Query psy17502
Match_columns 461
No_of_seqs 267 out of 3345
Neff 10.1
Searched_HMMs 46136
Date Sat Aug 17 00:12:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 100.0 1E-68 2.2E-73 505.9 31.3 386 14-459 23-415 (493)
2 TIGR01130 ER_PDI_fam protein d 100.0 2.8E-49 6E-54 396.1 37.9 386 16-459 1-395 (462)
3 PTZ00102 disulphide isomerase; 100.0 3.9E-49 8.4E-54 395.7 37.2 368 16-459 32-406 (477)
4 KOG0912|consensus 100.0 9.3E-31 2E-35 226.7 25.7 322 21-382 1-333 (375)
5 KOG0191|consensus 100.0 9.1E-30 2E-34 246.1 21.2 237 11-259 24-264 (383)
6 KOG4277|consensus 100.0 3.9E-28 8.4E-33 209.9 19.8 311 18-371 30-355 (468)
7 PF01216 Calsequestrin: Calseq 100.0 6.6E-25 1.4E-29 194.8 31.7 321 15-372 33-373 (383)
8 KOG0190|consensus 99.9 2.8E-25 6E-30 211.2 22.5 261 136-459 23-286 (493)
9 TIGR02187 GlrX_arch Glutaredox 99.9 7.1E-25 1.5E-29 194.6 20.1 201 22-245 9-214 (215)
10 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.1E-24 2.3E-29 170.6 11.5 107 11-117 4-113 (113)
11 KOG0191|consensus 99.9 1.1E-21 2.5E-26 189.8 20.3 280 140-456 31-315 (383)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.9E-22 4.2E-27 157.1 12.1 99 17-116 2-100 (101)
13 PTZ00102 disulphide isomerase; 99.9 8.7E-21 1.9E-25 190.6 24.2 224 17-247 233-465 (477)
14 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.3E-21 2.7E-26 153.5 11.3 101 17-117 2-104 (104)
15 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.3E-21 5E-26 152.9 11.1 101 16-117 1-108 (108)
16 cd03007 PDI_a_ERp29_N PDIa fam 99.9 1.9E-21 4.2E-26 150.7 9.8 99 17-120 2-115 (116)
17 PF00085 Thioredoxin: Thioredo 99.9 4.6E-21 9.9E-26 150.3 11.9 102 18-120 1-103 (103)
18 KOG0910|consensus 99.9 2.2E-21 4.8E-26 153.7 9.1 106 16-121 43-148 (150)
19 cd03065 PDI_b_Calsequestrin_N 99.9 3.7E-21 8.1E-26 151.3 10.3 108 13-121 6-119 (120)
20 TIGR01130 ER_PDI_fam protein d 99.8 1.6E-19 3.4E-24 181.1 23.6 226 16-247 217-454 (462)
21 cd02994 PDI_a_TMX PDIa family, 99.8 3.8E-20 8.3E-25 144.2 11.1 99 16-118 1-100 (101)
22 cd03002 PDI_a_MPD1_like PDI fa 99.8 6.5E-20 1.4E-24 145.2 11.5 101 17-117 1-108 (109)
23 COG3118 Thioredoxin domain-con 99.8 5.3E-20 1.1E-24 161.9 11.1 109 14-122 21-131 (304)
24 cd03001 PDI_a_P5 PDIa family, 99.8 1.7E-19 3.6E-24 141.3 11.8 101 17-117 1-102 (103)
25 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.1E-19 2.5E-24 142.0 9.8 99 17-117 1-102 (102)
26 cd03006 PDI_a_EFP1_N PDIa fami 99.8 3.7E-19 7.9E-24 139.3 11.4 103 137-243 8-113 (113)
27 PRK09381 trxA thioredoxin; Pro 99.8 4.3E-19 9.3E-24 140.3 11.9 107 15-121 2-108 (109)
28 PF13848 Thioredoxin_6: Thiore 99.8 6E-18 1.3E-22 147.5 20.3 177 172-365 6-184 (184)
29 PTZ00443 Thioredoxin domain-co 99.8 3.1E-19 6.6E-24 156.5 11.5 110 15-124 29-142 (224)
30 cd02963 TRX_DnaJ TRX domain, D 99.8 2.2E-19 4.7E-24 141.8 9.1 101 19-119 7-110 (111)
31 cd02956 ybbN ybbN protein fami 99.8 9E-19 1.9E-23 135.1 10.7 94 24-117 1-95 (96)
32 cd02993 PDI_a_APS_reductase PD 99.8 1.2E-18 2.6E-23 137.4 11.0 101 17-117 2-109 (109)
33 PHA02278 thioredoxin-like prot 99.8 5.9E-19 1.3E-23 135.8 9.0 94 22-116 3-100 (103)
34 cd02997 PDI_a_PDIR PDIa family 99.8 8.3E-19 1.8E-23 137.6 9.9 100 17-117 1-104 (104)
35 TIGR01126 pdi_dom protein disu 99.8 1.3E-18 2.9E-23 135.9 10.2 99 21-120 1-101 (102)
36 PRK10996 thioredoxin 2; Provis 99.8 2.6E-18 5.5E-23 141.2 11.9 104 16-120 35-138 (139)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 3E-18 6.5E-23 134.4 11.0 99 18-117 2-104 (104)
38 cd02954 DIM1 Dim1 family; Dim1 99.8 1.5E-18 3.2E-23 134.2 8.4 91 23-113 2-93 (114)
39 cd02999 PDI_a_ERp44_like PDIa 99.8 2.1E-18 4.5E-23 133.1 9.2 84 32-117 16-100 (100)
40 cd02983 P5_C P5 family, C-term 99.8 1.9E-17 4.1E-22 133.3 14.2 119 254-372 2-120 (130)
41 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 9.5E-18 2.1E-22 130.6 12.1 100 139-243 2-101 (101)
42 KOG0912|consensus 99.8 4.3E-17 9.3E-22 142.2 16.6 200 143-366 1-207 (375)
43 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 9.1E-18 2E-22 131.5 11.4 102 139-243 2-104 (104)
44 cd02998 PDI_a_ERp38 PDIa famil 99.8 6.9E-18 1.5E-22 132.6 10.8 100 17-117 1-105 (105)
45 PF00085 Thioredoxin: Thioredo 99.7 1.8E-17 3.8E-22 129.8 11.9 103 140-246 1-103 (103)
46 cd02965 HyaE HyaE family; HyaE 99.7 8.6E-18 1.9E-22 128.9 9.1 98 16-114 10-109 (111)
47 cd02962 TMX2 TMX2 family; comp 99.7 9.5E-18 2.1E-22 138.1 9.3 98 9-106 21-126 (152)
48 cd02948 TRX_NDPK TRX domain, T 99.7 1.7E-17 3.8E-22 128.9 10.1 96 21-119 5-101 (102)
49 cd02961 PDI_a_family Protein D 99.7 1.8E-17 3.9E-22 129.2 10.1 98 19-117 1-101 (101)
50 cd02985 TRX_CDSP32 TRX family, 99.7 2.3E-17 5E-22 128.4 10.3 95 22-118 2-100 (103)
51 cd03000 PDI_a_TMX3 PDIa family 99.7 5E-17 1.1E-21 127.1 11.0 98 19-120 3-103 (104)
52 TIGR01068 thioredoxin thioredo 99.7 4.1E-17 9E-22 127.2 10.4 100 21-120 1-100 (101)
53 cd03007 PDI_a_ERp29_N PDIa fam 99.7 6.7E-17 1.4E-21 125.4 10.3 100 140-246 3-115 (116)
54 KOG0910|consensus 99.7 5.1E-17 1.1E-21 129.0 9.7 104 140-247 45-148 (150)
55 cd02996 PDI_a_ERp44 PDIa famil 99.7 9.8E-17 2.1E-21 126.4 11.3 101 139-243 2-108 (108)
56 KOG4277|consensus 99.7 1.6E-16 3.6E-21 138.2 13.4 186 154-366 41-230 (468)
57 PTZ00062 glutaredoxin; Provisi 99.7 3.3E-16 7.2E-21 134.9 14.8 162 22-216 5-174 (204)
58 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.5E-16 3.3E-21 125.8 11.6 104 140-243 2-108 (109)
59 cd03065 PDI_b_Calsequestrin_N 99.7 1.3E-16 2.8E-21 125.7 10.7 102 139-245 10-117 (120)
60 TIGR00424 APS_reduc 5'-adenyly 99.7 1.4E-16 3E-21 153.6 12.6 109 9-119 345-461 (463)
61 KOG1731|consensus 99.7 9.8E-17 2.1E-21 152.3 11.1 232 7-246 30-272 (606)
62 cd02953 DsbDgamma DsbD gamma f 99.7 1.4E-16 3E-21 124.7 10.3 93 24-117 2-103 (104)
63 cd02992 PDI_a_QSOX PDIa family 99.7 3E-16 6.6E-21 124.2 11.8 97 17-113 2-108 (114)
64 cd02957 Phd_like Phosducin (Ph 99.7 4.3E-17 9.4E-22 129.3 6.8 93 16-110 4-98 (113)
65 cd03001 PDI_a_P5 PDIa family, 99.7 5.7E-16 1.2E-20 121.2 12.0 101 140-243 2-102 (103)
66 PLN02309 5'-adenylylsulfate re 99.7 4.5E-16 9.7E-21 150.0 12.3 107 14-120 343-456 (457)
67 cd02994 PDI_a_TMX PDIa family, 99.7 8.2E-16 1.8E-20 119.7 11.4 98 139-244 2-100 (101)
68 cd02989 Phd_like_TxnDC9 Phosdu 99.7 3E-16 6.5E-21 123.8 8.8 90 17-108 5-95 (113)
69 cd02949 TRX_NTR TRX domain, no 99.7 5.7E-16 1.2E-20 119.4 9.8 91 27-117 6-96 (97)
70 KOG0907|consensus 99.7 3.5E-16 7.6E-21 120.3 8.4 84 32-117 19-102 (106)
71 PLN00410 U5 snRNP protein, DIM 99.7 9.6E-16 2.1E-20 123.3 11.3 105 22-126 10-125 (142)
72 cd02950 TxlA TRX-like protein 99.6 1.3E-15 2.9E-20 125.3 11.5 99 23-122 10-111 (142)
73 cd02984 TRX_PICOT TRX domain, 99.6 9.5E-16 2.1E-20 118.4 9.4 93 23-117 2-96 (97)
74 cd02993 PDI_a_APS_reductase PD 99.6 2E-15 4.3E-20 119.0 11.2 102 139-243 2-109 (109)
75 PTZ00051 thioredoxin; Provisio 99.6 1.2E-15 2.5E-20 118.1 9.4 93 18-113 2-95 (98)
76 PTZ00443 Thioredoxin domain-co 99.6 2.7E-15 5.8E-20 131.7 12.5 110 137-250 29-142 (224)
77 PRK09381 trxA thioredoxin; Pro 99.6 4.8E-15 1E-19 117.1 11.9 106 138-247 3-108 (109)
78 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 3.6E-15 7.8E-20 116.9 10.9 102 139-243 1-104 (104)
79 cd03005 PDI_a_ERp46 PDIa famil 99.6 3.6E-15 7.8E-20 116.4 10.5 98 140-243 2-102 (102)
80 cd02963 TRX_DnaJ TRX domain, D 99.6 3.3E-15 7.1E-20 117.9 10.2 100 142-245 8-110 (111)
81 cd02956 ybbN ybbN protein fami 99.6 5.1E-15 1.1E-19 114.1 10.5 93 147-243 2-95 (96)
82 COG3118 Thioredoxin domain-con 99.6 1.3E-14 2.9E-19 128.0 11.9 109 135-247 20-130 (304)
83 TIGR01126 pdi_dom protein disu 99.6 1.6E-14 3.5E-19 112.7 11.3 99 143-246 1-101 (102)
84 cd02975 PfPDO_like_N Pyrococcu 99.6 1.2E-14 2.5E-19 114.9 10.3 96 24-121 13-110 (113)
85 cd02999 PDI_a_ERp44_like PDIa 99.6 8.8E-15 1.9E-19 112.9 9.1 84 154-243 16-100 (100)
86 cd02986 DLP Dim1 family, Dim1- 99.6 9.8E-15 2.1E-19 111.8 9.2 78 24-101 3-81 (114)
87 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.8E-14 3.9E-19 113.1 11.0 101 140-243 2-105 (105)
88 cd02947 TRX_family TRX family; 99.6 1.3E-14 2.9E-19 110.8 9.5 92 24-117 1-92 (93)
89 PHA02278 thioredoxin-like prot 99.6 1.9E-14 4.2E-19 110.8 10.0 93 145-242 4-100 (103)
90 cd02997 PDI_a_PDIR PDIa family 99.6 2.5E-14 5.5E-19 112.0 10.8 99 140-243 2-104 (104)
91 TIGR02187 GlrX_arch Glutaredox 99.6 3E-13 6.5E-18 120.2 18.6 189 156-365 19-214 (215)
92 PRK10996 thioredoxin 2; Provis 99.6 5.1E-14 1.1E-18 115.7 12.2 103 139-246 36-138 (139)
93 TIGR01295 PedC_BrcD bacterioci 99.6 2.1E-14 4.7E-19 114.5 9.6 99 16-117 6-120 (122)
94 cd02954 DIM1 Dim1 family; Dim1 99.6 1.5E-14 3.2E-19 112.0 8.3 75 146-220 3-78 (114)
95 cd02987 Phd_like_Phd Phosducin 99.5 2E-14 4.4E-19 122.2 8.6 89 16-106 62-153 (175)
96 PF13848 Thioredoxin_6: Thiore 99.5 5.4E-13 1.2E-17 116.2 17.9 173 51-245 7-184 (184)
97 TIGR01068 thioredoxin thioredo 99.5 1E-13 2.2E-18 107.8 11.3 99 144-246 2-100 (101)
98 cd02992 PDI_a_QSOX PDIa family 99.5 1.8E-13 3.8E-18 108.4 12.3 101 139-239 2-108 (114)
99 cd02951 SoxW SoxW family; SoxW 99.5 8E-14 1.7E-18 112.9 10.3 99 25-124 5-122 (125)
100 cd02985 TRX_CDSP32 TRX family, 99.5 1.5E-13 3.1E-18 107.0 10.8 95 144-244 2-100 (103)
101 cd02961 PDI_a_family Protein D 99.5 1.3E-13 2.8E-18 107.2 10.5 98 142-243 2-101 (101)
102 cd02982 PDI_b'_family Protein 99.5 1.1E-13 2.5E-18 108.0 9.8 87 34-120 12-102 (103)
103 cd03000 PDI_a_TMX3 PDIa family 99.5 2.6E-13 5.7E-18 106.0 11.1 93 146-245 7-102 (104)
104 cd02965 HyaE HyaE family; HyaE 99.5 2.7E-13 5.9E-18 104.1 10.6 96 140-240 12-109 (111)
105 TIGR00424 APS_reduc 5'-adenyly 99.5 2.3E-13 5.1E-18 131.4 12.6 108 135-245 348-461 (463)
106 PLN02309 5'-adenylylsulfate re 99.5 2.8E-13 6E-18 130.9 12.7 108 135-245 342-455 (457)
107 cd02948 TRX_NDPK TRX domain, T 99.5 4.2E-13 9.2E-18 104.2 11.1 96 143-245 5-101 (102)
108 cd02988 Phd_like_VIAF Phosduci 99.5 1.7E-13 3.7E-18 118.1 9.5 88 16-107 82-171 (192)
109 cd02962 TMX2 TMX2 family; comp 99.5 5.8E-13 1.3E-17 109.8 11.8 92 137-232 27-126 (152)
110 KOG0908|consensus 99.5 2.5E-13 5.5E-18 115.7 8.8 98 22-121 8-106 (288)
111 cd02957 Phd_like Phosducin (Ph 99.4 7.1E-13 1.5E-17 105.1 10.5 80 139-220 5-86 (113)
112 TIGR00411 redox_disulf_1 small 99.4 5E-13 1.1E-17 99.6 8.9 80 37-120 2-81 (82)
113 cd02952 TRP14_like Human TRX-r 99.4 6.1E-13 1.3E-17 104.4 8.2 79 22-101 8-103 (119)
114 cd02949 TRX_NTR TRX domain, no 99.4 1.6E-12 3.4E-17 100.1 10.0 92 148-243 5-96 (97)
115 cd02989 Phd_like_TxnDC9 Phosdu 99.4 2.4E-12 5.2E-17 101.6 10.9 103 139-243 5-112 (113)
116 cd02953 DsbDgamma DsbD gamma f 99.4 2E-12 4.3E-17 101.1 10.4 94 146-243 2-103 (104)
117 KOG0907|consensus 99.4 1.7E-12 3.7E-17 99.9 9.5 85 154-244 19-103 (106)
118 PLN00410 U5 snRNP protein, DIM 99.4 6.8E-12 1.5E-16 101.1 11.1 77 144-220 10-88 (142)
119 cd02984 TRX_PICOT TRX domain, 99.4 7.4E-12 1.6E-16 96.5 10.3 94 145-243 2-96 (97)
120 cd02950 TxlA TRX-like protein 99.3 1.3E-11 2.8E-16 101.6 11.5 106 146-256 11-118 (142)
121 cd03072 PDI_b'_ERp44 PDIb' fam 99.3 7.8E-12 1.7E-16 97.9 9.7 107 256-370 1-111 (111)
122 PTZ00051 thioredoxin; Provisio 99.3 9.5E-12 2.1E-16 96.1 10.0 93 140-239 2-95 (98)
123 cd02959 ERp19 Endoplasmic reti 99.3 4.7E-12 1E-16 100.4 8.1 92 30-121 15-113 (117)
124 PF01216 Calsequestrin: Calseq 99.3 2.5E-10 5.5E-15 102.6 19.3 207 139-371 35-251 (383)
125 cd02986 DLP Dim1 family, Dim1- 99.3 1.2E-11 2.6E-16 94.8 9.1 75 146-220 3-78 (114)
126 KOG1731|consensus 99.3 1.6E-11 3.6E-16 117.2 10.8 132 135-266 36-178 (606)
127 TIGR03143 AhpF_homolog putativ 99.3 3E-10 6.4E-15 115.6 20.2 187 33-243 365-554 (555)
128 cd02975 PfPDO_like_N Pyrococcu 99.3 3.7E-11 7.9E-16 94.9 10.4 90 154-246 20-109 (113)
129 cd02987 Phd_like_Phd Phosducin 99.3 3.7E-11 7.9E-16 102.3 11.1 103 137-245 61-173 (175)
130 cd02955 SSP411 TRX domain, SSP 99.2 4.3E-11 9.3E-16 95.2 9.5 99 22-121 4-119 (124)
131 PF13098 Thioredoxin_2: Thiore 99.2 1.4E-11 3E-16 97.8 6.6 86 32-117 3-112 (112)
132 cd02947 TRX_family TRX family; 99.2 5.7E-11 1.2E-15 90.5 9.8 91 147-243 2-92 (93)
133 PHA02125 thioredoxin-like prot 99.2 3.2E-11 6.9E-16 87.6 7.4 69 38-115 2-71 (75)
134 cd02982 PDI_b'_family Protein 99.2 7.6E-11 1.6E-15 91.9 9.8 87 156-245 12-101 (103)
135 TIGR00412 redox_disulf_2 small 99.2 3.8E-11 8.3E-16 87.3 7.3 72 39-117 3-75 (76)
136 TIGR01295 PedC_BrcD bacterioci 99.2 1.5E-10 3.4E-15 92.3 10.2 98 139-243 7-120 (122)
137 PRK11509 hydrogenase-1 operon 99.1 2.6E-10 5.7E-15 90.4 9.4 105 17-122 18-125 (132)
138 cd02988 Phd_like_VIAF Phosduci 99.1 3.2E-10 6.9E-15 97.8 10.6 101 137-245 81-190 (192)
139 KOG0908|consensus 99.1 3.2E-10 6.9E-15 97.0 9.3 102 140-247 3-106 (288)
140 cd03073 PDI_b'_ERp72_ERp57 PDI 99.1 5.9E-10 1.3E-14 87.1 10.1 105 258-367 3-111 (111)
141 cd02951 SoxW SoxW family; SoxW 99.1 5.9E-10 1.3E-14 90.2 10.6 96 147-246 5-118 (125)
142 PRK00293 dipZ thiol:disulfide 99.1 3.5E-10 7.6E-15 114.5 10.8 98 22-120 459-569 (571)
143 TIGR00411 redox_disulf_1 small 99.1 7.1E-10 1.5E-14 82.4 9.7 79 159-245 2-80 (82)
144 PRK14018 trifunctional thiored 99.1 4.4E-10 9.6E-15 110.3 9.7 92 30-121 52-173 (521)
145 PRK03147 thiol-disulfide oxido 99.1 1.1E-09 2.4E-14 94.2 11.0 102 18-120 46-171 (173)
146 KOG0913|consensus 99.1 5.1E-11 1.1E-15 101.1 2.4 106 12-121 20-126 (248)
147 TIGR02740 TraF-like TraF-like 99.1 7E-10 1.5E-14 101.3 9.3 88 33-122 165-265 (271)
148 cd02973 TRX_GRX_like Thioredox 99.0 6.3E-10 1.4E-14 79.1 6.9 57 37-94 2-58 (67)
149 TIGR02738 TrbB type-F conjugat 99.0 1.3E-09 2.8E-14 90.3 9.7 87 31-119 47-151 (153)
150 cd03008 TryX_like_RdCVF Trypar 99.0 1.1E-09 2.4E-14 89.6 8.6 66 33-98 24-123 (146)
151 PF13905 Thioredoxin_8: Thiore 99.0 1.6E-09 3.5E-14 83.0 9.0 64 34-97 1-91 (95)
152 cd02952 TRP14_like Human TRX-r 99.0 2.6E-09 5.6E-14 84.0 9.9 77 144-220 8-100 (119)
153 cd03010 TlpA_like_DsbE TlpA-li 99.0 1.5E-09 3.3E-14 88.1 8.9 79 33-113 24-126 (127)
154 PTZ00062 glutaredoxin; Provisi 99.0 1.1E-08 2.4E-13 88.5 14.5 115 143-277 4-118 (204)
155 PRK15412 thiol:disulfide inter 99.0 2.9E-09 6.3E-14 92.2 10.6 90 32-124 66-179 (185)
156 cd02964 TryX_like_family Trypa 99.0 2.2E-09 4.7E-14 87.7 8.3 66 33-98 16-110 (132)
157 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 3.1E-09 6.8E-14 85.7 9.0 93 20-115 7-120 (123)
158 TIGR00385 dsbE periplasmic pro 99.0 3.4E-09 7.4E-14 90.8 9.7 88 31-121 60-171 (173)
159 cd02958 UAS UAS family; UAS is 99.0 4.3E-09 9.4E-14 83.5 9.5 92 30-121 13-111 (114)
160 cd03009 TryX_like_TryX_NRX Try 99.0 3.5E-09 7.5E-14 86.5 8.8 67 33-99 17-111 (131)
161 cd02966 TlpA_like_family TlpA- 98.9 3.8E-09 8.3E-14 83.9 8.6 74 33-106 18-116 (116)
162 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 4.2E-09 9E-14 78.8 7.6 77 33-114 11-87 (89)
163 cd02959 ERp19 Endoplasmic reti 98.9 4.4E-09 9.6E-14 83.4 7.0 85 153-237 16-103 (117)
164 KOG0914|consensus 98.8 4.4E-09 9.6E-14 88.1 5.5 91 14-105 122-222 (265)
165 cd02960 AGR Anterior Gradient 98.8 1.6E-08 3.5E-13 80.3 8.4 76 30-107 19-99 (130)
166 smart00594 UAS UAS domain. 98.8 3E-08 6.4E-13 79.5 8.6 88 30-117 23-121 (122)
167 COG2143 Thioredoxin-related pr 98.8 3.5E-08 7.5E-13 78.3 8.5 95 30-124 38-152 (182)
