RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1750
(214 letters)
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 133 bits (337), Expect = 4e-38
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 1/176 (0%)
Query: 34 PEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEI 93
+ + G I ++I GE +P G + ++ G +D + EI
Sbjct: 10 HSSGLVPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEI 69
Query: 94 CVG-DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
G +L+L +G++ + ME GE + + + +G G+ IPP A+L Y L L S
Sbjct: 70 GEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 129
Query: 153 LPDFDLAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTN 208
+ E+ E++L+ K RG ++ G A+ Y++ + +L+ + +N
Sbjct: 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN 185
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 105 bits (264), Expect = 2e-29
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Query: 36 EEVEDEWVDILGSGHIKKKITKHG-EPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEIC 94
+EW+DILG+G ++KK G +RP +G + + LE+ T V+ L
Sbjct: 4 GSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFT 63
Query: 95 VGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP 154
+GD +++ +D +PLM++GE + +++ YG +G S IPP A L +TL + +
Sbjct: 64 LGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVD 123
Query: 155 DFDLAELPVE 164
DL
Sbjct: 124 RPDLEMSGPS 133
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 102 bits (257), Expect = 4e-28
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 21 KADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHG-EPDTRPQRGDLCVISGFGKL 79
A + P+ +EW+DILG+G ++KK G +RP +G + + L
Sbjct: 15 LAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL 74
Query: 80 EDDTLVETFDNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPP 139
E+ T V+ L +GD +++ +D +PLM++GE + +++ YG +G S IPP
Sbjct: 75 ENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPP 134
Query: 140 GAKLYYSLTLHSV 152
A L +TL +
Sbjct: 135 HAALCLEVTLKTA 147
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 105 bits (264), Expect = 2e-27
Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 19/220 (8%)
Query: 1 MDESISNGNNGDLNSFEIV--DKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKH 58
MDES+ + EIV A V P +V+ E + + K+I K
Sbjct: 1 MDESLEHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAE--VLDEKVSKQIIKE 58
Query: 59 GEPDTRPQRGDLCVISGFGKLEDDTLVETFD-------NLEICVGDLELV-HGMDYVLPL 110
G ++P + C + ++ F+ +E+ +G + G+ +
Sbjct: 59 GH-GSKPSKYSTCFLHYRAWTKNSQHK--FEDTWHEQQPIELVLGKEKKELAGLAIGVAS 115
Query: 111 MEMGEECQIEITARFGYGDKGEPSK-SIPPGAKLYYSLTLHSVLPDF---DLAELPVEKR 166
M+ GE + + YG +G S ++PP A L Y + + +++ VE+R
Sbjct: 116 MKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEER 175
Query: 167 LDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMD 206
+ +RK GN + A+Q Y ++ ++ M
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF 215
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 98.5 bits (246), Expect = 6e-27
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 39 EDEWVDILGSGHIKKKITKHGE-PDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGD 97
+EW+DILG+G ++KK G +RP +G + + LE+ T V+ L +GD
Sbjct: 3 PEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGD 62
Query: 98 LELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
+++ +D +PLM++GE + +++ YG +G IPP A L +TL +
Sbjct: 63 CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRS-PYIPPHAALCLEVTLKTA 116
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 98.6 bits (245), Expect = 2e-24
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 28 PVIPDK-----PEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDD 82
P IP E ++ + D+ G I ++ + GE + P G I G+
Sbjct: 120 PKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGR 179
Query: 83 TLVETFDNLEICVG-DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGA 141
+ G D ++ G+D L M+ E+C + + R+G+G+ G+P I P A
Sbjct: 180 MFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNA 239
Query: 142 KLYYSLTLHSVLPDFDLAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201
+L Y +TL S + E+ +++L+ K +G ++ G AV Y + + +L+
Sbjct: 240 ELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE 299
Score = 92.4 bits (229), Expect = 4e-22
Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 9/161 (5%)
Query: 20 DKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKL 79
+ EE+P + E + + K + + G + P GD + GKL
Sbjct: 6 GAKNNEESPTATVAEQGE----DITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61
