++++||..|.+ .||||++|+|+|+|++|...
T Consensus 221 ~~laYG~~g~~--gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 221 PELAYGKAGVP--GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred chhhCCCCCCC--CCCCCCcEEEEEEEEEeccC
Confidence 99999999876 49999999999999999864
No 10
>KOG0545|consensus
Probab=99.83 E-value=1.6e-21 Score=158.14 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=127.8
Q ss_pred CcEEEEEEeCCCC-CCCCCCCCEEEEEEEEEEcC--CcEEEec----cceEEEeCCCccchhHHHHhcCcCCCcEEEEEE
Q psy1750 49 GHIKKKITKHGEP-DTRPQRGDLCVISGFGKLED--DTLVETF----DNLEICVGDLELVHGMDYVLPLMEMGEECQIEI 121 (214)
Q Consensus 49 ~~v~k~il~~G~g-~~~p~~g~~V~v~y~~~~~d--g~~~~~~----~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i 121 (214)
.+|.|+||+.|+| -....+|..|++||.....+ ++++|.+ +|..+++|...-++.||.+|.+|+++|.+.|.|
T Consensus 10 ~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~~ 89 (329)
T KOG0545|consen 10 EGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFWC 89 (329)
T ss_pred hhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhhh
Confidence 5799999999995 24458899999999998754 4678753 599999999999999999999999999999988
Q ss_pred ecC----c------------------------------cccCCCCCCC--CCCCCCeEEEEEEeccccCC----CCCCCC
Q psy1750 122 TAR----F------------------------------GYGDKGEPSK--SIPPGAKLYYSLTLHSVLPD----FDLAEL 161 (214)
Q Consensus 122 ~~~----~------------------------------ayG~~g~~~~--~ip~~~~l~f~IeL~~v~~~----~~~~~l 161 (214)
... | +|...|+..+ ..-..++|+|.|+|++|+.+ .+.|+|
T Consensus 90 d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~Wql 169 (329)
T KOG0545|consen 90 DTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQL 169 (329)
T ss_pred hhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccC
Confidence 642 1 1112222211 12234799999999999987 679999
Q ss_pred ChhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhccC
Q psy1750 162 PVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 162 ~~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 202 (214)
+++||+..+..++.+||++|+.|+|..|+.+|..|+.+|++
T Consensus 170 sddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~ 210 (329)
T KOG0545|consen 170 SDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRN 210 (329)
T ss_pred CchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
No 11
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.57 E-value=2.5e-14 Score=111.02 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=62.8
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEec----cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCC
Q psy1750 64 RPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDK 130 (214)
Q Consensus 64 ~p~~g~~V~v~y~~~~~dg~~~~~~----~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~ 130 (214)
.++.|+.|++||++++.||++|+++ .|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||..
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~ 74 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP 74 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 5688999999999999999999964 599999999999999999999999999999999999999874
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=9.3e-13 Score=102.57 Aligned_cols=103 Identities=26% Similarity=0.404 Sum_probs=84.6
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEec----cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCCCC-------
Q psy1750 64 RPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGE------- 132 (214)
Q Consensus 64 ~p~~g~~V~v~y~~~~~dg~~~~~~----~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~g~------- 132 (214)
+...|+.|.++|++++.||++||++ .|+.|.+|.+++++|||+||.+|.+|++..+.|||+.|||...-
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~lvq~vp 81 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDLVQRVP 81 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHHeEEec
Confidence 3578999999999999999999975 49999999999999999999999999999999999999997421
Q ss_pred --------CC---C------C---CC-------------------CCCeEEEEEEeccccCCCCCCCCChhHHhHhhhhh
Q psy1750 133 --------PS---K------S---IP-------------------PGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGVKR 173 (214)
Q Consensus 133 --------~~---~------~---ip-------------------~~~~l~f~IeL~~v~~~~~~~~l~~~ekl~~a~~~ 173 (214)
+. . . +| ++.+|.|+|+++++.+ ..++++.+...+
T Consensus 82 ~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~-------a~~eei~~~~~~ 154 (174)
T COG1047 82 RDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVRE-------ATEEEIAHGHVH 154 (174)
T ss_pred HHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEec-------ChHHHHHHHHhh
Confidence 00 0 0 11 5789999999999998 456666555444
No 13
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.44 E-value=4.9e-13 Score=106.85 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=62.2
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEec---cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCC
Q psy1750 65 PQRGDLCVISGFGKLEDDTLVETF---DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDK 130 (214)
Q Consensus 65 p~~g~~V~v~y~~~~~dg~~~~~~---~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~ 130 (214)
.+.++.|+|+|++++.||++|+++ .|+.|.+|.++++++||++|.+|.+|++..|+|+|+.|||..
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~ 71 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY 71 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 567899999999999999999975 599999999999999999999999999999999999999874
No 14
>KOG0543|consensus
Probab=99.23 E-value=1.9e-11 Score=105.93 Aligned_cols=79 Identities=28% Similarity=0.473 Sum_probs=73.0
Q ss_pred eCCCCCCCCCCCCEEEEEEEEEEcCCcEEEec---cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCCCCC
Q psy1750 57 KHGEPDTRPQRGDLCVISGFGKLEDDTLVETF---DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 133 (214)
Q Consensus 57 ~~G~g~~~p~~g~~V~v~y~~~~~dg~~~~~~---~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~g~~ 133 (214)
++|.|...|..|+.|.+||++++.||+.||++ +|+.|.+|.+.++.||+.++.+|+. |..+.|
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p 66 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP 66 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC
Confidence 47888899999999999999999999999864 4999999999999999999999999 777888
Q ss_pred CCCCCCCCeEEEEEEec
Q psy1750 134 SKSIPPGAKLYYSLTLH 150 (214)
Q Consensus 134 ~~~ip~~~~l~f~IeL~ 150 (214)
+ .||++++|.|+|+|+
T Consensus 67 p-~ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 67 P-KIPSNATLLFEVELL 82 (397)
T ss_pred C-CCCCCcceeeeeccc
Confidence 8 899999999999985
No 15
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.05 E-value=1.6e-09 Score=96.35 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=75.9
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEec--cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCCCCCCCCCCCCC
Q psy1750 64 RPQRGDLCVISGFGKLEDDTLVETF--DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGA 141 (214)
Q Consensus 64 ~p~~g~~V~v~y~~~~~dg~~~~~~--~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~g~~~~~ip~~~ 141 (214)
.++.||.|+++|+++. +|+.+++. .++.|.+|.+.+++||+.+|.+|++|++..|.+++...|+..... +.
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~------gk 218 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA------GK 218 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC------CC
Confidence 5688999999999987 78888753 589999999999999999999999999999999988888876554 48
Q ss_pred eEEEEEEeccccCC
Q psy1750 142 KLYYSLTLHSVLPD 155 (214)
Q Consensus 142 ~l~f~IeL~~v~~~ 155 (214)
++.|+|+|.+|...
T Consensus 219 ~~~f~v~i~~I~~~ 232 (408)
T TIGR00115 219 EATFKVTVKEVKEK 232 (408)
T ss_pred eEEEEEEEEEeccC
Confidence 99999999999985
No 16
>PRK01490 tig trigger factor; Provisional
Probab=98.99 E-value=4.1e-09 Score=94.55 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=75.5
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEe--ccceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCCCCCCCCCCCCC
Q psy1750 64 RPQRGDLCVISGFGKLEDDTLVET--FDNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGA 141 (214)
Q Consensus 64 ~p~~g~~V~v~y~~~~~dg~~~~~--~~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~g~~~~~ip~~~ 141 (214)
.++.||.|+++|.++. ||+.|+. ..++.|.+|.+.+++||+.+|.+|++|++..|.+++...|+.....+ .