168 cd02981 PDI_b_family Protein D 98.8 1.1E-07 2.3E-12 73.1 10.5 93 142-245 3-96 (97)
169 PLN02919 haloacid dehalogenase 98.8 3.4E-08 7.3E-13 107.0 10.4 92 33-124 419-539 (1057)
170 PRK13728 conjugal transfer pro 98.8 5.8E-08 1.3E-12 81.9 9.5 83 38-122 73-172 (181)
171 PF13899 Thioredoxin_7: Thiore 98.8 1.8E-08 3.8E-13 74.7 5.8 66 30-96 13-81 (82)
172 TIGR00412 redox_disulf_2 small 98.7 4.5E-08 9.8E-13 71.1 7.5 72 161-243 3-75 (76)
173 cd02967 mauD Methylamine utili 98.7 2.1E-08 4.4E-13 79.7 6.0 60 33-92 20-82 (114)
174 cd03012 TlpA_like_DipZ_like Tl 98.7 6.8E-08 1.5E-12 78.2 8.4 75 33-107 22-125 (126)
175 PHA02125 thioredoxin-like prot 98.7 7.3E-08 1.6E-12 69.9 7.6 68 160-240 2-70 (75)
176 PF13098 Thioredoxin_2: Thiore 98.7 6E-08 1.3E-12 76.7 6.9 87 154-243 3-112 (112)
177 cd02973 TRX_GRX_like Thioredox 98.6 1.2E-07 2.7E-12 67.1 7.2 57 159-216 2-58 (67)
178 cd02955 SSP411 TRX domain, SSP 98.6 2E-07 4.2E-12 74.3 9.0 77 145-222 5-92 (124)
179 PRK00293 dipZ thiol:disulfide 98.6 2.5E-07 5.4E-12 94.0 11.6 105 140-246 454-569 (571)
180 PRK15317 alkyl hydroperoxide r 98.6 3.1E-06 6.7E-11 85.8 19.3 177 34-246 19-197 (517)
181 KOG2501|consensus 98.6 7.7E-08 1.7E-12 77.8 5.7 66 33-98 32-126 (157)
182 COG4232 Thiol:disulfide interc 98.6 2.1E-07 4.6E-12 90.7 9.7 100 19-120 457-567 (569)
183 PRK11509 hydrogenase-1 operon 98.6 5.2E-07 1.1E-11 71.7 10.1 102 141-247 20-124 (132)
184 TIGR02740 TraF-like TraF-like 98.5 3.8E-07 8.3E-12 83.4 9.6 91 155-247 165-264 (271)
185 PLN02399 phospholipid hydroper 98.5 5.7E-07 1.2E-11 79.9 9.6 89 33-121 98-234 (236)
186 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 7.9E-07 1.7E-11 66.5 8.6 76 155-239 11-86 (89)
187 PF08534 Redoxin: Redoxin; In 98.5 6E-07 1.3E-11 74.7 8.9 77 33-109 27-136 (146)
188 PRK14018 trifunctional thiored 98.5 8.6E-07 1.9E-11 87.5 10.7 89 153-244 53-170 (521)
189 KOG1672|consensus 98.5 2E-07 4.4E-12 77.0 5.2 90 18-109 68-158 (211)
190 TIGR02661 MauD methylamine deh 98.5 1.1E-06 2.5E-11 76.3 10.1 85 33-119 73-177 (189)
191 COG0526 TrxA Thiol-disulfide i 98.5 8.1E-07 1.7E-11 70.7 8.6 73 34-106 32-107 (127)
192 TIGR03140 AhpF alkyl hydropero 98.5 1.4E-05 3.1E-10 80.9 19.5 180 33-246 18-198 (515)
193 PTZ00056 glutathione peroxidas 98.5 9.1E-07 2E-11 77.3 9.1 89 33-121 38-178 (199)
194 PLN02412 probable glutathione 98.4 8.5E-07 1.8E-11 75.4 8.5 89 33-121 28-164 (167)
195 cd03066 PDI_b_Calsequestrin_mi 98.4 3.5E-06 7.5E-11 65.2 11.1 96 140-246 2-100 (102)
196 KOG0913|consensus 98.4 1.1E-07 2.4E-12 81.1 2.3 101 139-247 25-126 (248)
197 PRK03147 thiol-disulfide oxido 98.4 2.3E-06 4.9E-11 73.5 10.5 88 155-245 60-170 (173)
198 TIGR02196 GlrX_YruB Glutaredox 98.4 8.4E-07 1.8E-11 64.1 6.7 68 38-117 2-73 (74)
199 TIGR02738 TrbB type-F conjugat 98.4 2.8E-06 6.1E-11 70.5 10.0 89 155-245 49-151 (153)
200 KOG0911|consensus 98.4 3.7E-06 8E-11 71.8 10.4 174 32-220 15-202 (227)
201 PF13905 Thioredoxin_8: Thiore 98.4 2.6E-06 5.7E-11 65.0 8.9 65 156-220 1-92 (95)
202 cd03069 PDI_b_ERp57 PDIb famil 98.4 4.5E-06 9.8E-11 64.7 10.1 94 144-246 7-103 (104)
203 cd01659 TRX_superfamily Thiore 98.3 1.9E-06 4E-11 60.2 7.1 60 38-98 1-63 (69)
204 cd03009 TryX_like_TryX_NRX Try 98.3 2.7E-06 5.9E-11 69.3 8.7 66 155-220 17-109 (131)
205 PF07912 ERp29_N: ERp29, N-ter 98.3 7.4E-06 1.6E-10 63.0 9.5 102 17-121 5-119 (126)
206 cd02964 TryX_like_family Trypa 98.3 4E-06 8.6E-11 68.4 8.7 66 155-220 16-109 (132)
207 cd03010 TlpA_like_DsbE TlpA-li 98.3 3.3E-06 7.2E-11 68.4 8.1 80 155-239 24-126 (127)
208 TIGR01626 ytfJ_HI0045 conserve 98.3 4E-06 8.6E-11 71.3 8.6 80 33-115 58-174 (184)
209 cd03072 PDI_b'_ERp44 PDIb' fam 98.3 1.1E-05 2.4E-10 63.2 10.5 101 18-121 1-108 (111)
210 cd02966 TlpA_like_family TlpA- 98.2 4.9E-06 1.1E-10 65.7 8.1 65 156-220 19-107 (116)
211 PF13728 TraF: F plasmid trans 98.2 4.8E-06 1E-10 73.4 8.7 82 33-116 119-213 (215)
212 cd02969 PRX_like1 Peroxiredoxi 98.2 1.1E-05 2.3E-10 69.2 10.7 89 33-121 24-152 (171)
213 cd00340 GSH_Peroxidase Glutath 98.2 2.8E-06 6.1E-11 71.1 6.9 42 33-75 21-63 (152)
214 cd03011 TlpA_like_ScsD_MtbDsbE 98.2 7.9E-06 1.7E-10 65.7 9.3 81 155-241 19-120 (123)
215 cd02983 P5_C P5 family, C-term 98.2 2.4E-05 5.2E-10 63.1 11.9 108 17-124 3-118 (130)
216 cd03008 TryX_like_RdCVF Trypar 98.2 7E-06 1.5E-10 67.3 8.6 66 155-220 24-122 (146)
217 TIGR02540 gpx7 putative glutat 98.2 5.7E-06 1.2E-10 69.4 8.2 42 33-74 21-63 (153)
218 cd02958 UAS UAS family; UAS is 98.2 1.6E-05 3.5E-10 62.9 10.3 91 153-246 14-110 (114)
219 TIGR00385 dsbE periplasmic pro 98.2 8.5E-06 1.8E-10 69.8 9.2 87 155-247 62-171 (173)
220 cd03067 PDI_b_PDIR_N PDIb fami 98.2 1E-05 2.2E-10 59.4 8.0 95 23-119 9-110 (112)
221 cd02981 PDI_b_family Protein D 98.2 2.1E-05 4.6E-10 60.2 10.5 94 19-119 2-96 (97)
222 PRK15412 thiol:disulfide inter 98.2 1.4E-05 3.1E-10 69.2 10.0 87 155-247 67-176 (185)
223 cd03068 PDI_b_ERp72 PDIb famil 98.2 2.2E-05 4.8E-10 61.0 9.8 99 140-246 2-107 (107)
224 PF02114 Phosducin: Phosducin; 98.2 5.5E-06 1.2E-10 75.1 7.2 102 16-120 125-237 (265)
225 PF13192 Thioredoxin_3: Thiore 98.1 1.7E-05 3.7E-10 57.5 8.4 73 39-118 3-76 (76)
226 TIGR02200 GlrX_actino Glutared 98.1 4.8E-06 1E-10 60.7 5.6 56 38-100 2-62 (77)
227 smart00594 UAS UAS domain. 98.1 2.5E-05 5.4E-10 62.5 10.0 104 140-243 11-121 (122)
228 PF07912 ERp29_N: ERp29, N-ter 98.1 0.0001 2.2E-09 56.8 12.2 103 139-247 5-119 (126)
229 TIGR02739 TraF type-F conjugat 98.1 2.1E-05 4.6E-10 70.5 10.0 89 34-124 150-251 (256)
230 PF13899 Thioredoxin_7: Thiore 98.1 8.9E-06 1.9E-10 60.1 6.2 66 153-219 14-82 (82)
231 cd02967 mauD Methylamine utili 98.1 8.6E-06 1.9E-10 64.5 6.4 60 155-214 20-82 (114)
232 cd03073 PDI_b'_ERp72_ERp57 PDI 98.1 4E-05 8.7E-10 59.9 9.7 100 19-120 2-110 (111)
233 KOG2603|consensus 98.1 3.8E-05 8.3E-10 68.8 10.6 109 14-123 38-168 (331)
234 KOG0914|consensus 98.0 1.4E-05 3E-10 67.5 6.6 83 139-221 125-216 (265)
235 TIGR02180 GRX_euk Glutaredoxin 98.0 1.6E-05 3.5E-10 59.0 5.9 55 38-94 1-60 (84)
236 PF00578 AhpC-TSA: AhpC/TSA fa 98.0 3.3E-05 7.2E-10 62.1 8.0 66 33-98 24-118 (124)
237 PLN02919 haloacid dehalogenase 98.0 3.5E-05 7.7E-10 84.0 10.1 90 155-247 419-536 (1057)
238 PF03190 Thioredox_DsbH: Prote 97.9 3.1E-05 6.6E-10 64.0 7.2 78 20-98 24-113 (163)
239 PRK13728 conjugal transfer pro 97.9 6.6E-05 1.4E-09 63.5 9.3 83 160-247 73-171 (181)
240 cd03017 PRX_BCP Peroxiredoxin 97.9 3.5E-05 7.6E-10 63.5 7.6 82 34-115 23-137 (140)
241 cd02991 UAS_ETEA UAS family, E 97.9 9.4E-05 2E-09 58.3 9.5 91 30-121 13-113 (116)
242 cd02960 AGR Anterior Gradient 97.9 5.4E-05 1.2E-09 60.3 8.0 68 152-221 19-90 (130)
243 COG4232 Thiol:disulfide interc 97.9 4.6E-05 9.9E-10 74.8 8.8 102 141-246 457-567 (569)
244 PRK13703 conjugal pilus assemb 97.9 6.6E-05 1.4E-09 66.9 8.9 89 34-122 143-242 (248)
245 KOG2603|consensus 97.9 0.00013 2.8E-09 65.5 10.5 110 138-247 40-166 (331)
246 PF14595 Thioredoxin_9: Thiore 97.9 4.8E-05 1E-09 61.2 6.7 82 21-103 28-113 (129)
247 PF07449 HyaE: Hydrogenase-1 e 97.9 3.6E-05 7.7E-10 58.8 5.6 94 16-111 9-105 (107)
248 PTZ00256 glutathione peroxidas 97.8 0.00012 2.6E-09 63.2 9.1 42 34-75 40-83 (183)
249 cd03015 PRX_Typ2cys Peroxiredo 97.8 0.0001 2.2E-09 63.2 8.6 88 33-120 28-156 (173)
250 cd02970 PRX_like2 Peroxiredoxi 97.8 9.9E-05 2.2E-09 61.5 8.2 47 33-79 23-70 (149)
251 PRK00522 tpx lipid hydroperoxi 97.8 0.00017 3.7E-09 61.3 9.0 43 33-76 43-86 (167)
252 TIGR03137 AhpC peroxiredoxin. 97.8 0.00014 2.9E-09 63.1 8.6 87 33-119 30-154 (187)
253 cd03012 TlpA_like_DipZ_like Tl 97.7 0.00017 3.7E-09 58.2 8.5 66 155-220 22-115 (126)
254 PF13192 Thioredoxin_3: Thiore 97.7 0.00025 5.5E-09 51.3 8.4 71 163-244 5-76 (76)
255 TIGR03143 AhpF_homolog putativ 97.7 0.0016 3.5E-08 66.7 17.4 195 148-363 357-554 (555)
256 PF06110 DUF953: Eukaryotic pr 97.7 0.00023 4.9E-09 55.8 8.4 66 33-98 18-99 (119)
257 cd03074 PDI_b'_Calsequestrin_C 97.7 0.00093 2E-08 49.8 10.2 108 255-367 2-120 (120)
258 PRK09437 bcp thioredoxin-depen 97.7 0.00018 3.8E-09 60.4 7.5 80 33-112 29-144 (154)
259 cd03071 PDI_b'_NRX PDIb' famil 97.6 0.00033 7.2E-09 52.1 7.7 91 272-367 14-115 (116)
260 PRK11200 grxA glutaredoxin 1; 97.6 0.00017 3.6E-09 53.6 6.5 76 37-121 2-83 (85)
261 PRK10877 protein disulfide iso 97.6 0.00015 3.3E-09 64.8 7.4 83 33-120 106-230 (232)
262 cd01659 TRX_superfamily Thiore 97.6 0.00021 4.7E-09 49.3 6.7 60 160-220 1-63 (69)
263 COG0526 TrxA Thiol-disulfide i 97.6 0.00031 6.7E-09 55.4 8.4 65 156-220 32-99 (127)
264 cd02968 SCO SCO (an acronym fo 97.6 0.00015 3.2E-09 59.9 6.5 44 33-76 21-69 (142)
265 TIGR02661 MauD methylamine deh 97.6 0.00058 1.3E-08 59.3 10.0 85 155-244 73-176 (189)
266 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00029 6.3E-09 50.4 6.8 51 38-94 2-56 (73)
267 TIGR02196 GlrX_YruB Glutaredox 97.5 0.00043 9.4E-09 49.6 7.3 68 160-243 2-73 (74)
268 PF13728 TraF: F plasmid trans 97.5 0.00051 1.1E-08 60.6 8.9 86 155-242 119-213 (215)
269 KOG3425|consensus 97.5 0.00063 1.4E-08 52.0 7.9 65 33-97 24-104 (128)
270 PF02114 Phosducin: Phosducin; 97.5 0.00081 1.8E-08 61.1 9.5 106 139-247 126-238 (265)
271 KOG2501|consensus 97.5 0.00036 7.9E-09 56.8 6.5 66 155-220 32-125 (157)
272 PF11009 DUF2847: Protein of u 97.4 0.00062 1.4E-08 51.7 7.0 79 22-101 6-91 (105)
273 PRK10606 btuE putative glutath 97.4 0.00065 1.4E-08 58.2 8.0 61 33-95 24-97 (183)
274 cd03067 PDI_b_PDIR_N PDIb fami 97.4 0.0017 3.6E-08 48.0 8.8 105 255-365 2-110 (112)
275 PRK10382 alkyl hydroperoxide r 97.4 0.0011 2.3E-08 57.2 9.1 88 33-120 30-155 (187)
276 PF08534 Redoxin: Redoxin; In 97.4 0.0013 2.8E-08 54.5 9.2 66 155-220 27-124 (146)
277 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.00051 1.1E-08 60.2 7.0 76 34-117 77-197 (197)
278 cd02971 PRX_family Peroxiredox 97.4 0.00071 1.5E-08 55.6 7.6 44 33-76 21-66 (140)
279 cd03018 PRX_AhpE_like Peroxire 97.4 0.00091 2E-08 55.6 8.3 45 32-76 26-72 (149)
280 PTZ00056 glutathione peroxidas 97.4 0.0012 2.7E-08 57.6 9.2 42 155-196 38-80 (199)
281 cd03014 PRX_Atyp2cys Peroxired 97.3 0.00074 1.6E-08 55.8 7.1 57 33-90 25-85 (143)
282 PF00462 Glutaredoxin: Glutare 97.3 0.00092 2E-08 45.8 6.3 51 38-94 1-55 (60)
283 PF13462 Thioredoxin_4: Thiore 97.3 0.0029 6.2E-08 53.4 10.7 82 33-119 11-162 (162)
284 PRK13190 putative peroxiredoxi 97.3 0.0011 2.3E-08 58.2 7.9 88 34-121 27-154 (202)
285 PLN02399 phospholipid hydroper 97.3 0.0024 5.3E-08 56.9 10.2 42 155-196 98-140 (236)
286 cd02969 PRX_like1 Peroxiredoxi 97.3 0.0036 7.9E-08 53.4 10.9 66 155-220 24-119 (171)
287 cd03023 DsbA_Com1_like DsbA fa 97.2 0.0027 5.8E-08 53.0 9.7 32 33-64 4-35 (154)
288 PF05768 DUF836: Glutaredoxin- 97.2 0.0014 3.1E-08 48.0 6.8 78 38-118 2-81 (81)
289 TIGR02183 GRXA Glutaredoxin, G 97.2 0.00089 1.9E-08 49.8 5.8 74 38-120 2-81 (86)
290 cd03066 PDI_b_Calsequestrin_mi 97.2 0.0059 1.3E-07 47.0 10.5 94 19-120 3-100 (102)
291 TIGR02180 GRX_euk Glutaredoxin 97.2 0.00075 1.6E-08 49.9 5.2 55 160-216 1-60 (84)
292 PRK15317 alkyl hydroperoxide r 97.2 0.001 2.2E-08 67.6 7.7 100 16-121 98-198 (517)
293 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.0011 2.4E-08 48.7 5.9 53 38-94 2-59 (82)
294 PRK15000 peroxidase; Provision 97.2 0.0021 4.5E-08 56.3 8.3 87 33-119 33-160 (200)
295 PRK11657 dsbG disulfide isomer 97.1 0.0035 7.7E-08 56.9 9.5 83 34-118 117-249 (251)
296 cd03016 PRX_1cys Peroxiredoxin 97.1 0.0029 6.2E-08 55.6 8.6 85 36-120 28-153 (203)
297 cd02991 UAS_ETEA UAS family, E 97.1 0.0044 9.6E-08 48.8 8.6 92 153-245 14-111 (116)
298 PF14595 Thioredoxin_9: Thiore 97.1 0.0027 5.9E-08 51.0 7.6 78 142-220 27-107 (129)
299 TIGR02200 GlrX_actino Glutared 97.1 0.0033 7.1E-08 45.4 7.4 54 160-220 2-60 (77)
300 KOG3414|consensus 97.0 0.0038 8.2E-08 48.1 7.5 68 33-100 22-89 (142)
301 PF06110 DUF953: Eukaryotic pr 97.0 0.0045 9.8E-08 48.6 8.2 67 154-220 17-99 (119)
302 TIGR02739 TraF type-F conjugat 97.0 0.0038 8.3E-08 56.2 8.8 88 156-245 150-246 (256)
303 TIGR02194 GlrX_NrdH Glutaredox 97.0 0.0024 5.2E-08 45.6 6.1 51 38-94 1-54 (72)
304 COG2143 Thioredoxin-related pr 97.0 0.0083 1.8E-07 48.3 9.3 87 152-241 38-143 (182)
305 cd00340 GSH_Peroxidase Glutath 97.0 0.00069 1.5E-08 56.6 3.4 31 428-459 22-52 (152)
306 cd02066 GRX_family Glutaredoxi 96.9 0.0026 5.7E-08 45.1 6.0 51 38-94 2-56 (72)
307 PRK13703 conjugal pilus assemb 96.9 0.0058 1.3E-07 54.7 8.9 88 156-245 143-239 (248)
308 TIGR02190 GlrX-dom Glutaredoxi 96.9 0.0033 7.1E-08 45.9 6.1 55 34-94 6-63 (79)
309 TIGR01626 ytfJ_HI0045 conserve 96.9 0.0044 9.6E-08 52.9 7.7 84 156-242 59-175 (184)
310 PTZ00137 2-Cys peroxiredoxin; 96.9 0.0057 1.2E-07 55.4 8.9 88 33-120 97-224 (261)
311 PF00578 AhpC-TSA: AhpC/TSA fa 96.9 0.0068 1.5E-07 48.4 8.5 44 155-198 24-69 (124)
312 cd03069 PDI_b_ERp57 PDIb famil 96.8 0.013 2.8E-07 45.3 9.3 89 23-120 8-103 (104)
313 PLN02412 probable glutathione 96.8 0.0013 2.7E-08 55.9 3.9 32 428-459 29-60 (167)
314 TIGR03140 AhpF alkyl hydropero 96.8 0.0039 8.4E-08 63.4 7.9 99 16-120 99-198 (515)
315 PRK13599 putative peroxiredoxi 96.8 0.0066 1.4E-07 53.7 8.1 87 33-119 28-154 (215)
316 cd02972 DsbA_family DsbA famil 96.7 0.0059 1.3E-07 46.2 6.9 59 38-96 1-91 (98)
317 TIGR02189 GlrX-like_plant Glut 96.7 0.0053 1.2E-07 46.9 6.4 57 30-94 4-67 (99)
318 PRK13189 peroxiredoxin; Provis 96.7 0.0077 1.7E-07 53.6 8.1 85 36-120 38-162 (222)
319 KOG0911|consensus 96.7 0.015 3.2E-07 50.2 9.3 77 153-234 14-90 (227)
320 TIGR02540 gpx7 putative glutat 96.7 0.0019 4E-08 54.1 3.8 32 428-459 22-53 (153)
321 cd03418 GRX_GRXb_1_3_like Glut 96.6 0.0087 1.9E-07 43.0 6.6 51 38-94 2-57 (75)
322 PHA03050 glutaredoxin; Provisi 96.6 0.0065 1.4E-07 47.2 6.2 60 30-94 9-75 (108)
323 cd03027 GRX_DEP Glutaredoxin ( 96.6 0.0094 2E-07 42.6 6.6 51 38-94 3-57 (73)
324 PRK10329 glutaredoxin-like pro 96.6 0.011 2.3E-07 43.3 6.8 71 38-120 3-76 (81)
325 TIGR02181 GRX_bact Glutaredoxi 96.5 0.0069 1.5E-07 44.1 5.6 51 38-94 1-55 (79)
326 PF02966 DIM1: Mitosis protein 96.5 0.021 4.6E-07 44.9 8.4 98 26-124 11-120 (133)
327 PF05768 DUF836: Glutaredoxin- 96.5 0.012 2.7E-07 43.0 6.9 80 160-244 2-81 (81)
328 KOG1672|consensus 96.4 0.0084 1.8E-07 50.3 6.0 79 140-220 68-147 (211)
329 KOG3425|consensus 96.4 0.019 4.1E-07 44.1 7.2 65 155-219 24-104 (128)
330 PRK11200 grxA glutaredoxin 1; 96.4 0.0099 2.1E-07 44.0 5.8 76 159-247 2-83 (85)
331 cd03029 GRX_hybridPRX5 Glutare 96.4 0.016 3.4E-07 41.3 6.5 51 38-94 3-56 (72)
332 PF07449 HyaE: Hydrogenase-1 e 96.3 0.0088 1.9E-07 45.8 5.2 79 140-220 11-92 (107)
333 PF00462 Glutaredoxin: Glutare 96.3 0.021 4.5E-07 39.0 6.7 51 160-216 1-55 (60)
334 PTZ00253 tryparedoxin peroxida 96.3 0.031 6.7E-07 49.0 9.1 86 34-119 36-162 (199)
335 cd02968 SCO SCO (an acronym fo 96.2 0.0051 1.1E-07 50.6 4.0 33 427-459 21-54 (142)
336 PF03190 Thioredox_DsbH: Prote 96.2 0.011 2.4E-07 49.1 5.8 79 141-220 23-112 (163)
337 cd03017 PRX_BCP Peroxiredoxin 96.2 0.024 5.1E-07 46.4 7.9 41 156-196 23-65 (140)
338 PRK13191 putative peroxiredoxi 96.2 0.029 6.4E-07 49.6 8.8 85 36-120 36-160 (215)
339 PF13743 Thioredoxin_5: Thiore 96.0 0.022 4.9E-07 48.7 7.0 36 40-75 2-37 (176)
340 COG0695 GrxC Glutaredoxin and 95.9 0.028 6E-07 41.0 5.9 52 38-95 3-60 (80)
