RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17501
         (101 letters)



>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase
          associated protein, CAP {Dictyostelium discoideum
          [TaxId: 44689]}
          Length = 176

 Score = 88.6 bits (220), Expect = 2e-24
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 26 SVAAFSDIVAGPLASYIALSNKIGGDVATHAKLVSEAFQAQQQFLTVASQSKDPGQSDKM 85
          SV  F ++V   +  ++ALS K+  +V    + + +A  A++  +  ASQSK P Q   +
Sbjct: 1  SVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLL 60

Query: 86 RLLQPTSDKIAAI 98
           L++P ++  A +
Sbjct: 61 ELIKPLNNFAAEV 73


>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens
           [TaxId: 1502]}
          Length = 471

 Score = 24.0 bits (52), Expect = 4.1
 Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 48  IGGDVATHAKLVSEAFQAQQQFLTVASQ--SKDPG 80
           +GGD   H K+V++ F   ++ +   +   +K+P 
Sbjct: 294 LGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPA 328


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.124    0.332 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 313,085
Number of extensions: 10519
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)