Query psy17501
Match_columns 101
No_of_seqs 106 out of 222
Neff 5.6
Searched_HMMs 29240
Date Sat Aug 17 00:12:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s0p_A CAP, adenylyl cyclase-a 99.9 3.5E-25 1.2E-29 161.5 9.5 75 26-100 1-75 (176)
2 3mp7_B Preprotein translocase 78.4 0.89 3E-05 27.3 1.5 24 66-89 12-35 (61)
3 1h3l_A RNA polymerase sigma fa 73.0 7.2 0.00025 22.8 4.6 41 24-64 8-48 (87)
4 2wwb_B SEC61gamma, protein tra 65.7 7.7 0.00026 23.6 3.6 22 68-89 17-38 (68)
5 1rh5_B Preprotein translocase 61.7 6.6 0.00023 24.3 2.8 23 67-89 17-39 (74)
6 2o7g_A Probable RNA polymerase 55.8 22 0.00074 21.7 4.6 37 27-64 23-59 (112)
7 2ww9_B Protein transport prote 54.2 14 0.00048 23.2 3.4 21 69-89 32-52 (80)
8 1gl2_D Syntaxin 8, vesicle tra 53.5 23 0.0008 20.4 4.2 41 33-73 13-56 (65)
9 4gip_A Fusion glycoprotein F2; 48.5 12 0.0004 23.7 2.4 17 84-100 57-73 (81)
10 2q1z_A RPOE, ECF SIGE; ECF sig 47.3 28 0.00097 22.6 4.3 38 27-64 26-63 (184)
11 1n7s_D SNAP-25A; neuronal snar 42.3 45 0.0015 19.2 4.2 29 33-61 14-42 (66)
12 2nps_D Syntaxin-6; vesicle fus 42.2 42 0.0014 20.3 4.2 28 33-60 23-50 (82)
13 1q2z_A ATP-dependent DNA helic 40.2 56 0.0019 21.2 4.9 66 26-93 5-75 (120)
14 1rw2_A ATP-dependent DNA helic 39.0 91 0.0031 21.3 6.8 70 22-93 32-106 (152)
15 1or7_A Sigma-24, RNA polymeras 31.6 37 0.0013 22.2 2.9 37 27-64 22-58 (194)
16 1urq_A M-tomosyn isoform; tran 31.1 82 0.0028 18.4 6.7 46 31-76 17-62 (63)
17 3n0r_A Response regulator; sig 26.7 73 0.0025 22.9 4.0 37 28-64 21-57 (286)
18 3ugo_A RNA polymerase sigma fa 25.6 43 0.0015 24.1 2.5 37 28-64 110-146 (245)
19 1sfc_D Protein (SNAP-25B), pro 25.2 1.1E+02 0.0039 18.6 4.2 38 25-62 22-62 (87)
20 1rp3_A RNA polymerase sigma fa 25.2 1.5E+02 0.0052 19.6 6.0 58 28-89 12-73 (239)
21 1vh6_A Flagellar protein FLIS; 21.9 1.9E+02 0.0064 19.4 7.4 70 28-98 50-120 (145)
22 2da7_A Zinc finger homeobox pr 21.6 57 0.0019 19.9 2.1 25 63-87 13-38 (71)
No 1
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=99.92 E-value=3.5e-25 Score=161.54 Aligned_cols=75 Identities=28% Similarity=0.492 Sum_probs=72.8
Q ss_pred hHHHHHHHhhchhHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHhhHHHHHHHHHhh
Q psy17501 26 SVAAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQAQQQFLTVASQSKDPGQSDKMRLLQPTSDKIAAIHI 100 (101)
Q Consensus 26 sV~afDeli~~~l~~fv~lS~~IGg~V~e~a~lv~~aF~~qR~fL~~As~~kKP~~~~~~~lLkPls~~I~~i~~ 100 (101)
||++||++|+++|++|+++|++|||+|++|+++|.+||++||+||++|++||||++++|+++|+||+++|++|++
T Consensus 1 sV~afD~~i~~~l~~~~~~s~~iGg~v~~~a~~v~~aF~~qr~~L~~as~~kKP~~~~~~~lL~pl~~~i~~i~~ 75 (176)
T 1s0p_A 1 SVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGK 75 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999988899999999999999975
No 2
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=78.44 E-value=0.89 Score=27.32 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=18.6
