BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17502
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 124/235 (52%), Gaps = 22/235 (9%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNA 74
V+ L +NFD+ V D V ++E+YAPWCGHC+ F EY K+A LK + V ++A
Sbjct: 17 VLVLNDANFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA 75
Query: 75 DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQXXXXXXXXXXX 134
L+S V+G+PT+KI K Y+G+RT + I+ E +
Sbjct: 76 TSASVLASRFDVSGYPTIKILK-KGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLV 134
Query: 135 XXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKL 191
LT NF+++V N DI LVEF+APWCGHCK L P +EKAA EL + + L
Sbjct: 135 --------LTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPL 185
Query: 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
VDAT +A F++ GYPT+K F G +YNG R IV + + +
Sbjct: 186 AKVDATAETDLAKRFDVSGYPTLKIFRKGR-----PYDYNGPREKYGIVDYMIEQ 235
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 24/224 (10%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLGAVDATVH 199
L D+NF+ V + D + L+EF+APWCGHCK P +EK A+ L+ K + + +DAT
Sbjct: 20 LNDANFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA 78
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN-VPPPEIKQ 258
+A F++ GYPTIK G A +Y G RT ++IV + PPPE+
Sbjct: 79 SVLASRFDVSGYPTIKILKKGQ-----AVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTL 133
Query: 259 IVSEATFKEACEDHPLCIVAVL-PHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEA 317
++++ F E D + +V P C+ Y + ++L + + +A
Sbjct: 134 VLTKENFDEVVNDADIILVEFYAPWCGHCK-KLAPEYEKAAKELSKRSPPIPLAKV--DA 190
Query: 318 VAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINE 361
A+ DL ++ GYP + + + P+ Y+G E
Sbjct: 191 TAETDLAKRFDVS--GYPTLKIFRKGR--------PYDYNGPRE 224
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 395 GELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
G L E+D+++ + + L ++ NFD+ V D V ++E+YAPWCGHC+ F EY K+A
Sbjct: 1 GPLGSEDDLEVKEENGV-LVLNDANFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIA 58
Query: 455 TALK 458
LK
Sbjct: 59 NILK 62
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
NFD+ V+ ++ +VE+YAPWCGHC+ EY K A L
Sbjct: 139 NFDE-VVNDADIILVEFYAPWCGHCKKLAPEYEKAAKEL 176
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
LY S DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ E+ K ATALK VVKVG
Sbjct: 12 LYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVG 71
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIR 122
AVNAD+ +SL +GV GFPT+KIF ++K P YQG RT +AI+D AL A+R
Sbjct: 72 AVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR 124
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
ELT SNF + V SD +WLVEF+APWCGHC+ L P W+KAA+ L+ VK+GAV+A HQ
Sbjct: 21 ELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQS 80
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245
+ G++ ++G+PTIK F D Y GGRT + IV AL+
Sbjct: 81 LGGQYGVQGFPTIKIFGANKNKPED---YQGGRTGEAIVDAALS 121
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
NF+ +VI+SD +W+VE+YAPWCGHCQ E+ K ATALK
Sbjct: 26 NFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK 65
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 88/119 (73%), Gaps = 8/119 (6%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL----EGKVKLGAVDAT 197
ELTD +F+K V +S+D+W+VEF+APWCGHCKNLEP W AASE+ +GKVKL AVDAT
Sbjct: 11 ELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT 70
Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEI 256
V+Q +A + IRG+PTIK F G +Y+GGRT DIV+ AL+ +++N PPPE+
Sbjct: 71 VNQVLASRYGIRGFPTIKIFQKGESPV----DYDGGRTRSDIVSRALDLFSDNAPPPEL 125
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 72/110 (65%), Gaps = 4/110 (3%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL----KGVVKV 69
S DVI+LT +FD V+ S++VW+VE+YAPWCGHC++ + E+ A+ + KG VK+
Sbjct: 5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKL 64
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE 119
AV+A + L+S +G+ GFPT+KIF +P Y G RT I+ AL+
Sbjct: 65 AAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALD 114
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+FD V+ S++VW+VE+YAPWCGHC++ + E+ A+ +K
Sbjct: 16 SFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVK 55
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 118/466 (25%), Positives = 190/466 (40%), Gaps = 91/466 (19%)
Query: 16 SDVIKLTTSNFDDKV--IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
SDV++LT NF+ ++ S + +VE++APWCGH + EY AT LKG+V + V+
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQXXXXXXXXXX 133
+ + +GV+G+PT+KIF D Y G RTAD I+
Sbjct: 61 CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIV--------------SHLKK 106
Query: 134 XXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWE--KAASELEGKVKL 191
T+ F+K + + D +V FF E H E KAAS L +
Sbjct: 107 QAGPASVPLRTEEEFKKFISDK-DASIVGFFDDSFS-----EAHSEFLKAASNLRDNYRF 160
Query: 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251
+ + + E++ G I F P + + V + K T
Sbjct: 161 AHTNV---ESLVNEYDDNGEGII-LFRPSHLT---------NKFEDKTVAYTEQKMTSG- 206
Query: 252 PPPEIKQIVSEATF---KEACEDHPLCI----VAVLPHILDCQSSC------RNNYLEIL 298
+IK+ + E F ED+ I + + + +D + + RN + +
Sbjct: 207 ---KIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVA 263
Query: 299 QKLGDKYKQKVWGWIWSEAVAQPDLENV-LEIGGFGYPAMAVLNAKKMKYSLLKGPFSYD 357
+K D K+ + S +L + LE P +A+ AK K+ + +
Sbjct: 264 KKFLDA-GHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQE------ 316
Query: 358 GINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDG------KDGELPQEEDIDLSDVDLE 411
EF RD G AL + Q D +DG K +P+ D + V E
Sbjct: 317 ---EFSRD------------GKALERFLQ-DYFDGNLKRYLKSEPIPESNDGPVKVVVAE 360
Query: 412 DLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
NFD+ V ++ ++E+YAPWCGHC++ + +Y +L L
Sbjct: 361 -------NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL 399
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKLGAVDATVHQRIAG 204
NF+++V N + L+EF+APWCGHCKNLEP +++ +L + + + +DAT + +
Sbjct: 361 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND-VPS 419
Query: 205 EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQ 258
+ +RG+PTI +FSP ++ + ++Y GGR D +++ + T PP I++
Sbjct: 420 PYEVRGFPTI-YFSPANKKL-NPKKYEGGRELSDFISYLQREATN---PPVIQE 468
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-----VVKVGAVNAD 75
+ NFD+ V ++ ++E+YAPWCGHC++ + +Y +L L + K+ A D
Sbjct: 357 VVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND 416
Query: 76 EEKSLSSSHGVTGFPTVKIFS---DKRNPTPYQGAR 108
+ S + V GFPT+ FS K NP Y+G R
Sbjct: 417 ----VPSPYEVRGFPTI-YFSPANKKLNPKKYEGGR 447
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 409 DLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
D+ +L D F S + +VE++APWCGH + EY AT LK
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK 51
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
S V L NF E W+V+++APW ++ E K +T L G +KVG ++
Sbjct: 440 SHVTTLGPQNFP---ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCT 496
Query: 76 EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQXXXXXXXXXXXX 135
+ L + + + +PT +F ++ + Y+G +A+ I++ +E +R
Sbjct: 497 IHEGLCNMYNIQAYPTTVVF-NQSSIHEYEGHHSAEQILEF-IEDLRNPSVV-------- 546
Query: 136 XXXXXXELTDSNFEKLV--YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
LT S F +LV D++W+V+F++PW + L P W++ A L G + +G+
Sbjct: 547 ------SLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGS 600
Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWAL 244
VD + + N++ YP I+F+ S A YNG R + + +W L
Sbjct: 601 VDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGL 652
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 22/207 (10%)
Query: 18 VIKLTTSNFDD--KVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
V+ LT S F++ K K DEVW+V++Y+PW Q E+ ++A L G++ VG+V+
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCG 604
Query: 76 EEKSLSSSHGVTGFPTVKIFSDKRNPT----PYQG-ARTADAIIDVALEAIRQXXXXXXX 130
+ S + V +P ++ + K + Y G R A ++ L + Q
Sbjct: 605 QYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASI---- 660
Query: 131 XXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVK 190
+LT F + V W+V+F+APW G +N P +E A ++GKV+
Sbjct: 661 -----------DLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVR 709
Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFF 217
G VD + + + I+ YP++K +
Sbjct: 710 AGKVDCQAYPQTCQKAGIKAYPSVKLY 736
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 22/214 (10%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
+Y ++I L FD + S E+W V +Y+P H + + A + G++++G
Sbjct: 111 IYDDDPEIITLERREFD-AAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIG 169
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQXXXXXXX 130
AVN +++ L GV +P++ IF Y G R+ ++++ A++ +R
Sbjct: 170 AVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRS------- 222
Query: 131 XXXXXXXXXXXELTDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG 187
EL+ NF + + + WL+ F + C + + + L+G
Sbjct: 223 --------TVTELSTGNFVNAIETAFAAGVGWLITFCSK-GEDCLTSQTRL-RLSGMLDG 272
Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGS 221
V +G VD + + T +F PG+
Sbjct: 273 LVNVGWVDCDAQDSLCKSLDTTA-STTAYFPPGA 305
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
I LT F++KV++ W+V++YAPW G Q+F E+ LA +KG V+ G V+
Sbjct: 660 IDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYP 719
Query: 79 SLSSSHGVTGFPTVKIFSDKRNPTPY-------QGARTADAIIDVALEAIR 122
G+ +P+VK++ +R + A+T A+I LE ++
Sbjct: 720 QTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQ 770
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 420 FDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
F++KV++ W+V++YAPW G Q+F E+ LA +K
Sbjct: 667 FNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIK 705
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 404 DLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
DL + + L FN K K DEVW+V++Y+PW Q E+ ++A L
Sbjct: 539 DLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTL 592
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Query: 142 ELTDSNFEKLVYN--SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
ELTD NFE + + S + LVEFFAPWCGHCK L P +E AA+ L+G V L VD T +
Sbjct: 5 ELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTAN 64
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVT 241
++ + GYPT+K F R +A Y+G RT+ IV+
Sbjct: 65 TNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVS 102
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 16 SDVIKLTTSNFDDKV--IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
SDV++LT NF+ ++ S + +VE++APWCGHC+ EY AT LKG+V + V+
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII 114
+ + +GV+G+PT+KIF D Y G RTAD I+
Sbjct: 61 CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIV 101
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 409 DLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
D+ +L D F S + +VE++APWCGHC+ EY AT LK
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLK 51
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 67/109 (61%), Gaps = 7/109 (6%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVH 199
L SNF + + + LVEF+APWCGHCK L P + KAA +L+ +++L VDAT
Sbjct: 12 LRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE 70
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT 248
+A ++ +RGYPTIKFF G ++ +EY GR + DIV W L K T