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~lag------k 229 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLAG------K 229 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCCC------C
Confidence 4689999999999998 7888875 35899999999999999999999999999999998888887755544 8
Q ss_pred eEEEEEEeccccCC
Q psy1750 142 KLYYSLTLHSVLPD 155 (214)
Q Consensus 142 ~l~f~IeL~~v~~~ 155 (214)
++.|.|+|.+|...
T Consensus 230 ~~~f~v~v~~V~~~ 243 (435)
T PRK01490 230 EATFKVTVKEVKEK 243 (435)
T ss_pred eEEEEEEEEEeccC
Confidence 99999999999985
No 17
>KOG0544|consensus
Probab=98.94 E-value=6e-10 Score=77.59 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=42.2
Q ss_pred ChhhhhccCCCceEEEEecCC-CC--CCCCCCCCCCCcccccceeEEe
Q psy1750 1 MDESISNGNNGDLNSFEIVDK-AD--VEENPVIPDKPEEEVEDEWVDI 45 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~-~~--~~~~~~~p~~~~~~~~~~~~d~ 45 (214)
||+||+.|++||+|.++|.|. +| .|.|..||+|++|.|+++++++
T Consensus 60 wdegv~qmsvGekakLti~pd~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 60 WDEGVAQMSVGEKAKLTISPDYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred hhhcchhccccccceeeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 899999999999999999999 55 7889999999999999999876
No 18
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.8e-09 Score=93.29 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=76.8
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEec--cceEEEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCCCCCCCCCCCCCe
Q psy1750 65 PQRGDLCVISGFGKLEDDTLVETF--DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAK 142 (214)
Q Consensus 65 p~~g~~V~v~y~~~~~dg~~~~~~--~~~~~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~g~~~~~ip~~~~ 142 (214)
.+.||.|+|+|.|+. ||..|... ..+.|.||.+.++|||+.+|.+|++|+...|.+.....|....+.+ .+
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~LaG------K~ 230 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELAG------KE 230 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhCC------Cc
Confidence 889999999999977 79998864 5899999999999999999999999999998777666666655554 78
Q ss_pred EEEEEEeccccCCCCCCCCCh
Q psy1750 143 LYYSLTLHSVLPDFDLAELPV 163 (214)
Q Consensus 143 l~f~IeL~~v~~~~~~~~l~~ 163 (214)
..|.|+|..|.. ++..+|++
T Consensus 231 a~F~V~vkeVk~-~elpEldD 250 (441)
T COG0544 231 ATFKVKVKEVKK-RELPELDD 250 (441)
T ss_pred eEEEEEEEEEee-cCCCCCCH
Confidence 999999999998 44444544
No 19
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=97.73 E-value=2.2e-05 Score=55.27 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=35.9
Q ss_pred ChhhhhccCCCceEEEEecCC-CCC--CC-CCCCCCCCcccccceeE
Q psy1750 1 MDESISNGNNGDLNSFEIVDK-ADV--EE-NPVIPDKPEEEVEDEWV 43 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~-~~~--~~-~~~~p~~~~~~~~~~~~ 43 (214)
|++||.+|++||++.|.|+|. +|. +. ++.||+++++.|+++++
T Consensus 48 ~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 48 LEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTLVFEIELL 94 (94)
T ss_dssp HHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEEEEEE
T ss_pred hhhhcccccCCCEeeeEeCChhhcCccccCCCCcCCCCeEEEEEEEC
Confidence 589999999999999999999 552 22 44599999999998864
No 20
>KOG0549|consensus
Probab=97.71 E-value=1.1e-05 Score=63.20 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=47.2
Q ss_pred EEeCCCccchhHHHHhcCcCCCcEEEEEEecCccccCCCCCCCCCCCCCeEEEEEEeccccCC
Q psy1750 93 ICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPD 155 (214)
Q Consensus 93 ~~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~ayG~~g~~~~~ip~~~~l~f~IeL~~v~~~ 155 (214)
|++|.+.+++|+++++.+|+.||+..+++||+++||..+... -..++|.+.|+.+-..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~~-----~~~~~~~~~l~~~~~~ 58 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRGD-----LNILVITILLVLLFRA 58 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccccc-----ccceEEEeeeeehhhh
Confidence 468899999999999999999999999999999999655443 2346777777666553
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.29 E-value=0.0002 Score=67.01 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=56.7
Q ss_pred CCCCCCeEEEEEEeccccCCCCCCCCChhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhcc
Q psy1750 136 SIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 136 ~ip~~~~l~f~IeL~~v~~~~~~~~l~~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 201 (214)
.+|++.++....++..+.. +..|.|+++++...+..+|..||.+|+.|+|..|+..|++|+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p 158 (615)
T TIGR00990 94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP 158 (615)
T ss_pred CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4677777888777776665 6679999999999999999999999999999999999999998754
No 22
>KOG0547|consensus
Probab=97.24 E-value=0.00022 Score=63.92 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=40.8
Q ss_pred CCChhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhccC
Q psy1750 160 ELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 160 ~l~~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 202 (214)
.|+.++++..|...|.+||.+|++|+|..||+.|..|+.+...
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ 147 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD 147 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC
Confidence 4788999999999999999999999999999999999998877
No 23
>KOG4648|consensus
Probab=97.13 E-value=0.00027 Score=61.07 Aligned_cols=39 Identities=23% Similarity=0.496 Sum_probs=34.9
Q ss_pred hhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhcc
Q psy1750 163 VEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 163 ~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 201 (214)
.++.+..+..+|++||.+||+|+|..|+.||.+++..--
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P 128 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYP 128 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCC
Confidence 367788899999999999999999999999999987644
No 24
>KOG4234|consensus
Probab=97.07 E-value=0.00048 Score=55.44 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=35.4
Q ss_pred HhHhhhhhhhccccccccCCHHHHHHHHHHHhhhccCCC
Q psy1750 166 RLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204 (214)
Q Consensus 166 kl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 204 (214)
.++.+.++|..||++|++|+|..|...|..||..+....
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~ 129 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS 129 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc
Confidence 378999999999999999999999999999999886653
No 25
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=97.04 E-value=0.00068 Score=57.16 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=39.8
Q ss_pred ChhhhhccCCCceEEEEecCC-CC-CCCCCCCCCCCcccccceeEEeec
Q psy1750 1 MDESISNGNNGDLNSFEIVDK-AD-VEENPVIPDKPEEEVEDEWVDILG 47 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~-~~-~~~~~~~p~~~~~~~~~~~~d~~~ 47 (214)
|++++..|++|++..|.|||. +| ...++.||+++++.|++++.++..
T Consensus 202 ~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 202 WTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred HHHHHhcCCCCcEEEEEECchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence 689999999999999999998 55 222346999999999999999863
No 26
>KOG0553|consensus
Probab=95.67 E-value=0.008 Score=50.96 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=38.3
Q ss_pred CChhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhccCCC
Q psy1750 161 LPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204 (214)
Q Consensus 161 l~~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 204 (214)
.+.+|-..+|+.+|.+||.+.+.++|+.|+.+|.+||.+.....