Q ss_pred HHHHHHHHhhcCCCCchHHHHHhh
Q psy17501 66 QQQFLTVASQSKDPGQSDKMRLLQ 89 (101)
Q Consensus 66 qR~fL~~As~~kKP~~~~~~~lLk 89 (101)
-++..++-..|+|||..+|....+
T Consensus 12 ~kd~~rvlk~~~KPd~~Ef~~iak 35 (61)
T 3mp7_B 12 WKESRRAFLVTKKPNWATYKRAAK 35 (61)
T ss_dssp HHHHTHHHHHSCCCCTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456667778999999988877654
No 3
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=73.01 E-value=7.2 Score=22.83 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=36.3
Q ss_pred chhHHHHHHHhhchhHHHHHHHhhHhhHHHHHHHHHHHHHH
Q psy17501 24 SMSVAAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQ 64 (101)
Q Consensus 24 p~sV~afDeli~~~l~~fv~lS~~IGg~V~e~a~lv~~aF~ 64 (101)
...-.+|++++..+-..+......+.++-...-++|+++|-
T Consensus 8 ~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl 48 (87)
T 1h3l_A 8 AERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYA 48 (87)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999988899999999986
No 4
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=65.72 E-value=7.7 Score=23.62 Aligned_cols=22 Identities=5% Similarity=0.243 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCCCchHHHHHhh
Q psy17501 68 QFLTVASQSKDPGQSDKMRLLQ 89 (101)
Q Consensus 68 ~fL~~As~~kKP~~~~~~~lLk 89 (101)
+-..+-..|+|||-.+|....+
T Consensus 17 ~~~r~lk~~~KPdr~Ef~~iak 38 (68)
T 2wwb_B 17 DSIRLVKRCTKPDRKEFQKIAM 38 (68)
T ss_dssp HHHHHHHHCCCCCTHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHH
Confidence 3344556899999988876653
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=61.70 E-value=6.6 Score=24.30 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCCCchHHHHHhh
Q psy17501 67 QQFLTVASQSKDPGQSDKMRLLQ 89 (101)
Q Consensus 67 R~fL~~As~~kKP~~~~~~~lLk 89 (101)
++..++-..|+|||..+|....+
T Consensus 17 kd~~rvlk~~~KPdr~EF~~iak 39 (74)
T 1rh5_B 17 EECRRVWLVLKKPTKDEYLAVAK 39 (74)
T ss_dssp HHHHHHHHSEECCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Confidence 45566778999999988876543
No 6
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=55.83 E-value=22 Score=21.67 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHHHHHhhchhHHHHHHHhhHhhHHHHHHHHHHHHHH
Q psy17501 27 VAAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQ 64 (101)
Q Consensus 27 V~afDeli~~~l~~fv~lS~~IGg~V~e~a~lv~~aF~ 64 (101)
-.+|++++..+-..+......+ ++-...-++++++|-
T Consensus 23 ~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl 59 (112)
T 2o7g_A 23 GRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFL 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Confidence 3689999999888888888889 887888888888876
No 7
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=54.15 E-value=14 Score=23.19 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=15.5
Q ss_pred HHHHHhhcCCCCchHHHHHhh