341 cd02970 PRX_like2 Peroxiredoxi 95.8 0.012 2.5E-07 48.8 4.2 32 428-459 23-55 (149)
342 TIGR00365 monothiol glutaredox 95.8 0.044 9.4E-07 41.7 6.9 59 30-94 8-73 (97)
343 cd03068 PDI_b_ERp72 PDIb famil 95.8 0.13 2.8E-06 39.9 9.6 96 256-365 2-106 (107)
344 cd02976 NrdH NrdH-redoxin (Nrd 95.7 0.032 7E-07 39.5 5.8 51 160-216 2-56 (73)
345 PRK00522 tpx lipid hydroperoxi 95.6 0.042 9.1E-07 46.6 7.0 53 156-209 44-100 (167)
346 PTZ00256 glutathione peroxidas 95.6 0.012 2.6E-07 50.8 3.5 32 428-459 40-72 (183)
347 KOG3170|consensus 95.6 0.056 1.2E-06 45.6 7.1 83 16-102 91-175 (240)
348 cd03419 GRX_GRXh_1_2_like Glut 95.6 0.03 6.5E-07 40.9 5.2 53 160-216 2-59 (82)
349 cd03014 PRX_Atyp2cys Peroxired 95.5 0.049 1.1E-06 44.8 6.9 56 156-212 26-85 (143)
350 PRK10638 glutaredoxin 3; Provi 95.5 0.047 1E-06 40.1 6.0 51 38-94 4-58 (83)
351 KOG3414|consensus 95.5 0.098 2.1E-06 40.6 7.7 75 146-220 12-87 (142)
352 cd03018 PRX_AhpE_like Peroxire 95.5 0.016 3.6E-07 48.0 3.9 31 429-459 29-60 (149)
353 TIGR02183 GRXA Glutaredoxin, G 95.4 0.04 8.8E-07 40.8 5.4 75 160-247 2-82 (86)
354 cd03028 GRX_PICOT_like Glutare 95.4 0.061 1.3E-06 40.2 6.3 59 30-94 4-69 (90)
355 cd03015 PRX_Typ2cys Peroxiredo 95.4 0.018 3.8E-07 49.3 3.7 32 428-459 29-61 (173)
356 PRK09437 bcp thioredoxin-depen 95.3 0.11 2.4E-06 43.3 8.2 42 156-197 30-73 (154)
357 PF11009 DUF2847: Protein of u 95.1 0.14 3E-06 39.1 7.4 77 144-220 6-88 (105)
358 PRK10877 protein disulfide iso 95.0 0.16 3.4E-06 45.6 9.0 81 155-246 106-230 (232)
359 TIGR03137 AhpC peroxiredoxin. 95.0 0.026 5.6E-07 48.9 3.8 32 428-459 31-63 (187)
360 cd02971 PRX_family Peroxiredox 94.8 0.032 7E-07 45.6 3.7 32 427-458 21-53 (140)
361 TIGR02190 GlrX-dom Glutaredoxi 94.8 0.1 2.2E-06 37.9 5.9 54 157-216 7-63 (79)
362 PRK10606 btuE putative glutath 94.6 0.093 2E-06 45.0 6.2 42 155-197 24-66 (183)
363 cd02066 GRX_family Glutaredoxi 94.6 0.092 2E-06 36.9 5.3 51 160-216 2-56 (72)
364 TIGR02194 GlrX_NrdH Glutaredox 94.6 0.099 2.2E-06 37.1 5.4 50 161-216 2-54 (72)
365 KOG3171|consensus 94.6 0.2 4.2E-06 42.8 7.7 102 16-120 138-250 (273)
366 cd03020 DsbA_DsbC_DsbG DsbA fa 94.4 0.22 4.8E-06 43.5 8.3 77 155-243 76-197 (197)
367 cd03019 DsbA_DsbA DsbA family, 94.3 0.075 1.6E-06 45.5 5.0 42 33-74 14-55 (178)
368 PF02966 DIM1: Mitosis protein 94.2 0.44 9.4E-06 37.7 8.3 72 145-217 8-81 (133)
369 PRK10824 glutaredoxin-4; Provi 94.0 0.17 3.7E-06 39.6 5.8 59 30-94 11-76 (115)
370 KOG2640|consensus 94.0 0.021 4.5E-07 51.7 0.9 87 33-121 75-162 (319)
371 KOG1752|consensus 94.0 0.3 6.5E-06 37.4 7.0 62 26-94 7-73 (104)
372 cd03418 GRX_GRXb_1_3_like Glut 93.9 0.22 4.8E-06 35.5 6.0 51 160-216 2-57 (75)
373 TIGR02181 GRX_bact Glutaredoxi 93.8 0.15 3.2E-06 36.9 5.0 50 161-216 2-55 (79)
374 cd02978 KaiB_like KaiB-like fa 93.6 0.3 6.5E-06 34.4 5.9 60 36-95 2-62 (72)
375 cd02972 DsbA_family DsbA famil 93.5 0.25 5.3E-06 37.0 6.0 59 160-218 1-91 (98)
376 cd03027 GRX_DEP Glutaredoxin ( 93.4 0.32 6.9E-06 34.6 6.1 51 160-216 3-57 (73)
377 PRK11657 dsbG disulfide isomer 93.3 0.74 1.6E-05 41.8 9.6 83 155-243 116-248 (251)
378 PHA03050 glutaredoxin; Provisi 93.2 0.44 9.5E-06 37.0 6.9 54 160-216 15-75 (108)
379 TIGR02189 GlrX-like_plant Glut 92.9 0.28 6E-06 37.4 5.4 51 160-216 10-67 (99)
380 PRK10329 glutaredoxin-like pro 92.9 0.45 9.8E-06 34.7 6.2 72 160-247 3-77 (81)
381 PRK13190 putative peroxiredoxi 92.7 0.92 2E-05 39.7 9.1 90 156-246 27-153 (202)
382 PRK10382 alkyl hydroperoxide r 92.5 0.14 3.1E-06 44.2 3.6 32 428-459 31-63 (187)
383 cd03029 GRX_hybridPRX5 Glutare 92.3 0.52 1.1E-05 33.3 5.9 51 160-216 3-56 (72)
384 KOG3170|consensus 92.0 2.5 5.4E-05 36.0 10.1 104 138-245 91-199 (240)
385 COG0695 GrxC Glutaredoxin and 91.9 0.48 1E-05 34.5 5.3 51 160-216 3-59 (80)
386 PRK12759 bifunctional gluaredo 91.8 0.37 8.1E-06 47.2 6.1 51 38-94 4-66 (410)
387 COG1331 Highly conserved prote 91.5 0.54 1.2E-05 47.9 6.9 78 21-99 31-120 (667)
388 KOG2640|consensus 91.4 0.11 2.4E-06 47.3 1.7 87 155-247 75-162 (319)
389 PRK15000 peroxidase; Provision 91.2 0.24 5.3E-06 43.3 3.8 33 427-459 33-66 (200)
390 TIGR00365 monothiol glutaredox 91.2 1.2 2.5E-05 33.8 7.0 45 166-216 25-73 (97)
391 PRK10954 periplasmic protein d 90.9 0.32 6.9E-06 42.9 4.3 41 34-74 37-80 (207)
392 cd03016 PRX_1cys Peroxiredoxin 90.7 1.9 4.1E-05 37.8 8.9 39 158-196 28-67 (203)
393 PRK10638 glutaredoxin 3; Provi 90.0 1 2.2E-05 32.9 5.7 51 160-216 4-58 (83)
394 TIGR02654 circ_KaiB circadian 89.7 1.7 3.8E-05 31.8 6.4 75 35-110 3-78 (87)
395 PRK09301 circadian clock prote 88.5 2.2 4.7E-05 32.3 6.4 76 34-110 5-81 (103)
396 cd02974 AhpF_NTD_N Alkyl hydro 88.4 6.3 0.00014 29.6 8.9 74 33-119 18-92 (94)
397 PTZ00253 tryparedoxin peroxida 88.3 0.55 1.2E-05 41.1 3.7 32 428-459 36-68 (199)
398 cd03070 PDI_b_ERp44 PDIb famil 88.2 5 0.00011 29.9 8.1 72 154-235 14-85 (91)
399 PRK10954 periplasmic protein d 88.2 0.37 8.1E-06 42.4 2.6 29 429-457 38-69 (207)
400 cd03028 GRX_PICOT_like Glutare 88.1 1.8 3.8E-05 32.3 5.9 45 166-216 21-69 (90)
401 PRK13191 putative peroxiredoxi 88.1 0.59 1.3E-05 41.4 3.8 32 428-459 33-65 (215)
402 PRK10824 glutaredoxin-4; Provi 87.4 1.4 3E-05 34.5 5.0 45 166-216 28-76 (115)
403 PTZ00137 2-Cys peroxiredoxin; 87.3 0.69 1.5E-05 42.1 3.8 32 428-459 98-130 (261)
404 cd03023 DsbA_Com1_like DsbA fa 86.8 1.6 3.4E-05 36.0 5.6 38 155-193 4-41 (154)
405 PRK13189 peroxiredoxin; Provis 86.8 0.76 1.7E-05 40.9 3.7 33 427-459 34-67 (222)
406 KOG3171|consensus 86.7 5.2 0.00011 34.5 8.2 106 139-247 139-251 (273)
407 PF00837 T4_deiodinase: Iodoth 86.3 1.5 3.3E-05 38.8 5.1 64 12-76 78-144 (237)
408 PF13462 Thioredoxin_4: Thiore 85.9 2.4 5.3E-05 35.3 6.3 42 155-196 11-54 (162)
409 cd03019 DsbA_DsbA DsbA family, 85.9 1.4 3.1E-05 37.4 4.9 40 155-194 14-53 (178)
410 PF07689 KaiB: KaiB domain; I 84.6 0.84 1.8E-05 33.2 2.4 55 40-94 2-57 (82)
411 PF01323 DSBA: DSBA-like thior 84.5 9.1 0.0002 32.9 9.4 36 38-73 2-38 (193)
412 PRK13599 putative peroxiredoxi 83.4 1.1 2.4E-05 39.6 3.2 32 428-459 28-60 (215)
413 cd03013 PRX5_like Peroxiredoxi 83.2 3.3 7.2E-05 34.5 5.8 56 35-90 30-93 (155)
414 cd03031 GRX_GRX_like Glutaredo 82.7 4.6 0.0001 33.2 6.2 51 38-94 2-66 (147)
415 COG1651 DsbG Protein-disulfide 82.2 10 0.00022 34.3 9.1 37 79-120 206-242 (244)
416 KOG1752|consensus 81.6 5.7 0.00012 30.4 6.0 54 159-216 15-73 (104)
417 cd02990 UAS_FAF1 UAS family, F 80.9 16 0.00035 29.6 8.6 91 31-121 18-133 (136)
418 COG1225 Bcp Peroxiredoxin [Pos 80.7 5.3 0.00011 33.2 5.9 58 33-91 29-91 (157)
419 cd03060 GST_N_Omega_like GST_N 80.5 8 0.00017 27.0 6.2 52 39-94 2-54 (71)
420 COG4545 Glutaredoxin-related p 79.7 2.9 6.2E-05 29.3 3.3 55 39-100 5-75 (85)
421 PRK12759 bifunctional gluaredo 78.9 4.6 0.0001 39.7 6.0 51 160-216 4-66 (410)
422 PF00837 T4_deiodinase: Iodoth 75.0 5.4 0.00012 35.4 4.7 64 132-196 76-142 (237)
423 cd02977 ArsC_family Arsenate R 74.9 4.6 0.0001 31.0 3.9 34 38-77 1-34 (105)
424 TIGR01617 arsC_related transcr 71.9 7.5 0.00016 30.5 4.5 34 39-78 2-35 (117)
425 PHA03075 glutaredoxin-like pro 71.1 8.6 0.00019 29.7 4.3 36 35-74 2-37 (123)
426 KOG2792|consensus 70.8 31 0.00067 31.0 8.2 89 34-123 139-277 (280)
427 cd00570 GST_N_family Glutathio 70.5 16 0.00034 24.6 5.6 52 39-94 2-55 (71)
428 PF13417 GST_N_3: Glutathione 69.8 26 0.00056 24.7 6.6 69 40-121 1-71 (75)
429 cd03041 GST_N_2GST_N GST_N fam 69.3 26 0.00057 24.8 6.6 71 38-120 2-76 (77)
430 cd03036 ArsC_like Arsenate Red 69.3 7.9 0.00017 30.1 4.0 52 39-96 2-57 (111)
431 TIGR02742 TrbC_Ftype type-F co 68.6 7.3 0.00016 31.2 3.7 44 76-119 59-113 (130)
432 COG3019 Predicted metal-bindin 68.1 14 0.0003 29.7 5.0 75 35-120 25-103 (149)
433 cd03035 ArsC_Yffb Arsenate Red 67.8 5.5 0.00012 30.7 2.8 35 38-78 1-35 (105)
434 cd03051 GST_N_GTT2_like GST_N 66.6 23 0.0005 24.5 5.8 52 39-94 2-57 (74)
435 cd03037 GST_N_GRX2 GST_N famil 66.4 17 0.00037 25.2 5.0 52 39-94 2-53 (71)
436 cd03013 PRX5_like Peroxiredoxi 65.8 7.8 0.00017 32.2 3.6 32 428-459 29-62 (155)
437 KOG2507|consensus 64.9 36 0.00077 32.9 7.9 91 32-122 16-112 (506)
438 PRK01655 spxA transcriptional 64.5 12 0.00026 30.1 4.3 35 38-78 2-36 (131)
439 cd03040 GST_N_mPGES2 GST_N fam 64.2 27 0.00058 24.6 5.8 75 38-121 2-76 (77)
440 cd03060 GST_N_Omega_like GST_N 63.5 4.7 0.0001 28.2 1.6 23 433-455 2-24 (71)
441 COG1999 Uncharacterized protei 61.1 32 0.00069 30.2 6.7 62 33-94 66-136 (207)
442 COG0278 Glutaredoxin-related p 60.8 24 0.00052 26.6 4.8 63 26-94 8-77 (105)
443 PF09673 TrbC_Ftype: Type-F co 60.8 22 0.00047 27.8 5.0 23 75-97 58-80 (113)
444 PRK12559 transcriptional regul 59.4 16 0.00035 29.3 4.2 35 38-78 2-36 (131)
445 cd03059 GST_N_SspA GST_N famil 58.7 36 0.00077 23.5 5.6 70 38-119 1-71 (73)
446 cd02978 KaiB_like KaiB-like fa 58.3 48 0.001 23.5 5.8 60 160-219 4-64 (72)
447 cd03031 GRX_GRX_like Glutaredo 57.8 36 0.00079 28.0 6.0 51 160-216 2-66 (147)
448 cd03055 GST_N_Omega GST_N fami 57.4 50 0.0011 24.2 6.3 53 37-94 18-72 (89)
449 PF13778 DUF4174: Domain of un 56.9 94 0.002 24.4 8.7 86 34-119 9-110 (118)
450 cd03032 ArsC_Spx Arsenate Redu 56.1 26 0.00055 27.4 4.8 34 38-77 2-35 (115)
451 TIGR02742 TrbC_Ftype type-F co 55.4 20 0.00043 28.8 4.0 49 198-246 59-114 (130)
452 COG3531 Predicted protein-disu 55.4 18 0.00039 31.0 3.8 44 78-121 164-209 (212)
453 PF09673 TrbC_Ftype: Type-F co 53.8 48 0.001 25.8 5.9 45 173-219 36-80 (113)
454 cd02977 ArsC_family Arsenate R 53.7 17 0.00036 27.8 3.3 20 161-180 2-21 (105)
455 COG1225 Bcp Peroxiredoxin [Pos 53.0 53 0.0011 27.3 6.2 54 156-209 30-88 (157)
456 cd03045 GST_N_Delta_Epsilon GS 52.4 65 0.0014 22.3 6.1 52 39-94 2-57 (74)
457 cd03074 PDI_b'_Calsequestrin_C 47.9 1.3E+02 0.0027 23.2 8.9 101 19-120 4-119 (120)
458 COG2761 FrnE Predicted dithiol 47.7 36 0.00078 30.1 4.7 42 80-125 176-217 (225)
459 COG3019 Predicted metal-bindin 47.6 1.5E+02 0.0033 24.0 7.9 74 158-246 26-103 (149)
460 TIGR02654 circ_KaiB circadian 46.7 98 0.0021 22.8 6.0 72 159-235 5-77 (87)
461 PF13743 Thioredoxin_5: Thiore 45.2 37 0.0008 28.9 4.4 33 162-194 2-34 (176)
462 PF02630 SCO1-SenC: SCO1/SenC; 43.0 80 0.0017 26.7 6.2 43 33-75 51-97 (174)
463 cd03025 DsbA_FrnE_like DsbA fa 42.7 34 0.00074 29.3 4.0 28 38-65 3-30 (193)
464 PRK13344 spxA transcriptional 42.0 31 0.00067 27.8 3.2 35 38-78 2-36 (132)
465 PRK09301 circadian clock prote 42.0 1.2E+02 0.0026 23.2 6.0 73 158-235 7-80 (103)
466 cd03040 GST_N_mPGES2 GST_N fam 41.3 20 0.00043 25.3 1.9 23 432-454 2-24 (77)
467 PF06053 DUF929: Domain of unk 39.9 91 0.002 28.2 6.1 59 31-96 55-113 (249)
468 PHA03075 glutaredoxin-like pro 39.2 57 0.0012 25.4 4.0 35 157-195 2-36 (123)
469 cd03033 ArsC_15kD Arsenate Red 38.1 42 0.0009 26.2 3.3 34 38-77 2-35 (113)
470 COG3634 AhpF Alkyl hydroperoxi 37.2 3.9E+02 0.0084 25.7 15.5 176 35-244 19-195 (520)
471 COG0386 BtuE Glutathione perox 36.9 42 0.0009 27.7 3.1 29 428-460 25-53 (162)
472 PRK13730 conjugal transfer pil 35.9 59 0.0013 28.2 4.1 42 77-119 151-192 (212)
473 cd03056 GST_N_4 GST_N family, 35.2 1.4E+02 0.0031 20.2 5.8 52 39-94 2-57 (73)
474 PF04134 DUF393: Protein of un 35.2 56 0.0012 25.2 3.7 69 41-113 2-73 (114)
475 PRK13730 conjugal transfer pil 33.5 76 0.0017 27.5 4.3 43 198-245 150-192 (212)
476 COG3011 Predicted thiol-disulf 32.9 1.6E+02 0.0034 23.9 5.8 64 32-97 4-68 (137)
477 COG1651 DsbG Protein-disulfide 32.4 41 0.00089 30.2 2.9 25 429-453 85-109 (244)
478 PF04592 SelP_N: Selenoprotein 30.6 84 0.0018 28.0 4.2 55 19-75 13-71 (238)
479 cd03024 DsbA_FrnE DsbA family, 29.1 57 0.0012 28.1 3.2 35 79-117 166-200 (201)
480 TIGR00014 arsC arsenate reduct 28.8 79 0.0017 24.6 3.6 33 39-77 2-34 (114)
481 PF15468 DUF4636: Domain of un 28.3 22 0.00048 30.7 0.3 11 437-447 195-205 (243)
482 COG1331 Highly conserved prote 28.1 1.1E+02 0.0023 32.0 5.1 80 140-220 28-118 (667)
483 COG1393 ArsC Arsenate reductas 27.9 79 0.0017 24.8 3.4 20 38-57 3-22 (117)
484 PRK01655 spxA transcriptional 27.6 98 0.0021 24.8 4.0 21 160-180 2-22 (131)
485 PF13912 zf-C2H2_6: C2H2-type 27.0 31 0.00067 18.5 0.7 22 440-461 4-25 (27)
486 cd03052 GST_N_GDAP1 GST_N fami 26.5 2.3E+02 0.0049 19.7 5.7 51 39-93 2-56 (73)
487 cd03022 DsbA_HCCA_Iso DsbA fam 26.3 62 0.0013 27.6 2.8 37 76-117 155-191 (192)
488 cd03034 ArsC_ArsC Arsenate Red 26.1 70 0.0015 24.8 2.8 33 39-77 2-34 (112)
489 PF00255 GSHPx: Glutathione pe 25.8 2.6E+02 0.0057 21.6 5.8 43 33-76 20-63 (108)
490 PF04134 DUF393: Protein of un 24.8 93 0.002 23.9 3.4 45 163-209 2-46 (114)
491 PF06953 ArsD: Arsenical resis 24.3 1.6E+02 0.0035 23.3 4.5 53 66-121 40-102 (123)
492 COG0386 BtuE Glutathione perox 24.2 3.8E+02 0.0082 22.3 6.6 43 33-76 24-67 (162)
493 COG0295 Cdd Cytidine deaminase 23.7 47 0.001 26.7 1.4 13 45-57 87-99 (134)
494 TIGR02743 TraW type-F conjugat 23.1 99 0.0021 27.0 3.4 34 56-94 158-191 (202)
495 COG3634 AhpF Alkyl hydroperoxi 23.0 3.1E+02 0.0068 26.3 6.7 94 19-118 101-195 (520)
496 PF09822 ABC_transp_aux: ABC-t 23.0 5.8E+02 0.013 23.2 10.2 75 15-90 6-90 (271)
497 PF07689 KaiB: KaiB domain; I 22.9 48 0.001 24.1 1.2 48 171-218 11-59 (82)
498 KOG1364|consensus 22.8 1.6E+02 0.0035 27.8 4.8 59 66-124 132-192 (356)
499 PF13778 DUF4174: Domain of un 22.8 3.8E+02 0.0081 21.0 9.0 76 290-366 24-111 (118)
500 cd02974 AhpF_NTD_N Alkyl hydro 22.5 3.4E+02 0.0073 20.3 9.1 73 156-244 19-91 (94)
No 1
>KOG0190|consensus
Probab=100.00 E-value=1e-68 Score=505.86 Aligned_cols=386 Identities=28% Similarity=0.460 Sum_probs=319.8
Q ss_pred CCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCcc
Q psy17502 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFP 90 (461)
Q Consensus 14 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P 90 (461)
..++|++||.+||++ ++..++++||.||||||+||+++.|+|+++|+.++. .+.+++|||+++.++|.+|+|+|||
T Consensus 23 ~~~~Vl~Lt~dnf~~-~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKE-TINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHH-HhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 468899999999999 999999999999999999999999999999999976 5999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcC-hhhhhhhhhcCCCeEEEEEeCCCCh
Q psy17502 91 TVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELT-DSNFEKLVYNSDDIWLVEFFAPWCG 169 (461)
Q Consensus 91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~ 169 (461)
||.+|++|.....|.|.+++++|+.||+++..+ ++..+. .++...+ +..++.++|+|+.+-
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gP---------------a~~~l~~~~~a~~~-l~~~~~~vig~F~d~-- 163 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSGP---------------ASKTLKTVDEAEEF-LSKKDVVVIGFFKDL-- 163 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhccCC---------------CceecccHHHHHhh-ccCCceEEEEEeccc--
Confidence 999999997789999999999999999998743 455665 4555554 566888999999874
Q ss_pred hhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccc--ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 170 HCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRG--YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 170 ~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~--~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
......|..+|..+++.+.|++ +.+.+++++++... .|.++++++.+ +....|+|.++.+.|.+||..+.