Sbjct: 71 SDLAQQYGVRGYPTIKFFRNGDTASP--KEYTAGREADDIVNW-LKKRT 116
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNA 74
V+ L SNF + + + + +VE+YAPWCGHC++ EY K A LK +++ V+A
Sbjct: 9 VLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA 67
Query: 75 DEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIID 115
EE L+ +GV G+PT+K F D +P Y R AD I++
Sbjct: 68 TEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVN 110
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 398 PQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
P+EED L L K F + + + + +VE+YAPWCGHC++ EY K A L
Sbjct: 3 PEEEDHVLV------LRKSNFA---EALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKL 53
Query: 458 KV 459
K
Sbjct: 54 KA 55
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLGAVDATVH 199
LT NF+ +V N+D I LVEF+APWCGHCK L P +EKAA EL + + L VDAT
Sbjct: 12 LTKDNFDDVVNNAD-IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
+A F++ GYPT+K F G +YNG R IV + + +
Sbjct: 71 TDLAKRFDVSGYPTLKIFRKGR-----PFDYNGPREKYGIVDYMIEQ 112
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGAVNA 74
+ LT NFDD V+ + ++ +VE+YAPWCGHC+ EY K A L + + V+A
Sbjct: 9 TLSLTKDNFDD-VVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 67
Query: 75 DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE 119
E+ L+ V+G+PT+KIF R P Y G R I+D +E
Sbjct: 68 TEQTDLAKRFDVSGYPTLKIFRKGR-PFDYNGPREKYGIVDYMIE 111
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
NFDD V+ + ++ +VE+YAPWCGHC+ EY K A L
Sbjct: 16 NFDD-VVNNADIILVEFYAPWCGHCKKLAPEYEKAAKEL 53
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 10/118 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLGAVDATVH 199
L D NF+ V + D + L+EF+APWCGHCK P +EK AS L+ + + +DAT
Sbjct: 22 LNDGNFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA 80
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN-VPPPEI 256
+A +F++ GYPTIK G A +Y+G RT ++IV + PPPE+
Sbjct: 81 SMLASKFDVSGYPTIKILKKGQ-----AVDYDGSRTQEEIVAKVREVSQPDWTPPPEV 133
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEE 77
L NFD+ V D V ++E+YAPWCGHC+ F EY K+A+ LK + V ++A
Sbjct: 22 LNDGNFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA 80
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII 114
L+S V+G+PT+KI K Y G+RT + I+
Sbjct: 81 SMLASKFDVSGYPTIKILK-KGQAVDYDGSRTQEEIV 116
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
NFD+ V D V ++E+YAPWCGHC+ F EY K+A+ LK
Sbjct: 26 NFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIASTLK 64
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA-TALKGVVKVGA 71
P S V+KL T +F++ I+S ++ + E++APWCGHC++ EY+K A T ++ + +
Sbjct: 11 PEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQ 69
Query: 72 VNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIIDVALE 119
++ E + L H + GFP++KIF SD N Y+G RTA+AI+ ++
Sbjct: 70 IDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIK 119
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASEL-EGKVKLGAVDATVHQRIAGEFNIRGYPT 213
S D+ L EFFAPWCGHCKN+ P + KAA L E + L +D T +Q + E NI G+P+
Sbjct: 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS 89
Query: 214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
+K F + +++ +Y G RT++ IV + + +
Sbjct: 90 LKIFK--NSDVNNSIDYEGPRTAEAIVQFMIKQ 120
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA-TALKGVVKVGAVNA 74
S V +L N D+ V + +V YYAPWCGHC+ Y +LA T V
Sbjct: 358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 417
Query: 75 DEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIIDVALE 119
D ++ + G+PT+ ++ K YQG+R+ D++ D E
Sbjct: 418 DHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE 464
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAA---SELEGKVKLGAVDATV 198
+L N +++V + LV ++APWCGHCK L P +++ A + V + +D T
Sbjct: 362 QLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT- 420
Query: 199 HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT 235
+ G I GYPTI + G +S S Y G R+
Sbjct: 421 ENDVRGVV-IEGYPTIVLYPGGKKSESVV--YQGSRS 454
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 399 QEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
Q+E + D + L D FN + I+S ++ + E++APWCGHC++ EY+K A L
Sbjct: 5 QQEAVAPEDSAVVKLATDSFN---EYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL 60
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
N D+ V + +V YYAPWCGHC+ Y +LA
Sbjct: 367 NHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELA 402
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 15/120 (12%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV--DATVH 199
ELT +F+K ++N++ LVEF+APWCGHCK L + KAA L+G V++ AV D +
Sbjct: 21 ELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN 80
Query: 200 QRIAGEFNIRGYPTIKFFSP-------------GSRSASDAQEYNGGRTSQDIVTWALNK 246
+ + ++++ G+PT+ F P S SA + Y+G RT IV ++L++
Sbjct: 81 KALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR 140
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 19/131 (14%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
Y S + +LT +FD + ++ +VE+YAPWCGHC+ + K A L GVV+V
Sbjct: 12 FYDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVA 71
Query: 71 AVNAD--EEKSLSSSHGVTGFPTVKIFS----DKRNPTP-------------YQGARTAD 111
AVN D + K+L + + V GFPT+ +F D P Y GART
Sbjct: 72 AVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLA 131
Query: 112 AIIDVALEAIR 122
I+D +L IR
Sbjct: 132 PIVDFSLSRIR 142
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
+FD + ++ +VE+YAPWCGHC+ + K A L
Sbjct: 26 SFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL 64
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 64/98 (65%), Gaps = 5/98 (5%)
Query: 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKLGAVDATVHQRIAG 204
NF+++V N + L+EF+APWCGHCKNLEP +++ +L + + + +DAT + +
Sbjct: 36 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND-VPS 94
Query: 205 EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
+ +RG+PTI +FSP ++ + ++Y GGR D +++
Sbjct: 95 PYEVRGFPTI-YFSPANKKL-NPKKYEGGRELSDFISY 130
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-----VVKVGAVNAD 75
+ NFD+ V ++ ++E+YAPWCGHC++ + +Y +L L + K+ A D
Sbjct: 32 VVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND 91
Query: 76 EEKSLSSSHGVTGFPTVKIFS---DKRNPTPYQGARTADAII 114
+ S + V GFPT+ FS K NP Y+G R I
Sbjct: 92 ----VPSPYEVRGFPTI-YFSPANKKLNPKKYEGGRELSDFI 128
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
NFD+ V ++ ++E+YAPWCGHC++ + +Y +L L
Sbjct: 36 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL 74
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK-AASELEG--KVKLGAVDATVH 199
LT++NF+ + ++ I ++F+APWCGHCK L P WE+ + E G VK+ VD T
Sbjct: 12 LTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE 69
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
+ I ++++RGYPT+ F R E++GGR + + L++
Sbjct: 70 RNICSKYSVRGYPTLLLF----RGGKKVSEHSGGRDLDSLHRFVLSQ 112
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT----ALKGVVKV 69
S V+ LT +NFDD + ++ + +++YAPWCGHC++ + +L+ L GV K+
Sbjct: 5 SSGTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGV-KI 61
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
V+ E+++ S + V G+PT+ +F + + + G R D++
Sbjct: 62 AEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 105
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 413 LPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
L E NFDD + ++ + +++YAPWCGHC++ + +L+
Sbjct: 10 LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELS 49
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK-AASELEG--KVKLGAVDATVH 199
LT++NF+ + ++ I ++F+APWCGHCK L P WE+ + E G VK+ VD T
Sbjct: 5 LTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE 62
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
+ I ++++RGYPT+ F G + E++GGR + + L++
Sbjct: 63 RNICSKYSVRGYPTLLLFRGGKK----VSEHSGGRDLDSLHRFVLSQ 105
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 7/100 (7%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT----ALKGVVKVGAVN 73
V+ LT +NFDD + ++ + +++YAPWCGHC++ + +L+ L GV K+ V+
Sbjct: 2 VLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGV-KIAEVD 58
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
E+++ S + V G+PT+ +F + + + G R D++
Sbjct: 59 CTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 98
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 413 LPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
L E NFDD + ++ + +++YAPWCGHC++ + +L+
Sbjct: 3 LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELS 42
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK-AASELEG--KVKLGAVDATVH 199
LT++NF+ + ++ I ++F+APWCGHCK L P WE+ + E G VK+ VD T
Sbjct: 10 LTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE 67
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
+ I ++++RGYPT+ F R E++GGR + + L++
Sbjct: 68 RNICSKYSVRGYPTLLLF----RGGKKVSEHSGGRDLDSLHRFVLSQ 110
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 61/105 (58%), Gaps = 7/105 (6%)
Query: 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT----ALKGVVK 68
P S V+ LT +NFDD + ++ + +++YAPWCGHC++ + +L+ L GV K
Sbjct: 2 PLGSTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGV-K 58
Query: 69 VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
+ V+ E+++ S + V G+PT+ +F + + + G R D++
Sbjct: 59 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 103
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 413 LPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
L E NFDD + ++ + +++YAPWCGHC++ + +L+
Sbjct: 8 LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELS 47
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
+Y ++I L FD + S E+W V +Y+P C HC + + A + G++++G
Sbjct: 92 IYDDDPEIITLERREFD-AAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIG 150
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIR 122
AVN +++ L GV +P++ IF Y G R+ ++++ A++ +R
Sbjct: 151 AVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR 202
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT 213
NS ++W V F++P C HC +L P W + A E++G +++GAV+ + + + YP+
Sbjct: 112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPS 171
Query: 214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251
+ F RS A +YNG R+ + +V +A+ V
Sbjct: 172 LFIF----RSGMAAVKYNGDRSKESLVAFAMQHVRSTV 205
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 407 DVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
D ++ L + EF D + S E+W V +Y+P C HC + + A
Sbjct: 96 DPEIITLERREF---DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFA 140
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
I LT F++KV++ W+V++YAPWCG CQ+F E+ LA +KG V+ G V+
Sbjct: 6 IDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP 65
Query: 79 SLSSSHGVTGFPTVKIFSDKR 99
G+ +P+VK++ +R
Sbjct: 66 QTCQKAGIKAYPSVKLYQYER 86
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
+LT F + V W+V+F+APWCG C+N P +E A ++GKV+ G VD + +
Sbjct: 7 DLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQ 66
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI 239
+ I+ YP++K + S +E R ++ I
Sbjct: 67 TCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTI 104
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
F++KV++ W+V++YAPWCG CQ+F E+ LA +K
Sbjct: 12 TFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK 51
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 10/101 (9%)
Query: 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK-----AASELEGKVKLGAVDATVHQR 201