Q psy17501 69 FLTVASQSKDPGQSDKMRLLQ 89 (101)
Q Consensus 69 fL~~As~~kKP~~~~~~~lLk 89 (101)
-..+-..|+|||-.+|....+
T Consensus 32 ~~rvlk~~~KPdr~Ef~~iak 52 (80)
T 2ww9_B 32 GTQFLAKCKKPDLKEYTKIVK 52 (80)
T ss_dssp HHHHHHSCCCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 344557899999988876654
No 8
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=53.51 E-value=23 Score=20.42 Aligned_cols=41 Identities=7% Similarity=0.281 Sum_probs=30.5
Q ss_pred HhhchhHHHHHHHhhHhhHHHHHHHHHHH---HHHHHHHHHHHH
Q psy17501 33 IVAGPLASYIALSNKIGGDVATHAKLVSE---AFQAQQQFLTVA 73 (101)
Q Consensus 33 li~~~l~~fv~lS~~IGg~V~e~a~lv~~---aF~~qR~fL~~A 73 (101)
-+.+.|..+-.++..||.++..|..++.. -|+.-..-|..+
T Consensus 13 ~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~ 56 (65)
T 1gl2_D 13 ALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTE 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999887654 444444444443
No 9
>4gip_A Fusion glycoprotein F2; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=48.47 E-value=12 Score=23.70 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=15.3
Q ss_pred HHHHhhHHHHHHHHHhh
Q psy17501 84 KMRLLQPTSDKIAAIHI 100 (101)
Q Consensus 84 ~~~lLkPls~~I~~i~~ 100 (101)
+..+|.||.+.|..|++
T Consensus 57 lt~lL~Pi~daL~~I~~ 73 (81)
T 4gip_A 57 VTKLLQPIGENLETIRN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 78999999999999875
No 10
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=47.35 E-value=28 Score=22.60 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=32.9
Q ss_pred HHHHHHHhhchhHHHHHHHhhHhhHHHHHHHHHHHHHH
Q psy17501 27 VAAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQ 64 (101)
Q Consensus 27 V~afDeli~~~l~~fv~lS~~IGg~V~e~a~lv~~aF~ 64 (101)
-.+|++++..+-..+......+.++-.+.-+++.++|-
T Consensus 26 ~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l 63 (184)
T 2q1z_A 26 EAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMA 63 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Confidence 46799999999999999999998888888888888876
No 11
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=42.31 E-value=45 Score=19.22 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=24.9
Q ss_pred HhhchhHHHHHHHhhHhhHHHHHHHHHHH
Q psy17501 33 IVAGPLASYIALSNKIGGDVATHAKLVSE 61 (101)
Q Consensus 33 li~~~l~~fv~lS~~IGg~V~e~a~lv~~ 61 (101)
-+.+.|..+-.++..||.++..|..++..
T Consensus 14 ~L~~~v~~lk~la~~ig~El~~Qn~~Ld~ 42 (66)
T 1n7s_D 14 QVSGIIGNLRHMALDMGNEIDTQNRQIDR 42 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999887654
No 12
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=42.19 E-value=42 Score=20.34 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=23.7
Q ss_pred HhhchhHHHHHHHhhHhhHHHHHHHHHH
Q psy17501 33 IVAGPLASYIALSNKIGGDVATHAKLVS 60 (101)
Q Consensus 33 li~~~l~~fv~lS~~IGg~V~e~a~lv~ 60 (101)
-|.+.|..+-.++..||.+|.+|..++.