T Consensus 164 --~~~~~~~~~~a~~l~~d~~F~~---ts~~~~~~~~~~~~~~~~~i~l~kk~d---~~~~~~~~~~~~~~l~~Fi~~~~ 235 (493)
T KOG0190|consen 164 --ESLAESFFDAASKLRDDYKFAH---TSDSDVAKKLELNTEGTFPIVLFKKFD---ELLVKYDGSFTPELLKKFIQENS 235 (493)
T ss_pred --ccchHHHHHHHHhccccceeec---cCcHhHHhhccCCCCCcceEEeccccc---cchhhcccccCHHHHHHHHHHhc
Confidence 2223678888888889999995 46778888888763 34588888774 35666789999999999999877
Q ss_pred cCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhh
Q psy17502 248 TENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVL 327 (461)
Q Consensus 248 ~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~l 327 (461)
.|++..++.......+...-...++++.. ......+.++..++++|++|++++ .|+.+|...+++.++.|
T Consensus 236 -----~plv~~ft~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~~~~vAk~f~~~l-~Fi~~d~e~~~~~~~~~ 305 (493)
T KOG0190|consen 236 -----LPLVTEFTVANNAKIYSSFVKLGLDFFVF----FKCNRFEELRKKFEEVAKKFKGKL-RFILIDPESFARVLEFF 305 (493)
T ss_pred -----ccccceecccccceeeccccccceeEEec----cccccHHHHHHHHHHHHHhcccce-EEEEEChHHhhHHHHhc
Confidence 89999998876665554433333444322 234468899999999999999986 77777877788899999
Q ss_pred CCCCCCCc-cEEEEccCccccccCCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccC
Q psy17502 328 EIGGFGYP-AMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLS 406 (461)
Q Consensus 328 gl~~~~~P-~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~ 406 (461)
|+.....| .+++.+....||.+..++++.++|+.|+.+++.|++ +|++|||||| ++||+. |+ +
T Consensus 306 Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~-~p~~kSqpiP-----e~~~~~----pV------k 369 (493)
T KOG0190|consen 306 GLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKV-KPHLKSQPIP-----EDNDRS----PV------K 369 (493)
T ss_pred CcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCcc-ccccccCCCC-----cccccC----Ce------E
Confidence 99976777 444555555899888888999999999999999999 5999999999 455544 32 3
Q ss_pred ccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502 407 DVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 407 ~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~ 459 (461)
.+ ++ +||+++|+|++|||||+||||||||||+|+|+|+|||++|++
T Consensus 370 vv-Vg------knfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~ 415 (493)
T KOG0190|consen 370 VV-VG------KNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD 415 (493)
T ss_pred EE-ee------cCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC
Confidence 33 33 799999999999999999999999999999999999999986
No 2
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=2.8e-49 Score=396.08 Aligned_cols=386 Identities=27% Similarity=0.449 Sum_probs=309.2
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFPTV 92 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P~l 92 (461)
++|++||+++|++ +++++++++|.|||+||++|+++.|.|.++++.+.+ ++.|+.|||++++++|++++|.++||+
T Consensus 1 ~~v~~l~~~~~~~-~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 1 EDVLVLTKDNFDD-FIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTL 79 (462)
T ss_pred CCceECCHHHHHH-HHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEE
Confidence 4689999999999 788889999999999999999999999999998864 499999999999999999999999999
Q ss_pred EEEcCCCC-CccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcC-hhhhhhhhhcCCCeEEEEEeCCCChh
Q psy17502 93 KIFSDKRN-PTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELT-DSNFEKLVYNSDDIWLVEFFAPWCGH 170 (461)
Q Consensus 93 ~~~~~g~~-~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~ 170 (461)
++|++|+. ...|.|.++.+.+.+|+.+.+. +++..++ .++++.++ ..+.+.+|+|+...
T Consensus 80 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~---------------~~~~~i~~~~~~~~~~-~~~~~~vi~~~~~~--- 140 (462)
T TIGR01130 80 KIFRNGEDSVSDYNGPRDADGIVKYMKKQSG---------------PAVKEIETVADLEAFL-ADDDVVVIGFFKDL--- 140 (462)
T ss_pred EEEeCCccceeEecCCCCHHHHHHHHHHhcC---------------CCceeecCHHHHHHHH-hcCCcEEEEEECCC---
Confidence 99998876 6899999999999999998873 3355664 67777765 55778888888652
Q ss_pred hhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC--CHHHHHHHHHhhcc
Q psy17502 171 CKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR--TSQDIVTWALNKYT 248 (461)
Q Consensus 171 c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~--~~~~i~~fi~~~~~ 248 (461)
.......|.++|..+++.+.+... ..+..++..++... |.+.+|+..... .....|.|+. +.++|..||..+.
T Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~fi~~~~- 215 (462)
T TIGR01130 141 DSELNDTFLSVAEKLRDVYFFFAH--SSDVAAFAKLGAFP-DSVVLFKPKDED-EKFSKVDGEMDTDVSDLEKFIRAES- 215 (462)
T ss_pred CcHHHHHHHHHHHHhhhccceEEe--cCCHHHHhhcCCCC-CcEEEecccccc-cccccccCcccCCHHHHHHHHHHcC-
Confidence 357788999999999876663322 23456677788763 777777754221 1223567764 5689999999877
Q ss_pred CCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccC-cceEEEecccccchhHHHhh
Q psy17502 249 ENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQ-KVWGWIWSEAVAQPDLENVL 327 (461)
Q Consensus 249 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~-~~f~~v~~d~~~~~~~~~~l 327 (461)
.|.+.+++..+....+..+ +.+++++... ......+.+.+.++++|++|++ .+ .|+++|......++..+
T Consensus 216 ----~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~i-~f~~~d~~~~~~~~~~~ 286 (462)
T TIGR01130 216 ----LPLVGEFTQETAAKYFESG-PLVVLYYNVD---ESLDPFEELRNRFLEAAKKFRGKFV-NFAVADEEDFGRELEYF 286 (462)
T ss_pred ----CCceEeeCCcchhhHhCCC-CceeEEEEec---CCchHHHHHHHHHHHHHHHCCCCeE-EEEEecHHHhHHHHHHc
Confidence 8999999877665554443 5555554321 1222357888999999999997 54 78888877788899999
Q ss_pred CCCCCCCccEEEEccCc-cccccCCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccC
Q psy17502 328 EIGGFGYPAMAVLNAKK-MKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLS 406 (461)
Q Consensus 328 gl~~~~~P~l~i~~~~~-~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~ 406 (461)
|+.+..+|+++|++..+ .+|.+..+.++.++|.+|++++++|+++ +.++|+++|+. +++.+.
T Consensus 287 ~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~-~~~~se~~p~~----------------~~~~v~ 349 (462)
T TIGR01130 287 GLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLK-PYLKSEPIPED----------------DEGPVK 349 (462)
T ss_pred CCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCC-eeeccCCCCcc----------------CCCccE
Confidence 99977799999999876 6777655589999999999999999995 99999999842 223344
Q ss_pred ccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502 407 DVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 407 ~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~ 459 (461)
.++. +||+++|.+++++|||.||||||++|+.+.|.|++||+.+++
T Consensus 350 ~l~~-------~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~ 395 (462)
T TIGR01130 350 VLVG-------KNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD 395 (462)
T ss_pred EeeC-------cCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc
Confidence 4543 699999999999999999999999999999999999999975
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=3.9e-49 Score=395.73 Aligned_cols=368 Identities=27% Similarity=0.444 Sum_probs=291.9
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC---CceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKVGAVNADEEKSLSSSHGVTGFPTV 92 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~P~l 92 (461)
+.+..|+.++|++ ++++++.++|.|||+||++|+++.|+|.++++.+. .++.++.|||++++++|++|+|.++||+
T Consensus 32 ~~v~~l~~~~f~~-~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 32 EHVTVLTDSTFDK-FITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCcEEcchhhHHH-HHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 6799999999999 78888999999999999999999999999998875 3599999999999999999999999999
Q ss_pred EEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhh
Q psy17502 93 KIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCK 172 (461)
Q Consensus 93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~ 172 (461)
++|++|+.. .|.|.++.+.|.+|+.+.+. +++..++.........+...+++++++... ..
T Consensus 111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~ 171 (477)
T PTZ00102 111 KFFNKGNPV-NYSGGRTADGIVSWIKKLTG---------------PAVTEVESASEIKLIAKKIFVAFYGEYTSK---DS 171 (477)
T ss_pred EEEECCceE-EecCCCCHHHHHHHHHHhhC---------------CCceeecCHHHHHHhhccCcEEEEEEeccC---Cc
Confidence 999988655 99999999999999999873 345566554333333455566777777654 45
Q ss_pred hhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCC
Q psy17502 173 NLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP 252 (461)
Q Consensus 173 ~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~ 252 (461)
.....|.++|..+++...|+.+... ..|.+.+++.. +....+.+..+.++|.+||..+.
T Consensus 172 ~~~~~f~~~a~~~~~~~~F~~~~~~------------~~~~~~~~~~~----~~~~~~~~~~~~~~l~~fI~~~~----- 230 (477)
T PTZ00102 172 ELYKKFEEVADKHREHAKFFVKKHE------------GKNKIYVLHKD----EEGVELFMGKTKEELEEFVSTES----- 230 (477)
T ss_pred HHHHHHHHHHHhccccceEEEEcCC------------CCCcEEEEecC----CCCcccCCCCCHHHHHHHHHHcC-----
Confidence 7788999999999888888765211 23667888765 23333334458899999999876
Q ss_pred CCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchh-HHHhhCCCC
Q psy17502 253 PPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPD-LENVLEIGG 331 (461)
Q Consensus 253 ~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~-~~~~lgl~~ 331 (461)
.|.+.+++..+....+..+..+ ++++. ..++.+.+.+.++++|++|+++. .|+++|...+.. +++.||+.
T Consensus 231 ~P~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~A~~~~~~~-~f~~vd~~~~~~~~~~~~gi~- 301 (477)
T PTZ00102 231 FPLFAEINAENYRRYISSGKDL--VWFCG-----TTEDYDKYKSVVRKVARKLREKY-AFVWLDTEQFGSHAKEHLLIE- 301 (477)
T ss_pred CCceeecCccchHHHhcCCccE--EEEec-----CHHHHHHHHHHHHHHHHhccCce-EEEEEechhcchhHHHhcCcc-
Confidence 8999999888776655444432 32221 24456678899999999999996 788888777665 78899998
Q ss_pred CCCccEEEEccCccccccCCC---CCCHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccCcc
Q psy17502 332 FGYPAMAVLNAKKMKYSLLKG---PFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDV 408 (461)
Q Consensus 332 ~~~P~l~i~~~~~~k~~~~~~---~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v 408 (461)
.+|++++.+..+ +|.+..+ ..+.++|.+|++++.+|++ +++++|+|+|.. ++.++..+
T Consensus 302 -~~P~~~i~~~~~-~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~-~~~~~se~~p~~----------------~~~~v~~l 362 (477)
T PTZ00102 302 -EFPGLAYQSPAG-RYLLPPAKESFDSVEALIEFFKDVEAGKV-EKSIKSEPIPEE----------------QDGPVKVV 362 (477)
T ss_pred -cCceEEEEcCCc-ccCCCccccccCCHHHHHHHHHHHhCCCC-CcccccCCCCCC----------------CCCCeEEe
Confidence 589999887543 6654332 3689999999999999999 599999999842 22334445
Q ss_pred ccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502 409 DLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 409 ~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+. +||+++|.+++++|||.||||||+||++++|+|+++|+.+++
T Consensus 363 ~~-------~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~ 406 (477)
T PTZ00102 363 VG-------NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD 406 (477)
T ss_pred cc-------cchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc
Confidence 43 699999999999999999999999999999999999999864
No 4
>KOG0912|consensus
Probab=100.00 E-value=9.3e-31 Score=226.69 Aligned_cols=322 Identities=19% Similarity=0.301 Sum_probs=233.8
Q ss_pred cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC-----CceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-----GVVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95 (461)
Q Consensus 21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~-----~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 95 (461)
|+.+|++. ++..+..++|.|||.||..++.++|.|+++|..++ +++.+|.|||+.+..++.+|.|..|||+.+|
T Consensus 1 lt~~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 1 LTSENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred CccccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 46789998 89999999999999999999999999999998763 4799999999999999999999999999999
Q ss_pred cCCCCCc-cccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEc-ChhhhhhhhhcCCCeEEEEEeCCCChhhhh
Q psy17502 96 SDKRNPT-PYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVEL-TDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173 (461)
Q Consensus 96 ~~g~~~~-~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~ 173 (461)
++|.... +|+|.|+++++.+||.++....+. +. +-.++.... ...+-.+|+++... ...
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~---------------Ef~sl~~l~n~~-~p~K~~vIgyF~~k---dsp 140 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPIN---------------EFESLDQLQNLD-IPSKRTVIGYFPSK---DSP 140 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccHHH---------------HHHhHHHHHhhh-ccccceEEEEeccC---CCc
Confidence 9997665 899999999999999999854432 33 223344332 32444566666533 345
Q ss_pred hhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC-CHHHHHHHHHhhccCCCC
Q psy17502 174 LEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR-TSQDIVTWALNKYTENVP 252 (461)
Q Consensus 174 ~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~-~~~~i~~fi~~~~~~~~~ 252 (461)
....+.++|..+++...|..-- .++.....-.+.+ +++|+++.. .....|.|.+ +.+.++.||.+..
T Consensus 141 ey~~~~kva~~lr~dc~f~V~~----gD~~~~~~~~~~~-~~~f~pd~~--~~~~~f~G~~~nf~el~~Wi~dKc----- 208 (375)
T KOG0912|consen 141 EYDNLRKVASLLRDDCVFLVGF----GDLLKPHEPPGKN-ILVFDPDHS--EPNHEFLGSMTNFDELKQWIQDKC----- 208 (375)
T ss_pred hHHHHHHHHHHHhhccEEEeec----cccccCCCCCCCc-eEEeCCCcC--CcCcccccccccHHHHHHHHHhcc-----
Confidence 6788999999999876664310 1111222222222 566665522 2233699985 7899999999977
Q ss_pred CCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc--eEEEecccccchhHHHhhCCC
Q psy17502 253 PPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV--WGWIWSEAVAQPDLENVLEIG 330 (461)
Q Consensus 253 ~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~--f~~v~~d~~~~~~~~~~lgl~ 330 (461)
.|.|+++|-++.-+--.++.|.++++..++ +.+.....-..++++..+.. ++++..|+......+..||-+
T Consensus 209 vpLVREiTFeN~EELtEEGlPflILf~~kd-------D~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs 281 (375)
T KOG0912|consen 209 VPLVREITFENAEELTEEGLPFLILFRKKD-------DKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKS 281 (375)
T ss_pred hhhhhhhhhccHHHHhhcCCceEEEEecCC-------cccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCC
Confidence 899999987765544446778877765443 22223233344555554332 688899988888889999999
Q ss_pred CCCCccEEEEccCcc-ccccCCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCC
Q psy17502 331 GFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALP 382 (461)
Q Consensus 331 ~~~~P~l~i~~~~~~-k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP 382 (461)
..++|.|+|-+...+ -++.+++-+.+..|.+|+.++.+|+++ ...--.+-|
T Consensus 282 ~~DLPviaIDsF~Hmylfp~f~di~~pGkLkqFv~DL~sgklH-refH~~~d~ 333 (375)
T KOG0912|consen 282 PDDLPVIAIDSFRHMYLFPDFNDINIPGKLKQFVADLHSGKLH-REFHEGPDP 333 (375)
T ss_pred cccCcEEEeeccceeeecCchhhhcCccHHHHHHHHHhCchhh-HHhhcCCCC
Confidence 889999999877652 333344556788999999999999997 444333333
No 5
>KOG0191|consensus
Probab=99.97 E-value=9.1e-30 Score=246.09 Aligned_cols=237 Identities=47% Similarity=0.901 Sum_probs=204.8
Q ss_pred cCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCcc
Q psy17502 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFP 90 (461)
Q Consensus 11 ~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 90 (461)
+.........++..+|...+.....+++|.||+|||+||+.+.|+|.+++..+++++.++.|||+.++++|++|+|+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfP 103 (383)
T KOG0191|consen 24 LYLASGVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFP 103 (383)
T ss_pred hhccccchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCc
Confidence 33444556666777777767888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCC-ceeEcChhhhhhhhhcCCCeEEEEEeCCCCh
Q psy17502 91 TVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSK-AVVELTDSNFEKLVYNSDDIWLVEFFAPWCG 169 (461)
Q Consensus 91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~ 169 (461)
|+.+|..|..+..|.|.++.+.+.+|+...+.+..... .. .+..++..++...+.+.+..++|.||+|||+
T Consensus 104 tl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~ 175 (383)
T KOG0191|consen 104 TLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKL--------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCG 175 (383)
T ss_pred EEEEEcCCCceeeccCcccHHHHHHHHHHhhccccccc--------cCCceEEccccchhhhhhccCcceEEEEeccccH
Confidence 99999988678899999999999999999886655421 23 4888999999998888899999999999999
Q ss_pred hhhhhhHHHHHHHHHhc--CceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcC-cccccCCCCHHHHHHHHHhh
Q psy17502 170 HCKNLEPHWEKAASELE--GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASD-AQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 170 ~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~-~~~y~g~~~~~~i~~fi~~~ 246 (461)
+|+.+.+.|.+++..+. ..+.++.+||+....++.++++.++|++++|+++. . ...|.|.++.+.|.+|+...