T Consensus 72 ~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA 115 (304)
T KOG0553|consen 72 LTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA 115 (304)
T ss_pred cChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence 34447888999999999999999999999999999999875443
No 27
>KOG0551|consensus
Probab=95.44 E-value=0.008 Score=51.79 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=31.0
Q ss_pred HhhhhhhhccccccccCCHHHHHHHHHHHhhhcc
Q psy1750 168 DFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 168 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 201 (214)
+.|..+|+.||++||.++|..|..+|.++|+.=.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc 112 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC 112 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 3899999999999999999999999999998543
No 28
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=94.92 E-value=0.2 Score=38.82 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=21.4
Q ss_pred ChhhhhccCCCceEEEEecCC-CC
Q psy1750 1 MDESISNGNNGDLNSFEIVDK-AD 23 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~-~~ 23 (214)
|++|+.+|++|+++.|.|+|+ +|
T Consensus 48 le~aL~gm~~Ge~~~v~ipp~~ay 71 (156)
T PRK15095 48 LEQQLLGLKVGDKKTFSLEPEAAF 71 (156)
T ss_pred HHHHHcCCCCCCEEEEEEChHHhc
Confidence 689999999999999999999 66
No 29
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.96 E-value=0.044 Score=30.46 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=24.4
Q ss_pred hhhhccccccccCCHHHHHHHHHHHhhhc
Q psy1750 172 KRKHRGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 172 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
..-.+|.-++..++|..|+..|++|+++-
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45568999999999999999999999863
No 30
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.90 E-value=0.046 Score=30.16 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=24.1
Q ss_pred hhhhccccccccCCHHHHHHHHHHHhhhc
Q psy1750 172 KRKHRGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 172 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
-....|.-+|+.|+|..|++.|++|+.+-
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34567888999999999999999999864
No 31
>KOG0546|consensus
Probab=93.69 E-value=0.055 Score=46.99 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=37.4
Q ss_pred hhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhccCC
Q psy1750 163 VEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 163 ~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
.+..+..+..+|..||..|++++|..|...|.+++.+++..
T Consensus 215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~ 255 (372)
T KOG0546|consen 215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQ 255 (372)
T ss_pred cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhccc
Confidence 45677888999999999999999999999999999999963
No 32
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=93.54 E-value=0.35 Score=38.95 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=21.2
Q ss_pred ChhhhhccCCCceEEEEecCC-CC
Q psy1750 1 MDESISNGNNGDLNSFEIVDK-AD 23 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~-~~ 23 (214)
++++|.+|..|++.+|+|+|+ +|
T Consensus 45 lE~aL~G~~~Gd~~~v~l~peeAy 68 (196)
T PRK10737 45 LETALEGHEVGDKFDVAVGANDAY 68 (196)
T ss_pred HHHHHcCCCCCCEEEEEEChHHhc
Confidence 478999999999999999999 66
No 33
>KOG0548|consensus
Probab=93.47 E-value=0.052 Score=49.34 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.0
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhhc
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
.+...|..||++|+.|+|..|++.|.+|++.=
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 57778999999999999999999999998764
No 34
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.40 E-value=0.054 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=21.4
Q ss_pred hhccccccccCCHHHHHHHHHHHhhh
Q psy1750 174 KHRGNWFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 174 k~~Gn~~fk~~~~~~A~~~Y~~al~~ 199 (214)
...|+-+++.|+|.+|+..|++||.+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999998844
No 35
>KOG0550|consensus
Probab=92.85 E-value=0.072 Score=47.28 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.1
Q ss_pred HhHhhhhhhhccccccccCCHHHHHHHHHHHhhh
Q psy1750 166 RLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 166 kl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 199 (214)
....++..|.+||..||+|+|..|-.+|..||.+
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 4567889999999999999999999999999975
No 36
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.45 E-value=0.093 Score=33.95 Aligned_cols=31 Identities=13% Similarity=0.395 Sum_probs=27.0
Q ss_pred hhhhhhccccccccCCHHHHHHHHHHHhhhc
Q psy1750 170 GVKRKHRGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 170 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
+......|..+|..++|..|+..|++|+.+-
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD 33 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4567788999999999999999999999873
No 37
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=2.7 Score=33.11 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.2
Q ss_pred ChhhhhccCCCceEEEEecCC-CC
Q psy1750 1 MDESISNGNNGDLNSFEIVDK-AD 23 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~-~~ 23 (214)
+++|+.+|.+|+..+++|+|+ +|
T Consensus 46 lE~al~g~~~Ge~~~V~IpPE~Af 69 (174)
T COG1047 46 LEEALLGKEVGEEFTVEIPPEDAF 69 (174)
T ss_pred HHHHHhCCCCCceeEEEeCchHhc
Confidence 478999999999999999999 66
No 38
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.82 E-value=0.56 Score=25.70 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=24.2
Q ss_pred hhhhccccccccCCHHHHHHHHHHHhhhc
Q psy1750 172 KRKHRGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 172 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
..-..|.-+.+.|++..|...|++|+++=
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34456778889999999999999999863
No 39
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.85 E-value=0.87 Score=25.87 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=25.1
Q ss_pred hhhhhccccccccCCHHHHHHHHHHHhhhccCCC
Q psy1750 171 VKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204 (214)
Q Consensus 171 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 204 (214)
......|+-++..|+|..|...|++|+.+.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 36 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLL 36 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence 3455678889999999999999999999877653
No 40
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=82.45 E-value=0.81 Score=30.22 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=28.3
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhhccCC
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
.+......|.-++..|+|..|+..|++|+.+.+..
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 38 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQL 38 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45556778899999999999999999999995443
No 41
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=81.96 E-value=1.3 Score=29.02 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=23.7
Q ss_pred hhhhccccccccCCHHHHHHHHHHHhhhccC
Q psy1750 172 KRKHRGNWFYSRGDNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 172 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 202 (214)
..-.+|..+=+.|+|..|+.+|.+|+.+|..
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3334455555689999999999999998864
No 42
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.19 E-value=1.6 Score=29.58 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=26.6
Q ss_pred hhhhhhccccccccCCHHHHHHHHHHHhhhccCC
Q psy1750 170 GVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 170 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
|...-.++.++=+.|+|..|+.+|..|+.+|-..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 3444455666678999999999999999998663
No 43
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.04 E-value=1.1 Score=22.74 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.5
Q ss_pred hhccccccccCCHHHHHHHHHHHhhh
Q psy1750 174 KHRGNWFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 174 k~~Gn~~fk~~~~~~A~~~Y~~al~~ 199 (214)
...|.-++..++|..|...|.++++.
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45677888999999999999999875
No 44
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.47 E-value=1.6 Score=29.57 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.4
Q ss_pred hhhccccccccCCHHHHHHHHHHHhhhccCC
Q psy1750 173 RKHRGNWFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 173 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
.-.++.++=+.|+|..|+.+|..|+.+|...
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3345577778999999999999999998764
No 45
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=77.98 E-value=1.8 Score=29.14 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=27.6
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhhccCCC
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 204 (214)
.|..+=.+|.+.=+.|+|..|..+|..||.+|-..-
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344444556777789999999999999999987643
No 46
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=76.11 E-value=2.6 Score=28.24 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=27.9
Q ss_pred HhhhhhhhccccccccCCHHHHHHHHHHHhhhccCC
Q psy1750 168 DFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 168 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
..|..+-.+|.+.=+.|+|..|+.+|.+|+.+|-..