N+ ++V + L+EF+APWCGHCK L P +E+ A SE + +V + VDAT +
Sbjct: 16 NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND- 74
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
+ E I+G+PTIK + G++ Y+G RT +D++ +
Sbjct: 75 VPDE--IQGFPTIKLYPAGAK--GQPVTYSGSRTVEDLIKF 111
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA-----TALKGVVK 68
S V + N+++ V+ + ++E+YAPWCGHC++ +Y +L + K V
Sbjct: 5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVV 64
Query: 69 VGAVNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIIDVALE 119
+ V+A + GFPT+K++ K P Y G+RT + +I E
Sbjct: 65 IAKVDATANDVPDE---IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
N+++ V+ + ++E+YAPWCGHC++ +Y +L
Sbjct: 16 NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELG 51
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 156 DDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI 214
DD+ LV+F+APWCG C+ + P ++ AA+ L G+V+L +D H +AG I+G P
Sbjct: 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAF 122
Query: 215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
F G A A G R + ++V + K
Sbjct: 123 ILFHKGRELARAA----GARPASELVGFVRGKL 151
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 16 SDVIKLTTSNFDDKVI----KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
+ +I + D ++ + D +V+++APWCG C+ ++ A L G V++
Sbjct: 42 AGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAK 101
Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII 114
++ +++ H + G P +F R GAR A ++
Sbjct: 102 IDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELV 144
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 426 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
+ D +V+++APWCG C+ ++ A L
Sbjct: 62 RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATL 93
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCGHCK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCGHC+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCGHC+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQR 201
+TD N+ +L+ + W++EF+APWC C+NL+P WE A E +V + VD T
Sbjct: 12 ITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG 68
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPP 253
++G F I PTI G + + Y G RT +D + + +K +++ P
Sbjct: 69 LSGRFIINALPTIYHCKDG-----EFRRYQGPRTKKDFINFISDKEWKSIEP 115
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAV 72
S +V +T N+ + +++ D W++E+YAPWC CQ+ + E+ A + + V + V
Sbjct: 5 SSGNVRVITDENWRE-LLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKV 61
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
+ E+ LS + PT+ D YQG RT I+
Sbjct: 62 DVTEQPGLSGRFIINALPTIYHCKDGEF-RRYQGPRTKKDFIN 103
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 431 WIVEYYAPWCGHCQSFKDEYMKLA 454
W++E+YAPWC CQ+ + E+ A
Sbjct: 25 WMIEFYAPWCPACQNLQPEWESFA 48
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +FE V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +F+ V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+F+ V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P E+ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC-------QSFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C + DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKL 58
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++ DS++++ V S+ +V+F+APWCG CK + P ++ A E GK+ + ++
Sbjct: 4 DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 202 IAGEFNIRGYPTIKFFSPGSRSAS 225
IA ++NIR PT+ FF G R S
Sbjct: 64 IATQYNIRSIPTVLFFKNGERKES 87
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%)
Query: 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
+V + S++ + V++S+ +V+++APWCG C+ +LA G + V +N DE
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 77 EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
+++ + + PTV F + GA + D
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTD 99
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++ DS++++ V S+ +V+F+APWCG CK + P ++ A E GK+ + ++
Sbjct: 3 DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 62
Query: 202 IAGEFNIRGYPTIKFFSPGSRSAS 225
IA ++NIR PT+ FF G R S
Sbjct: 63 IATQYNIRSIPTVLFFKNGERKES 86
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSS 83
S++ + V++S+ +V+++APWCG C+ +LA G + V +N DE +++
Sbjct: 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 84 HGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
+ + PTV F + GA + D
Sbjct: 67 YNIRSIPTVLFFKNGERKESIIGAVPKSTLTD 98
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
E+TD NFE+ V SD LV+F+APWCG C+ + P E+ A E EGKVK+ V+ +
Sbjct: 5 EVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN 64
Query: 202 IAGEFNIRGYPTIKFFSPGS 221
A ++ IR PT+ F G
Sbjct: 65 TAAQYGIRSIPTLLLFKNGQ 84
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 58/96 (60%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
VI++T NF+ +V+KSD+ +V+++APWCG C+ +LA +G VKV VN DE
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
+ ++ +G+ PT+ +F + + GA+ +A+
Sbjct: 63 PNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEAL 98
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 22/26 (84%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
NF+ +V+KSD+ +V+++APWCG C+
Sbjct: 10 NFEQEVLKSDKPVLVDFWAPWCGPCR 35
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQ 200
L NFE + ++ VEF+APWCGHCK L P W+K + + + +D+T ++
Sbjct: 254 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 313
Query: 201 RIAGEFNIRGYPTIKFF-SPGSRSASDAQEYNGGRT 235
A + +PT+KFF + R+ D YNG RT
Sbjct: 314 VEA--VKVHSFPTLKFFPASADRTVID---YNGERT 344
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
L NF+D + VE+YAPWCGHC+ + KL K + D +
Sbjct: 254 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 313
Query: 81 SSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAI 113
+ V FPT+K F S R Y G RT D
Sbjct: 314 VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGF 348
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
NF+D + VE+YAPWCGHC+ + KL K
Sbjct: 258 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYK 297
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKE 101
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+ +G+ G PT+ +F +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKN 83
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
+FD V+K+D +V+++A WCG C+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCK 36
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR 234
A ++ IRG PT+ F G +A+ + G+
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR 234
A ++ IRG PT+ F G +A+ + G+
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P + A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ +A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKL 58
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 68 APKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKE 102
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 65 PGTAPKYGIRGTPTLLLFKNGEVAATKVGALS 96
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 12 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 59
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQ 200
L NFE + ++ VEF+APWCGHCK L P W+K + + + +D+T ++
Sbjct: 12 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 71
Query: 201 RIAGEFNIRGYPTIKFF-SPGSRSASDAQEYNGGRT 235
A + +PT+KFF + R+ D YNG RT
Sbjct: 72 VEA--VKVHSFPTLKFFPASADRTVID---YNGERT 102
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
L NF+D + VE+YAPWCGHC+ + KL K + D +
Sbjct: 12 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 71
Query: 81 SSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAI 113
+ V FPT+K F S R Y G RT D
Sbjct: 72 VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGF 106
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
NF+D + VE+YAPWCGHC+ + KL K
Sbjct: 16 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYK 55
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 17 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 76
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 77 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 111
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAV 72
P +I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +
Sbjct: 9 PMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 68
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
N D+ + +G+ G PT+ +F + GA
Sbjct: 69 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 103
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 21 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 68
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKE 101
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+ +G+ G PT+ +F +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKN 83
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
+TD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I +T +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A + +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
+FD V+K+D +V+++A WCG C+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCK 36
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG C+ + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKL 58
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDAT--VHQRIAGEF 206
V S W VEFFA WCGH P W++ A++++ + L +D + + EF
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI---VTWALNKYTENVPP 253
NI G+PT++FF +++ S A G Q + + AL + + PP
Sbjct: 86 NIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPP 135
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VV 67
LY S + L + V+ S W VE++A WCGH +F + +LA +K +
Sbjct: 7 LYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPAL 66
Query: 68 KVGAVNADEE--KSLSSSHGVTGFPTVKIF 95
+ ++ EE ++ + GFPTV+ F
Sbjct: 67 NLAVLDCAEETNSAVCREFNIAGFPTVRFF 96
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 424 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
V+ S W VE++A WCGH +F + +LA +K
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVK 60
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LT+ +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 417 EFNFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
E +FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 9 EDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
L+DS+F+ V D ++ F WC CK ++P +E+ AS++EG ++ +DA ++
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKT 63
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245
E NIR P++ F G + ++G D+ W N
Sbjct: 64 MAELNIRTLPSLALFVDGMIR----EVFSGTMNKSDLRYWINN 102
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 41/77 (53%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
L+ S+F +V + + I+ + WC C+ K + ++A+ ++G ++ ++A++ +
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKT 63
Query: 81 SSSHGVTGFPTVKIFSD 97
+ + P++ +F D
Sbjct: 64 MAELNIRTLPSLALFVD 80
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IR PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRSIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++ DS++++ V S+ +V+F+APWCG K + P ++ A E GK+ + ++
Sbjct: 4 DVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 202 IAGEFNIRGYPTIKFFSPGSRSAS 225
IA ++NIR PT+ FF G R S
Sbjct: 64 IATQYNIRSIPTVLFFKNGERKES 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%)
Query: 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