Query: 80 EDDTLVET----FDNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSK 135
+ ++ + +G +++ D + M+ GE C + + YG G K
Sbjct: 62 SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK 121
Query: 136 SIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGVKRKHR 176
IP A L++ + L + + + +R +
Sbjct: 122 -IPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSN 161
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 66.0 bits (161), Expect = 8e-14
Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 20 DKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKL 79
A V P +V+ E ++L + K+I K G P + C +
Sbjct: 22 GSAVVHSEPSQEGNVPPKVDSE-AEVLDEK-VSKQIIKEGHGSK-PSKYSTCFLHYRAWT 78
Query: 80 EDDTLVETFDN-------LEICVGDLELV-HGMDYVLPLMEMGEECQIEITARFGYGDKG 131
++ F++ +E+ +G + G+ + M+ GE + + YG +G
Sbjct: 79 KNSQHK--FEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEG 136
Query: 132 EPS-KSIPPGAKLYYSLTLHSVLPDFDLA---ELPVEKRLD 168
S ++PP A L Y + + + ++ VE+R+
Sbjct: 137 NFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG 177
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 66.4 bits (162), Expect = 2e-13
Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 13/133 (9%)
Query: 18 IVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFG 77
++ E+ E D + K I + G P GD + G
Sbjct: 22 TAEEMKATESGAQSAPLPMEGVDISPK--QDEGVLKVIKREGTGTEMPMIGDRVFVHYTG 79
Query: 78 KLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDK 130
L D T FD+ +G E++ D + M++GE C I + YG
Sbjct: 80 WLLDGT---KFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSA 136
Query: 131 GEPSKSIPPGAKL 143
G P K IPP A L
Sbjct: 137 GSPPK-IPPNATL 148
Score = 62.6 bits (152), Expect = 4e-12
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 37 EVE-----DEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNL 91
EVE E + G I ++I GE +P G + ++ G +D +
Sbjct: 151 EVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF 210
Query: 92 EICVGDL-ELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLH 150
EI G+ +L +G++ + ME GE + + + +G G+ IPP A+L Y L L
Sbjct: 211 EIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLK 270
Query: 151 SV 152
S
Sbjct: 271 SF 272
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 64.5 bits (157), Expect = 2e-12
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 50 HIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLELVHGMDYVLP 109
I KKI K G+ P+ D + +LED T+V + +E V D L + +
Sbjct: 128 GIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVK 187
Query: 110 LMEMGEECQIEITARFGYGDKGEPSK----SIPPGAKLYYSLTL 149
M+ GE+ + + ++G+G+ G P+ ++PP A L L L
Sbjct: 188 TMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLEL 231
Score = 62.9 bits (153), Expect = 5e-12
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 33 KPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-- 90
K EE E +G +KKK+ K GE P+ GD + G L D FD+
Sbjct: 1 KVGEENE------IGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGK---KFDSSR 51
Query: 91 -----LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYY 145
+ +G +++ G D + M+ GE I YG+ G P IP A L +
Sbjct: 52 DRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPT-IPANATLQF 110
Score = 62.5 bits (152), Expect = 8e-12
Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 12/144 (8%)
Query: 21 KADVEENPVIPDKPEEEVEDEWVDILGS------GHIKKKITKHGEPDTRPQRGDLCVIS 74
+ E +P ++ E V I KK+ K E RP G + +
Sbjct: 210 RPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVK 269
Query: 75 GFGKLED-----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 129
GKL+D + + E + ++ G+D + M+ GE + I + YG
Sbjct: 270 ITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGS 329
Query: 130 KGEPSK-SIPPGAKLYYSLTLHSV 152
+PP + + Y + L S
Sbjct: 330 TESKQDAIVPPNSTVIYEVELVSF 353
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 59.6 bits (145), Expect = 8e-12
Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 25 EENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTL 84
E + E + +DI G + K + + G D ++ G LE
Sbjct: 2 EGDDAPGQSLYERLSQRMLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMD- 59
Query: 85 VETFDN-------LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSI 137
FD+ + +G+ + GM+ L M GE + + YG G P I
Sbjct: 60 -RPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPL-I 117
Query: 138 PPGAKL 143
PP +
Sbjct: 118 PPNTTV 123
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 57.3 bits (139), Expect = 4e-11
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 35 EEEVEDEWVDILGSGHIKKKITKHGEPDTR--PQRGDLCVISGFGKLEDDTLVETFDN-- 90
