RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17501
         (101 letters)



>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle,
          membrane protein; 1.40A {Dictyostelium discoideum}
          SCOP: a.192.1.1 PDB: 1tjf_A
          Length = 176

 Score = 84.3 bits (208), Expect = 3e-22
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 26 SVAAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQAQQQFLTVASQSKDPGQSDKM 85
          SV  F ++V   +  ++ALS K+  +V    + + +A  A++  +  ASQSK P Q   +
Sbjct: 1  SVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLL 60

Query: 86 RLLQPTSDKIAAI 98
           L++P ++  A +
Sbjct: 61 ELIKPLNNFAAEV 73


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 28/108 (25%)

Query: 2   KEEVEE-VTPLTASTPVTSPIHLSM--SVAAFSDIVAGPLASYIALSNKIGGDVATHAKL 58
           +E+V++ V    +  P    + +S+         +V+GP  S   L+  +       AK 
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL--VVSGPPQSLYGLNLTL-----RKAKA 398

Query: 59  VSEAFQAQQ-----------QFLTVASQSKDPGQSDKMRLLQPTSDKI 95
            S   Q++            +FL VAS    P  S    LL P SD I
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVAS----PFHSH---LLVPASDLI 439



 Score = 34.3 bits (78), Expect = 0.004
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 34/123 (27%)

Query: 1    MKEEVEEVTPLT--------ASTPVTSPIHLSMSVAAFSDI-----------VAG-PLAS 40
             KE  E  T  T        ++T  T P    M  AAF D+            AG  L  
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766

Query: 41   YIALSNKIGG--DVATHAKLVSEAFQAQQ--QFLTVASQSKDPGQSD-KMRLLQPTSDKI 95
            Y AL++ +     + +  ++V            + VA    + G+S+  M  + P   ++
Sbjct: 1767 YAALAS-LADVMSIESLVEVVF------YRGMTMQVAVPRDELGRSNYGMIAINP--GRV 1817

Query: 96   AAI 98
            AA 
Sbjct: 1818 AAS 1820



 Score = 25.4 bits (55), Expect = 5.0
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 15/57 (26%)

Query: 42 IALSNKIGGDVATHAKLVSEA--FQAQQ---QFL-TVASQSKDPGQSDKMRLLQPTS 92
          + LS+   G +  H  LV  A  F A Q   QF   +   ++     D     +PT+
Sbjct: 9  LTLSH---GSL-EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD-----EPTT 56



 Score = 25.0 bits (54), Expect = 5.8
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 16  PVTSPIH---LSMSVAAFSDIVAGPLASYIALSNKI-------GGDVATHAKLVSEA 62
           PV SP H   L  +    +  +     S+ A   +I       G D+   +  +SE 
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.24
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 16/63 (25%)

Query: 41  YIALSNKIGGDVATHAKLVSEAFQAQQQFLTVASQSKDPGQSDKMRLLQPTSDKIAAIHI 100
           Y+ L  K+  + A H  +V + +   + F             D   L+ P  D+    HI
Sbjct: 432 YLELKVKLENEYALHRSIV-DHYNIPKTF-------------DSDDLIPPYLDQYFYSHI 477

Query: 101 --H 101
             H
Sbjct: 478 GHH 480


>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA
          BIND protein; 2.30A {Tetrahymena thermophila}
          Length = 109

 Score = 25.6 bits (55), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 58 LVSEAFQAQQQFLTVASQSKDPGQSDKMRLLQ 89
          L+SE  +  +Q+L+V +Q  D   SDK   L+
Sbjct: 3  LISEVLKTSKQYLSVLAQVVDIQSSDKNIRLK 34


>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity
           factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A
           {Tetrahymena thermophila}
          Length = 213

 Score = 25.9 bits (56), Expect = 2.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 55  HAKLVSEAFQAQQQFLTVASQSKDPGQSDK 84
              L+SE  +  +Q+L+V +Q  D   SDK
Sbjct: 118 STLLISEVLKTSKQYLSVLAQVVDIQSSDK 147


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.7 bits (55), Expect = 2.4
 Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 7/30 (23%)

Query: 4  EVEEVTPLTAS----TPVTSPIHLSMSVAA 29
          E + +  L AS       ++P   ++++ A
Sbjct: 18 EKQALKKLQASLKLYADDSAP---ALAIKA 44


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.124    0.332 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,393,177
Number of extensions: 67594
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 10
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)