+V + S++ + V++S+ +V+++APWCG + +LA G + V +N DE
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 77 EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
+++ + + PTV F + GA + D
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTD 99
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL--GAVDATVHQRIAG 204
F+ +V + L+EF+APWCGHCK LEP + + +G+ L +DAT +
Sbjct: 16 TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITND 75
Query: 205 EFNIRGYPTIKFFSPGSR 222
++ + G+PTI F G +
Sbjct: 76 QYKVEGFPTIYFAPSGDK 93
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 25 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV--VKVGAVNADEEKSLSS 82
FD V+ + ++E+YAPWCGHC+ + Y L KG + + ++A +
Sbjct: 16 TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITND 75
Query: 83 SHGVTGFPTVKIF--SDKRNPTPYQGA 107
+ V GFPT+ DK+NP ++G
Sbjct: 76 QYKVEGFPTIYFAPSGDKKNPIKFEGG 102
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
FD V+ + ++E+YAPWCGHC+ + Y L K
Sbjct: 16 TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYK 55
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDAT--VHQRIAGEF 206
V S W VEFFA WCGHC P W A +++ + L A+D + + +F
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 207 NIRGYPTIKFFSPGSRSASDAQEYNGG---RTSQDIVTWALNKYTENVPP 253
NI G+PT++FF + + S A G +T ++ + AL + + PP
Sbjct: 86 NIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPP 135
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 8 VHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-- 65
+ LY + L V+ S W VE++A WCGHC +F + LA +K
Sbjct: 4 MSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWR 63
Query: 66 -VVKVGAVNADEE--KSLSSSHGVTGFPTVKIF 95
+ + A++ EE ++ + GFPTV+ F
Sbjct: 64 PALYLAALDCAEETNSAVCRDFNIPGFPTVRFF 96
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 424 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVY 460
V+ S W VE++A WCGHC +F + LA +K +
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAW 62
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGH-CKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG 66
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 102
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGH-CQSFKDEYMKLATALKGVVKVGAVNADE 76
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63
Query: 77 EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
+ +G+ G PT+ +F + GA
Sbjct: 64 NPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 94
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGH 442
+FD V+K+D +V+++A WCG
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGR 34
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WC CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WC C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WC C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG K + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG + ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG + DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKL 58
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG CK + ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKL 58
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WCG K + P ++ A E +GK+ + ++ +
Sbjct: 27 LTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 86
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 87 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 121
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 14 SYSD-VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAV 72
S+SD +I LT +FD V+K+D +V+++A WCG + ++A +G + V +
Sbjct: 19 SHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKL 78
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
N D+ + +G+ G PT+ +F + GA
Sbjct: 79 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 113
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG + DEY T K+
Sbjct: 31 SFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKL 78
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ + +D LV+F+A WCG CK + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ RG PT+ F G +A+ + G+ +
Sbjct: 67 APKYIERGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD ++K+D +V+++A WCG C+ ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ + G PT+ +F + GA +
Sbjct: 64 PGTAPKYIERGIPTLLLFKNGEVAATKVGALS 95
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+FD ++K+D +V+++A WCG C+ DEY T K+
Sbjct: 11 SFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 58
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
+ D F+ +V S LV+F+APWCG C+ + P ++ A E + K+K ++ +
Sbjct: 6 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNV 65
Query: 203 AGEFNIRGYPTIKFFSPGSR 222
A E+ IR PTI F G +
Sbjct: 66 ASEYGIRSIPTIMVFKGGKK 85
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 25 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH 84
F + V++S +V+++APWCG C+ ++A K +K +N DE +++S +
Sbjct: 10 TFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEY 69
Query: 85 GVTGFPTVKIFSDKRNPTPYQGARTADAII 114
G+ PT+ +F + GA I+
Sbjct: 70 GIRSIPTIMVFKGGKKCETIIGAVPKATIV 99
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
F + V++S +V+++APWCG C+
Sbjct: 10 TFKNVVLESSVPVLVDFWAPWCGPCR 35
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 145 DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG 204
+ N E+ Y D +V+F+A WCG CK + P ++ A E +G++ + VD Q +AG
Sbjct: 27 EKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAG 86
Query: 205 EFNIRGYPTIKF 216
F IR P+I F
Sbjct: 87 AFGIRSIPSILF 98
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 18 VIKLTTSNFDDKVI---KSDEVW--------IVEYYAPWCGHCQSFKDEYMKLATALKGV 66
VI LT + F KV K+ E W IV++YA WCG C+ +LA G
Sbjct: 11 VIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ 70
Query: 67 VKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
+ + V+ ++E+ L+ + G+ P++ + P QGA
Sbjct: 71 IVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGA 111
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD +F+ V +D LV+F+A WC K + P ++ A E +GK+ + ++ +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+I LT +FD V+K+D +V+++A WC + ++A +G + V +N D+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGART 109
+ +G+ G PT+ +F + GA +
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 95
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 142 ELTDSNFEKL--VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL------EGKVKLGA 193
E+T + E + + N+ D+ LV F+A WC + L P +E+A+ + E +V
Sbjct: 6 EITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFAR 65
Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPP 253
VD H IA + I YPT+K F G +EY G R+ + + + + ++ P
Sbjct: 66 VDCDQHSDIAQRYRISKYPTLKLFRNGXXX---KREYRGQRSVKALADYIRQQKSD--PI 120
Query: 254 PEIKQIVSEATFKEA 268
EI+ + T +
Sbjct: 121 QEIRDLAEITTLDRS 135
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK------GV 66
P S++ L T N D+ ++ + +V +V +YA WC Q + + + +K
Sbjct: 2 PLGSEITSLDTENIDE-ILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQ 60
Query: 67 VKVGAVNADEEKSLSSSHGVTGFPTVKIFSD-KRNPTPYQGARTADAIID 115
V V+ D+ ++ + ++ +PT+K+F + Y+G R+ A+ D
Sbjct: 61 VVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALAD 110
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 55.5 bits (132), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
LV+FFAPWCG C+ + P E+ A + G++K+ V+ H +A + +R PT+ F
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 220 GSRSAS 225
G+ A+
Sbjct: 114 GAPVAT 119
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95
+V+++APWCG C+ +LA G +KV VN DE L++ +GV PT+ +F
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLF 111
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%)
Query: 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF 206
+F+ V NS+ +V+F A WCG CK L P EK ++ GKV + VD H +A E+
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEY 81
Query: 207 NIRGYPTI 214
+ PT+
Sbjct: 82 EVSAVPTV 89
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 25 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH 84
+F D+V+ S+ +V+++A WCG C+ K+ G V + V+ D+ L+ +
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEY 81
Query: 85 GVTGFPTV 92
V+ PTV
Sbjct: 82 EVSAVPTV 89
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
+D +F D+V+ S+ +V+++A WCG C+
Sbjct: 18 QDGPDFQDRVVNSETPVVVDFHAQWCGPCK 47
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LT+ NF++++ N + + LV+ +A WC C EP ++K A + +GK G ++ +Q+I
Sbjct: 9 LTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKI 67
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
A ++++ PT F G S G +D + +NKY
Sbjct: 68 ADKYSVLNIPTTLIFVNGQLVDSLV-----GAVDEDTLESTVNKY 107
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
LT NFD+ VI+++++ +V+ +A WC C ++ Y K+A KG G +N DE + +
Sbjct: 9 LTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKI 67
Query: 81 SSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
+ + V PT IF + + GA D +
Sbjct: 68 ADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTL 100
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 417 EFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
E NFD+ VI+++++ +V+ +A WC C ++ Y K+A K
Sbjct: 11 EENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK 51
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
+VI T D K+++ D +++++APWCG C+SF + + A G V+ VN +
Sbjct: 39 EVINATAETLD-KLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA 97
Query: 77 EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
E +LS+ + PT+ ++ + + GA
Sbjct: 98 EPALSTRFRIRSIPTIXLYRNGKXIDXLNGA 128
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 144 TDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
T +KL+ DD+ +++F+APWCG C++ P + + A+E GKV+ V+ +
Sbjct: 44 TAETLDKLL--QDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPAL 101
Query: 203 AGEFNIRGYPTIKFFSPG 220
+ F IR PTI + G
Sbjct: 102 STRFRIRSIPTIXLYRNG 119
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 422 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
DK+++ D +++++APWCG C+SF + + A
Sbjct: 49 DKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETA 81
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
TD +F S+ + L +F+APWCG CK + P E+ E+ K+K+ +D +Q A
Sbjct: 7 TDQSFS--AETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETA 64
Query: 204 GEFNIRGYPTIKFFSPG 220
G++ + PT+ G
Sbjct: 65 GKYGVMSIPTLLVLKDG 81
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
++K T +F + S+ V + +++APWCG C+ +L + +K+ ++ DE
Sbjct: 3 IVKATDQSFSAET--SEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
+ + +GV PT+ + D G + +A+
Sbjct: 61 QETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEAL 96
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
E+TD NF++ + + LV+F+A WC C+ + P E+ A E EGK+ + +D + +
Sbjct: 6 EVTDQNFDETL-GQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 64
Query: 202 IAGEFNIRGYPTIKFFSPGS 221
A + + PT+ F G
Sbjct: 65 TAXRYRVXSIPTVILFKDGQ 84
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
I++T NFD+ + + +V+++A WC C+ ++A +G + V ++ DE
Sbjct: 5 IEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 63
Query: 79 SLSSSHGVTGFPTVKIFSD 97
+ + V PTV +F D
Sbjct: 64 KTAXRYRVXSIPTVILFKD 82
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
E+TD NF++ + + LV+F+A WC C+ + P E+ A E EGK+ + +D + +
Sbjct: 5 EVTDQNFDETL-GQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 63