E E E V++ G + K I K G+ P++G+ + GKLE V FD+
Sbjct: 2 TTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKV--FDSSF 59
Query: 91 -----LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKL 143
+ + E++ G D + M E+C + I + +GYGD+G IP + L
Sbjct: 60 DRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES-IPGNSVL 116
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 56.5 bits (137), Expect = 6e-11
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 48 SGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN--------------LEI 93
K I K G+ P++GD+ G L D T FD L
Sbjct: 4 PK-YTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGT---VFDTNIQTSSKKKKNAKPLSF 59
Query: 94 CVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKL 143
VG +++ G D L M GE+ ++EI + YG KG+P IPP KL
Sbjct: 60 KVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKL 109
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 55.4 bits (134), Expect = 3e-10
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 31 PDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN 90
P E ++ G + K + + G + P GD + GKL + FD+
Sbjct: 18 PTATVAEQGEDITSKKDRG-VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK---KFDS 73
Query: 91 -------LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKL 143
+G +++ D + M+ GE C + + YG G K IP A L
Sbjct: 74 SHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATL 132
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 55.0 bits (133), Expect = 4e-10
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 39 EDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------L 91
E + G + K I K G+ +P G + G LE+ T FD+
Sbjct: 4 EKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGT---KFDSSRDRGDQF 60
Query: 92 EICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKL 143
+G ++ G D + M GE + I + +GYGD G P K IP GA L
Sbjct: 61 SFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK-IPGGATL 111
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 54.1 bits (131), Expect = 5e-10
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHG 103
++ + G+ T P+RG CV+ G LED FD+ + +G E++ G
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK---KFDSSRDRNKPFKFMLGKQEVIRG 58
Query: 104 MDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKL 143
+ + M +G+ ++ I+ + YG G P IPP A L
Sbjct: 59 WEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATL 97
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 54.2 bits (131), Expect = 7e-10
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 35 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 90
E + + + + ++KK+ G+ T+PQ G + G+ D FD+
Sbjct: 11 TLEAQTQGPGSMSAQ-LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGK---QFDSSRSR 66
Query: 91 ---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSL 147
+ +G E++ G D + M +GE+ I + YG++G P IPP A L + +
Sbjct: 67 GKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPV-IPPKATLVFEV 125
Query: 148 TLHSV 152
L +V
Sbjct: 126 ELLAV 130
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 54.2 bits (131), Expect = 7e-10
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 12/120 (10%)
Query: 31 PDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN 90
E ++ G + K + + G + P GD + GKL + FD+
Sbjct: 2 APATVTEQGEDITSKKDRG-VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK---KFDS 57
Query: 91 -------LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKL 143
+G +++ D + M+ GE C + + YG G K IP A L
Sbjct: 58 SHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATL 116
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 53.4 bits (129), Expect = 1e-09
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 44 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVG 96
+++ +K G+ T P+ GDL I G LE+ FD+ + +G
Sbjct: 2 EVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQ---KFDSSVDRGSPFQCNIG 57
Query: 97 DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
+++ G D +P + +GE+ ++ I + YG +G P IPP + L + + L V
Sbjct: 58 VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKV 112
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 46.8 bits (112), Expect = 2e-07
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 63 TRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLMEMGE 115
+ ++GD+ + GKLED T FD+ +G +++ G D L M GE
Sbjct: 4 IKSRKGDVLHMHYTGKLEDGT---EFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGE 60
Query: 116 ECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDL 158
+ ++ I + GYG++G P K IP GA L + + L + +L