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 344445556677778999999999999999988653
No 47
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.24 E-value=2.8 Score=28.38 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=26.5
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhhccC
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 202 (214)
.|...-.+.-++=+.|+|..|+.+|++|+..|-.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3444555666777899999999999999988754
No 48
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=74.25 E-value=1.4 Score=27.86 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=15.6
Q ss_pred ccccccccCCHHHHHHHHHHHhhh
Q psy1750 176 RGNWFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 176 ~Gn~~fk~~~~~~A~~~Y~~al~~ 199 (214)
.|..+++.|+|..|++.|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~ 26 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ 26 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355566677777777777766654
No 49
>KOG0550|consensus
Probab=74.16 E-value=2.9 Score=37.47 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=36.3
Q ss_pred hhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhccCC
Q psy1750 163 VEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 163 ~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
.++-...++..+++||.+++.++|..|+..|..|++..-..
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~ 82 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN 82 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc
Confidence 45667789999999999999999999999999999987544
No 50
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=73.20 E-value=2.5 Score=27.77 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=30.4
Q ss_pred hHhhhhhhhccccccccCCHHHHHHHHHHHhhhcc
Q psy1750 167 LDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 167 l~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 201 (214)
...+...-..|+-+...|++..|...|++|+++.+
T Consensus 43 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 43 PDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 44577788899999999999999999999998864
No 51
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=73.14 E-value=2.7 Score=28.33 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=24.5
Q ss_pred hhccccccccCCHHHHHHHHHHHhhhccCCC
Q psy1750 174 KHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204 (214)
Q Consensus 174 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 204 (214)
=.++.+.=+.++|..|..+|..|+.+|...-
T Consensus 10 ~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~ 40 (75)
T cd02677 10 IRLALEKEEEGDYEAAFEFYRAGVDLLLKGV 40 (75)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 3344556667999999999999999987754
No 52
>KOG2114|consensus
Probab=70.91 E-value=2.6 Score=40.81 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=31.8
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhhccCCC
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 204 (214)
.+...+..|+.+|++|+|..|..-|.+++.+|+.+.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~ 402 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE 402 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH
Confidence 445568999999999999999999999999998764
No 53
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=70.47 E-value=4.2 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=24.3
Q ss_pred hhhccccccccCCHHHHHHHHHHHhhhccCCC
Q psy1750 173 RKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204 (214)
Q Consensus 173 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 204 (214)
+-..|.+.=+.|+|..|+.+|..|+..|...-
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 33445555567999999999999999887643
No 54
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=68.95 E-value=3.6 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=21.7
Q ss_pred hccccccccCCHHHHHHHHHHHhhhc
Q psy1750 175 HRGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 175 ~~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
..|..+...|++..|++.|+++++.-
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566788999999999999999853
No 55
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.99 E-value=5.2 Score=26.63 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=23.2
Q ss_pred hccccccccCCHHHHHHHHHHHhhhccCCC
Q psy1750 175 HRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204 (214)
Q Consensus 175 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 204 (214)
.+|...=+.|+|..|+.+|.+|+..|...-
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 344444458999999999999999887643
No 56
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.92 E-value=4.8 Score=27.18 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=23.3
Q ss_pred hccccccccCCHHHHHHHHHHHhhhccC
Q psy1750 175 HRGNWFYSRGDNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 175 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 202 (214)
.+|++-=..|+|..|+++|..|+.++-.
T Consensus 11 ~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 11 TQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3445555789999999999999999987
No 57
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=62.54 E-value=4.6 Score=25.55 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.5
Q ss_pred ccccCCHHHHHHHHHHHhhhc
Q psy1750 180 FYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 180 ~fk~~~~~~A~~~Y~~al~~l 200 (214)
+++.|+|..|++.|++++..-
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~ 21 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN 21 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT
T ss_pred ChhccCHHHHHHHHHHHHHHC
Confidence 467899999999999998763
No 58
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=61.06 E-value=8.9 Score=25.86 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=33.8
Q ss_pred hhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhcc
Q psy1750 163 VEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 163 ~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 201 (214)
.++-++.|....+.|..++++|++..|..++.=|-..|+
T Consensus 28 a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLD 66 (75)
T PF04010_consen 28 AEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLD 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999988777665
No 59
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=58.83 E-value=7.6 Score=35.21 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=30.7
Q ss_pred hHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhc
Q psy1750 164 EKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 164 ~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
+..-..+..+-..|+.+|+.|+|+.|+..|++||.+=
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455667777788999999999999999999999873
No 60
>KOG2003|consensus
Probab=57.68 E-value=7 Score=35.66 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=30.0
Q ss_pred hhhhhccccccccCCHHHHHHHHHHHhhhccCCCCC
Q psy1750 171 VKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMD 206 (214)
Q Consensus 171 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~ 206 (214)
..+-..||-+|++.+|.+|++.|..||..+-+.+.+
T Consensus 238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~ 273 (840)
T KOG2003|consen 238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKD 273 (840)
T ss_pred eeeeeecceeeehhhHHHHHHHHHHHHhhccccchh
Confidence 334578999999999999999999999887766544
No 61
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=57.21 E-value=8.8 Score=24.06 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=25.1
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhh
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 199 (214)
........|.-++..|+|..|+..|++++..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445567888999999999999999999865
No 62
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=55.83 E-value=14 Score=32.89 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=18.1
Q ss_pred ChhhhhccCCCceEEEEecCC
Q psy1750 1 MDESISNGNNGDLNSFEIVDK 21 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~ 21 (214)
+++++.+|++|+..+|.++..
T Consensus 187 ~ee~L~G~k~Gd~~~~~v~~p 207 (408)
T TIGR00115 187 FEEQLVGMKAGEEKEIKVTFP 207 (408)
T ss_pred HHHHhCCCCCCCeeEEEecCc
Confidence 467899999999999999754
No 63
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=54.64 E-value=8.9 Score=22.23 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=21.7
Q ss_pred cccccccCCHHHHHHHHHHHhhhccCC
Q psy1750 177 GNWFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 177 Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
|.--..+++|..|+.-|++||++....