Query: 202 IAGEFNIRGYPTIKFFSPGS 221
A + + PT+ F G
Sbjct: 64 TAXRYRVXSIPTVILFKDGQ 83
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
I++T NFD+ + + +V+++A WC C+ ++A +G + V ++ DE
Sbjct: 4 IEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 62
Query: 79 SLSSSHGVTGFPTVKIFSD 97
+ + V PTV +F D
Sbjct: 63 KTAXRYRVXSIPTVILFKD 81
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGH--------------CKNLEPHWEKAASELEGK 188
LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK 67
Query: 189 VKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
+ + ++ + A ++ IRG PT+ F G +A+ + G+ +
Sbjct: 68 LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 116
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKL--------------ATAL 63
+I LT +FD V+K+D +V+++A WCG + D L A
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 64 KGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
+G + V +N D+ + +G+ G PT+ +F + GA
Sbjct: 65 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 108
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459
+FD V+K+D +V+++A WCG + D L K+
Sbjct: 12 SFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKM 52
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++TD++F+ V + + LV+F+A WCG CK + P E+ A++ EGK + +D +
Sbjct: 7 KVTDADFDSKVESG--VQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPS 64
Query: 202 IAGEFNIRGYPTIKFFSPG 220
A ++ + PT+ F G
Sbjct: 65 TAAKYEVMSIPTLIVFKDG 83
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
++K+T ++FD KV V +V+++A WCG C+ +LA +G + ++ DE
Sbjct: 5 IVKVTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDEN 62
Query: 78 KSLSSSHGVTGFPTVKIFSDKR 99
S ++ + V PT+ +F D +
Sbjct: 63 PSTAAKYEVMSIPTLIVFKDGQ 84
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++TD++F+ V + + LV+F+A WCG CK + P E+ A++ EGK + +D +
Sbjct: 8 KVTDADFDSKVESG--VQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPS 65
Query: 202 IAGEFNIRGYPTIKFFSPG 220
A ++ + PT+ F G
Sbjct: 66 TAAKYEVMSIPTLIVFKDG 84
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
S+ ++K+T ++FD KV V +V+++A WCG C+ +LA +G + ++
Sbjct: 2 SHMAIVKVTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLD 59
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKR 99
DE S ++ + V PT+ +F D +
Sbjct: 60 VDENPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 150 KLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNI 208
K V D + +++F+A WCG CK + P +EK + G KV VD +IA E I
Sbjct: 27 KQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGI 86
Query: 209 RGYPTIKFFSPGSR 222
R PT FF G +
Sbjct: 87 RAMPTFVFFKNGQK 100
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 24 SNFDD--KVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG--AVNADEEKS 79
S++D +V D+V +++++A WCG C+ + K++ G KVG V+ DE+
Sbjct: 21 SSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFYKVDVDEQSQ 79
Query: 80 LSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
++ G+ PT F + + GA
Sbjct: 80 IAQEVGIRAMPTFVFFKNGQKIDTVVGA 107
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
D+F +V D+V +++++A WCG C+ + K++
Sbjct: 24 DQFK---QVTGGDKVVVIDFWATWCGPCKMIGPVFEKIS 59
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++TD++F+ V + + LV+F+A WCG CK + P E+ A++ EGK + +D +
Sbjct: 8 KVTDADFDSKVESG--VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPS 65
Query: 202 IAGEFNIRGYPTIKFFSPG 220
A ++ + PT+ F G
Sbjct: 66 TAAKYEVMSIPTLIVFKDG 84
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
S+ ++K+T ++FD KV V +V+++A WCG C+ +LA +G + ++
Sbjct: 2 SHMAIVKVTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLD 59
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKR 99
DE S ++ + V PT+ +F D +
Sbjct: 60 VDENPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 144 TDSNFEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
T ++ EKL+ N + +V+FFA WCG C+N+ P E A E+ +V+ VD ++
Sbjct: 6 TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEA 64
Query: 203 AGEFNIRGYPTIKFFSPG 220
A ++++ PT F G
Sbjct: 65 AAKYSVTAMPTFVFIKDG 82
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
+V+++A WCG C++ + LA + V+ V+ D+ + ++ + VT PT D
Sbjct: 23 VVDFFAQWCGPCRNIAPKVEALAKEIPE-VEFAKVDVDQNEEAAAKYSVTAMPTFVFIKD 81
Query: 98 KRNPTPYQGA 107
+ + GA
Sbjct: 82 GKEVDRFSGA 91
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
+TD +FE+ V +D LV+F+A WCG C+ + P E A+E K+++ ++ +
Sbjct: 10 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT 69
Query: 203 AGEFNIRGYPTIKFFSPG 220
A ++ + PT+ + G
Sbjct: 70 AAKYGVMSIPTLNVYQGG 87
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
+T +F+ V+K+D+ +V+++A WCG C+ +A +++ +N DE
Sbjct: 10 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT 69
Query: 81 SSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII 114
++ +GV PT+ ++ GA+ AI+
Sbjct: 70 AAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIV 103
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSF 446
+F+ V+K+D+ +V+++A WCG C+
Sbjct: 14 SFEQDVLKNDKPVLVDFWAAWCGPCRQI 41
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
++DS+F++ V + + LV+F+A WCG CK + P + E GKV + V+ +
Sbjct: 7 VSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPET 66
Query: 203 AGEFNIRGYPTIKFFSPG 220
+ +R PT+ G
Sbjct: 67 PNAYQVRSIPTLMLVRDG 84
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
+ ++ S+FD V+K+ + +V+++A WCG C+ ++ G V V VN D+
Sbjct: 5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP 64
Query: 79 SLSSSHGVTGFPTVKIFSDKR 99
+++ V PT+ + D +
Sbjct: 65 ETPNAYQVRSIPTLMLVRDGK 85
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
+FD V+K+ + +V+++A WCG C+
Sbjct: 11 SFDQDVLKASGLVLVDFWAEWCGPCK 36
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
E D + + V +S +V F++P C +CK EP++E+ A E G ++ +
Sbjct: 10 EFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPW 69
Query: 202 IAGEFNIRGYPTIKFFSPG 220
A ++ ++G PT KFF G
Sbjct: 70 TAEKYGVQGTPTFKFFCHG 88
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
S +I+ + +V S + +V +Y+P C +C++ + + + A G +N
Sbjct: 6 SSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIA 65
Query: 76 EEKSLSSSHGVTGFPTVKIFSDKR 99
+ +GV G PT K F R
Sbjct: 66 TNPWTAEKYGVQGTPTFKFFCHGR 89
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++TD++F V +S+ LV+F+A WCG CK + P E+ A+E + + +D +
Sbjct: 11 KVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 70
Query: 202 IAGEFNIRGYPTIKFFSPG 220
A F + PT+ F G
Sbjct: 71 TARNFQVVSIPTLILFKDG 89
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
S IK+T ++F V+ S++ +V+++A WCG C+ ++AT + V ++ D
Sbjct: 7 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 66
Query: 76 EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII 114
+ + V PT+ +F D + GA+ A++
Sbjct: 67 TNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALL 105
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++TD++F V +S+ LV+F+A WCG CK + P E+ A+E + + +D +
Sbjct: 16 KVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 75
Query: 202 IAGEFNIRGYPTIKFFSPG 220
A F + PT+ F G
Sbjct: 76 TARNFQVVSIPTLILFKDG 94
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
S IK+T ++F V+ S++ +V+++A WCG C+ ++AT + V ++ D
Sbjct: 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 71
Query: 76 EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII 114
+ + V PT+ +F D + GA+ A++
Sbjct: 72 TNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALL 110
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 150 KLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIR 209
+L S + +++FFA WCG CK + P + +++ V + VD + IA E+NI
Sbjct: 14 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 73
Query: 210 GYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
PT F G + +E+ G +
Sbjct: 74 SMPTFVFLKNGVK----VEEFAGANAKR 97
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 24 SNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSS 82
++ D ++ K S ++ +++++A WCG C+ + ++L+T V V V+ DE + ++
Sbjct: 9 ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAM 68
Query: 83 SHGVTGFPTVKIFSDKRNPTPYQGA---RTADAI 113
+ ++ PT + + GA R D I
Sbjct: 69 EYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVI 102
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 415 KDEFNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
KD+ + D ++ K S ++ +++++A WCG C+ + ++L+T
Sbjct: 6 KDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELST 47
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 150 KLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIR 209
+L S + +++FFA WCG CK + P + +++ V + VD + IA E+NI
Sbjct: 19 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 78
Query: 210 GYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
PT F G + +E+ G +
Sbjct: 79 SMPTFVFLKNGVK----VEEFAGANAKR 102
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 24 SNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSS 82
++ D ++ K S ++ +++++A WCG C+ + ++L+T V V V+ DE + ++
Sbjct: 14 ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAM 73
Query: 83 SHGVTGFPTVKIFSDKRNPTPYQGART 109
+ ++ PT + + GA
Sbjct: 74 EYNISSMPTFVFLKNGVKVEEFAGANA 100
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 415 KDEFNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
KD+ + D ++ K S ++ +++++A WCG C+ + ++L+T
Sbjct: 11 KDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELST 52
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
TD +F S+ + L +F+APWCG K + P E+ E+ K+K+ +D +Q A
Sbjct: 7 TDQSFS--AETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETA 64
Query: 204 GEFNIRGYPTIKFFSPG 220
G++ + PT+ G
Sbjct: 65 GKYGVMSIPTLLVLKDG 81
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
++K T +F + S+ V + +++APWCG + +L + +K+ ++ DE
Sbjct: 3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+ + +GV PT+ + D
Sbjct: 61 QETAGKYGVMSIPTLLVLKD 80
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP 212
Y D +V+F+A WCG CK + P E+ + E GK+ + V+ +A +F I+G P
Sbjct: 48 YLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIP 107
Query: 213 TIKF 216
TI F
Sbjct: 108 TIWF 111
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 16 SDVIKLTTSNFDDKVIK-----------SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 64
S I LT + F K+ D+ IV++YA WCG C+ +L+
Sbjct: 22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA 81
Query: 65 GVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
G + + VN D+E L+ G+ G PT+ K P GA + + +
Sbjct: 82 GKIYIYKVNVDKEPELARDFGIQGIPTIWFVPMKGEPQVNMGALSKEQL 130
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
TD +F S+ + L +F+APWCG K + P E+ E+ K+K+ +D +Q A
Sbjct: 7 TDQSFS--AETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETA 64
Query: 204 GEFNIRGYPTIKFFSPG 220
G++ + PT+ G
Sbjct: 65 GKYGVMSIPTLLVLKDG 81
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
++K T +F + S+ V + +++APWCG + +L + +K+ ++ DE
Sbjct: 3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+ + +GV PT+ + D
Sbjct: 61 QETAGKYGVMSIPTLLVLKD 80
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG CK ++P + + SE V VD Q +A ++ I
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDAQDVAPKYGI 71
Query: 209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
RG PT+ F G +A+ + G+ +
Sbjct: 72 RGIPTLLLFKNGEVAATKVGALSKGQLKE 100
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG C+ K + L+ V+ + V+ D+ + ++ +G+ G PT+
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDAQDVAPKYGIRGIPTLL 78
Query: 94 IFSDKRNPTPYQGART 109
+F + GA +
Sbjct: 79 LFKNGEVAATKVGALS 94
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD+NF++ + D LV+F+A WCG C+ + P E+ A KV + ++ +
Sbjct: 5 LTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 203 AGEFNIRGYPTIKFFSPG 220
+F I PT+ F G
Sbjct: 64 TSQFGIMSIPTLILFKGG 81
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
+ LT +NF + I+ D+ +V+++A WCG C+ + A A V V +N DE
Sbjct: 3 MTLTDANFQ-QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 79 SLSSSHGVTGFPTVKIFSDKR 99
+S G+ PT+ +F R
Sbjct: 62 ETTSQFGIMSIPTLILFKGGR 82
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++TD++F+ V + + LV+F+A WCG K + P E+ A++ EGK + +D +
Sbjct: 8 KVTDADFDSKVESG--VQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPS 65
Query: 202 IAGEFNIRGYPTIKFFSPG 220
A ++ + PT+ F G
Sbjct: 66 TAAKYEVMSIPTLIVFKDG 84
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
S+ ++K+T ++FD KV V +V+++A WCG + +LA +G + ++
Sbjct: 2 SHMAIVKVTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLD 59
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKR 99
DE S ++ + V PT+ +F D +
Sbjct: 60 VDENPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD+NF++ + D LV+F+A WCG C+ + P E+ A KV + ++ +
Sbjct: 5 LTDANFQQAI-QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 203 AGEFNIRGYPTIKFFSPG 220
+F I PT+ F G
Sbjct: 64 TSQFGIMSIPTLILFKGG 81
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
+ LT +NF + I+ D +V+++A WCG C+ + A A V V +N DE
Sbjct: 3 MTLTDANFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 79 SLSSSHGVTGFPTVKIFSDKR 99
+S G+ PT+ +F R
Sbjct: 62 ETTSQFGIMSIPTLILFKGGR 82
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD+NF++ + D LV+F+A WCG C+ + P E+ A KV + ++ +
Sbjct: 5 LTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 203 AGEFNIRGYPTIKFFSPG 220
+F I PT+ F G
Sbjct: 64 TSQFGIMSIPTLILFKGG 81
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
+ LT +NF + I+ D+ +V+++A WCG C+ + A A V V +N DE
Sbjct: 3 MTLTDANFQ-QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 79 SLSSSHGVTGFPTVKIF 95
+S G+ PT+ +F
Sbjct: 62 ETTSQFGIMSIPTLILF 78
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
LTD+NF++ + D LV+F+A WCG C+ + P E+ A KV + ++ +
Sbjct: 5 LTDANFQQAI-QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 203 AGEFNIRGYPTIKFFSPG 220
+F I PT+ F G
Sbjct: 64 TSQFGIMSIPTLILFKGG 81
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
+ LT +NF + I+ D +V+++A WCG C+ + A A V V +N DE
Sbjct: 3 MTLTDANFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 79 SLSSSHGVTGFPTVKIF 95
+S G+ PT+ +F
Sbjct: 62 ETTSQFGIMSIPTLILF 78
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
VI L + NFD + S E+ +V+++A WC C +LA V G +N+DE
Sbjct: 1 VIHLDSKNFD-SFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQV-GFGKLNSDEN 58
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+++ +GV PTV F D
Sbjct: 59 PDIAARYGVMSLPTVIFFKD 78
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
L NF+ + S +I +V+F+A WC C L P E+ A + +V G +++ + I
Sbjct: 4 LDSKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENPDI 61
Query: 203 AGEFNIRGYPTIKFFSPG 220
A + + PT+ FF G
Sbjct: 62 AARYGVMSLPTVIFFKDG 79
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++TD++F+ V + + LV+F+A CG CK + P E+ A++ EGK + +D +
Sbjct: 7 KVTDADFDSKVESG--VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPS 64
Query: 202 IAGEFNIRGYPTIKFFSPG 220
A ++ + PT+ F G
Sbjct: 65 TAAKYEVMSIPTLIVFKDG 83
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
S+ ++K+T ++FD KV V +V+++A CG C+ +LA +G + ++
Sbjct: 1 SHMAIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLD 58
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKR 99
DE S ++ + V PT+ +F D +
Sbjct: 59 VDENPSTAAKYEVMSIPTLIVFKDGQ 84
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP 212
Y D +V+F+A WCG CK + P E+ + E GK+ + V+ +A +F I+ P
Sbjct: 48 YLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIP 107
Query: 213 TIKF 216
TI F
Sbjct: 108 TIWF 111
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 16 SDVIKLTTSNFDDKVIK-----------SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 64
S I LT + F K+ D+ IV++YA WCG C+ +L+
Sbjct: 22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA 81
Query: 65 GVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
G + + VN D+E L+ G+ PT+ K P GA + + +
Sbjct: 82 GKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQL 130
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
++TD++F V +S+ LV+F+A WCG K + P E+ A+E + + +D +
Sbjct: 13 KVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPE 72
Query: 202 IAGEFNIRGYPTIKFFSPG 220
A F + PT+ F G
Sbjct: 73 TARNFQVVSIPTLILFKDG 91
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 48/99 (48%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
S IK+T ++F V+ S++ +V+++A WCG + ++AT + V ++ D
Sbjct: 9 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVD 68
Query: 76 EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII 114
+ + V PT+ +F D + GA+ A++
Sbjct: 69 TNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALL 107
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG CK ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDAQDVASEAEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KATPTFQFFKKGQK 85
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG C+ K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDAQDVASEAEVKATPTFQ 78
Query: 94 IFSDKRNPTPYQGAR 108
F + + GA
Sbjct: 79 FFKKGQKVGEFSGAN 93
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG CK ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KSMPTFQFFKKGQK 85
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG C+ K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKSMPTFQ 78
Query: 94 IFSDKRNPTPYQGAR 108
F + + GA
Sbjct: 79 FFKKGQKVGEFSGAN 93
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGY 211
+ + +++ +V+FFA WCG CK + P +E+ S+ K+ VD + + NI
Sbjct: 22 IISQNELVIVDFFAEWCGPCKRIAPFYEE-CSKTYTKMVFIKVDVDEVSEVTEKENITSM 80
Query: 212 PTIKFFSPGS 221
PT K + GS
Sbjct: 81 PTFKVYKNGS 90
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 18 VIKLTTSNFD-DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
++K+ TS + D +I +E+ IV+++A WCG C+ Y + + +V + V+ DE
Sbjct: 9 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIK-VDVDE 67
Query: 77 EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGAR 108
++ +T PT K++ + + GA
Sbjct: 68 VSEVTEKENITSMPTFKVYKNGSSVDTLLGAN 99
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 422 DKVIKSDEVWIVEYYAPWCGHCQ 444
D +I +E+ IV+++A WCG C+
Sbjct: 20 DSIISQNELVIVDFFAEWCGPCK 42
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG CK ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASESEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KSMPTFQFFKKGQK 85
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG C+ K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASESEVKSMPTFQ 78
Query: 94 IFSDKRNPTPYQGAR 108
F + + GA
Sbjct: 79 FFKKGQKVGEFSGAN 93
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG CK ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVNDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KCMPTFQFFKKGQK 85
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG C+ K + L+ V+ + V+ ++ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVNDCQDVASECEVKCMPTFQ 78
Query: 94 IFSDKRNPTPYQGAR 108
F + + GA
Sbjct: 79 FFKKGQKVGEFSGAN 93
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG CK ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASEXEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KCMPTFQFFKKGQK 85
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG C+ K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASEXEVKCMPTFQ 78
Query: 94 IFSDKRNPTPYQGAR 108
F + + GA
Sbjct: 79 FFKKGQKVGEFSGAN 93
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG CK ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSRSASDAQEYNGGR 234
+ PT +FF G + E++G
Sbjct: 72 KCMPTFQFFKKGQKVG----EFSGAN 93
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG C+ K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKCMPTFQ 78
Query: 94 IFSDKRNPTPYQGAR 108
F + + GA
Sbjct: 79 FFKKGQKVGEFSGAN 93
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
L NF++ + + I +V+F+A WC C L P E+ A++ +V G ++ Q I
Sbjct: 11 LNSKNFDEFI-TKNKIVVVDFWAEWCAPCLILAPVIEELANDY-PQVAFGKLNTEESQDI 68
Query: 203 AGEFNIRGYPTIKFFSPG 220
A + I PTI FF G
Sbjct: 69 AMRYGIMSLPTIMFFKNG 86
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
L + NFD+ + K +++ +V+++A WC C +LA V G +N +E + +
Sbjct: 11 LNSKNFDEFITK-NKIVVVDFWAEWCAPCLILAPVIEELANDYPQVA-FGKLNTEESQDI 68
Query: 81 SSSHGVTGFPTVKIFSD 97
+ +G+ PT+ F +
Sbjct: 69 AMRYGIMSLPTIMFFKN 85
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG CK ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KCTPTFQFFKKGQK 85
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG C+ K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKCTPTFQ 78
Query: 94 IFSDKRNPTPYQGAR 108
F + + GA
Sbjct: 79 FFKKGQKVGEFSGAN 93
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
SY+ + KLT +IK ++ ++++YA WCG C+ + KL A V+ +
Sbjct: 10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCD 68
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
DE ++ VT PT + D
Sbjct: 69 VDESPDIAKECEVTAMPTFVLGKD 92
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
+ F L+ +D + +++F+A WCG CK ++PH K V+ D IA E
Sbjct: 21 TEFRNLIKQNDKL-VIDFYATWCGPCKMMQPHLTKLIQAYP-DVRFVKCDVDESPDIAKE 78
Query: 206 FNIRGYPT 213
+ PT
Sbjct: 79 CEVTAMPT 86
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 424 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATA 456
+IK ++ ++++YA WCG C+ + KL A
Sbjct: 26 LIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQA 58
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG K ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPSKMIKPFFH-SLSEKYSNVIFLEVDVDDSQDVASESEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KSMPTFQFFKKGQK 85
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG + K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDSQDVASESEVKSMPTFQ 78
Query: 94 IFSDKRNPTPYQGAR 108
F + + GA
Sbjct: 79 FFKKGQKVGEFSGAN 93
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG K ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPAKMIKPFFH-SLSEKYSNVIFLEVDVDDAQDVASEAEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KATPTFQFFKKGQK 85
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG + K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFL-EVDVDDAQDVASEAEVKATPTFQ 78
Query: 94 IFSDKRNPTPYQGAR 108
F + + GA
Sbjct: 79 FFKKGQKVGEFSGAN 93
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
+TD+ FE V ++ LV F+A WCG C+ + P AA+ ++K+ ++ +
Sbjct: 12 ITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTT 71
Query: 203 AGEFNIRGYPTIKF 216
++ + G P ++
Sbjct: 72 VKKYKVEGVPALRL 85
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 46/97 (47%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
VI +T + F+ +V+K+++ +V ++A WCG CQ A +KV + D
Sbjct: 9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPN 68
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII 114
+ + V G P +++ ++ +G + D ++
Sbjct: 69 PTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLL 105
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 420 FDDKVIKSDEVWIVEYYAPWCGHCQ 444