Sbjct: 61 KRKLVIPSELGYGERGAPPK-IPGGATLVFEVELLKIERRTEL 102
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 44.6 bits (106), Expect = 2e-06
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 51 IKKKITKHGEPDTR-PQRGDLCVISGFGKLEDDTLVETFDN---------LEICVGDLEL 100
+K ++ + R + GDL ++ G LE D F + + +G LE
Sbjct: 14 VKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDG--SLFHSTHKHNNGQPIWFTLGILEA 71
Query: 101 VHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
+ G D L M +GE+ ++ I GYG +G+ IPP + L +++ L +
Sbjct: 72 LKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKG--KIPPESTLIFNIDLLEI 121
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 45.6 bits (108), Expect = 3e-06
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
Query: 12 DLNSFEIVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLC 71
+ + + + D+E+N +I E+ V SG +K + G + G
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGGST-VVTTESG-LKYEDLTEGSGAE-ARAGQTV 125
Query: 72 VISGFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLMEMGEECQIEITAR 124
+ G L D FD+ +G ++ G D + M++G ++ I +
Sbjct: 126 SVHYTGWLTDGQ---KFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQ 182
Query: 125 FGYGDKGEPSKSIPPGAKL 143
GYG +G IPP A L
Sbjct: 183 LGYGARGAAG-VIPPNATL 200
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 44.7 bits (106), Expect = 4e-06
Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 22/149 (14%)
Query: 35 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 90
E++ L SG + + G P D C + G+L D T FD+
Sbjct: 24 EQKAAQPDAVKLPSG-LVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGT---VFDSSRER 79
Query: 91 ---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSL 147
E++ G L LM G+ ++ I YG G IPP + L + +
Sbjct: 80 GKPTTFRPN--EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGM-IPPYSPLEFDV 136
Query: 148 TLHSVLP--------DFDLAELPVEKRLD 168
L S+ + D E+ +
Sbjct: 137 ELISIKDGGKGRTAEEVDEILRKAEEDRE 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 1e-05
Identities = 32/218 (14%), Positives = 62/218 (28%), Gaps = 52/218 (23%)
Query: 17 EIVDKADVEENP-----VIPDKPEEEVEDEWVDILGSGH--IKKKITKHGEPDTRPQRGD 69
I+ D + K EE V+ ++L + + I E +P
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQ-RQPSMMT 109
Query: 70 LCVISGFGKLEDDTLV---------ETFDNLEICVGDLE-----LVHGMD----YVLPLM 111
I +L +D V + + L + +L L+ G+ + L
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL- 168
Query: 112 EMGEECQ-IEITARFGY-------GDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 163
+ C ++ + + + P + KL Y + P++
Sbjct: 169 ---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-----PNW------- 213
Query: 164 EKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLD 201
R D K R + + + Y L L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Score = 29.4 bits (65), Expect = 0.89
Identities = 18/134 (13%), Positives = 32/134 (23%), Gaps = 30/134 (22%)
Query: 89 DNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARF--------GYGDKGEPSKSIPPG 140
N V + + + + C+I +T RF
Sbjct: 251 LN----VQNAKAWNAFNL---------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 141 AKLYYSLTLHSVLPDFDLAELPVEKR----LDFGV----KRKHRGNWFYSRGDNSFAV-Q 191
+L D +LP E + R W + N +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 192 CYRRSLDFLDSSNM 205
SL+ L+ +
Sbjct: 358 IIESSLNVLEPAEY 371
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 40.7 bits (96), Expect = 5e-05
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 35 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 90
V SG +K + G + G + G L D FD+
Sbjct: 15 VPRGSHMTVVTTESG-LKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQ---KFDSSKDR 69
Query: 91 ---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKL 143
+G ++ G D + M++G ++ I + GYG +G IPP A L
Sbjct: 70 NDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGG-VIPPNATL 124
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 40.1 bits (94), Expect = 2e-04
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 157 DLAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTNN 209
+ + E+++ K GN F+ + + + A+ Y+ +LDF + +
Sbjct: 25 SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 40.0 bits (94), Expect = 2e-04
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 35 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 90
E V +L SG ++ K+ G +P + D + G+L D T FD+
Sbjct: 93 TENKNKPGVVVLPSG-LQYKVINSGN-GVKPGKSDTVTVEYTGRLIDGT---VFDSTEKT 147
Query: 91 ---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSL 147
V +++ G L LM G +I + + YG + I P L + +