T Consensus 176 ~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~----~~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 176 HCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGE----EDIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred HhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCC----cccccccccccHHHHHHHHHhh
Confidence 99999999999999886 57999999999899999999999999999999983 4 56678899999999999987
Q ss_pred ccCCCCCCcceee
Q psy17502 247 YTENVPPPEIKQI 259 (461)
Q Consensus 247 ~~~~~~~p~v~~~ 259 (461)
.......+.+.++
T Consensus 252 ~~~~~~~~~~~~~ 264 (383)
T KOG0191|consen 252 ERRNIPEPELKEI 264 (383)
T ss_pred cCCCCCCcccccc
Confidence 6443223334333
No 6
>KOG4277|consensus
Probab=99.96 E-value=3.9e-28 Score=209.95 Aligned_cols=311 Identities=23% Similarity=0.391 Sum_probs=216.9
Q ss_pred ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 94 (461)
|.+|++ .|.+ .+..+.|+|.||||||+||+++.|.|.++..++++ .|.+++.||+.-+.++.++||+||||+.+
T Consensus 30 VeDLdd-kFkd--nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~ 106 (468)
T KOG4277|consen 30 VEDLDD-KFKD--NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKF 106 (468)
T ss_pred hhhhhH-Hhhh--cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEE
Confidence 555543 3444 45667999999999999999999999999988875 49999999999999999999999999999
Q ss_pred EcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcCh--hhhhhhhhcCCCeEEEEEeCCCChhhh
Q psy17502 95 FSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTD--SNFEKLVYNSDDIWLVEFFAPWCGHCK 172 (461)
Q Consensus 95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~~~~~~~~~v~f~~~~c~~c~ 172 (461)
|+++ ....|+|.++.++|++|..+...+. +..+++ ..++.+ ...+.+.+|+|-+. ..
T Consensus 107 ~kgd-~a~dYRG~R~Kd~iieFAhR~a~ai---------------I~pi~enQ~~fehl-q~Rhq~ffVf~Gtg----e~ 165 (468)
T KOG4277|consen 107 FKGD-HAIDYRGGREKDAIIEFAHRCAAAI---------------IEPINENQIEFEHL-QARHQPFFVFFGTG----EG 165 (468)
T ss_pred ecCC-eeeecCCCccHHHHHHHHHhcccce---------------eeecChhHHHHHHH-hhccCceEEEEeCC----CC
Confidence 9975 7789999999999999999876332 334544 334433 45678888888754 34
Q ss_pred hhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcC-cccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCC
Q psy17502 173 NLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFN-IRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251 (461)
Q Consensus 173 ~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~-i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~ 251 (461)
.+...|..+|...-.-..|.. ..++++..++ .+..|.+.+|++. ....| ...+.+++.+||.+..
T Consensus 166 PL~d~fidAASe~~~~a~FfS----aseeVaPe~~~~kempaV~VFKDe-----tf~i~-de~dd~dLseWinRER---- 231 (468)
T KOG4277|consen 166 PLFDAFIDAASEKFSVARFFS----ASEEVAPEENDAKEMPAVAVFKDE-----TFEIE-DEGDDEDLSEWINRER---- 231 (468)
T ss_pred cHHHHHHHHhhhheeeeeeec----cccccCCcccchhhccceEEEccc-----eeEEE-ecCchhHHHHHHhHhh----
Confidence 667777777765433333332 2344444443 4557999999976 23332 2234688999998765
Q ss_pred CCCcceeecCHHHHHHHhcCCCeEEEEEeCCcc-ccChhhHHHHHHHHHHHHHhccCcc-----eEEEecccccchhHHH
Q psy17502 252 PPPEIKQIVSEATFKEACEDHPLCIVAVLPHIL-DCQSSCRNNYLEILQKLGDKYKQKV-----WGWIWSEAVAQPDLEN 325 (461)
Q Consensus 252 ~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~va~~~~~~~-----f~~v~~d~~~~~~~~~ 325 (461)
.|.+...+..... ++....+++++.+...-. ..++.+...+....+++|+.+|+.. |.|.+.|+. .+++
T Consensus 232 -f~~fLa~dgflL~-EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGn---D~~n 306 (468)
T KOG4277|consen 232 -FPGFLAADGFLLA-EIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGN---DLAN 306 (468)
T ss_pred -ccchhhcccchHH-HhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchh---HHHH
Confidence 5555544433333 333344455555443211 1245667788899999999999763 778888853 3444
Q ss_pred hhCCCCCCCccEEEEccCccccccCCC---CCCHHHHHHHHHHHhcCCC
Q psy17502 326 VLEIGGFGYPAMAVLNAKKMKYSLLKG---PFSYDGINEFLRDLSYGRG 371 (461)
Q Consensus 326 ~lgl~~~~~P~l~i~~~~~~k~~~~~~---~~~~~~i~~Fi~~~~~Gkl 371 (461)
.+-+..-..|.++|++..+..|.+.+. ..+.++|.+||++-..|-+
T Consensus 307 qilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFientsegI~ 355 (468)
T KOG4277|consen 307 QILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIENTSEGID 355 (468)
T ss_pred HHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHHhccccccc
Confidence 444444457999999988866766433 4578999999999555543
No 7
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.95 E-value=6.6e-25 Score=194.79 Aligned_cols=321 Identities=19% Similarity=0.322 Sum_probs=220.3
Q ss_pred CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHH---h--hHH-HHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCC
Q psy17502 15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQ---S--FKD-EYMKLATALKG-VVKVGAVNADEEKSLSSSHGVT 87 (461)
Q Consensus 15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~---~--~~~-~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~ 87 (461)
.+.|++||.+||.+ ++++.+...|+||.|--++-. + +.. .++-+|+-+.. .|.||.||..++..+++++|+.
T Consensus 33 kDRVi~LneKNfk~-~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 33 KDRVIDLNEKNFKR-ALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp S--CEEE-TTTHHH-HHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred ccceEEcchhHHHH-HHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 46799999999999 899999999999988643221 1 222 34556666654 4999999999999999999999
Q ss_pred CccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhc-CCCeEEEEEeCC
Q psy17502 88 GFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYN-SDDIWLVEFFAP 166 (461)
Q Consensus 88 ~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~ 166 (461)
..+++++|++| ...+|.|.++++.+++|+...+. .+|..++.+.-.+.+.+ ...+.+|+||.+
T Consensus 112 E~~SiyVfkd~-~~IEydG~~saDtLVeFl~dl~e---------------dPVeiIn~~~e~~~Fe~ied~~klIGyFk~ 175 (383)
T PF01216_consen 112 EEGSIYVFKDG-EVIEYDGERSADTLVEFLLDLLE---------------DPVEIINNKHELKAFERIEDDIKLIGYFKS 175 (383)
T ss_dssp STTEEEEEETT-EEEEE-S--SHHHHHHHHHHHHS---------------SSEEEE-SHHHHHHHHH--SS-EEEEE-SS
T ss_pred ccCcEEEEECC-cEEEecCccCHHHHHHHHHHhcc---------------cchhhhcChhhhhhhhhcccceeEEEEeCC
Confidence 99999999987 67899999999999999999983 45766655433222222 447899999987
Q ss_pred CChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC-CCCHHHHHHHHHh
Q psy17502 167 WCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWALN 245 (461)
Q Consensus 167 ~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~fi~~ 245 (461)
. .......|..+|..+.+.|.|..+ .++.+|++++++ .-.+-+|++.. +.+....| +.+.++|.+||.+
T Consensus 176 ~---~s~~yk~FeeAAe~F~p~IkFfAt---fd~~vAk~L~lK-~nev~fyepF~---~~pi~ip~~p~~e~e~~~fi~~ 245 (383)
T PF01216_consen 176 E---DSEHYKEFEEAAEHFQPYIKFFAT---FDKKVAKKLGLK-LNEVDFYEPFM---DEPITIPGKPYTEEELVEFIEE 245 (383)
T ss_dssp T---TSHHHHHHHHHHHHCTTTSEEEEE----SHHHHHHHT-S-TT-EEEE-TTS---SSEEEESSSS--HHHHHHHHHH
T ss_pred C---CcHHHHHHHHHHHhhcCceeEEEE---ecchhhhhcCcc-ccceeeecccc---CCCccCCCCCCCHHHHHHHHHH
Confidence 4 345788999999999999999875 678999999997 78899999885 35666665 4788999999999
Q ss_pred hccCCCCCCcceeecCHHHHHHHhc-CCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc-eEEEecccccchhH
Q psy17502 246 KYTENVPPPEIKQIVSEATFKEACE-DHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQPDL 323 (461)
Q Consensus 246 ~~~~~~~~p~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~~~ 323 (461)
|. .|.++.++..+.+..... -....+++|. +....+-..+++.++++|+...+.. ..++|+|.+.++-+
T Consensus 246 h~-----rptlrkl~~~~m~e~Wedd~~g~hIvaFa----ee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPll 316 (383)
T PF01216_consen 246 HK-----RPTLRKLRPEDMFETWEDDIDGIHIVAFA----EEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLL 316 (383)
T ss_dssp T------S-SEEE--GGGHHHHHHSSSSSEEEEEE------TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHH
T ss_pred hc-----hhHhhhCChhhhhhhhcccCCCceEEEEe----cCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchh
Confidence 87 899999998888776543 2455566653 2334456778899999999988764 78999998887765
Q ss_pred H----HhhCCCCCCCccEEEEccCc--ccc-ccCC--CCCCHHHHHHHHHHHhcCCCC
Q psy17502 324 E----NVLEIGGFGYPAMAVLNAKK--MKY-SLLK--GPFSYDGINEFLRDLSYGRGH 372 (461)
Q Consensus 324 ~----~~lgl~~~~~P~l~i~~~~~--~k~-~~~~--~~~~~~~i~~Fi~~~~~Gkl~ 372 (461)
. +.|||.-. -|.|.+++... ..| .+.. +..|.+.++.||+++++|++.
T Consensus 317 v~yWE~tF~Idl~-~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~ 373 (383)
T PF01216_consen 317 VPYWEKTFGIDLS-RPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKIN 373 (383)
T ss_dssp HHHHHHHHTT-TT-S-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCT
T ss_pred HHHHHhhcCcccc-CCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCC
Confidence 4 45888754 59999999876 233 3332 245899999999999999985
No 8
>KOG0190|consensus
Probab=99.94 E-value=2.8e-25 Score=211.23 Aligned_cols=261 Identities=26% Similarity=0.465 Sum_probs=205.1
Q ss_pred CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCccccc
Q psy17502 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYP 212 (461)
Q Consensus 136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P 212 (461)
....|..|+.++|.+.+ ..+..++|.||||||+||+.+.|.|.++|..++. .+..+.|||+.+.++|.+|+|++||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 35679999999999985 7889999999999999999999999999999974 6999999999999999999999999
Q ss_pred EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHH
Q psy17502 213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRN 292 (461)
Q Consensus 213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 292 (461)
|+.+|++| .....|+|.++++.|+.|++++. .|....+.+......+....+..++.++..... ..
T Consensus 102 TlkiFrnG----~~~~~Y~G~r~adgIv~wl~kq~-----gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~-----~~ 167 (493)
T KOG0190|consen 102 TLKIFRNG----RSAQDYNGPREADGIVKWLKKQS-----GPASKTLKTVDEAEEFLSKKDVVVIGFFKDLES-----LA 167 (493)
T ss_pred eEEEEecC----CcceeccCcccHHHHHHHHHhcc-----CCCceecccHHHHHhhccCCceEEEEEeccccc-----ch
Confidence 99999999 33689999999999999999987 788888999999999998889999998765211 11
Q ss_pred HHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy17502 293 NYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGH 372 (461)
Q Consensus 293 ~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~ 372 (461)
+.+...|...++.. .|... ...++++.+++...+.|.+++++....++..+.+.++.+.|.+||+....+-.
T Consensus 168 ---~~~~~~a~~l~~d~-~F~~t---s~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv- 239 (493)
T KOG0190|consen 168 ---ESFFDAASKLRDDY-KFAHT---SDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLV- 239 (493)
T ss_pred ---HHHHHHHHhccccc-eeecc---CcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhccccc-
Confidence 34556666666664 44422 34667888888744466688887766555556889999999999988753322
Q ss_pred CCCcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHH
Q psy17502 373 TAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMK 452 (461)
Q Consensus 373 ~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~ 452 (461)
.. .+. .++..+..+.=++=+.+|--.-|..-..+.+.|++
T Consensus 240 ---------~~------------------------ft~-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 279 (493)
T KOG0190|consen 240 ---------TE------------------------FTV-------ANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEE 279 (493)
T ss_pred ---------ce------------------------ecc-------cccceeeccccccceeEEeccccccHHHHHHHHHH
Confidence 11 101 13333333334555666777888889999999999
Q ss_pred HHHHHhh
Q psy17502 453 LATALKV 459 (461)
Q Consensus 453 la~~~k~ 459 (461)
+|+.||.
T Consensus 280 vAk~f~~ 286 (493)
T KOG0190|consen 280 VAKKFKG 286 (493)
T ss_pred HHHhccc
Confidence 9999984
No 9
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.93 E-value=7.1e-25 Score=194.60 Aligned_cols=201 Identities=17% Similarity=0.251 Sum_probs=158.6
Q ss_pred CccchhHHHhcCCCeEEEEEEC---CCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502 22 TTSNFDDKVIKSDEVWIVEYYA---PWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97 (461)
Q Consensus 22 ~~~~f~~~~~~~~~~~lv~f~~---~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~ 97 (461)
..+.|.+ -+ ++...++.|++ +||++|+.+.|.++++++.+.+ ++.++.+|.+++++++++|+|.++||+++|++
T Consensus 9 ~~~~~~~-~~-~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~ 86 (215)
T TIGR02187 9 LKELFLK-EL-KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE 86 (215)
T ss_pred HHHHHHH-hc-CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC
Confidence 3455444 23 45566878988 9999999999999999998854 35677777779999999999999999999999
Q ss_pred CCCC-ccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhH
Q psy17502 98 KRNP-TPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP 176 (461)
Q Consensus 98 g~~~-~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~ 176 (461)
|+.. .+|.|..+.+++.+|+...+. ... ....++.+..+.+-...+.+.++.|+++||++|+.+.+
T Consensus 87 g~~~~~~~~G~~~~~~l~~~i~~~~~-~~~------------~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~ 153 (215)
T TIGR02187 87 GKDGGIRYTGIPAGYEFAALIEDIVR-VSQ------------GEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVL 153 (215)
T ss_pred CeeeEEEEeecCCHHHHHHHHHHHHH-hcC------------CCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHH
Confidence 8776 489999999999999987742 111 11245544444332223445556699999999999999
Q ss_pred HHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502 177 HWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 177 ~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
.+.+++... +.+.+..+|.+.+++++++|+|.++|++++++.+ . .+.|....+.+.+|+.+
T Consensus 154 ~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~-----~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 154 MAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGV-----E--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCC-----E--EEECCCCHHHHHHHHHh
Confidence 999998874 6799999999999999999999999999998765 2 28898899999999864
No 10
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=1.1e-24 Score=170.55 Aligned_cols=107 Identities=23% Similarity=0.393 Sum_probs=99.3
Q ss_pred cCCCCCCceEcCccchhHH--HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhH-hhcCCC
Q psy17502 11 LYPSYSDVIKLTTSNFDDK--VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS-SSHGVT 87 (461)
Q Consensus 11 ~~~~~~~v~~l~~~~f~~~--~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~-~~~~i~ 87 (461)
+|+..++|++|+++||++. +++++++++|.||||||++|+.+.|.|+++|+++++.+.|++|||+++.++| ++|+|+
T Consensus 4 ~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~ 83 (113)
T cd03006 4 FFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF 83 (113)
T ss_pred ccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence 5667789999999999983 2688899999999999999999999999999999888999999999999999 589999
Q ss_pred CccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502 88 GFPTVKIFSDKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 88 ~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i 117 (461)
++||+++|++|+....|.|.++.+.|..|+
T Consensus 84 ~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 84 YFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred ccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 999999999998889999999999999874
No 11
>KOG0191|consensus
Probab=99.89 E-value=1.1e-21 Score=189.76 Aligned_cols=280 Identities=29% Similarity=0.535 Sum_probs=198.6
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~ 219 (461)
...++...+...+...+.+++|.||++||++|+.+.+.|.++++.+++.+.++.|||+.+..+|.+|+|.++||+.+|.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~ 110 (383)
T KOG0191|consen 31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP 110 (383)
T ss_pred hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcC
Confidence 33445566666667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCcccccCCCCHHHHHHHHHhhccCCC--CCCc-ceeecCHHHHHHHh-cCCCeEEEEEeCCccccChhhHHHHH
Q psy17502 220 GSRSASDAQEYNGGRTSQDIVTWALNKYTENV--PPPE-IKQIVSEATFKEAC-EDHPLCIVAVLPHILDCQSSCRNNYL 295 (461)
Q Consensus 220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~--~~p~-v~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 295 (461)
+ .....|.|..+.+.+..|+........ ..+. +.+++..+...... ....+.+.++.|+ ....+.+.
T Consensus 111 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPw-----c~~ck~l~ 181 (383)
T KOG0191|consen 111 G----KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPW-----CGHCKKLA 181 (383)
T ss_pred C----CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccc-----cHHhhhcC
Confidence 8 368889999999999999988764322 1233 55554444332222 3445556656676 33445566
Q ss_pred HHHHHHHHhccC-cceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHHhcCCCCCC
Q psy17502 296 EILQKLGDKYKQ-KVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTA 374 (461)
Q Consensus 296 ~~~~~va~~~~~-~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~ 374 (461)
..+.++|..+++ ....+..+|......+++.+++. .+|++.++.........+.+.-+.++|..|+++...-...++
T Consensus 182 ~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~--~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~ 259 (383)
T KOG0191|consen 182 PEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVR--GYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEP 259 (383)
T ss_pred hHHHHHHHHhccCcceEEEeeccchHHHHhhhhccc--CCceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCc
Confidence 788899988874 22466666766677888999998 689998887665412234567799999999999874432111
Q ss_pred CcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHH
Q psy17502 375 PVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454 (461)
Q Consensus 375 ~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la 454 (461)
. +.+.. +++...|. + . +..+|.. .....++.++.||+|||+||..+.|.|+..|
T Consensus 260 ~-----~~~~~------~~~~~~~~--------~-~-----d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (383)
T KOG0191|consen 260 E-----LKEIE------DKDTFSPT--------F-L-----DTAEFLD-SLEKKKNKFVKFYAPWCGHCGGFAPVYEDKA 313 (383)
T ss_pred c-----ccccc------Cccccccc--------h-h-----hhhhhhh-hhHHhhhhHhhhhcchhhcccccchhHHHHH
Confidence 1 11110 00000000 0 0 0001111 1234568899999999999999999999999
Q ss_pred HH
Q psy17502 455 TA 456 (461)
Q Consensus 455 ~~ 456 (461)
..
T Consensus 314 ~~ 315 (383)
T KOG0191|consen 314 EL 315 (383)
T ss_pred hc
Confidence 87
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.89 E-value=1.9e-22 Score=157.08 Aligned_cols=99 Identities=30% Similarity=0.823 Sum_probs=94.1
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
+|++||.++|++ .+.++++++|+||++||++|+++.|.|+++++++++.+.|++|||++++.+|++++|+++||+++|+
T Consensus 2 ~~~~l~~~~f~~-~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDA-AVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHH-HhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 688999999999 6777899999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCccccCCcchhHHHHH
Q psy17502 97 DKRNPTPYQGARTADAIIDV 116 (461)
Q Consensus 97 ~g~~~~~y~g~~~~~~i~~~ 116 (461)
+|+...+|.|.++.+.|.+|
T Consensus 81 ~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCCcccCCCCCCHHHHHhh
Confidence 99888999999999999887
No 13
>PTZ00102 disulphide isomerase; Provisional
Probab=99.88 E-value=8.7e-21 Score=190.60 Aligned_cols=224 Identities=22% Similarity=0.357 Sum_probs=180.2
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh-hHhhcCCCCccEEEEE
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS-LSSSHGVTGFPTVKIF 95 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~P~l~~~ 95 (461)
.+..+|.++|.. ....+.+.++.+ ..+.....+.+.+.++|+++++++.|+.+|+++.+. +++.+|+..+|++.+.