F+ +V+K+++ +V ++A WCG CQ
Sbjct: 17 FESEVLKAEQPVLVYFWASWCGPCQ 41
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
S ++ + + D + +V+FFA WCG CK + P EK A E +D +A +
Sbjct: 16 SEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQK 74
Query: 206 FNIRGYPTIKFFSPG 220
+ PT+ F+ G
Sbjct: 75 AEVSSMPTLIFYKGG 89
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS 81
+ S +D + D++ +V+++A WCG C+ K A ++ DE ++
Sbjct: 14 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAA-FYKLDVDEVSDVA 72
Query: 82 SSHGVTGFPTVKIFSDKRNPTPYQGARTA 110
V+ PT+ + + T GA A
Sbjct: 73 QKAEVSSMPTLIFYKGGKEVTRVVGANPA 101
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
K +D + D++ +V+++A WCG C+
Sbjct: 13 KSASEYDSALASGDKLVVVDFFATWCGPCK 42
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
S ++ + + D + +V+FFA WCG CK + P EK A E +D +A +
Sbjct: 9 SEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQK 67
Query: 206 FNIRGYPTIKFFSPG 220
+ PT+ F+ G
Sbjct: 68 AEVSSMPTLIFYKGG 82
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS 81
+ S +D + D++ +V+++A WCG C+ K A ++ DE ++
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAA-FYKLDVDEVSDVA 65
Query: 82 SSHGVTGFPTVKIFSDKRNPTPYQGARTA 110
V+ PT+ + + T GA A
Sbjct: 66 QKAEVSSMPTLIFYKGGKEVTRVVGANPA 94
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
K +D + D++ +V+++A WCG C+
Sbjct: 6 KSASEYDSALASGDKLVVVDFFATWCGPCK 35
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQS----FKDEYMKLATALKGVVKVGA 71
S V++LT FD V+ ++ V YY PW H + + D M + + V A
Sbjct: 15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA 74
Query: 72 -VNADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGAR 108
++ ++ + V+GFPT++ ++ DK+ P Y G R
Sbjct: 75 RIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQR 114
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK-AASELEGKVKLGAVDATVHQ 200
ELTD F+ +V + + V ++ PW H W+ + S+ + + L V A
Sbjct: 19 ELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA---- 74
Query: 201 RIAGE--------FNIRGYPTIKFFSPGSRSASDAQEYNGGR 234
RI GE + G+PT+++++ + + EY+G R
Sbjct: 75 RIDGEKYPDVIERMRVSGFPTMRYYTRIDK--QEPFEYSGQR 114
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG K ++P + + SE V VD Q +A E +
Sbjct: 24 EALDAAGDKLVVVDFSATWCGPSKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASECEV 82
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 83 KSMPTFQFFKKGQK 96
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG + K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 31 DKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKSMPTFQ 89
Query: 94 IFSDKRNPTPYQGA 107
F + + GA
Sbjct: 90 FFKKGQKVGEFSGA 103
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 158 IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
+ +++F A WCG C+ + P + + A + G V L VD + +A ++N+ PT F
Sbjct: 38 VVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVDELKEVAEKYNVEAMPTFLFI 96
Query: 218 SPGSRS 223
G+ +
Sbjct: 97 KDGAEA 102
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 26 FDDKVIKSDE---VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSS 82
FD ++ K+ E V I+++ A WCG C+ + + A G V + V+ DE K ++
Sbjct: 25 FDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVDELKEVAE 83
Query: 83 SHGVTGFPTVKIFSDKRNPTPYQGARTAD 111
+ V PT D GAR D
Sbjct: 84 KYNVEAMPTFLFIKDGAEADKVVGARKDD 112
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG K ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPSKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KRMPTFQFFKKGQK 85
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG + K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKRMPTFQ 78
Query: 94 IFSDKRNPTPYQGA 107
F + + GA
Sbjct: 79 FFKKGQKVGEFSGA 92
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 144 TDSNFEKLVYNSDD---IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
T F+ + N D + +++F A WCG C+ + P + + A + G + L VD +
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFL-KVDVDELK 71
Query: 201 RIAGEFNIRGYPTIKFFSPGSRSAS 225
+A +N+ PT F G + S
Sbjct: 72 DVAEAYNVEAMPTFLFIKDGEKVDS 96
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
I+++ A WCG C+ + + A G + + V+ DE K ++ ++ V PT D
Sbjct: 32 IIDFTASWCGPCRVIAPVFAEYAKKFPGAIFL-KVDVDELKDVAEAYNVEAMPTFLFIKD 90
Query: 98 KRNPTPYQGARTAD 111
G R D
Sbjct: 91 GEKVDSVVGGRKDD 104
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 38/97 (39%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
L + FE+L+Y+ LV F C C+ + P E+ E VD + +
Sbjct: 9 LDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTL 68
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI 239
F+++G P I +F G A + Q I
Sbjct: 69 FQRFSLKGVPQILYFKDGEYKGKXAGDVEDDEVEQXI 105
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS 79
KL T+ F+ + + +V + C CQ +L + V+ +EEK+
Sbjct: 8 KLDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT 67
Query: 80 LSSSHGVTGFPTVKIFSDKRNPTPYQGARTADA 112
L + G P + F D Y+G D
Sbjct: 68 LFQRFSLKGVPQILYFKD----GEYKGKXAGDV 96
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 158 IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
+ +++F+A WCG CK + P E+ + + V L VD + IA + I PT F
Sbjct: 22 LVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFL-KVDVDECEDIAQDNQIACMPTFLFM 80
Query: 218 SPGSRSAS 225
G + S
Sbjct: 81 KNGQKLDS 88
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
+++ ++++YA WCG C+ + +L+ ++ VV + V+ DE + ++ + + PT
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFL-KVDVDECEDIAQDNQIACMPTFL 78
Query: 94 IFSDKRNPTPYQGAR 108
+ + GA
Sbjct: 79 FMKNGQKLDSLSGAN 93
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
+++ F WCG CK + P +EK A E + L ++ +A E IR PT K
Sbjct: 41 VLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKE 100
Query: 220 GS 221
S
Sbjct: 101 NS 102
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV 92
D+ +++ + WCG C++ +Y KLA V+ + E K+L+ G+ PT
Sbjct: 36 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 95
Query: 93 KIFSDKRNPTPYQGARTADAIIDVALEAIR 122
KI + GA+ D LEAI+
Sbjct: 96 KILKENSVVGEVTGAK-----YDKLLEAIQ 120
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
+++ F WCG CK + P +EK A E + L ++ +A E IR PT K
Sbjct: 29 VLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKE 88
Query: 220 GS 221
S
Sbjct: 89 NS 90
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV 92
D+ +++ + WCG C++ +Y KLA V+ + E K+L+ G+ PT
Sbjct: 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 83
Query: 93 KIFSDKRNPTPYQGARTADAIIDVALEAIR 122
KI + GA+ D LEAI+
Sbjct: 84 KILKENSVVGEVTGAK-----YDKLLEAIQ 108
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 145 DSNFEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
D + E L+ + + + +V+FFA WCG CK + P +++ + + + VD + A
Sbjct: 21 DGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKLEETA 78
Query: 204 GEFNIRGYPTIKFFSPGSR 222
++NI PT G +
Sbjct: 79 RKYNISAMPTFIAIKNGEK 97
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/58 (18%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT 91
+++ +V+++A WCG C++ + +L+ + V+ D+ + + + ++ PT
Sbjct: 33 NKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFV--KVDVDKLEETARKYNISAMPT 88
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 145 DSNFEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
D + E L+ + + + +V+FFA WCG CK + P +++ + + + VD + A
Sbjct: 12 DGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKLEETA 69
Query: 204 GEFNIRGYPTIKFFSPGSR 222
++NI PT G +
Sbjct: 70 RKYNISAMPTFIAIKNGEK 88
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/58 (18%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT 91
+++ +V+++A WCG C++ + +L+ + V+ D+ + + + ++ PT
Sbjct: 24 NKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFV--KVDVDKLEETARKYNISAMPT 79
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAV 72
S +++ + SN + +S ++ Y+ + HC LA G + +
Sbjct: 5 SVQNIVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKL 64
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
+ D E+ +++ G+ PTV +F + + +QG + +AI
Sbjct: 65 DCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI 105
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 155 SDDIWLVEFF-APWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT 213
S+DI V +F A WCG CK +E EK A E VK VDA + I + + PT
Sbjct: 35 SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPT 93
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVG 70
YPS DV + F + I S+++ V ++ A WCG C++ + K+A VK
Sbjct: 18 YPSVVDV--YSVEQFRN--IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFA 72
Query: 71 AVNADEEKSLSSSHGVTGFPTVKI 94
V+AD + S V PT I
Sbjct: 73 KVDADNNSEIVSKCRVLQLPTFII 96
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A WCG CK ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDXQDVASEXEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KCMPTFQFFKKGQK 85
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D++ +V++ A WCG C+ K + L+ V+ + V+ D+ + ++S V PT +
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDXQDVASEXEVKCMPTFQ 78
Query: 94 IFSDKRNPTPYQGA 107
F + + GA
Sbjct: 79 FFKKGQKVGEFSGA 92
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
T S F+ + D + +V+F+A WCG CK + P EK SE + +D +A
Sbjct: 7 TASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEK-FSEQYPQADFYKLDVDELGDVA 64
Query: 204 GEFNIRGYPTIKFFSPGSRSA 224
+ + PT+ F G A
Sbjct: 65 QKNEVSAMPTLLLFKNGKEVA 85
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
V + T++ D I D++ +V++YA WCG C+ K + ++ DE
Sbjct: 2 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDEL 60
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA 110
++ + V+ PT+ +F + + GA A
Sbjct: 61 GDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 93
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 422 DKVIKSDEVWIVEYYAPWCGHCQ 444
D I D++ +V++YA WCG C+
Sbjct: 12 DSAIAQDKLVVVDFYATWCGPCK 34
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
T S F+ + D + +V+F+A WCG CK + P EK SE + +D +A
Sbjct: 13 TASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEK-FSEQYPQADFYKLDVDELGDVA 70
Query: 204 GEFNIRGYPTIKFFSPGSRSA 224
+ + PT+ F G A
Sbjct: 71 QKNEVSAMPTLLLFKNGKEVA 91
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
V + T++ D I D++ +V++YA WCG C+ K + ++ DE
Sbjct: 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDEL 66
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA 110
++ + V+ PT+ +F + + GA A
Sbjct: 67 GDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 99
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 422 DKVIKSDEVWIVEYYAPWCGHCQ 444
D I D++ +V++YA WCG C+
Sbjct: 18 DSAIAQDKLVVVDFYATWCGPCK 40
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
S ++ + + D + +V+FFA WCG K + P EK A E +D +A +
Sbjct: 9 SEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQK 67
Query: 206 FNIRGYPTIKFFSPG 220
+ PT+ F+ G
Sbjct: 68 AEVSSMPTLIFYKGG 82
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS 81
+ S +D + D++ +V+++A WCG + K A ++ DE ++
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAA-FYKLDVDEVSDVA 65
Query: 82 SSHGVTGFPTVKIFSDKRNPTPYQGARTA 110
V+ PT+ + + T GA A
Sbjct: 66 QKAEVSSMPTLIFYKGGKEVTRVVGANPA 94
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
S ++ + + D + +V+FFA WCG K + P EK A E +D +A +
Sbjct: 17 SEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQK 75
Query: 206 FNIRGYPTIKFFSPG 220
+ PT+ F+ G
Sbjct: 76 AEVSSMPTLIFYKGG 90