Sbjct: 148 GKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRS-VGGPIGPNETLIFKI 204
Query: 148 TLHSVLPD 155
L SV
Sbjct: 205 HLISVKKS 212
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 38.9 bits (91), Expect = 5e-04
Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 12/122 (9%)
Query: 35 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 90
E V L G I G +P + G+L D FD
Sbjct: 104 AGEKAKPGVKELADG-ILMTELTPGT-GPKPDANGRVEVRYVGRLPDGK---IFDQSTQP 158
Query: 91 LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLH 150
+ ++ G L M G + ++ I + YG +G I P L + + L
Sbjct: 159 QWFRLD--SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEG-AGDLIDPFTPLVFEIELI 215
Query: 151 SV 152
+V
Sbjct: 216 AV 217
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 38.1 bits (89), Expect = 6e-04
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 164 EKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTN 208
+ +L + +GN + + D A+ YR +L LD+ +
Sbjct: 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREK 49
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 37.0 bits (86), Expect = 0.002
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 16/117 (13%)
Query: 43 VDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICV 95
V +G + ++ + G+ P+ D V++ G L D FDN L +
Sbjct: 116 VKTSSTG-LVYQVVEAGK-GEAPKDSDTVVVNYKGTLIDGK---EFDNSYTRGEPLSFRL 170
Query: 96 GDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
++ G L ++ G + ++ I YG G P IPP + L + + L V
Sbjct: 171 D--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP--GIPPNSTLVFDVELLDV 223
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 36.2 bits (84), Expect = 0.002
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 22/127 (17%)
Query: 43 VDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICV 95
+ SG + G +G L GKLE+ FD+ L +
Sbjct: 7 FSVSPSG-LAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGK---VFDSSYNRGKPLTFRI 61
Query: 96 GDLELVHGMD------YVLPLMEMGEECQIEITARFGYGDKG----EPSKSIPPGAKLYY 145
G E++ G D +P M G + + I YGD+G S IPP + L +
Sbjct: 62 GVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLF 121
Query: 146 SLTLHSV 152
+
Sbjct: 122 DIEYIGK 128
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 34.3 bits (79), Expect = 0.021
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 17/125 (13%)
Query: 99 ELVHGMDYVLPLMEMG-------EECQIEITARFGYGDKGE--PSKSIPPGAKLYYSLTL 149
+++ GM L + + C I + GE K +
Sbjct: 151 QVIKGMGVAKILENVEVKGEKPAKLCVIA--------ECGELKEGDDWGIFPKDGSGDSH 202
Query: 150 HSVLPDFDLAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTNN 209
D D+ V+K L K+ GN F+ + A++ Y + L +++ S +
Sbjct: 203 PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 262
Query: 210 ASRSS 214
A +
Sbjct: 263 ADGAK 267
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 30.7 bits (70), Expect = 0.20
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 77 GKLEDDTLVE-TFDN---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 129
KL+D T E T +N +GD L G++ L +++G++ + +G
Sbjct: 37 LKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGV 93
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 29.7 bits (67), Expect = 0.59
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 77 GKLEDDTLVETFDN---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 129
+ ED LV+ L+ G L+ G++ L E+G++ + + A YG
Sbjct: 15 VRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ 70
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 29.2 bits (66), Expect = 0.71
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 77 GKLEDDTLVE-TFDN--LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 129
+ ED LV+ + + L+ G L+ G++ L E+G++ + + A YG
Sbjct: 15 VRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ 70
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 28.3 bits (64), Expect = 0.81
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 174 KHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204
K +GN S G+ A+QCY ++ LD N
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIK-LDPHN 37
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Length = 151
Score = 28.5 bits (64), Expect = 1.1
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 17/73 (23%)
Query: 77 GKLEDDTLVETFDN-----------------LEICVGDLELVHGMDYVLPLMEMGEECQI 119
GKLE + +T LE VG+ +L+ G + + ME+G+E +
Sbjct: 14 GKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTV 73
Query: 120 EITARFGYGDKGE 132
+I A YG++ E
Sbjct: 74 KIPAEKAYGNRNE 86
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase,
protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Length = 695
Score = 29.0 bits (66), Expect = 1.2
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 18/62 (29%)
Query: 158 LAELPVEKRL-----------DFGVKRKHRGNWFYSR--GDNSFAVQCYRRSLD-----F 199
LA+ P + L + G +FY R D A+ +R+
Sbjct: 50 LAKFPGREALAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVL 109
Query: 200 LD 201
LD
Sbjct: 110 LD 111
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 28.3 bits (64), Expect = 1.6
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 21/60 (35%)
Query: 61 PDTRPQRGDLCVISGFGKLED----DTL----VETFDNLE-------------ICVGDLE 99
P G+ C++SG+G L + L V C G +
Sbjct: 108 ASQCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQ 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 27.6 bits (62), Expect = 1.7
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 159 AELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204
L E+ + K GN + AV Y ++++ L+ +N
Sbjct: 1 GPLGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE-LNPAN 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 27.8 bits (62), Expect = 2.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 174 KHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204
K GN +R + S A+ Y ++L + +N
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALS-IAPAN 44
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 27.8 bits (62), Expect = 2.1
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 135 KSIPPGAKLYYSL-TLHSVLPDFDLAELPVEKRL----DFGVKRKHRGNWFYSRGDNSFA 189
K+ +KL L + ++D A L ++ L + + RG A
Sbjct: 48 KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA 107
Query: 190 VQCYRRSLDFLDSSNMDTNN 209
++ Y + L L++ N+ N
Sbjct: 108 LRMYEKILQ-LEADNLAANI 126
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 26.9 bits (60), Expect = 2.3
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 174 KHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204
K +GN + +G AV CY + + N
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLIT-AQPQN 37
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 27.8 bits (62), Expect = 2.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDDT 83
+ DT G + +SGFG +E+
Sbjct: 206 DNDTFYDLGLMGYVSGFGVMEEKI 229
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 26.6 bits (59), Expect = 3.0
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 176 RGNWFYSRGDNSFAVQCYRRSLD 198
GN + GD A+ Y+ +++
Sbjct: 41 MGNAYRKLGDWQKALNNYQSAIE 63
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 27.8 bits (62), Expect = 3.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDDT 83
+ DT G + +SGFG +E+
Sbjct: 274 DNDTFYDLGLMGYVSGFGVMEEKI 297
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 26.8 bits (60), Expect = 3.4
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 86 ETFDN--LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 129
E D L G L+ G++ L E GE Q + A YG
Sbjct: 20 EVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGP 65
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 27.1 bits (61), Expect = 3.5
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 21/60 (35%)
Query: 61 PDTRPQRGDLCVISGFGKLED----DTL----VETFDNLE-------------ICVGDLE 99
C I G+GK D DT+ + E +C GD +
Sbjct: 107 ERDCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEK 166
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 27.6 bits (61), Expect = 3.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDD 82
Q D C++SG+G+ +D+
Sbjct: 438 WSPYLFQPNDTCIVSGWGREKDN 460
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 26.9 bits (60), Expect = 3.7
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 160 ELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204
E P + L + K + N ++ D A++ Y ++++ L+ SN
Sbjct: 3 EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE-LNPSN 46
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 27.2 bits (61), Expect = 3.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDDT 83
+ DT G + +SGFG +E+
Sbjct: 117 DNDTFYDLGLMGYVSGFGVMEEKI 140
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 26.4 bits (59), Expect = 3.8
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 174 KHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204
K++GN ++ +GD A++ Y ++ D N
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVK-RDPEN 46
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L*
3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L
1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L ...