T Consensus 233 ~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~ 309 (477)
T PTZ00102 233 LFAEINAENYRR-YISSGKDLVWFC--GTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQ 309 (477)
T ss_pred ceeecCccchHH-HhcCCccEEEEe--cCHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEEE
Confidence 367788889988 666555443333 256677789999999999999999999999999886 8999999999998887
Q ss_pred cCCCCCccccC----CcchhHHHHHHHHHHhhhhcCC-CCCC-CCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCCh
Q psy17502 96 SDKRNPTPYQG----ARTADAIIDVALEAIRQKVKGG-KSGG-RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCG 169 (461)
Q Consensus 96 ~~g~~~~~y~g----~~~~~~i~~~i~~~~~~~~~~~-~~~~-~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~ 169 (461)
..++. ..+.+ ..+.+.|.+|+........... ++.. ......++..++.++|.+.+.+.+++++|.||++||+
T Consensus 310 ~~~~~-y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~ 388 (477)
T PTZ00102 310 SPAGR-YLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCG 388 (477)
T ss_pred cCCcc-cCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCH
Confidence 63322 22333 3789999999999876543311 1111 1223456888999999998778889999999999999
Q ss_pred hhhhhhHHHHHHHHHhcC--ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 170 HCKNLEPHWEKAASELEG--KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 170 ~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
+|+.+.|.|.++|+.+++ .+.++.+|++.+...+++++++++|++++|+++.+ ....|.|.++.++|.+||.++.
T Consensus 389 ~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~---~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 389 HCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER---TPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred HHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc---ceeEecCcCCHHHHHHHHHHcC
Confidence 999999999999998864 59999999999998999999999999999998742 3567999999999999999876
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.87 E-value=1.3e-21 Score=153.49 Aligned_cols=101 Identities=38% Similarity=0.779 Sum_probs=93.7
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
.+++|+.++|++.+.+.+++++|.||++||++|+.+.|.|+++++++++.+.|+.|||++++++|++++|+++||+++|.
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 57899999999966667789999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-CCCccccCCcc-hhHHHHHH
Q psy17502 97 DK-RNPTPYQGART-ADAIIDVA 117 (461)
Q Consensus 97 ~g-~~~~~y~g~~~-~~~i~~~i 117 (461)
+| +...+|.|..+ .++|.+|+
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 87 78889999987 99998875
No 15
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.86 E-value=2.3e-21 Score=152.93 Aligned_cols=101 Identities=30% Similarity=0.634 Sum_probs=92.6
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC------CceEEEEEecCCchhhHhhcCCCCc
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK------GVVKVGAVNADEEKSLSSSHGVTGF 89 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~------~~v~~~~vd~~~~~~l~~~~~i~~~ 89 (461)
++|++|++++|++ +++.+++++|.||||||++|+++.|.|+++++.++ +++.++.|||++++++|++|+|+++
T Consensus 1 ~~v~~l~~~~f~~-~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~ 79 (108)
T cd02996 1 SEIVSLTSGNIDD-ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKY 79 (108)
T ss_pred CceEEcCHhhHHH-HHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcC
Confidence 4689999999999 78888999999999999999999999999998763 2589999999999999999999999
Q ss_pred cEEEEEcCCC-CCccccCCcchhHHHHHH
Q psy17502 90 PTVKIFSDKR-NPTPYQGARTADAIIDVA 117 (461)
Q Consensus 90 P~l~~~~~g~-~~~~y~g~~~~~~i~~~i 117 (461)
||+++|++|+ ....|.|.++.++|.+||
T Consensus 80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999987 458899999999999885
No 16
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.86 E-value=1.9e-21 Score=150.68 Aligned_cols=99 Identities=21% Similarity=0.343 Sum_probs=90.0
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEEC--CCCH---hHHhhHHHHHHHHHHcCCceEEEEEec-----CCchhhHhhcCC
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYA--PWCG---HCQSFKDEYMKLATALKGVVKVGAVNA-----DEEKSLSSSHGV 86 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~--~~c~---~C~~~~~~~~~~a~~~~~~v~~~~vd~-----~~~~~l~~~~~i 86 (461)
.+++||+.||++ ++++++.+||.||| |||+ +|+++.|++.+++.. |.+++||| .++.+||++|+|
T Consensus 2 g~v~L~~~nF~~-~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFYK-VIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHHH-HHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhCC
Confidence 478999999999 89999999999999 9999 999999999888753 88999999 467889999999
Q ss_pred C--CccEEEEEcCCC--CCccccCC-cchhHHHHHHHHH
Q psy17502 87 T--GFPTVKIFSDKR--NPTPYQGA-RTADAIIDVALEA 120 (461)
Q Consensus 87 ~--~~P~l~~~~~g~--~~~~y~g~-~~~~~i~~~i~~~ 120 (461)
+ +||||++|++|. .+..|.|. ++.++|++||.++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999885 56789997 9999999999875
No 17
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.86 E-value=4.6e-21 Score=150.27 Aligned_cols=102 Identities=37% Similarity=0.671 Sum_probs=96.5
Q ss_pred ceEcCccchhHHHhcC-CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 18 VIKLTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 18 v~~l~~~~f~~~~~~~-~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
|..+|+++|++ .+.+ +++++|+||++||++|+.+.|.|.++++.+.+++.|+.|||++++.+|++|+|.++|++++|+
T Consensus 1 v~~lt~~~f~~-~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVLTDENFEK-FINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEESTTTHHH-HHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEECCHHHHHH-HHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 67899999999 5554 899999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCCCCccccCCcchhHHHHHHHHH
Q psy17502 97 DKRNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 97 ~g~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
+|+...+|.|.++.+.|.+||+++
T Consensus 80 ~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHHHcC
Confidence 998888999999999999999875
No 18
>KOG0910|consensus
Probab=99.85 E-value=2.2e-21 Score=153.74 Aligned_cols=106 Identities=26% Similarity=0.462 Sum_probs=101.6
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 95 (461)
..+..++..+|++.++++..|++|.|||+||++|+.+.|.+++++.++.|++.|++||.+++.+|+.+|+|+.+||+++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 46778899999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccCCcchhHHHHHHHHHH
Q psy17502 96 SDKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 96 ~~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
++|+...++.|..+.+.+.+||.+.+
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 19
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.85 E-value=3.7e-21 Score=151.35 Aligned_cols=108 Identities=18% Similarity=0.305 Sum_probs=94.8
Q ss_pred CCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHh--HH--hhHHHHHHHHHHc--CCceEEEEEecCCchhhHhhcCC
Q psy17502 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGH--CQ--SFKDEYMKLATAL--KGVVKVGAVNADEEKSLSSSHGV 86 (461)
Q Consensus 13 ~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~--C~--~~~~~~~~~a~~~--~~~v~~~~vd~~~~~~l~~~~~i 86 (461)
...+.|++||++||++.+.+++.++++.|+++||++ |+ .+.|.+.++|.++ .+++.|++||++++++||++|||
T Consensus 6 ~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 6 DGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 345689999999999966666668888889999976 99 7788888888887 67899999999999999999999
Q ss_pred CCccEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502 87 TGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 87 ~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
+++||+++|++|+.+. |.|.++.+.|.+|+.+..
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999997655 999999999999998753
No 20
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.85 E-value=1.6e-19 Score=181.06 Aligned_cols=226 Identities=25% Similarity=0.471 Sum_probs=180.0
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEE--CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCC--Ccc
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYY--APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVT--GFP 90 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~--~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~--~~P 90 (461)
..+..+|..++.. ..+.+ +.++.|+ ......|+.+...+.++|+++.+ .+.|+.+|+...+.+++.+|+. .+|
T Consensus 217 p~v~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P 294 (462)
T TIGR01130 217 PLVGEFTQETAAK-YFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFP 294 (462)
T ss_pred CceEeeCCcchhh-HhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCc
Confidence 3467788888888 55544 4444443 44666789999999999999996 8999999999999999999998 699
Q ss_pred EEEEEcCCC-CCccccC-CcchhHHHHHHHHHHhhhhcCCCCCCC--CCCCCceeEcChhhhhhhhhcCCCeEEEEEeCC
Q psy17502 91 TVKIFSDKR-NPTPYQG-ARTADAIIDVALEAIRQKVKGGKSGGR--KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAP 166 (461)
Q Consensus 91 ~l~~~~~g~-~~~~y~g-~~~~~~i~~~i~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~ 166 (461)
+++++...+ ....+.+ ..+.+.|.+|+..............+. ......+..++..+|.+.+.+.+..++|.||++
T Consensus 295 ~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~ 374 (462)
T TIGR01130 295 AVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAP 374 (462)
T ss_pred eEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECC
Confidence 999997332 3344555 788999999999987544432111111 112456788999999998878889999999999
Q ss_pred CChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 167 WCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 167 ~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
||++|+.+.+.|.++|+.+++ .+.|+.+|++.+. +.. +++.++|++++|+.+.+ ..+..|.|..+.++|.+|+
T Consensus 375 wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~~l 450 (462)
T TIGR01130 375 WCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKK--SEPVPYDGDRTLEDFSKFI 450 (462)
T ss_pred CCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCC--cCceEecCcCCHHHHHHHH
Confidence 999999999999999999987 7999999998764 334 99999999999998743 2456799999999999999
Q ss_pred Hhhc
Q psy17502 244 LNKY 247 (461)
Q Consensus 244 ~~~~ 247 (461)
.++.
T Consensus 451 ~~~~ 454 (462)
T TIGR01130 451 AKHA 454 (462)
T ss_pred HhcC
Confidence 8876
No 21
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.83 E-value=3.8e-20 Score=144.19 Aligned_cols=99 Identities=33% Similarity=0.618 Sum_probs=90.0
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 94 (461)
++|++|+.++|++ +++++ ++|.|||+||++|+.+.|.|+++++.+++ ++.++.|||++++.+|++|+|.++||+++
T Consensus 1 ~~v~~l~~~~f~~-~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 1 SNVVELTDSNWTL-VLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred CceEEcChhhHHH-HhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 4689999999998 66443 89999999999999999999999998765 59999999999999999999999999999
Q ss_pred EcCCCCCccccCCcchhHHHHHHH
Q psy17502 95 FSDKRNPTPYQGARTADAIIDVAL 118 (461)
Q Consensus 95 ~~~g~~~~~y~g~~~~~~i~~~i~ 118 (461)
|++|+ ...|.|.++.++|.+|++
T Consensus 78 ~~~g~-~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 78 AKDGV-FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred eCCCC-EEEecCCCCHHHHHHHHh
Confidence 99885 578999999999999986
No 22
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.82 E-value=6.5e-20 Score=145.19 Aligned_cols=101 Identities=47% Similarity=0.856 Sum_probs=92.1
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC--chhhHhhcCCCCccEEEE
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE--EKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~ 94 (461)
.|++|++++|++.+.+.+++++|.||++||++|+++.|.|+++++.+.+.+.++.|||++ ++++|++|+|+++|++++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 378999999999555666789999999999999999999999999998889999999998 889999999999999999
Q ss_pred EcCCC-----CCccccCCcchhHHHHHH
Q psy17502 95 FSDKR-----NPTPYQGARTADAIIDVA 117 (461)
Q Consensus 95 ~~~g~-----~~~~y~g~~~~~~i~~~i 117 (461)
|.+|+ ....|.|.++.+.+.+||
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHHHh
Confidence 99775 467899999999999997
No 23
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.3e-20 Score=161.90 Aligned_cols=109 Identities=30% Similarity=0.577 Sum_probs=102.2
Q ss_pred CCCCceEcCccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccE
Q psy17502 14 SYSDVIKLTTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT 91 (461)
Q Consensus 14 ~~~~v~~l~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~ 91 (461)
....|.++|+.||.+.++++. .|+||+||+|||++|+++.|.+++++.+++|++.+++|||++++.++.+|||+.+|+
T Consensus 21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence 345699999999999777644 499999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502 92 VKIFSDKRNPTPYQGARTADAIIDVALEAIR 122 (461)
Q Consensus 92 l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~ 122 (461)
+++|.+|+.+..|.|....+.+.+|+.++..
T Consensus 101 V~af~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 101 VYAFKDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred EEEeeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 9999999999999999999999999999863
No 24
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.82 E-value=1.7e-19 Score=141.30 Aligned_cols=101 Identities=58% Similarity=1.071 Sum_probs=92.6
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
+|.++++++|.+.+.+.+++++|+||++||++|+++.|.|.++++++.+++.++.+||+++++++++++|+++|++++|.
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 47899999999955566667999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-CCCccccCCcchhHHHHHH
Q psy17502 97 DK-RNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 97 ~g-~~~~~y~g~~~~~~i~~~i 117 (461)
+| .....|.|.++.+.|.+|+
T Consensus 81 ~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 81 AGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCcceeecCCCCCHHHHHHHh
Confidence 77 5567899999999999997
No 25
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.81 E-value=1.1e-19 Score=141.97 Aligned_cols=99 Identities=32% Similarity=0.712 Sum_probs=90.6
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFPTVK 93 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 93 (461)
++++||.++|++ .+.++ .++|.||++||++|+.+.|.|.++++++++ ++.++.|||++++.+|++|+|.++|+++
T Consensus 1 ~~~~l~~~~f~~-~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 1 GVLELTEDNFDH-HIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLL 78 (102)
T ss_pred CeeECCHHHHHH-HhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEE
Confidence 478999999999 56555 599999999999999999999999999976 6999999999999999999999999999
Q ss_pred EEcCCCCCccccCCcchhHHHHHH
Q psy17502 94 IFSDKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 94 ~~~~g~~~~~y~g~~~~~~i~~~i 117 (461)
+|++|+...+|.|.++.++|.+||
T Consensus 79 ~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 79 LFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEeCCCeeeEeeCCCCHHHHHhhC
Confidence 999988888899999999988875
No 26
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.80 E-value=3.7e-19 Score=139.32 Aligned_cols=103 Identities=17% Similarity=0.336 Sum_probs=93.5
Q ss_pred CCceeEcChhhhhhh--hhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhh-hhcCcccccE
Q psy17502 137 SKAVVELTDSNFEKL--VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA-GEFNIRGYPT 213 (461)
Q Consensus 137 ~~~v~~l~~~~~~~~--~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~-~~~~i~~~P~ 213 (461)
.++|+.++.++|.+. +.+++++++|.||++||++|+.+.|.|+++|+.+++.+.|+.|||+.+..+| ++|+|.++||
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 357999999999986 2578899999999999999999999999999999888999999999999999 5899999999
Q ss_pred EEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
+++|++| .....|.|.++.+.|..|+
T Consensus 88 l~lf~~g----~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRS----RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEECC----ccceEEeCCCCHHHHHhhC
Confidence 9999987 4578899999999998874
No 27
>PRK09381 trxA thioredoxin; Provisional
Probab=99.80 E-value=4.3e-19 Score=140.29 Aligned_cols=107 Identities=24% Similarity=0.521 Sum_probs=99.5
Q ss_pred CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502 15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 94 (461)
++.|++++.++|.+.+++.+++++|+||++||++|+.+.|.|+++++++.+++.++.||++..+.++++|+|+++|++++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 46799999999998677778899999999999999999999999999998889999999999999999999999999999
Q ss_pred EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502 95 FSDKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
|++|+....+.|..+.+.|..|+..++
T Consensus 82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 82 FKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999887888999999999999998764
No 28
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.80 E-value=6e-18 Score=147.51 Aligned_cols=177 Identities=21% Similarity=0.386 Sum_probs=145.7
Q ss_pred hhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC-CCHHHHHHHHHhhccCC
Q psy17502 172 KNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQDIVTWALNKYTEN 250 (461)
Q Consensus 172 ~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~~~ 250 (461)
......|.++|+.+++.+.|+.+ .+.++++++++.. |+|++|++++ +....|.|. ++.++|.+||..+.
T Consensus 6 ~~~~~~f~~~A~~~~~~~~F~~~---~~~~~~~~~~~~~-p~i~~~k~~~---~~~~~y~~~~~~~~~l~~fI~~~~--- 75 (184)
T PF13848_consen 6 SELFEIFEEAAEKLKGDYQFGVT---FNEELAKKYGIKE-PTIVVYKKFD---EKPVVYDGDKFTPEELKKFIKKNS--- 75 (184)
T ss_dssp SHHHHHHHHHHHHHTTTSEEEEE---E-HHHHHHCTCSS-SEEEEEECTT---TSEEEESSSTTSHHHHHHHHHHHS---
T ss_pred cHHHHHHHHHHHhCcCCcEEEEE---cHHHHHHHhCCCC-CcEEEeccCC---CCceecccccCCHHHHHHHHHHhc---
Confidence 56788999999999989999997 4677999999997 9999999863 357889998 89999999999988
Q ss_pred CCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCC
Q psy17502 251 VPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIG 330 (461)
Q Consensus 251 ~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~ 330 (461)
.|.+.+++..+....+..+.+.+++++.+ .+.+..+.+.+.++.+|+++++++ .|+++|....+++++.||+.
T Consensus 76 --~P~v~~~t~~n~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~a~~~~~~~-~f~~~d~~~~~~~~~~~~i~ 148 (184)
T PF13848_consen 76 --FPLVPELTPENFEKLFSSPKPPVLILFDN----KDNESTEAFKKELQDIAKKFKGKI-NFVYVDADDFPRLLKYFGID 148 (184)
T ss_dssp --STSCEEESTTHHHHHHSTSSEEEEEEEET----TTHHHHHHHHHHHHHHHHCTTTTS-EEEEEETTTTHHHHHHTTTT
T ss_pred --cccccccchhhHHHHhcCCCceEEEEEEc----CCchhHHHHHHHHHHHHHhcCCeE-EEEEeehHHhHHHHHHcCCC
Confidence 89999999877666555555545555533 346678899999999999999986 77777877778899999999
Q ss_pred CCCCccEEEEccCc-cccccCCCCCCHHHHHHHHHH
Q psy17502 331 GFGYPAMAVLNAKK-MKYSLLKGPFSYDGINEFLRD 365 (461)
Q Consensus 331 ~~~~P~l~i~~~~~-~k~~~~~~~~~~~~i~~Fi~~ 365 (461)
+.++|+++|++..+ .++.++.++++.++|.+|+++
T Consensus 149 ~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 149 EDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 88999999999665 444456889999999999986
No 29
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.80 E-value=3.1e-19 Score=156.46 Aligned_cols=110 Identities=27% Similarity=0.606 Sum_probs=98.3
Q ss_pred CCCceEcCccchhHHHhc----CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCcc
Q psy17502 15 YSDVIKLTTSNFDDKVIK----SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFP 90 (461)
Q Consensus 15 ~~~v~~l~~~~f~~~~~~----~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 90 (461)
.+.|++||+++|++.+.. .+++++|+||+|||++|+++.|.|+++++++++.+.++.|||++++++|++|+|+++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 467999999999994332 2479999999999999999999999999999988999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502 91 TVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK 124 (461)
Q Consensus 91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~ 124 (461)
|+++|.+|+....+.|.++.+++.+|+.+.....
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 9999999866666678899999999999987543
No 30
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.80 E-value=2.2e-19 Score=141.80 Aligned_cols=101 Identities=17% Similarity=0.350 Sum_probs=90.9
Q ss_pred eEcCccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502 19 IKLTTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95 (461)
Q Consensus 19 ~~l~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 95 (461)
..++.++|.+.++. .+++++|.||+|||++|+.+.|.|+++++++++ ++.+++|||++++.++++++|+++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 35688889875654 568999999999999999999999999999976 599999999999999999999999999999
Q ss_pred cCCCCCccccCCcchhHHHHHHHH
Q psy17502 96 SDKRNPTPYQGARTADAIIDVALE 119 (461)
Q Consensus 96 ~~g~~~~~y~g~~~~~~i~~~i~~ 119 (461)
++|+....+.|..+.+.+.+|+.+
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhc
Confidence 999877778999999999999874
No 31
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.79 E-value=9e-19 Score=135.10 Aligned_cols=94 Identities=22% Similarity=0.414 Sum_probs=85.7
Q ss_pred cchhHHHhcC-CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCc
Q psy17502 24 SNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPT 102 (461)
Q Consensus 24 ~~f~~~~~~~-~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~ 102 (461)
++|++.+.+. +++++|.||++||++|+.+.|.++++++.+.+.+.++.||++++++++++|+|.++|++++|++|+...