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS 81
+ S +D + D++ +V+++A WCG + K A ++ DE ++
Sbjct: 15 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAA-FYKLDVDEVSDVA 73
Query: 82 SSHGVTGFPTVKIFSDKRNPTPYQGARTA 110
V+ PT+ + + T GA A
Sbjct: 74 QKAEVSSMPTLIFYKGGKEVTRVVGANPA 102
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI 214
S + +V+F A WCG C+ + P + A +L + L VD + +A ++ I+ PT
Sbjct: 37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLK-VDTDELKSVASDWAIQAMPTF 95
Query: 215 KFFSPG 220
F G
Sbjct: 96 MFLKEG 101
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 22 TTSNFDDKVIKSDE---VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
T +++++ K++E + +V++ A WCG C+ + LA L V+ + V+ DE K
Sbjct: 23 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLK-VDTDELK 81
Query: 79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGAR 108
S++S + PT + + GA+
Sbjct: 82 SVASDWAIQAMPTFMFLKEGKILDKVVGAK 111
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVG 70
+ S +++ + SN + +S ++ Y+ + HC LA G +
Sbjct: 3 HMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILA 62
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
++ D E+ +++ G+ PTV +F + + +QG + +AI
Sbjct: 63 KLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI 105
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
E L D + +V+F A W G K ++P + + SE V VD Q +A E +
Sbjct: 13 EALDAAGDKLVVVDFSATWSGPSKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSR 222
+ PT +FF G +
Sbjct: 72 KCMPTFQFFKKGQK 85
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 36.6 bits (83), Expect = 0.033, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
+++F A WCG C+ + P + A + V L VD + IA +F++ PT F
Sbjct: 38 VIDFTASWCGPCRIMAPVFADLAKKFPNAVFL-KVDVDELKPIAEQFSVEAMPTFLFMKE 96
Query: 220 G 220
G
Sbjct: 97 G 97
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
++++ A WCG C+ + LA V + V+ DE K ++ V PT +
Sbjct: 38 VIDFTASWCGPCRIMAPVFADLAKKFPNAVFL-KVDVDELKPIAEQFSVEAMPTFLFMKE 96
Query: 98 KRNPTPYQGARTADAIIDVALEAIRQ 123
GA + V L A Q
Sbjct: 97 GDVKDRVVGAIKEELTAKVGLHAAAQ 122
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE------GKVKLGA-VDATVHQR 201
E+L + W+VEFFA W C++ P + + + GKV +G D + +
Sbjct: 19 EELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYK 78
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251
++ + PT+ F G + Q GR V+W ++ ENV
Sbjct: 79 VSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRA----VSWTFSE--ENV 122
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 26 FDDKVIKSD------EVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEK 78
F+DK I + WIVE++A W CQSF Y L+ + G V+
Sbjct: 12 FNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYT 71
Query: 79 SLSSSHGVTGFPTVK 93
+S+ + V+ P K
Sbjct: 72 DVSTRYKVSTSPLTK 86
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 420 FDDKVIKSD------EVWIVEYYAPWCGHCQSFKDEYMKLATALKVYC 461
F+DK I + WIVE++A W CQSF Y L +LK C
Sbjct: 12 FNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADL--SLKYNC 57
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
+++ F WCG K + P +EK A E + L ++ +A E IR PT K
Sbjct: 28 VLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKE 87
Query: 220 GS 221
S
Sbjct: 88 NS 89
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
D+ +++ + WCG ++ +Y KLA V+ + E K+L+ G+ PT K
Sbjct: 24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFK 83
Query: 94 IFSDKRNPTPYQGARTADAIIDVALEAIR 122
I + GA+ D LEAI+
Sbjct: 84 ILKENSVVGEVTGAK-----YDKLLEAIQ 107
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 35 EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94
+V I + +P C HC + K ++A + V+V +N E + +G+ PT+ I
Sbjct: 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62
Query: 95 FSDKRNPTPYQGARTADAIIDVALEAIRQ 123
D + GA T +A++ EAI++
Sbjct: 63 NGD----VEFIGAPTKEALV----EAIKK 83
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 163 FFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI 214
F +P C HC + E+ A+E+ V++ ++ + + A E+ I PTI
Sbjct: 9 FTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTI 60
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT 213
S + +V+F A WC CK + P + + A + V VD + +A E+N+ PT
Sbjct: 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 214 IKFFSPG 220
F G
Sbjct: 83 FIFLKDG 89
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 28 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVT 87
+++ ++ + +V+++A WCG CQ +A A K V + V+ D+ + + ++GV+
Sbjct: 17 NRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFI-KVDVDKNGNAADAYGVS 75
Query: 88 GFPTV 92
P +
Sbjct: 76 SIPAL 80
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 158 IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
+ LV+FFA WCG C+ L A E V VD + A + + P + F
Sbjct: 25 LVLVDFFATWCGPCQRLGQILPSIA-EANKDVTFIKVDVDKNGNAADAYGVSSIPALFFV 83
Query: 218 SPGSRSASDAQEYNGGRTSQ 237
++ G S+
Sbjct: 84 KKEGNEIKTLDQFVGADVSR 103
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
+V+F A WCG CK + P +E +++ GKV VD +A I PT +
Sbjct: 28 VVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKD 87
Query: 220 GSRS 223
G ++
Sbjct: 88 GVKA 91
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
+V++ A WCG C+ + L+ G V V+ D +++ + G+T PT ++ D
Sbjct: 28 VVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKD 87
Query: 98 KRNPTPYQGA 107
GA
Sbjct: 88 GVKADDLVGA 97
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
T S F+ + D + +V+F+A WCG K + P EK SE + +D +A
Sbjct: 13 TASEFDSAIAQ-DKLVVVDFYATWCGPSKMIAPMIEK-FSEQYPQADFYKLDVDELGDVA 70
Query: 204 GEFNIRGYPTIKFFSPGSRSA 224
+ + PT+ F G A
Sbjct: 71 QKNEVSAMPTLLLFKNGKEVA 91
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCG-------HCQSFKDEYMKLATALKGVVKVG 70
V + T++ D I D++ +V++YA WCG + F ++Y +
Sbjct: 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQ--------ADFY 59
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA 110
++ DE ++ + V+ PT+ +F + + GA A
Sbjct: 60 KLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 99
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 422 DKVIKSDEVWIVEYYAPWCG 441
D I D++ +V++YA WCG
Sbjct: 18 DSAIAQDKLVVVDFYATWCG 37
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
+V F A WCG CK + P +E +++ GKV VD +A I PT +
Sbjct: 28 VVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKD 87
Query: 220 GSRS 223
G ++
Sbjct: 88 GVKA 91
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
+V + A WCG C+ + L+ G V V+ D +++ + G+T PT ++ D
Sbjct: 28 VVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKD 87
Query: 98 KRNPTPYQGA 107
GA
Sbjct: 88 GVKADDLVGA 97
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
+++F A WC C ++ +++ + V L +D +H ++ + NI+ PT +F+
Sbjct: 44 VIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPTFEFY 99
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
SN V + + ++ FFA WC C +K ++ L VD ++ +A +
Sbjct: 32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARK 91
Query: 206 FNIRGYPTI 214
F+++ PTI
Sbjct: 92 FSVKSLPTI 100
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 37 WIVEYYAPWCGHCQSFKDEYMKLATALK--------GVVKVGAVNADEEKSLSSSHGVTG 88
WIV +Y CG C+ + + K A LK + AVN E L + +
Sbjct: 45 WIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINF 104
Query: 89 FPTVKIF 95
P + F
Sbjct: 105 VPRLFFF 111
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 407 DVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459
D + DL D+F+ +V WIV +Y CG C+ + + K A LKV
Sbjct: 22 DSSVVDLSGDDFSRVHRVAPLCP-WIVLFYNDGCGACRRYASTFSKFAGGLKV 73
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 159 WLVEFFAPWCGHCKNLEPHWEKAASELE---GKVKL-----GAVDATVHQRIAGEFNIRG 210
W+V F+ CG C+ + K A L+ GK L AV+ + +++I
Sbjct: 45 WIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINF 104
Query: 211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEA-----TF 265
P + FF P S+ + G +S + V + + + E++++V++ +
Sbjct: 105 VPRLFFFYPRDSCRSNEE---CGTSSLEHVAFENSHLEVDELESEVRRLVNKHMVVDDSL 161
Query: 266 KEACED 271
KE C D
Sbjct: 162 KERCID 167
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
+++F A WCG + + P + A + V L VD + IA +F++ PT F
Sbjct: 41 VIDFTASWCGPSRIMAPVFADLAKKFPNAVFL-KVDVDELKPIAEQFSVEAMPTFLFMKE 99
Query: 220 G 220
G
Sbjct: 100 G 100
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 149 EKLVYNSDD--IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF 206
+KL S D I L F A WCG CK + P++ + SE + +D + +
Sbjct: 37 QKLSEASRDGKIVLANFSARWCGPCKQIAPYYIE-LSENYPSLMFLVIDVDELSDFSASW 95
Query: 207 NIRGYPTIKFFSPGSR 222
I+ PT F G +
Sbjct: 96 EIKATPTFFFLRDGQQ 111
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS 79
KL+ ++ D K++ + + A WCG C+ Y++L+ ++ + ++ DE
Sbjct: 38 KLSEASRDGKIV------LANFSARWCGPCKQIAPYYIELSENYPSLMFL-VIDVDELSD 90
Query: 80 LSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
S+S + PT D + GA
Sbjct: 91 FSASWEIKATPTFFFLRDGQQVDKLVGA 118
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 147 NFEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
FE+L+ + + +V F+APW C + + A EL +V ++A ++ +
Sbjct: 22 QFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEGVPEVSEK 80
Query: 206 FNIRGYPTIKFF 217
+ I PT FF
Sbjct: 81 YEISSVPTFLFF 92
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
++FE L SD I V F C HCKN+E +K + +V + +VD+ + E
Sbjct: 14 AHFEGL---SDAI--VFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKE 67
Query: 206 FNIRGYPTIKFFSPG 220
PT+ F G
Sbjct: 68 LGFERVPTLVFIRDG 82
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 148 FEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF 206
FE+L+ + + +V F+APW C + + A EL +V ++A ++ ++
Sbjct: 29 FEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKY 87
Query: 207 NIRGYPTIKFF 217
I PT FF
Sbjct: 88 EISSVPTFLFF 98
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
pdb|1I19|B Chain B, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
Length = 561
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSY-------D 357
+ +K W +W+ + +PD N E+G G + L K + + GP++Y +
Sbjct: 265 FTEKPWMKVWTVSPTKPDSSN--EVGSLG--SAGSLVGKPPQAREVSGPYNYIFSDNLPE 320
Query: 358 GINEFLRDLSYGRGHTAPVKGAALPQINQV 387
I + + ++ G AP+ G A+ +I ++
Sbjct: 321 PITDMIGAINAGNPGIAPLFGPAMYEITKL 350
>pdb|2I0K|A Chain A, Cholesterol Oxidase From Brevibacterium Sterolicum-
His121ala Mutant
Length = 561
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSY-------D 357
+ +K W +W+ + +PD N E+G G + L K + + GP++Y +
Sbjct: 265 FTEKPWMKVWTVSPTKPDSSN--EVGSLG--SAGSLVGKPPQAREVSGPYNYIFSDNLPE 320
Query: 358 GINEFLRDLSYGRGHTAPVKGAALPQINQV 387
I + + ++ G AP+ G A+ +I ++
Sbjct: 321 PITDMIGAINAGNPGIAPLFGPAMYEITKL 350
>pdb|2KUA|A Chain A, Solution Structure Of A Divergent Bcl-2 Protein
Length = 170
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 286 CQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM 345
C+S R N LE+++++ DK K + WS+ V L G P MAV + +
Sbjct: 66 CES--RGNRLELVKQMADKLLSKDQDFSWSQLVMLLAFAGTLMNQG---PYMAVKQKRDL 120
Query: 346 KYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDG 392
++ +N FL +L GR H A ++ + WDG
Sbjct: 121 GNRVIVTRDCCLIVN-FLYNLLMGRRHRA--------RLEALGGWDG 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,370,642
Number of Sequences: 62578
Number of extensions: 616025
Number of successful extensions: 1909
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 427
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)