T Consensus 8 geisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 8 GEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 444566889999999999999987653
No 64
>COG1278 CspC Cold shock proteins [Transcription]
Probab=54.15 E-value=22 Score=23.44 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=28.8
Q ss_pred CCCCCCCCCCC-CEEEEEEEEEEcCC-cEEEeccceEEEeCCC
Q psy1750 58 HGEPDTRPQRG-DLCVISGFGKLEDD-TLVETFDNLEICVGDL 98 (214)
Q Consensus 58 ~G~g~~~p~~g-~~V~v~y~~~~~dg-~~~~~~~~~~~~lG~~ 98 (214)
+|-|...|..| .-|.|||+..-.+| +.+...+.+.|.+..+
T Consensus 13 KGfGFI~p~~G~~DvFVH~Sai~~~g~~~L~eGQ~V~f~~~~g 55 (67)
T COG1278 13 KGFGFITPEDGGKDVFVHISAIQRAGFRTLREGQKVEFEVEQG 55 (67)
T ss_pred CcceEcCCCCCCcCEEEEeeeeccCCCcccCCCCEEEEEEecC
Confidence 45566888888 58999999876555 5555666666666654
No 65
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.56 E-value=7.1 Score=29.15 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.3
Q ss_pred hhhccccccccCCHHHHHHHHHHHh
Q psy1750 173 RKHRGNWFYSRGDNSFAVQCYRRSL 197 (214)
Q Consensus 173 ~k~~Gn~~fk~~~~~~A~~~Y~~al 197 (214)
.--+|.-+++.|++..|+..|++||
T Consensus 121 ~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 121 AELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3458999999999999999999986
No 66
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=53.25 E-value=19 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=18.2
Q ss_pred hhHHHHhcCcCCCcEEEEEEecC
Q psy1750 102 HGMDYVLPLMEMGEECQIEITAR 124 (214)
Q Consensus 102 ~gle~~l~~M~~GE~~~~~i~~~ 124 (214)
+.+..|+..|+.||++.+...++
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 47889999999999999998764
No 67
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=53.12 E-value=13 Score=25.15 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=30.3
Q ss_pred hhhhccCCCceEEEEecCCCCCCCCCCCCCCCcccccceeEEeecCCcEEEEEEeCC
Q psy1750 3 ESISNGNNGDLNSFEIVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHG 59 (214)
Q Consensus 3 ~~v~~m~~Ge~a~~~i~~~~~~~~~~~~p~~~~~~~~~~~~d~~~d~~v~k~il~~G 59 (214)
++++.|..||...+..-.. ++...||.-+...-.-+++++...++.++-+++.+
T Consensus 24 k~l~~m~~Ge~LeV~~ddp---~~~~dIp~~~~~~~~~~ll~~e~~~~~~~~~Ikk~ 77 (78)
T COG0425 24 KALAKLKPGEILEVIADDP---AAKEDIPAWAKKEGGHELLEVEQEGGVYRILIKKG 77 (78)
T ss_pred HHHHcCCCCCEEEEEecCc---chHHHHHHHHHHcCCcEEEEEEecCCcEEEEEEec
Confidence 6889999999999887432 22333443333111134555555555555555543
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=53.05 E-value=8.7 Score=24.33 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=24.7
Q ss_pred hhhhhhccccccccC-CHHHHHHHHHHHhhh
Q psy1750 170 GVKRKHRGNWFYSRG-DNSFAVQCYRRSLDF 199 (214)
Q Consensus 170 a~~~k~~Gn~~fk~~-~~~~A~~~Y~~al~~ 199 (214)
+...-.+|.-+++.+ +|..|++.|++|+++
T Consensus 37 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 37 AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 345567788888998 799999999999875
No 69
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=49.61 E-value=8.8 Score=20.25 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=19.9
Q ss_pred ccccccccCCHHHHHHHHHHHhhhc
Q psy1750 176 RGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 176 ~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
.|.-+++.|++..|+..|++.++-.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4555677899999999999988653
No 70
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.56 E-value=14 Score=21.03 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=15.5
Q ss_pred hccccccccCCHHHHHHHHH
Q psy1750 175 HRGNWFYSRGDNSFAVQCYR 194 (214)
Q Consensus 175 ~~Gn~~fk~~~~~~A~~~Y~ 194 (214)
.-|-.++.+|+|..|++.|+
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 34667899999999999955
No 71
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=47.98 E-value=20 Score=30.04 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=40.1
Q ss_pred CCChhHHhHhhhhhhhccccccccC-CHHHHHHHHHHHhhhccC
Q psy1750 160 ELPVEKRLDFGVKRKHRGNWFYSRG-DNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 160 ~l~~~ekl~~a~~~k~~Gn~~fk~~-~~~~A~~~Y~~al~~l~~ 202 (214)
.++++....++...-.-|..+++++ +|..|.+--++|.++|+.
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 5677888899999999999999999 999999999999999987
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=46.99 E-value=14 Score=29.36 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=27.2
Q ss_pred hhhhhccccccccCCHHHHHHHHHHHhhhccC
Q psy1750 171 VKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 171 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 202 (214)
..+-..|..+|+.|+|..|+..|+++++....
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44566788899999999999999999887765
No 73
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=46.93 E-value=14 Score=31.08 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=28.5
Q ss_pred Hhhhhhhhcccccccc-CCHHHHHHHHHHHhhhccCCC
Q psy1750 168 DFGVKRKHRGNWFYSR-GDNSFAVQCYRRSLDFLDSSN 204 (214)
Q Consensus 168 ~~a~~~k~~Gn~~fk~-~~~~~A~~~Y~~al~~l~~~~ 204 (214)
..+..+...|.-+.+. ++++.|+..|++|+.+++...
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 3566667777777788 899999999999999987654
No 74
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=46.36 E-value=14 Score=23.64 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=26.6
Q ss_pred hhhhhhccccccccCCHHHHHHHHHHHhhhcc
Q psy1750 170 GVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 170 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 201 (214)
......+|.-+++.|+|..|...+++++..-.
T Consensus 29 ~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 29 PELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred chhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34456789999999999999999999996544
No 75
>KOG0553|consensus
Probab=45.73 E-value=12 Score=32.11 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=25.4
Q ss_pred hhhhhhccccccccCCHHHHHHHHHHHhhh
Q psy1750 170 GVKRKHRGNWFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 170 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 199 (214)
.+..-..|..++..|+|+.|++.|+|||.+
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 344456788899999999999999999976
No 76
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=44.51 E-value=16 Score=28.71 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=27.7
Q ss_pred hhhhhhccccccccCCHHHHHHHHHHHhhhccC
Q psy1750 170 GVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 170 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 202 (214)
-......|+.+.+.|++..|.+.|.++..+.-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~ 68 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS 68 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence 344568899999999999999999999887543
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=42.90 E-value=20 Score=27.48 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=20.4
Q ss_pred HhhhhhhhccccccccCCHHHHHHHHHHHhhh
Q psy1750 168 DFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 168 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 199 (214)
..+......|..++..|+|..|+..|++|++.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 64 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKL 64 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444556666666777777777777777654
No 78
>KOG0548|consensus
Probab=42.61 E-value=19 Score=33.19 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=31.5
Q ss_pred HhHhhhhhhhccccccccCCHHHHHHHHHHHhhhc
Q psy1750 166 RLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 166 kl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
....+...|..||..+++.+|..|+..|.+++.+=
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 45678889999999999999999999999999865
No 79
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.91 E-value=32 Score=17.63 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHhhhcc
Q psy1750 184 GDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 184 ~~~~~A~~~Y~~al~~l~ 201 (214)
+++..|...|++|+..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 1 GDIERARKIYERALEKFP 18 (33)
T ss_pred CcHHHHHHHHHHHHHHCC
Confidence 467889999999998765
No 80
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=40.03 E-value=32 Score=28.86 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCChhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhh
Q psy1750 160 ELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLD 198 (214)
Q Consensus 160 ~l~~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~ 198 (214)
+++.+..-.....+=..|+..|+.++|..|+.-|+-|++
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 455555555555666789999999999999999998874
No 81
>KOG2003|consensus
Probab=40.00 E-value=25 Score=32.26 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=23.9
Q ss_pred hhhccccccccCCHHHHHHHHHHHhh
Q psy1750 173 RKHRGNWFYSRGDNSFAVQCYRRSLD 198 (214)
Q Consensus 173 ~k~~Gn~~fk~~~~~~A~~~Y~~al~ 198 (214)
.-.+||-.|-+|+|.+|...|+.||+
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHc
Confidence 45789999999999999999999985
No 82
>PRK01490 tig trigger factor; Provisional
Probab=39.13 E-value=36 Score=30.54 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=17.6
Q ss_pred ChhhhhccCCCceEEEEecCC
Q psy1750 1 MDESISNGNNGDLNSFEIVDK 21 (214)
Q Consensus 1 ~~~~v~~m~~Ge~a~~~i~~~ 21 (214)
+++++.+|++|+...|.+...