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 3677745444 579999999999999999999999999999888999999999999999999999999999999988888
Q ss_pred cccCCcchhHHHHHH
Q psy17502 103 PYQGARTADAIIDVA 117 (461)
Q Consensus 103 ~y~g~~~~~~i~~~i 117 (461)
++.|..+.+.|..|+
T Consensus 81 ~~~g~~~~~~l~~~l 95 (96)
T cd02956 81 GFQGAQPEEQLRQML 95 (96)
T ss_pred eecCCCCHHHHHHHh
Confidence 899999999999886
No 32
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.78 E-value=1.2e-18 Score=137.38 Aligned_cols=101 Identities=30% Similarity=0.627 Sum_probs=88.5
Q ss_pred CceEcCccchhHHHh--cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-chhhHhh-cCCCCccE
Q psy17502 17 DVIKLTTSNFDDKVI--KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-EKSLSSS-HGVTGFPT 91 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-~~~l~~~-~~i~~~P~ 91 (461)
.|++++.++|+.++. +++++++|.||++||++|+++.|.|.++++.++++ +.++.|||+. +..+|++ ++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 588999999999443 35689999999999999999999999999999874 9999999997 6788874 99999999
Q ss_pred EEEEcCC-CCCccccCC-cchhHHHHHH
Q psy17502 92 VKIFSDK-RNPTPYQGA-RTADAIIDVA 117 (461)
Q Consensus 92 l~~~~~g-~~~~~y~g~-~~~~~i~~~i 117 (461)
+++|.+| .....|.|. ++.++|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999865 467889995 8999999885
No 33
>PHA02278 thioredoxin-like protein
Probab=99.78 E-value=5.9e-19 Score=135.83 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=84.1
Q ss_pred CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc----hhhHhhcCCCCccEEEEEcC
Q psy17502 22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE----KSLSSSHGVTGFPTVKIFSD 97 (461)
Q Consensus 22 ~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~P~l~~~~~ 97 (461)
+.++|.+ .++++++++|.|||+||++|+.+.|.++++++++..++.|++||++.+ ++++++|+|.++||+++|++
T Consensus 3 ~~~~~~~-~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNT-AIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHH-HHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 3467888 678889999999999999999999999999988666678999999976 68999999999999999999
Q ss_pred CCCCccccCCcchhHHHHH
Q psy17502 98 KRNPTPYQGARTADAIIDV 116 (461)
Q Consensus 98 g~~~~~y~g~~~~~~i~~~ 116 (461)
|+.+.++.|..+.+.+.++
T Consensus 82 G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCHHHHHhh
Confidence 9989999999888888765
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.78 E-value=8.3e-19 Score=137.62 Aligned_cols=100 Identities=40% Similarity=0.761 Sum_probs=92.4
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCC--chhhHhhcCCCCccEE
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADE--EKSLSSSHGVTGFPTV 92 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~--~~~l~~~~~i~~~P~l 92 (461)
+|++|++.+|++ .++++++++|+||++||++|+++.|.+.++++.+. +.+.++.+||++ ++.++++++|+++|++
T Consensus 1 ~~~~l~~~~~~~-~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 1 DVVHLTDEDFRK-FLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred CeEEechHhHHH-HHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 478899999998 77888899999999999999999999999999987 568999999998 8999999999999999
Q ss_pred EEEcCCCCCccccCCcchhHHHHHH
Q psy17502 93 KIFSDKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 93 ~~~~~g~~~~~y~g~~~~~~i~~~i 117 (461)
++|++|+....|.|..+.+.+.+|+
T Consensus 80 ~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 9999988788999999999998875
No 35
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.78 E-value=1.3e-18 Score=135.95 Aligned_cols=99 Identities=47% Similarity=0.909 Sum_probs=92.0
Q ss_pred cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCchhhHhhcCCCCccEEEEEcCC
Q psy17502 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDK 98 (461)
Q Consensus 21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g 98 (461)
|+.++|.+ ++.++++++|+||++||++|+.+.+.|+++++.+++ ++.++.+||+++++++++|+|.++|++++|++|
T Consensus 1 l~~~~~~~-~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDD-IVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHH-HhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 57889999 677888999999999999999999999999999987 699999999999999999999999999999987
Q ss_pred CCCccccCCcchhHHHHHHHHH
Q psy17502 99 RNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 99 ~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
+.+..|.|..+.+.+..|+.++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 6688999999999999999864
No 36
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=2.6e-18 Score=141.16 Aligned_cols=104 Identities=27% Similarity=0.527 Sum_probs=97.6
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 95 (461)
..+++++.++|++ +++++++++|.||++||++|+.+.|.|.++++++.+++.++.||++++++++++|+|+++|++++|
T Consensus 35 ~~~i~~~~~~~~~-~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 35 GEVINATGETLDK-LLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF 113 (139)
T ss_pred CCCEEcCHHHHHH-HHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence 4578899999999 788889999999999999999999999999999988899999999999999999999999999999
Q ss_pred cCCCCCccccCCcchhHHHHHHHHH
Q psy17502 96 SDKRNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 96 ~~g~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
++|+....+.|..+.+.|.+|+.+.
T Consensus 114 ~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 114 KNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred ECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 9998888899999999999999865
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.77 E-value=3e-18 Score=134.44 Aligned_cols=99 Identities=39% Similarity=0.753 Sum_probs=89.1
Q ss_pred ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95 (461)
Q Consensus 18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 95 (461)
|.+|+.++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+++ .+.++.+||+.+ +++..+++.++|++++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 678999999994455568999999999999999999999999999876 599999999987 68899999999999999
Q ss_pred cCCC--CCccccCCcchhHHHHHH
Q psy17502 96 SDKR--NPTPYQGARTADAIIDVA 117 (461)
Q Consensus 96 ~~g~--~~~~y~g~~~~~~i~~~i 117 (461)
.+|+ ...+|.|..+...|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9876 567899999999999885
No 38
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.77 E-value=1.5e-18 Score=134.20 Aligned_cols=91 Identities=16% Similarity=0.278 Sum_probs=78.9
Q ss_pred ccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCC
Q psy17502 23 TSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNP 101 (461)
Q Consensus 23 ~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~ 101 (461)
.++|++.+.. .+++++|.|||+||++|+.+.|.+++++.++.+.+.|++||++++++++++|+|+++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 3567773332 567999999999999999999999999999988899999999999999999999999999999999888
Q ss_pred ccccCCcchhHH
Q psy17502 102 TPYQGARTADAI 113 (461)
Q Consensus 102 ~~y~g~~~~~~i 113 (461)
.+..|..+...|
T Consensus 82 ~~~~G~~~~~~~ 93 (114)
T cd02954 82 KIDLGTGNNNKI 93 (114)
T ss_pred EEEcCCCCCceE
Confidence 777776555443
No 39
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.77 E-value=2.1e-18 Score=133.14 Aligned_cols=84 Identities=29% Similarity=0.555 Sum_probs=78.2
Q ss_pred cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-CchhhHhhcCCCCccEEEEEcCCCCCccccCCcch
Q psy17502 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA 110 (461)
Q Consensus 32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~ 110 (461)
.++++++|.|||+||++|+.+.|.|+++++.+++ +.++.||++ +.++++++|+|+++||+++|++| ...+|.|.++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 4678999999999999999999999999999875 889999998 78999999999999999999988 78899999999
Q ss_pred hHHHHHH
Q psy17502 111 DAIIDVA 117 (461)
Q Consensus 111 ~~i~~~i 117 (461)
+.|.+|+
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9999885
No 40
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.76 E-value=1.9e-17 Score=133.29 Aligned_cols=119 Identities=65% Similarity=1.223 Sum_probs=109.3
Q ss_pred CcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCC
Q psy17502 254 PEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFG 333 (461)
Q Consensus 254 p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~ 333 (461)
|.+.++++++.+...|..+++|+++++|++.+++.++++.+++.++++|++|+++.+.|+|+|...+..+++.||+++.+
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 67889999999998998899999999999889899999999999999999999995588999988888899999998778
Q ss_pred CccEEEEccCccccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy17502 334 YPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGH 372 (461)
Q Consensus 334 ~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~ 372 (461)
+|++++++..++||..+.+++|.++|.+|++++++|++.
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~ 120 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGP 120 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCcc
Confidence 999999998767998788999999999999999999985
No 41
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.76 E-value=9.5e-18 Score=130.55 Aligned_cols=100 Identities=32% Similarity=0.814 Sum_probs=91.4
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS 218 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~ 218 (461)
.++.++.++|++.+ ..+++++|.||++||++|+.+.+.|.++|+.+++.+.|+.+||+.++.+|++++|.++|++++|+
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 47789999999876 56689999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 219 PGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 219 ~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
+| .....|.|.++.++|.+|.
T Consensus 81 ~g----~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 81 SG----MNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred CC----CCcccCCCCCCHHHHHhhC
Confidence 87 3567899999999998873
No 42
>KOG0912|consensus
Probab=99.75 E-value=4.3e-17 Score=142.23 Aligned_cols=200 Identities=23% Similarity=0.445 Sum_probs=143.6
Q ss_pred cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-----CceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-----~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
++.++++.. .+++..++|.|||+||+.++.+.|+|.++|..++ +++.+|.|||+.+..++.+|.|..|||+.+|
T Consensus 1 lt~~N~~~i-l~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 1 LTSENIDSI-LDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred CccccHHHh-hccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 356677775 4779999999999999999999999999998886 5799999999999999999999999999999
Q ss_pred cCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHH
Q psy17502 218 SPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEI 297 (461)
Q Consensus 218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 297 (461)
++|-. ....|.|.++.+.+.+||.++. --.+.++.+.+.+.....+..-.++++++. .+...+ +.
T Consensus 80 rnG~~---~~rEYRg~RsVeaL~efi~kq~-----s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~------kdspey-~~ 144 (375)
T KOG0912|consen 80 RNGEM---MKREYRGQRSVEALIEFIEKQL-----SDPINEFESLDQLQNLDIPSKRTVIGYFPS------KDSPEY-DN 144 (375)
T ss_pred eccch---hhhhhccchhHHHHHHHHHHHh-----ccHHHHHHhHHHHHhhhccccceEEEEecc------CCCchH-HH
Confidence 99931 3447999999999999999887 223666666667766666566667777663 122222 56
Q ss_pred HHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCc-cccccCCCCC-CHHHHHHHHHHH
Q psy17502 298 LQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKK-MKYSLLKGPF-SYDGINEFLRDL 366 (461)
Q Consensus 298 ~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~-~k~~~~~~~~-~~~~i~~Fi~~~ 366 (461)
++++|.-+++.. .|+..-++ +.. .....+.+ +.++++.. ..-..+.|.+ +.+.+.+||++=
T Consensus 145 ~~kva~~lr~dc-~f~V~~gD----~~~--~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dK 207 (375)
T KOG0912|consen 145 LRKVASLLRDDC-VFLVGFGD----LLK--PHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDK 207 (375)
T ss_pred HHHHHHHHhhcc-EEEeeccc----ccc--CCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhc
Confidence 788888888876 33211111 111 11111222 44556554 2222456766 568899999873
No 43
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.75 E-value=9.1e-18 Score=131.52 Aligned_cols=102 Identities=40% Similarity=0.820 Sum_probs=92.9
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS 218 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~ 218 (461)
.+..++.++|++.+.+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+||+++.++|++++|.++|++++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 46789999999988777889999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCCCCCcCcccccCCCC-HHHHHHHH
Q psy17502 219 PGSRSASDAQEYNGGRT-SQDIVTWA 243 (461)
Q Consensus 219 ~~~~~~~~~~~y~g~~~-~~~i~~fi 243 (461)
+|++ ....|.|..+ .++|.+|+
T Consensus 82 ~g~~---~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNAS---KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCC---CceEccCCCCCHHHHHhhC
Confidence 8732 5778999886 99998885
No 44
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.75 E-value=6.9e-18 Score=132.62 Aligned_cols=100 Identities=42% Similarity=0.849 Sum_probs=89.9
Q ss_pred CceEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCC-chhhHhhcCCCCccEE
Q psy17502 17 DVIKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADE-EKSLSSSHGVTGFPTV 92 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~-~~~l~~~~~i~~~P~l 92 (461)
+|.+|+.++|++ +++ .+++++|+||++||++|+++.|.|.++++.++ +.+.++.+||++ ++++|++++|+++|++
T Consensus 1 ~~~~l~~~~~~~-~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 1 NVVELTDSNFDK-VVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred CeEEcchhcHHH-HhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 367899999999 555 45599999999999999999999999999987 469999999999 9999999999999999
Q ss_pred EEEcCC-CCCccccCCcchhHHHHHH
Q psy17502 93 KIFSDK-RNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 93 ~~~~~g-~~~~~y~g~~~~~~i~~~i 117 (461)
++|.+| +....|.|.++.+.|.+|+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccCCccCHHHHHhhC
Confidence 999865 5678899999999999885
No 45
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.75 E-value=1.8e-17 Score=129.79 Aligned_cols=103 Identities=36% Similarity=0.730 Sum_probs=95.7
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~ 219 (461)
|..+|.++|++.+.+++++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.++.++++|+|.++|++++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 46789999999986668999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 220 GSRSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
| .....|.|..+.+.|.+||.+|
T Consensus 81 g----~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 G----KEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp T----EEEEEEESSSSHHHHHHHHHHH
T ss_pred C----cEEEEEECCCCHHHHHHHHHcC
Confidence 8 4566899999999999999875
No 46
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.74 E-value=8.6e-18 Score=128.89 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=91.1
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEECCC--CHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPW--CGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~--c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 93 (461)
.+...++..||++ .+..+..++|.||++| |++|+.+.|.++++++++.+++.|++||++++++++.+|+|+++||++
T Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 10 HGWPRVDAATLDD-WLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred cCCcccccccHHH-HHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 4577899999998 7788899999999997 999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCccccCCcchhHHH
Q psy17502 94 IFSDKRNPTPYQGARTADAII 114 (461)
Q Consensus 94 ~~~~g~~~~~y~g~~~~~~i~ 114 (461)
+|++|+.+..+.|..+.+++.
T Consensus 89 ~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEEEEeCccCHHHHh
Confidence 999998888999988877664
No 47
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.74 E-value=9.5e-18 Score=138.10 Aligned_cols=98 Identities=16% Similarity=0.426 Sum_probs=85.5
Q ss_pred cccCCCCCCceEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCC
Q psy17502 9 HCLYPSYSDVIKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGV 86 (461)
Q Consensus 9 ~~~~~~~~~v~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i 86 (461)
...+...+.+.++++++|++.+.. .+++++|.||++||++|+.+.|.|+++++++++ ++.|++||++++++++++|+|
T Consensus 21 ~~~~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V 100 (152)
T cd02962 21 QPLYMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV 100 (152)
T ss_pred CCccCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc
Confidence 334445678999999999994333 346999999999999999999999999999875 599999999999999999999
Q ss_pred CC------ccEEEEEcCCCCCccccC
Q psy17502 87 TG------FPTVKIFSDKRNPTPYQG 106 (461)
Q Consensus 87 ~~------~P~l~~~~~g~~~~~y~g 106 (461)
.. +||+++|++|+...++.|
T Consensus 101 ~~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 101 STSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred eecCCcCCCCEEEEEECCEEEEEEec
Confidence 88 999999999988888877
No 48
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.73 E-value=1.7e-17 Score=128.94 Aligned_cols=96 Identities=17% Similarity=0.330 Sum_probs=85.2
Q ss_pred cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCchhhHhhcCCCCccEEEEEcCCC
Q psy17502 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKR 99 (461)
Q Consensus 21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~ 99 (461)
-+.++|++ +++++++++|+|||+||++|+.+.|.++++++.+++. +.|+.||++ +++++++|+|+++||+++|++|+
T Consensus 5 ~~~~~~~~-~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEE-LLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHH-HHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 46788898 7888999999999999999999999999999999754 889999999 78899999999999999999998
Q ss_pred CCccccCCcchhHHHHHHHH
Q psy17502 100 NPTPYQGARTADAIIDVALE 119 (461)
Q Consensus 100 ~~~~y~g~~~~~~i~~~i~~ 119 (461)
...+..|. +.+.+.++|..
T Consensus 83 ~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEEecC-ChHHHHHHHhh
Confidence 77778885 77788877753
No 49
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.73 E-value=1.8e-17 Score=129.17 Aligned_cols=98 Identities=41% Similarity=0.886 Sum_probs=90.0
Q ss_pred eEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHc--CCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL--KGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 19 ~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~--~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
++|+.++|.+ .++++++++|+||++||++|+.+.|.|.++++.+ .+.+.++.|||++++.++++|+|+++|++++|.
T Consensus 1 ~~l~~~~~~~-~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 1 VELTDDNFDE-LVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred CcccHHHHHH-HHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEc
Confidence 3688899999 7777779999999999999999999999999999 567999999999999999999999999999999
Q ss_pred CC-CCCccccCCcchhHHHHHH
Q psy17502 97 DK-RNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 97 ~g-~~~~~y~g~~~~~~i~~~i 117 (461)
++ ....+|.|..+.+.+.+|+
T Consensus 80 ~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 80 NGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCCcccccCCCCcCHHHHHhhC
Confidence 76 7888999999999998874
No 50
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.73 E-value=2.3e-17 Score=128.43 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=79.8
Q ss_pred CccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch---hhHhhcCCCCccEEEEEcC
Q psy17502 22 TTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK---SLSSSHGVTGFPTVKIFSD 97 (461)
Q Consensus 22 ~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~P~l~~~~~ 97 (461)
+.++|++.+.+ .+++++|.|||+||++|+.+.|.++++++++ +.+.|+.||++++. +++++|+|+++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 45678884332 3789999999999999999999999999999 56999999998874 8999999999999999999
Q ss_pred CCCCccccCCcchhHHHHHHH
Q psy17502 98 KRNPTPYQGARTADAIIDVAL 118 (461)
Q Consensus 98 g~~~~~y~g~~~~~~i~~~i~ 118 (461)
|+...++.|.. ...+.+-+.
T Consensus 81 G~~v~~~~G~~-~~~l~~~~~ 100 (103)
T cd02985 81 GEKIHEEEGIG-PDELIGDVL 100 (103)
T ss_pred CeEEEEEeCCC-HHHHHHHHH
Confidence 98888899954 455555443
No 51
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.72 E-value=5e-17 Score=127.13 Aligned_cols=98 Identities=36% Similarity=0.845 Sum_probs=85.8
Q ss_pred eEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95 (461)
Q Consensus 19 ~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 95 (461)
+++ +++|++ + .++++++|.||++||++|+.+.|.|+++++.+++ .+.++.+||+..+.++++++|.++|++++|
T Consensus 3 ~~~-~~~~~~-~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~ 79 (104)
T cd03000 3 LDL-DDSFKD-V-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL 79 (104)
T ss_pred eec-hhhhhh-h-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE
Confidence 344 378887 5 4567999999999999999999999999999853 499999999999999999999999999999
Q ss_pred cCCCCCccccCCcchhHHHHHHHHH
Q psy17502 96 SDKRNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 96 ~~g~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
.+| ....|.|..+.+.+..|+++.
T Consensus 80 ~~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 80 KGD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred cCC-CceeecCCCCHHHHHHHHHhh
Confidence 765 567799999999999999864
No 52
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.72 E-value=4.1e-17 Score=127.18 Aligned_cols=100 Identities=29% Similarity=0.570 Sum_probs=89.7
Q ss_pred cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN 100 (461)
Q Consensus 21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~ 100 (461)
++.++|.+.+...+++++|+||++||++|+.+.|.+.++++++.+++.|+.||+++++.++++|+|.++|++++|++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 46778888443445699999999999999999999999999998889999999999999999999999999999998887
Q ss_pred CccccCCcchhHHHHHHHHH
Q psy17502 101 PTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 101 ~~~y~g~~~~~~i~~~i~~~ 120 (461)
...+.|..+.+.+..|+.+.
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeeecCCCCHHHHHHHHHhh
Confidence 78889999999999999864
No 53
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.71 E-value=6.7e-17 Score=125.42 Aligned_cols=100 Identities=19% Similarity=0.345 Sum_probs=85.5
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeC--CCCh---hhhhhhHHHHHHHHHhcCceEEEEEeC-----cccHhhhhhcCcc
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFA--PWCG---HCKNLEPHWEKAASELEGKVKLGAVDA-----TVHQRIAGEFNIR 209 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~---~c~~~~~~~~~~a~~~~~~i~f~~v~~-----~~~~~l~~~~~i~ 209 (461)
++.|+..+|++.+ ..++.++|.||+ |||+ +|+.+.+.|.+++. .+.+|.||| +++.+||++|+|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 6789999999976 778899999999 9998 77777777777664 489999999 5678999999999
Q ss_pred --cccEEEEEcCCCCCCcCcccccCC-CCHHHHHHHHHhh
Q psy17502 210 --GYPTIKFFSPGSRSASDAQEYNGG-RTSQDIVTWALNK 246 (461)
Q Consensus 210 --~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~ 246 (461)
++|||++|++|.. ..+..|+|. ++.++|++||.++
T Consensus 78 ~~gyPTl~lF~~g~~--~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDF--ENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCc--CCCccCCCCcccHHHHHHHHHhc
Confidence 9999999998821 246789996 9999999999875
No 54
>KOG0910|consensus
Probab=99.71 E-value=5.1e-17 Score=129.04 Aligned_cols=104 Identities=34% Similarity=0.553 Sum_probs=96.5
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~ 219 (461)
+...+..+|++.+++++.|++|.|+|+||++|+.+.|.+++++..+.+.++|+.+|.+++.+++.+|+|..+||+++|++
T Consensus 45 ~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfkn 124 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKN 124 (150)
T ss_pred ccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 220 GSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
| +....+.|..+.+.+.+||.+..
T Consensus 125 G----e~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 125 G----EKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred C----EEeeeecccCCHHHHHHHHHHHh
Confidence 9 45668889999999999998753
No 55
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.71 E-value=9.8e-17 Score=126.44 Aligned_cols=101 Identities=35% Similarity=0.697 Sum_probs=89.9
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc------CceEEEEEeCcccHhhhhhcCccccc
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE------GKVKLGAVDATVHQRIAGEFNIRGYP 212 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~------~~i~f~~v~~~~~~~l~~~~~i~~~P 212 (461)
.+..++.++|++.+ +.+++++|.||++||++|+.+.+.|+++|+.++ +.+.|+.+||+.+.+++++|+|.++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47889999999875 677899999999999999999999999998764 25899999999999999999999999
Q ss_pred EEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
++++|++|.. ....|.|.++.++|.+||
T Consensus 81 tl~~~~~g~~---~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMM---MKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcC---cceecCCCCCHHHHHhhC
Confidence 9999998831 357899999999999985
No 56
>KOG4277|consensus
Probab=99.71 E-value=1.6e-16 Score=138.19 Aligned_cols=186 Identities=30% Similarity=0.567 Sum_probs=125.8
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccc
Q psy17502 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY 230 (461)
Q Consensus 154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y 230 (461)
.++..|+|.||+|||+||+.+.|+|.++...+++ .++.+++||+..+.++.+++|++||||.+|+.+ ....|
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd-----~a~dY 115 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD-----HAIDY 115 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC-----eeeec
Confidence 4567999999999999999999999999988874 599999999999999999999999999999987 78899
Q ss_pred cCCCCHHHHHHHHHhhccCCCCCCcceeecCHH-HHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc
Q psy17502 231 NGGRTSQDIVTWALNKYTENVPPPEIKQIVSEA-TFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV 309 (461)
Q Consensus 231 ~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~ 309 (461)
.|.++.++|++|..+-. .|.+..++... ....+...+.+..+++ +.++. -+.+.+.++|...