Length = 143
Score = 26.7 bits (60), Expect = 4.0
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 9 NNGDLNSFE--IVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKIT 56
DL E +VD ++ +I + E ++ +G + +T
Sbjct: 77 RLSDLAKVEGGVVDLNTLKAANIIGIQIEF------AKVILAGEVTTPVT 120
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 26.8 bits (60), Expect = 4.4
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 23/62 (37%)
Query: 61 PDTRPQRGDLCVISGFGKLED------DTL----VETFDNLE-------------ICVGD 97
P P+ G C+ SG+G +E D L ++ N E +CVG
Sbjct: 119 PTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGH 178
Query: 98 LE 99
LE
Sbjct: 179 LE 180
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein,
chaperone; 1.95A {Methanocaldococcus jannaschii} PDB:
3pra_A
Length = 157
Score = 26.6 bits (59), Expect = 4.6
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 91 LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 129
+ I G+ +++ G+D + M++GEE ++ + +G
Sbjct: 44 VAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGK 82
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 26.9 bits (60), Expect = 4.6
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDDTLVETFDNL 91
G C ++G+G + + T L
Sbjct: 113 AAQASFPNGLHCTVTGWGHVAPSVSLLTPKPL 144
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 26.9 bits (60), Expect = 4.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 61 PDTRPQRGDLCVISGFGKLEDD 82
P+ Q G + ++SG+GK
Sbjct: 126 PEGPQQEGAMVIVSGWGKQFLQ 147
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 26.4 bits (59), Expect = 5.1
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 77 GKLEDDTLVE--TFDN--LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 129
+ + ++V LE +G +++ G++ + ++GE ++ I YG
Sbjct: 19 VREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGV 75
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 26.1 bits (58), Expect = 5.1
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 174 KHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNM 205
K GN Y + D A++ Y ++ + LD +NM
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKE-LDPTNM 38
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 26.7 bits (60), Expect = 5.2
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 14/54 (25%)
Query: 60 EPDTRPQRGDLCVISGFGKLED-----DTL----VETFDNLE-----ICVGDLE 99
+ + G C ++G+G V + +C G L
Sbjct: 112 LQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLT 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 26.2 bits (58), Expect = 5.3
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 160 ELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMD 206
P + + GN + GD A+ Y ++L LD++ D
Sbjct: 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALG-LDATPQD 63
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 26.0 bits (58), Expect = 5.4
Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 174 KHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204
K++GN + +GD A++ Y ++ + +
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIK-RNPKD 49
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 27.0 bits (60), Expect = 5.5
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDDTLVET 87
E ++ + D+ SG+G + L
Sbjct: 274 EAESFMRTDDIGTASGWGLTQRGFLARN 301
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 26.9 bits (60), Expect = 5.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDD 82
EP + G C I+G+G L+++
Sbjct: 152 EPGSTFPAGHKCQIAGWGHLDEN 174
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 26.7 bits (60), Expect = 5.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 61 PDTRPQRGDLCVISGFGKLEDD 82
+ P+ G C+ISG+G +
Sbjct: 110 ANLCPKVGQKCIISGWGTVTSP 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 26.5 bits (59), Expect = 5.8
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 11/69 (15%)
Query: 141 AKLYYSL-TLHSVLPDFDLAELPVEKRLDFGVKRKHR----------GNWFYSRGDNSFA 189
+ Y + T+ D A EK L + + + G+ + A
Sbjct: 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166
Query: 190 VQCYRRSLD 198
Q + R+ D
Sbjct: 167 QQHWLRARD 175