T Consensus 198 fee~L~G~k~Ge~~~~~~~~p 218 (435)
T PRK01490 198 FEEQLVGMKAGEEKTIDVTFP 218 (435)
T ss_pred HHHHhCCCCCCCeeEEEecCc
Confidence 367899999999999988644
No 83
>PF13041 PPR_2: PPR repeat family
Probab=36.66 E-value=30 Score=20.52 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=17.7
Q ss_pred cccccCCHHHHHHHHHHHhhh
Q psy1750 179 WFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 179 ~~fk~~~~~~A~~~Y~~al~~ 199 (214)
.+.++|+++.|.+.|++..+.
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHc
Confidence 367899999999999988753
No 84
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=36.43 E-value=21 Score=23.74 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=14.3
Q ss_pred ccccccccCCHHHHHHHHHHH
Q psy1750 176 RGNWFYSRGDNSFAVQCYRRS 196 (214)
Q Consensus 176 ~Gn~~fk~~~~~~A~~~Y~~a 196 (214)
.|.-+|+.|+|..|+..|++|
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 366677777777777777765
No 85
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=36.35 E-value=38 Score=23.28 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.3
Q ss_pred eCCCccchhHHHHhcCcCCCcEEEEE
Q psy1750 95 VGDLELVHGMDYVLPLMEMGEECQIE 120 (214)
Q Consensus 95 lG~~~~~~gle~~l~~M~~GE~~~~~ 120 (214)
+..+.+.+.++.++..|++||.+..+
T Consensus 57 ~~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 57 ISRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp EETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred ccCCcccHHHHHHHHhCCCCCcCCCE
Confidence 44568899999999999999998655
No 86
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=36.06 E-value=25 Score=21.91 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=15.8
Q ss_pred ccccccccCCHHHHHHHHHHHhhhc
Q psy1750 176 RGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 176 ~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
.|.-++..+++..|...|++++...
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555556666777777776666643
No 87
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=35.89 E-value=19 Score=15.43 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=6.2
Q ss_pred HHHHHHHHhhh
Q psy1750 189 AVQCYRRSLDF 199 (214)
Q Consensus 189 A~~~Y~~al~~ 199 (214)
|+++|++|-.+
T Consensus 1 A~~~y~~Aa~~ 11 (12)
T PF02071_consen 1 AIKCYEKAAEC 11 (12)
T ss_pred CcHHHHHHHhh
Confidence 45566666543
No 88
>PRK00809 hypothetical protein; Provisional
Probab=34.05 E-value=1.3e+02 Score=22.78 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=21.1
Q ss_pred ccchhHHHHhcCcCCCcEEEEEEecC
Q psy1750 99 ELVHGMDYVLPLMEMGEECQIEITAR 124 (214)
Q Consensus 99 ~~~~gle~~l~~M~~GE~~~~~i~~~ 124 (214)
.++.+=..-|..|++|+.+.+..+..
T Consensus 23 g~~~~~rn~lr~Mk~GD~v~fYhs~~ 48 (144)
T PRK00809 23 GVPERYKNTIEKVKPGDKLIIYVSQE 48 (144)
T ss_pred ecchhhhhHHhhCCCCCEEEEEECCc
Confidence 34666777888999999999998865
No 89
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=33.88 E-value=38 Score=23.15 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=29.6
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhhccCC
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
.+..+=++|-.+|.+.+.+.|++++.+||+-+...
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~ 39 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR 39 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh
Confidence 45566788999999999999999999999877653
No 90
>PHA02122 hypothetical protein
Probab=33.39 E-value=82 Score=19.96 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=27.3
Q ss_pred ccceeEEeecCCcEEEEEEeCCCCCCCCCCCCEEEEEEEEEEcCCcEEE
Q psy1750 38 VEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVE 86 (214)
Q Consensus 38 ~~~~~~d~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~dg~~~~ 86 (214)
|+..++.+.+|+ .---|++.=. ..||.|.++|.... ||+.|-
T Consensus 17 fe~afi~l~g~~-~~~iiihs~~-----~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 17 FEEAFIGLLGDG-CENIIIHSFK-----DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred HHHHHHHhhCCC-CCcEEEEeec-----cCCCEEEEEEEEEE-CCEEEE
Confidence 555566666664 3334444322 47899999999987 787653
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=32.61 E-value=26 Score=26.18 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=17.0
Q ss_pred hhhccccccccCCHHHHHHHHHHHhhh
Q psy1750 173 RKHRGNWFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 173 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 199 (214)
....|.-+.+.|+|..|+..|.+|+..
T Consensus 61 ~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 61 HIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345566666666666666666666653
No 92
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=32.51 E-value=97 Score=25.13 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=36.5
Q ss_pred CCCCCCCCEEEEEEEEEEcCCcEEEeccceEEEeCC---------CccchhHHHHhcCcCCCcEE
Q psy1750 62 DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGD---------LELVHGMDYVLPLMEMGEEC 117 (214)
Q Consensus 62 ~~~p~~g~~V~v~y~~~~~dg~~~~~~~~~~~~lG~---------~~~~~gle~~l~~M~~GE~~ 117 (214)
...+++||.|.+++.+.+ +|-..| ...+|.+|. ..+..+.+.++..|++|-++
T Consensus 74 ~r~l~~GD~v~~d~g~~~-~GY~ad--~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~ 135 (228)
T cd01090 74 NRKVQRGDILSLNCFPMI-AGYYTA--LERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARC 135 (228)
T ss_pred CcccCCCCEEEEEEeEEE-CCEeee--eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 466799999999988766 563333 235666775 23456777888888888654
No 93
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=30.67 E-value=33 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=9.6
Q ss_pred cccccccCCHHHHHHHHHHHh
Q psy1750 177 GNWFYSRGDNSFAVQCYRRSL 197 (214)
Q Consensus 177 Gn~~fk~~~~~~A~~~Y~~al 197 (214)
|..+++.++|..|+..|.+++
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444
No 94
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=29.68 E-value=25 Score=23.12 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=15.2
Q ss_pred hhccccccccCCHHHHHHHHHH
Q psy1750 174 KHRGNWFYSRGDNSFAVQCYRR 195 (214)
Q Consensus 174 k~~Gn~~fk~~~~~~A~~~Y~~ 195 (214)
..+=|++|.+|+|+.|.+.=..
T Consensus 10 ~~~F~~l~~~g~y~eAA~~AA~ 31 (66)
T PF13838_consen 10 VQQFNELFSQGQYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHh
Confidence 3444789999999988876443
No 95
>KOG1310|consensus
Probab=29.34 E-value=39 Score=31.63 Aligned_cols=38 Identities=21% Similarity=0.073 Sum_probs=33.4
Q ss_pred hHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhcc
Q psy1750 164 EKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 164 ~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 201 (214)
-|..+.+++.|..||+.|-.+....|+..|.+|+.+.-
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~ 405 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVP 405 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhcc
Confidence 45678889999999999999999999999999987643
No 96
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.27 E-value=52 Score=22.39 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCCC
Q psy1750 183 RGDNSFAVQCYRRSLDFLDSSNMDTN 208 (214)
Q Consensus 183 ~~~~~~A~~~Y~~al~~l~~~~~~~~ 208 (214)
.|.-..|+..|++|+..|......+.
