RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1750
(214 letters)
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 68.9 bits (168), Expect = 5e-16
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 44 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLELV-H 102
D+L G I ++ + GE + P G I G+ + G+ +
Sbjct: 3 DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIPI 62
Query: 103 GMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
G+D L M+ E+C + + R+G+G+ G+P I P A+L Y +TL S
Sbjct: 63 GIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 62.8 bits (152), Expect = 1e-13
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 41 EWVDIL--GSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLE----IC 94
E VDI + K I + G P GD + G L D T ++ + +
Sbjct: 1 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 60
Query: 95 VGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
+G E++ D + M++GE C I + YG G P K IPP A L + + L
Sbjct: 61 LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVELFEF 117
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 59.1 bits (142), Expect = 3e-12
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVET-----------FDNLEICVGDLE 99
K + K G+ P++GD+ G L+D T+ +T L VG +
Sbjct: 3 YTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGK 62
Query: 100 LVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
++ G D L M GE+ ++EI + YG KG+P IPP AKL + + L +
Sbjct: 63 VIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI 115
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 118
Score = 58.6 bits (141), Expect = 4e-12
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 43 VDI--LGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN----LEICVG 96
+DI G + K I K G+ +P G + G LE+ T ++ + +G
Sbjct: 2 IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLG 61
Query: 97 DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
++ G D + M GE + I + +GYGD G P K IP GA L + + L
Sbjct: 62 RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK-IPGGATLIFEVELFEW 116
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 58.6 bits (141), Expect = 5e-12
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 49 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVG-DLELVHGMDYV 107
G I ++I GE +P G + ++ G +D + EI G +L+L +G++
Sbjct: 8 GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERA 67
Query: 108 LPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
+ ME GE + + + +G G+ IPP A+L Y L L S
Sbjct: 68 IQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 112
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 111
Score = 55.2 bits (132), Expect = 7e-11
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 49 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTL----VETFDNLEICVGDLELVHGM 104
+ K + + G + P GD + GKL + + + +G +++
Sbjct: 4 RGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAW 63
Query: 105 DYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
D + M+ GE C + + YG G K IP A L++ + L
Sbjct: 64 DIGVATMKKGEICHLLCKPEYAYGATGSLPK-IPSNATLFFEVELLDF 110
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an
immunophilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 54.0 bits (129), Expect = 2e-10
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 51 IKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGMDY 106
++ + G+ T P+RG CV+ G LED ++ + +G E++ G +
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEE 61
Query: 107 VLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
+ M +G+ ++ I+ + YG G P IPP A L + + L +
Sbjct: 62 GVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKL 106
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 113
Score = 46.7 bits (110), Expect = 9e-08
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 44 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLE 99
+++ +K G+ T P+ GDL I G LE+ D+ V+ + +G +
Sbjct: 2 EVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQ 60
Query: 100 LVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
++ G D +P + +GE+ ++ I + YG +G P IPP + L + + L V
Sbjct: 61 VIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKV 112
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Legionella pneumophila [TaxId: 446]}
Length = 204
Score = 48.3 bits (114), Expect = 1e-07
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 63 TRPQRGDLCVISGFGKLEDDTLVETFDNLEIC--VGDLELVHGMDYVLPLMEMGEECQIE 120
+P + D + G+L D T+ ++ + +++ G L LM G +I
Sbjct: 111 VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIY 170
Query: 121 ITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
+ + YG + I P L + + L SV
Sbjct: 171 VPSGLAYGPRSVGGP-IGPNETLIFKIHLISV 201
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 47.5 bits (112), Expect = 1e-07
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 4/122 (3%)
Query: 35 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLED--DTLVETFDNLE 92
E++ L SG + + G P D C + G+L D
Sbjct: 21 EQKAAQPDAVKLPSG-LVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP 79
Query: 93 ICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
E++ G L LM G+ ++ I YG G IPP + L + + L S+
Sbjct: 80 TTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGM-IPPYSPLEFDVELISI 138
Query: 153 LP 154
Sbjct: 139 KD 140
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA
{Escherichia coli [TaxId: 562]}
Length = 210
Score = 45.2 bits (106), Expect = 1e-06
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 50 HIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFD--NLEICVGDLELVHGMDYV 107
+ ++ + G+ + P+ D V++ G L D + + ++ G
Sbjct: 108 GLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEG 166
Query: 108 LPLMEMGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
L ++ G + ++ I YG G P IPP + L + + L V
Sbjct: 167 LKNIKKGGKIKLVIPPELAYGKAGVP--GIPPNSTLVFDVELLDV 209
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma
genitalium [TaxId: 2097]}
Length = 85
Score = 38.1 bits (88), Expect = 6e-05
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 64 RPQRGDLCVISGFGKLEDDTLVETFD-NLEICVGDLELVHGMDYVLPLMEMGEECQIEIT 122
+ GD+ +I G +++ L N E+ +G + G + L M++ ++ + +T
Sbjct: 1 KLANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALT 60
Query: 123 ARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 152
Y K + + + L ++
Sbjct: 61 FPSDYHVKE------LQSKPVTFEVVLKAI 84
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 36.8 bits (84), Expect = 4e-04
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 94 CVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPSKS----IPPGAKLYYSLTL 149
+ + +P M G + + I YGD+G K IPP + L + +
Sbjct: 62 VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 32.3 bits (72), Expect = 0.025
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 160 ELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTNN 209
E+ E++L+ K RG ++ G A+ Y++ + +L+ + +N
Sbjct: 3 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE 52
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 30.7 bits (68), Expect = 0.068
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 157 DLAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTNNA 210
+ + E+++ K GN F+ + + + A+ Y+ +LDF + +
Sbjct: 4 SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI 57
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 29.9 bits (66), Expect = 0.15
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 160 ELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYRRSLDFLDSSNMDTNNASRSS 214
E+ +++L+ K +G ++ G AV Y + + +L+ + S++S
Sbjct: 5 EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS 59
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 28.9 bits (63), Expect = 0.35
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 155 DFDLAELPVEKRLDFGVKRKHRGNWFYSRGDNSFAVQCYR 194
D D+ V+K L K+ GN F+ + A++ Y
Sbjct: 12 DADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYT 51
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 26.5 bits (57), Expect = 2.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 174 KHRGNWFYSRGDNSFAVQCYRRSLD 198
K +GN + A CY R++
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAIT 32
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 26.3 bits (57), Expect = 3.5
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 168 DFGVKRKHRGNWFYSRGDNSFAVQCYRRSL----DFLDSSN 204
G S+GD+ + Y RS+ F +S
Sbjct: 184 SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 115
Score = 25.1 bits (55), Expect = 4.0
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 4 SISNGNNGDLNSFEIVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKIT 56
+ ++N I A +E V+P K +LGSG ++K +T
Sbjct: 34 EKPRRTHAEVNLGRIERYAQEDETVVVPGK-----------VLGSGVLQKDVT 75
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 25.0 bits (53), Expect = 4.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 174 KHRGNWFYSRGDNSFAVQCYRRSLDF 199
K +GN S G+ A+QCY ++
Sbjct: 7 KEKGNKALSVGNIDDALQCYSEAIKL 32
>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic
initiation translation factor 5a (eIF5a) {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 65
Score = 23.5 bits (51), Expect = 6.5
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 9 NNGDLNSFEIVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITK 57
+ D + E+ K EE + E E IL + KI +
Sbjct: 21 DMRDYKTIEVPMKYVEEE---AKGRLAPGAEVEVWQILD----RYKIIR 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.137 0.409
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 848,275
Number of extensions: 41033
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 22
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)