T Consensus 23 ~L~~~v~~LK~~a~~Ig~El~~Qn~lLd 50 (82)
T 2nps_D 23 LVSGSIGVLKNMSQRIGGELEEQAVMLE 50 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4678889999999999999999987765
No 13
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=40.22 E-value=56 Score=21.24 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=45.1
Q ss_pred hHHHHHHHhhchhHHHHHHHhhHhhHHHHH-----HHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHhhHHHH
Q psy17501 26 SVAAFSDIVAGPLASYIALSNKIGGDVATH-----AKLVSEAFQAQQQFLTVASQSKDPGQSDKMRLLQPTSD 93 (101)
Q Consensus 26 sV~afDeli~~~l~~fv~lS~~IGg~V~e~-----a~lv~~aF~~qR~fL~~As~~kKP~~~~~~~lLkPls~ 93 (101)
-|..|..++......|-+++++++..|.+. .....+|.++-+.+=.-+.....|.. |-++|.-|-+
T Consensus 5 Pv~DFk~ll~~~~~~~~~A~~qm~~vI~~Ll~~s~~~~y~ka~ecl~~~R~~~i~~~ep~~--yN~Fl~~Lk~ 75 (120)
T 1q2z_A 5 PAENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQR--FNNFLKALQE 75 (120)
T ss_dssp HHHHHHHHTSSSCCTTTHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHH
T ss_pred hHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhccChHH--HHHHHHHHHH
Confidence 478888888776566777788877777776 34777888887777777777777743 3334444433
No 14
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=38.96 E-value=91 Score=21.28 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=50.9
Q ss_pred ccchhHHHHHHHhhchhHHHHHHHhhHhhHHHHHH-----HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHhhHHHH
Q psy17501 22 HLSMSVAAFSDIVAGPLASYIALSNKIGGDVATHA-----KLVSEAFQAQQQFLTVASQSKDPGQSDKMRLLQPTSD 93 (101)
Q Consensus 22 ~~p~sV~afDeli~~~l~~fv~lS~~IGg~V~e~a-----~lv~~aF~~qR~fL~~As~~kKP~~~~~~~lLkPls~ 93 (101)
+.-.-|..|..++......|-+++++++..|.+.- ....+|.++-+.+=.-+.....|.. |-++|.-|-+
T Consensus 32 g~~nPv~DFk~lL~~~~~~~~~A~~qM~~vI~~Ll~~s~~~~y~KA~ecL~~lR~~~i~~~ep~~--yN~Fl~~LK~ 106 (152)
T 1rw2_A 32 GSVNPAENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQR--FNNFLKALQE 106 (152)
T ss_dssp SSSCTTHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHTCSHH--HHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccChHH--HHHHHHHHHH
Confidence 44446899999998876678889999888888874 3777888888887777777778744 3334444433
No 15
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.65 E-value=37 Score=22.17 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=30.3
Q ss_pred HHHHHHHhhchhHHHHHHHhhHhhHHHHHHHHHHHHHH
Q psy17501 27 VAAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQ 64 (101)
Q Consensus 27 V~afDeli~~~l~~fv~lS~~IGg~V~e~a~lv~~aF~ 64 (101)
-.+|++++..+...+......+.+ -...-+++.++|-
T Consensus 22 ~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l 58 (194)
T 1or7_A 22 QKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFI 58 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHH
Confidence 368999999999998888888887 6677778888876
No 16
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.09 E-value=82 Score=18.42 Aligned_cols=46 Identities=11% Similarity=-0.038 Sum_probs=38.2
Q ss_pred HHHhhchhHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17501 31 SDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQAQQQFLTVASQS 76 (101)
Q Consensus 31 Deli~~~l~~fv~lS~~IGg~V~e~a~lv~~aF~~qR~fL~~As~~ 76 (101)
-..+..++...++...+|+..+..-..|-..|+...+.==.++.++
T Consensus 17 ~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 17 VGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567789999999999999999999999999988877665555554
No 17
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=26.69 E-value=73 Score=22.93 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHHHHHhhchhHHHHHHHhhHhhHHHHHHHHHHHHHH
Q psy17501 28 AAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQ 64 (101)
Q Consensus 28 ~afDeli~~~l~~fv~lS~~IGg~V~e~a~lv~~aF~ 64 (101)
.+|++++..+-..+...+..+-++-...-++++++|-
T Consensus 21 ~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl 57 (286)
T 3n0r_A 21 MHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALE 57 (286)
T ss_dssp CCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHH
Confidence 3699999999999999999999988888899998865
No 18
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=25.57 E-value=43 Score=24.15 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=30.3
Q ss_pred HHHHHHhhchhHHHHHHHhhHhhHHHHHHHHHHHHHH
Q psy17501 28 AAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQ 64 (101)
Q Consensus 28 ~afDeli~~~l~~fv~lS~~IGg~V~e~a~lv~~aF~ 64 (101)
.+|++++..+.......+..+-+.-.+.-++++.+|-
T Consensus 110 ~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi 146 (245)
T 3ugo_A 110 AARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQ 146 (245)
T ss_dssp HHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 6899999999999999998887765666777887776
No 19
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.24 E-value=1.1e+02 Score=18.55 Aligned_cols=38 Identities=11% Similarity=0.287 Sum_probs=28.6
Q ss_pred hhHHHHHHH---hhchhHHHHHHHhhHhhHHHHHHHHHHHH
Q psy17501 25 MSVAAFSDI---VAGPLASYIALSNKIGGDVATHAKLVSEA 62 (101)
Q Consensus 25 ~sV~afDel---i~~~l~~fv~lS~~IGg~V~e~a~lv~~a 62 (101)
..-...|+- |.+.|..+-.++..||.++..|-.++...