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 37889999999999999988766665
No 97
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=28.54 E-value=1.8e+02 Score=19.16 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEeccceEEEeCCCccchh-HHHHhcCcCCCcEEEEEEe
Q psy1750 64 RPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLELVHG-MDYVLPLMEMGEECQIEIT 122 (214)
Q Consensus 64 ~p~~g~~V~v~y~~~~~dg~~~~~~~~~~~~lG~~~~~~g-le~~l~~M~~GE~~~~~i~ 122 (214)
.|+.||.|.-.......++-.++-...+.-.+-..++... ....-..+++|+...+.+-
T Consensus 3 ~p~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~ 62 (82)
T cd04454 3 LPDVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVI 62 (82)
T ss_pred CCCCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEE
Confidence 4789999987777766555555544334444443443322 3333345789998888774
No 98
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=27.68 E-value=42 Score=29.32 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=26.1
Q ss_pred hhhhhccccccccCCHHHHHHHHHHHhhhcc
Q psy1750 171 VKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 171 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 201 (214)
..+...|.-++..|+|..|+..|++|+.+-.
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 3456779999999999999999999998643
No 99
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=25.33 E-value=69 Score=16.45 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=15.9
Q ss_pred ccccCCHHHHHHHHHHHhh
Q psy1750 180 FYSRGDNSFAVQCYRRSLD 198 (214)
Q Consensus 180 ~fk~~~~~~A~~~Y~~al~ 198 (214)
+.+.+++.+|.+.|.+...
T Consensus 10 ~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 10 LCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5678999999999998764
No 100
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=24.73 E-value=59 Score=16.45 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=15.6
Q ss_pred cccccCCHHHHHHHHHHHhh
Q psy1750 179 WFYSRGDNSFAVQCYRRSLD 198 (214)
Q Consensus 179 ~~fk~~~~~~A~~~Y~~al~ 198 (214)
-+.+.+++.+|.+.|++..+
T Consensus 9 ~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 9 GYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHccchHHHHHHHHHHHhH
Confidence 35678899999999987654
No 101
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.73 E-value=78 Score=17.67 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHhhh
Q psy1750 184 GDNSFAVQCYRRSLDF 199 (214)
Q Consensus 184 ~~~~~A~~~Y~~al~~ 199 (214)
+.+.+|...|++.+..
T Consensus 1 kE~dRAR~IyeR~v~~ 16 (32)
T PF02184_consen 1 KEFDRARSIYERFVLV 16 (32)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 3578999999998865
No 102
>PF15469 Sec5: Exocyst complex component Sec5
Probab=24.27 E-value=43 Score=26.11 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.7
Q ss_pred cccccCCHHHHHHHHHHHhhhccCC
Q psy1750 179 WFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 179 ~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
++.++++|..|++-|.+|..+++..
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 3458999999999999999998765
No 103
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=24.13 E-value=59 Score=24.79 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=25.7
Q ss_pred hhhhhccccccccCCHHHHHHHHHHHhhhc
Q psy1750 171 VKRKHRGNWFYSRGDNSFAVQCYRRSLDFL 200 (214)
Q Consensus 171 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l 200 (214)
......|.-+++.|+|..|+..|.+|+.+.
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345677888899999999999999999864
No 104
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=24.03 E-value=77 Score=23.96 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=24.0
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhhcc
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 201 (214)
.+...-..|..++..++|..|...|.+|+....
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 66 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI 66 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Confidence 455556667777788888888888888877643
No 105
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=24.01 E-value=66 Score=25.94 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.5
Q ss_pred CCccchhHHHHhcCcCCCcEEEEEEecCccc
Q psy1750 97 DLELVHGMDYVLPLMEMGEECQIEITARFGY 127 (214)
Q Consensus 97 ~~~~~~gle~~l~~M~~GE~~~~~i~~~~ay 127 (214)
.+.+.+.|..++..|++|+.. . +...+||
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is-~-v~s~~G~ 217 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL-V-VQGPNNV 217 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE-E-eecCCce
Confidence 467899999999999999986 4 6666555
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=23.74 E-value=58 Score=24.26 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=26.4
Q ss_pred hhhhhccccccccCCHHHHHHHHHHHhhhccCC
Q psy1750 171 VKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSS 203 (214)
Q Consensus 171 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 203 (214)
..+-..|.-++..|++..|+..|.+|+..-...
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 334567788899999999999999999865443
No 107
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.42 E-value=1.6e+02 Score=21.65 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=28.3
Q ss_pred CCCCCEEEEEEEEEEcC-CcEEEeccceEEEeCCCccchhHHHHh
Q psy1750 65 PQRGDLCVISGFGKLED-DTLVETFDNLEICVGDLELVHGMDYVL 108 (214)
Q Consensus 65 p~~g~~V~v~y~~~~~d-g~~~~~~~~~~~~lG~~~~~~gle~~l 108 (214)
..+||.|++||--++.. |. .....--.|++.+|.+.+-|+-+.
T Consensus 71 iadGdLV~vh~hqt~~~pg~-~~~v~~DtfR~ddgkivEHWDviq 114 (129)
T COG4922 71 IADGDLVTVHYHQTVSEPGS-YTTVTFDTFRIDDGKIVEHWDVIQ 114 (129)
T ss_pred eccCCEEEEEEeeeeCCCCc-ceeEEEEEEEeeCCceeeccchhh
Confidence 46899999999988743 21 111113456777777778787766
No 108
>PRK09890 cold shock protein CspG; Provisional
Probab=22.93 E-value=1e+02 Score=20.15 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=22.8
Q ss_pred CCCCCCCCCCC-CEEEEEEEEEEcCC-cEEEeccceEEEeCC
Q psy1750 58 HGEPDTRPQRG-DLCVISGFGKLEDD-TLVETFDNLEICVGD 97 (214)
Q Consensus 58 ~G~g~~~p~~g-~~V~v~y~~~~~dg-~~~~~~~~~~~~lG~ 97 (214)
+|-|...|..| ..|.+|++....+| ..+..++.++|.+..
