BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17501
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TJF|A Chain A, The Crystal Structure Of The N-Terminal Domain Of Cap
          Indicates Variable Oligomerisation
 pdb|1TJF|B Chain B, The Crystal Structure Of The N-Terminal Domain Of Cap
          Indicates Variable Oligomerisation
          Length = 186

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 41/75 (54%)

Query: 24 SMSVAAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQAQQQFLTVASQSKDPGQSD 83
          S SV  F ++V   +  ++ALS K+  +V    + + +A  A++  +  ASQSK P Q  
Sbjct: 8  SASVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQET 67

Query: 84 KMRLLQPTSDKIAAI 98
           + L++P ++  A +
Sbjct: 68 LLELIKPLNNFAAEV 82


>pdb|1S0P|A Chain A, Structure Of The N-Terminal Domain Of The Adenylyl
          Cyclase- Associated Protein (Cap) From Dictyostelium
          Discoideum.
 pdb|1S0P|B Chain B, Structure Of The N-Terminal Domain Of The Adenylyl
          Cyclase- Associated Protein (Cap) From Dictyostelium
          Discoideum
          Length = 176

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 26 SVAAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQAQQQFLTVASQSKDPGQSDKM 85
          SV  F ++V   +  ++ALS K+  +V    + + +A  A++  +  ASQSK P Q   +
Sbjct: 1  SVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLL 60

Query: 86 RLLQPTSDKIAAI 98
           L++P ++  A +
Sbjct: 61 ELIKPLNNFAAEV 73


>pdb|2FE1|A Chain A, Crystal Structure Of Pae0151 From Pyrobaculum Aerophilum
          Length = 156

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 39  ASYIALSNKIGGDVATHAKLVSEAFQA 65
           A+Y+AL+ KIGG + T  + ++E F A
Sbjct: 126 AAYVALAEKIGGKLLTLDRQLAEKFPA 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.124    0.332 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,524,893
Number of Sequences: 62578
Number of extensions: 72821
Number of successful extensions: 115
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)