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J*
1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I*
3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Length = 156
Score = 26.4 bits (59), Expect = 6.0
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 9 NNGDLNSFE--IVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKIT 56
L E D+ +E ++ K + V +L SG I + +T
Sbjct: 76 KLSQLQDLEDTTFDRDTLEAYRLVRRK------NRPVKLLASGEISRAVT 119
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 26.4 bits (59), Expect = 6.1
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 23/62 (37%)
Query: 61 PDTRPQRGDLCVISGFGKLED------DTL----VETFDNLE-------------ICVGD 97
P P+ G C SG+G + TL + N + +C
Sbjct: 118 PTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATH 177
Query: 98 LE 99
+
Sbjct: 178 RD 179
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 26.3 bits (59), Expect = 6.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 61 PDTRPQRGDLCVISGFGKLEDD 82
P T G + +G+G D
Sbjct: 109 PSTDVGVGTVVTPTGWGLPSDS 130
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 26.3 bits (59), Expect = 6.2
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 13/53 (24%)
Query: 60 EPDTRPQRGDLCVISGFGKLED-----DTL----VETFDNL----EICVGDLE 99
R G C+ G+G L L V +L +C
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRG 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 25.7 bits (57), Expect = 7.2
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 174 KHRGNWFYSRGDNSFAVQCYRRSLDFLDSSN 204
+ G ++++ D AV+ Y + +
Sbjct: 8 RLEGKEYFTKSDWPNAVKAYTEMIK-RAPED 37
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 26.7 bits (59), Expect = 7.3
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 176 RGNWFYSRGDNSFAVQCYRRSL 197
G ++ S A + + +S
Sbjct: 379 VGIYYLCVNKISEARRYFSKSS 400
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 26.4 bits (59), Expect = 7.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDD 82
EP + G C I+G+G L+++
Sbjct: 117 EPGSTFPAGHKCQIAGWGHLDEN 139
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 26.3 bits (59), Expect = 7.5
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 13/53 (24%)
Query: 60 EPDTRPQRGDLCVISGFGKLED-----DTL----VETFDNL----EICVGDLE 99
+ D G C+ G+G++ L V IC
Sbjct: 114 QQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPR 166
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 26.0 bits (58), Expect = 8.4
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 23/62 (37%)
Query: 61 PDTRPQRGDLCVISGFGKLED------DTL----VETFDNLE-------------ICVGD 97
P P+ G C+ SG+G L + N + +C G+
Sbjct: 116 PTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGE 175
Query: 98 LE 99
+E
Sbjct: 176 ME 177
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 26.1 bits (58), Expect = 9.3
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDD 82
PQ G C I+GFGK
Sbjct: 147 SMYNDPQFGTSCEITGFGKENST 169
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 25.9 bits (57), Expect = 9.4
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 9 NNGDLNSFEIVDKADV-----EENPVIPDKPEEEVEDEWVDILGSGHIKKKIT 56
N D+ + D +V + VI P + IL G + KK+T
Sbjct: 146 NLTDIENAGFQDGEEVSLETLKAKRVI--NPSGRERKLPLKILADGELSKKLT 196
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 26.1 bits (58), Expect = 9.4
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 60 EPDTRPQRGDLCVISGFGKLEDD 82
PQ G C I+GFGK
Sbjct: 124 SMYNDPQFGTSCEITGFGKENST 146
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A
{Methanocaldococcus jannaschii} PDB: 3prd_A
Length = 231
Score = 25.9 bits (57), Expect = 9.7
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 91 LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 129
+ I G+ +++ G+D + M++GEE ++ + +G
Sbjct: 44 VAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGK 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.137 0.409
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,440,522
Number of extensions: 212568
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 101
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.9 bits)