T Consensus 16 kGfGFI~~~~g~~dvFvH~s~l~~~~~~~l~~G~~V~f~~~~ 57 (70)
T PRK09890 16 KGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQ 57 (70)
T ss_pred CCcEEEecCCCCceEEEEEeeeccCCCCCCCCCCEEEEEEEE
Confidence 55555666655 57888887765444 333444455555544
No 109
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=22.72 E-value=2.3e+02 Score=24.10 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=35.4
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEEeccceEEEeCCC------ccchhHHHHhcCcCCCcEE
Q psy1750 63 TRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDL------ELVHGMDYVLPLMEMGEEC 117 (214)
Q Consensus 63 ~~p~~g~~V~v~y~~~~~dg~~~~~~~~~~~~lG~~------~~~~gle~~l~~M~~GE~~ 117 (214)
...++||.|.|++-+.. ||-..|.. .+|.+|.. .+..+++.|+..|++|-++
T Consensus 73 ~~l~~GDvV~iD~G~~~-dGY~aD~a--rT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~~ 130 (295)
T TIGR00501 73 TVFKDGDVVKLDLGAHV-DGYIADTA--ITVDLGDQYDNLVKAAKDALYTAIKEIRAGVRV 130 (295)
T ss_pred ccCCCCCEEEEEEeEEE-CCEEEEEE--EEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 45789999999987766 67544433 45666752 2345677788888888543
No 110
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=22.05 E-value=1.8e+02 Score=24.54 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=36.0
Q ss_pred CCCCCCCCEEEEEEEEEEcCCcEEEeccceEEEeCCC------ccchhHHHHhcCcCCCcEE
Q psy1750 62 DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDL------ELVHGMDYVLPLMEMGEEC 117 (214)
Q Consensus 62 ~~~p~~g~~V~v~y~~~~~dg~~~~~~~~~~~~lG~~------~~~~gle~~l~~M~~GE~~ 117 (214)
....++||.|.++.-+.. ||-..|. ..+|.+|.. ....+++.++..|++|-++
T Consensus 68 ~~~l~~GDvV~iD~G~~~-dGY~sD~--arT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~ 126 (291)
T cd01088 68 DTVLKEGDVVKLDFGAHV-DGYIADS--AFTVDFDPKYDDLLEAAKEALNAAIKEAGPDVRL 126 (291)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEE--EEEEecChhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 356789999999987665 6744443 245666652 2346788888999998554
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=21.97 E-value=72 Score=22.73 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=14.8
Q ss_pred hhhccccccccCCHHHHHHHHHHHhh
Q psy1750 173 RKHRGNWFYSRGDNSFAVQCYRRSLD 198 (214)
Q Consensus 173 ~k~~Gn~~fk~~~~~~A~~~Y~~al~ 198 (214)
....|..+++.++|..|.+.|++++.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 45 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAA 45 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34455555566666666666655554
No 112
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=21.80 E-value=1.7e+02 Score=26.88 Aligned_cols=52 Identities=6% Similarity=0.066 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEEeccceEEEeCCC------ccchhHHHHhcCcCCCcEE
Q psy1750 63 TRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDL------ELVHGMDYVLPLMEMGEEC 117 (214)
Q Consensus 63 ~~p~~g~~V~v~y~~~~~dg~~~~~~~~~~~~lG~~------~~~~gle~~l~~M~~GE~~ 117 (214)
...+.||.|.|++-+.. ||-..|.. ++|.+|.. .+..+++.|+..+++|-++
T Consensus 232 ~vLk~GDvVkID~G~~v-dGYiaD~A--rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~~ 289 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTHV-NGRIIDCA--FTVAFNPKYDPLLQATKDATNTGIKEAGIDVRL 289 (470)
T ss_pred cEecCCCeEEEEEeEEE-CCEEEeEE--EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 45788999999998777 68766654 34445641 2345677788888887543
No 113
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=21.59 E-value=3.1e+02 Score=24.46 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=35.6
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEEeccceEEEeCCC--------------ccchhHHHHhcCcCCCcEE
Q psy1750 63 TRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDL--------------ELVHGMDYVLPLMEMGEEC 117 (214)
Q Consensus 63 ~~p~~g~~V~v~y~~~~~dg~~~~~~~~~~~~lG~~--------------~~~~gle~~l~~M~~GE~~ 117 (214)
...++||.|.|++-+.. ||-.-+.. .+|.+|.. ....+++.++..|++|-++
T Consensus 99 ~~Lk~GDvVkIDlG~~i-dGY~aD~a--rTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~ 164 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI-DGFIALVA--HTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTN 164 (389)
T ss_pred cCcCCCCEEEEEEEEEE-CCEEEEEE--EEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 56789999999998877 67544433 56667731 1234677888999998543
No 114
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=21.28 E-value=1.2e+02 Score=21.68 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=37.1
Q ss_pred CCCCChhHHhHhhhhhhhccccccccCCHHHHHHHHHHHhhhccC
Q psy1750 158 LAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 158 ~~~l~~~ekl~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 202 (214)
.+..+...-+..|...-..+..+++.|+.+.|--.|-|.+.+++.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345666777889999999999999999999999999999988843
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=21.10 E-value=78 Score=25.17 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=11.6
Q ss_pred hhccccccccCCHHHHHHHHHHHhh
Q psy1750 174 KHRGNWFYSRGDNSFAVQCYRRSLD 198 (214)
Q Consensus 174 k~~Gn~~fk~~~~~~A~~~Y~~al~ 198 (214)
-..|..+++.++|..|+..|++++.
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~ 61 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALES 61 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 116
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=21.08 E-value=1.2e+02 Score=19.53 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=18.0
Q ss_pred HHHHhcCcCCCcEEEEEEecC
Q psy1750 104 MDYVLPLMEMGEECQIEITAR 124 (214)
Q Consensus 104 le~~l~~M~~GE~~~~~i~~~ 124 (214)
...+|..|+.|+...+.+.-.
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~ 36 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDP 36 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCc
Confidence 778999999999999888643
No 117
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=20.88 E-value=1.1e+02 Score=16.16 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=14.3
Q ss_pred ccCCHHHHHHHHHHHhh
Q psy1750 182 SRGDNSFAVQCYRRSLD 198 (214)
Q Consensus 182 k~~~~~~A~~~Y~~al~ 198 (214)
-..++..|++.|++|..
T Consensus 17 ~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 17 VKKDLEKALEYYKKAAE 33 (36)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 35789999999999875
No 118
>KOG4626|consensus
Probab=20.47 E-value=63 Score=30.99 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=20.7
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhh
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDF 199 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 199 (214)
.|..+-..|--+|.+|....|+..|+||+..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 3444445555677788888888888887753
No 119
>PRK08671 methionine aminopeptidase; Provisional
Probab=20.31 E-value=2.6e+02 Score=23.62 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=34.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEEeccceEEEeCCC------ccchhHHHHhcCcCCCcE
Q psy1750 63 TRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDL------ELVHGMDYVLPLMEMGEE 116 (214)
Q Consensus 63 ~~p~~g~~V~v~y~~~~~dg~~~~~~~~~~~~lG~~------~~~~gle~~l~~M~~GE~ 116 (214)
...++||.|.+++-+.. ||-..|.. .++.+|.. .+..+++.++..+++|-+
T Consensus 70 ~~l~~GDvV~iD~G~~~-dGY~aD~a--rT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~ 126 (291)
T PRK08671 70 RVFPEGDVVKLDLGAHV-DGYIADTA--VTVDLGGKYEDLVEASEEALEAAIEVVRPGVS 126 (291)
T ss_pred cccCCCCEEEEEEeEEE-CCEEEEEE--EEEEeChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45789999999987665 67544433 45667742 234677788888888844
No 120
>KOG1840|consensus
Probab=20.20 E-value=63 Score=29.97 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=31.5
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhhccCCCCCC
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDT 207 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~ 207 (214)
++...+.-|+-+-..++|..|+..|++|+.+++....-.
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 444556788888899999999999999999998655433
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=20.18 E-value=1.1e+02 Score=24.19 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=27.4
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHHHhhhccC
Q psy1750 169 FGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDS 202 (214)
Q Consensus 169 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 202 (214)
++.+.-..|..+|++++|..|+.+|+.+++-...
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 5566667899999999999999999998876543
Done!