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i 62 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRI 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455543 56788888999999999999998877654
No 20
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=25.18 E-value=1.5e+02 Score=19.58 Aligned_cols=58 Identities=9% Similarity=0.100 Sum_probs=38.6
Q ss_pred HHHHHHhhchhHHHHHHHhhHh---hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-hHHHHHhh
Q psy17501 28 AAFSDIVAGPLASYIALSNKIG---GDVATHAKLVSEAFQAQQQFLTVASQSKDPGQ-SDKMRLLQ 89 (101)
Q Consensus 28 ~afDeli~~~l~~fv~lS~~IG---g~V~e~a~lv~~aF~~qR~fL~~As~~kKP~~-~~~~~lLk 89 (101)
.+|++++..+.......+..+. ++-.+.-+++..+|-. ++... ..=.|+. ..|...|.
T Consensus 12 ~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~---l~~~~-~~~~~~~~~~f~~~l~ 73 (239)
T 1rp3_A 12 IEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIG---LIKAV-DNLSTENPKRAEAYIK 73 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHH---HHHHH-HTCCCCCTHHHHHHHH
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH---HHHHH-HHcCcccCCCHHHHHH
Confidence 3799999999999999998886 4555667788888763 33333 3334432 34555443
No 21
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=21.87 E-value=1.9e+02 Score=19.39 Aligned_cols=70 Identities=9% Similarity=0.039 Sum_probs=51.9
Q ss_pred HHHHHHhhchhHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-hHHHHHhhHHHHHHHHH
Q psy17501 28 AAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQAQQQFLTVASQSKDPGQ-SDKMRLLQPTSDKIAAI 98 (101)
Q Consensus 28 ~afDeli~~~l~~fv~lS~~IGg~V~e~a~lv~~aF~~qR~fL~~As~~kKP~~-~~~~~lLkPls~~I~~i 98 (101)
....+.|.....=+.+|...++.+ ++.+.-+...+.....-|..|...+.+.. .+...+|.+|.+.-.+|
T Consensus 50 ~~k~~~i~KA~~Ii~eL~~sLd~e-geiA~nL~~LY~y~~~~L~~Ani~~D~~~ldev~~ll~~LreaW~~i 120 (145)
T 1vh6_A 50 ERKNENLIKAQNIIQELNFTLNRN-IELSASMGAMYDYMYRRLVQANIKNDTGMLAEVEGYVTDFRDAWKQA 120 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556677777777 88888899999999999999999887744 45778888888876655
No 22
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.63 E-value=57 Score=19.94 Aligned_cols=25 Identities=8% Similarity=0.384 Sum_probs=15.4
Q ss_pred HHHHHHHHHHH-hhcCCCCchHHHHH
Q psy17501 63 FQAQQQFLTVA-SQSKDPGQSDKMRL 87 (101)
Q Consensus 63 F~~qR~fL~~A-s~~kKP~~~~~~~l 87 (101)
|..|+.+|+.. ....+|+..++..|
T Consensus 13 ~k~ql~~Lk~yF~~n~~Ps~eei~~L 38 (71)
T 2da7_A 13 YKDHMSVLKAYYAMNMEPNSDELLKI 38 (71)
T ss_dssp STHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34556666665 67788877654443
Done!