T Consensus 116 RG~R~Kd~iieFAhR~a-----~aiI~pi~enQ~~fehlq~Rhq~ffVf~-----Gtge~---PL~d~fidAASe~---- 178 (468)
T KOG4277|consen 116 RGGREKDAIIEFAHRCA-----AAIIEPINENQIEFEHLQARHQPFFVFF-----GTGEG---PLFDAFIDAASEK---- 178 (468)
T ss_pred CCCccHHHHHHHHHhcc-----cceeeecChhHHHHHHHhhccCceEEEE-----eCCCC---cHHHHHHHHhhhh----
Confidence 99999999999997754 56666665422 2333334445545543 21122 2233444444432
Q ss_pred eEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHH
Q psy17502 310 WGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDL 366 (461)
Q Consensus 310 f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~ 366 (461)
|.+...- ..+.+++-... +....|++++++-. .|.. ..+.+.+++.+||+.-
T Consensus 179 ~~~a~Ff-SaseeVaPe~~-~~kempaV~VFKDe--tf~i-~de~dd~dLseWinRE 230 (468)
T KOG4277|consen 179 FSVARFF-SASEEVAPEEN-DAKEMPAVAVFKDE--TFEI-EDEGDDEDLSEWINRE 230 (468)
T ss_pred eeeeeee-ccccccCCccc-chhhccceEEEccc--eeEE-EecCchhHHHHHHhHh
Confidence 2222111 11112221111 12257999988533 3433 2345678899999764
No 57
>PTZ00062 glutaredoxin; Provisional
Probab=99.70 E-value=3.3e-16 Score=134.95 Aligned_cols=162 Identities=14% Similarity=0.182 Sum_probs=116.7
Q ss_pred CccchhHHHhcCC-CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502 22 TTSNFDDKVIKSD-EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN 100 (461)
Q Consensus 22 ~~~~f~~~~~~~~-~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~ 100 (461)
+.+.|++ +++++ +.++++|+|+||++|+++.|.+.++++++.+ +.|+.||++ |+|.++|++++|++|+.
T Consensus 5 ~~ee~~~-~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 5 KKEEKDK-LIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQL 74 (204)
T ss_pred CHHHHHH-HHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEE
Confidence 4567888 55544 7899999999999999999999999999854 999999977 99999999999999999
Q ss_pred CccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEE---eCCCChhhhhhhHH
Q psy17502 101 PTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEF---FAPWCGHCKNLEPH 177 (461)
Q Consensus 101 ~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f---~~~~c~~c~~~~~~ 177 (461)
+.++.|.. +..+..++.+..... +. ....+...+. .+++++++..= ..|+|++|+.....
T Consensus 75 i~r~~G~~-~~~~~~~~~~~~~~~--------------~~-~~~~~~v~~l-i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~ 137 (204)
T PTZ00062 75 INSLEGCN-TSTLVSFIRGWAQKG--------------SS-EDTVEKIERL-IRNHKILLFMKGSKTFPFCRFSNAVVNM 137 (204)
T ss_pred EeeeeCCC-HHHHHHHHHHHcCCC--------------CH-HHHHHHHHHH-HhcCCEEEEEccCCCCCCChhHHHHHHH
Confidence 89988765 778888888775211 00 1112334443 34444333322 22699999888777
Q ss_pred HHHHHHHhcCceEEEEEeCcccHhhhhh----cCcccccEEEE
Q psy17502 178 WEKAASELEGKVKLGAVDATVHQRIAGE----FNIRGYPTIKF 216 (461)
Q Consensus 178 ~~~~a~~~~~~i~f~~v~~~~~~~l~~~----~~i~~~P~i~~ 216 (461)
+.+. .+.|..+|...++++.+. -|..++|.|++
T Consensus 138 L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 138 LNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 7752 466777777666554333 35556787665
No 58
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.70 E-value=1.5e-16 Score=125.78 Aligned_cols=104 Identities=45% Similarity=0.918 Sum_probs=92.9
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc--cHhhhhhcCcccccEEEEE
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV--HQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~--~~~l~~~~~i~~~P~i~~~ 217 (461)
++.++.+++.+.+.+.+.+++|.||++||++|+.+.+.|.++++.+.+.+.|+.+||+. +.+++++|+|.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 67899999999887778889999999999999999999999999998889999999998 8899999999999999999
Q ss_pred cCCCCC-CcCcccccCCCCHHHHHHHH
Q psy17502 218 SPGSRS-ASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 218 ~~~~~~-~~~~~~y~g~~~~~~i~~fi 243 (461)
+++... ......|.|.++.++|.+||
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 988411 01456799999999999998
No 59
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.70 E-value=1.3e-16 Score=125.66 Aligned_cols=102 Identities=19% Similarity=0.341 Sum_probs=91.5
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChh--hh--hhhHHHHHHHHHh--cCceEEEEEeCcccHhhhhhcCccccc
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGH--CK--NLEPHWEKAASEL--EGKVKLGAVDATVHQRIAGEFNIRGYP 212 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~--c~--~~~~~~~~~a~~~--~~~i~f~~v~~~~~~~l~~~~~i~~~P 212 (461)
.+..+|+++|++.+.+++.++++.|++.||++ |+ .+.|.+.++|..+ .+.+.|++||++.+++++++|+|.++|
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 58889999999998888889999999999976 99 7788888888877 678999999999999999999999999
Q ss_pred EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502 213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
|+++|++| +...|.|.++.+.|.+||.+
T Consensus 90 Tl~lfk~G-----~~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 90 SIYVFKDD-----EVIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred EEEEEECC-----EEEEeeCCCCHHHHHHHHHH
Confidence 99999998 33459999999999999975
No 60
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.69 E-value=1.4e-16 Score=153.55 Aligned_cols=109 Identities=28% Similarity=0.659 Sum_probs=93.8
Q ss_pred cccCCCCCCceEcCccchhHHHhc---CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCch-hhH-h
Q psy17502 9 HCLYPSYSDVIKLTTSNFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEK-SLS-S 82 (461)
Q Consensus 9 ~~~~~~~~~v~~l~~~~f~~~~~~---~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~-~l~-~ 82 (461)
..++ .+..|++||.+||++ +++ .++++||.||||||++|+.+.|.|+++++++.+. +.|+.|||+.+. .++ +
T Consensus 345 ~dl~-~~~~Vv~L~~~nf~~-~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~ 422 (463)
T TIGR00424 345 ADIF-DSNNVVSLSRPGIEN-LLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQ 422 (463)
T ss_pred cccc-CCCCeEECCHHHHHH-HHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHH
Confidence 3444 566899999999999 543 7789999999999999999999999999999874 899999999764 454 7
Q ss_pred hcCCCCccEEEEEcCCC-CCcccc-CCcchhHHHHHHHH
Q psy17502 83 SHGVTGFPTVKIFSDKR-NPTPYQ-GARTADAIIDVALE 119 (461)
Q Consensus 83 ~~~i~~~P~l~~~~~g~-~~~~y~-g~~~~~~i~~~i~~ 119 (461)
+|+|.++||+++|++|. ....|. |.++.+.|..||+.
T Consensus 423 ~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 423 ELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred HcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 89999999999999774 467797 58999999999974
No 61
>KOG1731|consensus
Probab=99.69 E-value=9.8e-17 Score=152.31 Aligned_cols=232 Identities=20% Similarity=0.358 Sum_probs=147.5
Q ss_pred cccccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCC--chhhH
Q psy17502 7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADE--EKSLS 81 (461)
Q Consensus 7 ~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~--~~~l~ 81 (461)
...++++..+.|++|+.++|...+...++..+|.||++|||||+++.|.|.++|+.+.. -+.++.|||.+ +..+|
T Consensus 30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 34566777899999999999995555666999999999999999999999999998864 58999999964 57899
Q ss_pred hhcCCCCccEEEEEcCCCCC----ccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeE-cChhhhhhhhhcCC
Q psy17502 82 SSHGVTGFPTVKIFSDKRNP----TPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVE-LTDSNFEKLVYNSD 156 (461)
Q Consensus 82 ~~~~i~~~P~l~~~~~g~~~----~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~~~~~~ 156 (461)
+.|+|.+||+|.+|..+... ..+.|.....++...+.+.+.+.......+.++.-. ++.. -+-+++.+.+....
T Consensus 110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~-pl~~~~~~~~l~~~~~~~~ 188 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFD-PLKDTTTLEELDEGISTTA 188 (606)
T ss_pred hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCC-CCCCcchHHHHhccccccc
Confidence 99999999999999843222 456777778888887777665443311111222111 1211 12233333322222
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502 157 DIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT 235 (461)
Q Consensus 157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~ 235 (461)
..+.+.|-.. ...-.+..+-..+. +.+....+-+++.-.+.. +++.+.|...++++|....--+..+.++..
T Consensus 189 ~yvAiv~e~~------~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y 261 (606)
T KOG1731|consen 189 NYVAIVFETE------PSDLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAY 261 (606)
T ss_pred ceeEEEEecC------CcccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHH
Confidence 3444555322 12224444444443 234444444444444555 889999999999999432212222333334
Q ss_pred HHHHHHHHHhh
Q psy17502 236 SQDIVTWALNK 246 (461)
Q Consensus 236 ~~~i~~fi~~~ 246 (461)
.+.|-+++-+.
T Consensus 262 ~~~I~~~lg~~ 272 (606)
T KOG1731|consen 262 VKKIDDLLGDK 272 (606)
T ss_pred HHHHHHHhcCc
Confidence 46666666444
No 62
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.69 E-value=1.4e-16 Score=124.66 Aligned_cols=93 Identities=22% Similarity=0.351 Sum_probs=83.8
Q ss_pred cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCC----chhhHhhcCCCCccEEEEEc
Q psy17502 24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADE----EKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~~~~ 96 (461)
++|.+ +++++++++|+||++||++|+.+.+.+ .++++.+++++.++.||+++ .++++++|+|.++||+++|+
T Consensus 2 ~~~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHH-HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 46777 788899999999999999999999988 67888887689999999987 57899999999999999998
Q ss_pred --CCCCCccccCCcchhHHHHHH
Q psy17502 97 --DKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 97 --~g~~~~~y~g~~~~~~i~~~i 117 (461)
+|+.+.++.|..+.++|.+++
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHh
Confidence 688889999999999998876
No 63
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.69 E-value=3e-16 Score=124.20 Aligned_cols=97 Identities=36% Similarity=0.779 Sum_probs=79.7
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCC--chhhHhhcCCCCccE
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADE--EKSLSSSHGVTGFPT 91 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~--~~~l~~~~~i~~~P~ 91 (461)
.+++|+.++|.+.+.+.+++++|.||++||++|+.+.|.|+++++++++ .+.|+.|||+. ++++|++|+|+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5889999999995555567999999999999999999999999998853 59999999864 578999999999999
Q ss_pred EEEEcCCCCC----ccccCC-cchhHH
Q psy17502 92 VKIFSDKRNP----TPYQGA-RTADAI 113 (461)
Q Consensus 92 l~~~~~g~~~----~~y~g~-~~~~~i 113 (461)
+++|++|... ..|.|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999976422 345665 444443
No 64
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.69 E-value=4.3e-17 Score=129.28 Aligned_cols=93 Identities=18% Similarity=0.319 Sum_probs=81.6
Q ss_pred CCceEcCccchhHHHhcC--CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502 16 SDVIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 93 (461)
..+.++++++|.+.+.+. +++++|+||+|||++|+.+.|.++++++++.+ +.|++||++++ +++++|+|.++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 457899999999944444 27999999999999999999999999999865 89999999988 999999999999999
Q ss_pred EEcCCCCCccccCCcch
Q psy17502 94 IFSDKRNPTPYQGARTA 110 (461)
Q Consensus 94 ~~~~g~~~~~y~g~~~~ 110 (461)
+|++|+...++.|..+.
T Consensus 82 ~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 82 VYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEECCEEEEEEecHHHh
Confidence 99999888888775433
No 65
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.68 E-value=5.7e-16 Score=121.15 Aligned_cols=101 Identities=64% Similarity=1.180 Sum_probs=92.5
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~ 219 (461)
+..++.+++.+.+.+.+.+++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++++.+++++++|.++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 57889999999877777789999999999999999999999999998889999999999999999999999999999998
Q ss_pred CCCCCcCcccccCCCCHHHHHHHH
Q psy17502 220 GSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 220 ~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
+. .....|.|..+.++|.+|+
T Consensus 82 ~~---~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GK---NSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CC---cceeecCCCCCHHHHHHHh
Confidence 73 2567899999999999997
No 66
>PLN02309 5'-adenylylsulfate reductase
Probab=99.67 E-value=4.5e-16 Score=150.05 Aligned_cols=107 Identities=29% Similarity=0.638 Sum_probs=93.7
Q ss_pred CCCCceEcCccchhHHHh--cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecC-CchhhHh-hcCCCC
Q psy17502 14 SYSDVIKLTTSNFDDKVI--KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD-EEKSLSS-SHGVTG 88 (461)
Q Consensus 14 ~~~~v~~l~~~~f~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~-~~~~l~~-~~~i~~ 88 (461)
++..|+.|+.++|++++. +.+++++|.||+|||++|+.+.|.|+++++++.+. +.|++|||+ ++.++|+ +|+|.+
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 456899999999999442 47789999999999999999999999999999764 999999999 8889996 699999
Q ss_pred ccEEEEEcCCC-CCccccC-CcchhHHHHHHHHH
Q psy17502 89 FPTVKIFSDKR-NPTPYQG-ARTADAIIDVALEA 120 (461)
Q Consensus 89 ~P~l~~~~~g~-~~~~y~g-~~~~~~i~~~i~~~ 120 (461)
+||+++|.+|. ....|.| .++.+.|..|+...
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999998664 5678975 79999999999863
No 67
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.66 E-value=8.2e-16 Score=119.69 Aligned_cols=98 Identities=35% Similarity=0.745 Sum_probs=87.2
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
.|+.++.++|++.+ ++ .++|.||++||++|+.+.|.|.++++.+++ .+.|+.+|++.++.++++|+|.++|+++++
T Consensus 2 ~v~~l~~~~f~~~~-~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTLVL-EG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHHHh-CC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 47889999999865 33 378999999999999999999999998764 699999999999999999999999999999
Q ss_pred cCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502 218 SPGSRSASDAQEYNGGRTSQDIVTWAL 244 (461)
Q Consensus 218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~ 244 (461)
++| ....|.|..+.++|.+|+.
T Consensus 79 ~~g-----~~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 79 KDG-----VFRRYQGPRDKEDLISFIE 100 (101)
T ss_pred CCC-----CEEEecCCCCHHHHHHHHh
Confidence 887 3467999999999999985
No 68
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.66 E-value=3e-16 Score=123.85 Aligned_cols=90 Identities=21% Similarity=0.303 Sum_probs=80.5
Q ss_pred CceEcCc-cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502 17 DVIKLTT-SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95 (461)
Q Consensus 17 ~v~~l~~-~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 95 (461)
.+..+++ ++|.+ .++++++++|+||+|||++|+.+.|.++++++++.+ +.|++||+++.++++++|+|..+||+++|
T Consensus 5 ~v~~i~~~~~~~~-~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFE-IVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHH-HHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 4677777 88998 778889999999999999999999999999998865 89999999999999999999999999999
Q ss_pred cCCCCCccccCCc
Q psy17502 96 SDKRNPTPYQGAR 108 (461)
Q Consensus 96 ~~g~~~~~y~g~~ 108 (461)
++|+.+.++.|..
T Consensus 83 k~G~~v~~~~g~~ 95 (113)
T cd02989 83 KNGKTVDRIVGFE 95 (113)
T ss_pred ECCEEEEEEECcc
Confidence 9997776665543
No 69
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.66 E-value=5.7e-16 Score=119.36 Aligned_cols=91 Identities=25% Similarity=0.483 Sum_probs=84.4
Q ss_pred hHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccC
Q psy17502 27 DDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQG 106 (461)
Q Consensus 27 ~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g 106 (461)
+..+.+.+++++++||++||+.|+.+.|.++++++++.+++.++.+|++++++++++++|.++|++++|++|+...++.|
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g 85 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG 85 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence 34456788899999999999999999999999999998889999999999999999999999999999999988889999
Q ss_pred CcchhHHHHHH
Q psy17502 107 ARTADAIIDVA 117 (461)
Q Consensus 107 ~~~~~~i~~~i 117 (461)
..+.+++.+|+
T Consensus 86 ~~~~~~~~~~l 96 (97)
T cd02949 86 VKMKSEYREFI 96 (97)
T ss_pred CccHHHHHHhh
Confidence 99999998886
No 70
>KOG0907|consensus
Probab=99.66 E-value=3.5e-16 Score=120.28 Aligned_cols=84 Identities=25% Similarity=0.503 Sum_probs=75.9
Q ss_pred cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchh
Q psy17502 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD 111 (461)
Q Consensus 32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~ 111 (461)
..+++++|.|||+|||+|+.+.|.+.+++.++.+ +.|.+||+++.++++++++|+..||+++|++|+...++.|....
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~- 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA- 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH-
Confidence 3458999999999999999999999999999988 99999999999999999999999999999999999898887665
Q ss_pred HHHHHH
Q psy17502 112 AIIDVA 117 (461)
Q Consensus 112 ~i~~~i 117 (461)
.+.+.+
T Consensus 97 ~l~~~i 102 (106)
T KOG0907|consen 97 ELEKKI 102 (106)
T ss_pred HHHHHH
Confidence 444444
No 71
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.66 E-value=9.6e-16 Score=123.35 Aligned_cols=105 Identities=15% Similarity=0.248 Sum_probs=87.8
Q ss_pred CccchhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE-EEcCCC
Q psy17502 22 TTSNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK-IFSDKR 99 (461)
Q Consensus 22 ~~~~f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~-~~~~g~ 99 (461)
+..+|++.+. .++++++|.|||+||++|+.+.|.++++++++++.+.|++||+++++++++.|+|++.|+++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 3577888444 45779999999999999999999999999999888999999999999999999999877666 888887
Q ss_pred -CCccccC--------CcchhHHHHHHHHHHhhhhc
Q psy17502 100 -NPTPYQG--------ARTADAIIDVALEAIRQKVK 126 (461)
Q Consensus 100 -~~~~y~g--------~~~~~~i~~~i~~~~~~~~~ 126 (461)
...+..| ..+.+++.+-+....+...+
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~ 125 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHHHHHhc
Confidence 5666677 56777888877777665544
No 72
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.65 E-value=1.3e-15 Score=125.30 Aligned_cols=99 Identities=17% Similarity=0.299 Sum_probs=87.1
Q ss_pred ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc--hhhHhhcCCCCccEEEEEc-CCC
Q psy17502 23 TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE--KSLSSSHGVTGFPTVKIFS-DKR 99 (461)
Q Consensus 23 ~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~P~l~~~~-~g~ 99 (461)
...|++ ++..+++++|+||++||++|+.+.|.+.++++++.+++.|+.||++.. ..++++|+|.++|++++|. +|+
T Consensus 10 ~~~~~~-a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 10 STPPEV-ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred cCCHHH-HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 456676 778889999999999999999999999999999987778888887654 5899999999999999996 788
Q ss_pred CCccccCCcchhHHHHHHHHHHh
Q psy17502 100 NPTPYQGARTADAIIDVALEAIR 122 (461)
Q Consensus 100 ~~~~y~g~~~~~~i~~~i~~~~~ 122 (461)
...++.|..+.+.|..++...+.
T Consensus 89 ~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHc
Confidence 88889999999999999988774
No 73
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.64 E-value=9.5e-16 Score=118.43 Aligned_cols=93 Identities=22% Similarity=0.452 Sum_probs=79.8
Q ss_pred ccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502 23 TSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN 100 (461)
Q Consensus 23 ~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~ 100 (461)
.++|++ ++... ++++|.||++||++|+.+.|.++++++++...+.++.+|+++.++++++|+|.++||+++|.+|+.
T Consensus 2 ~~~~~~-~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 2 EEEFEE-LLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred HHHHHH-HHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 467888 55555 899999999999999999999999999986679999999999999999999999999999999877
Q ss_pred CccccCCcchhHHHHHH
Q psy17502 101 PTPYQGARTADAIIDVA 117 (461)
Q Consensus 101 ~~~y~g~~~~~~i~~~i 117 (461)
..++.|. ..+.|.+.+
T Consensus 81 ~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 81 VDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEEeCC-CHHHHHHhh
Confidence 7777775 445555443
No 74
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.64 E-value=2e-15 Score=118.98 Aligned_cols=102 Identities=31% Similarity=0.636 Sum_probs=88.2
Q ss_pred ceeEcChhhhhhhhh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc-cHhhhh-hcCcccccE
Q psy17502 139 AVVELTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV-HQRIAG-EFNIRGYPT 213 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~-~~~l~~-~~~i~~~P~ 213 (461)
.|+.++.++|+..+. +++++++|.||++||++|+.+.+.|.++++.+++ .+.++.+|++. +..++. .+++.++|+
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 477899999998763 3578999999999999999999999999999986 49999999987 577786 499999999
Q ss_pred EEEEcCCCCCCcCcccccCC-CCHHHHHHHH
Q psy17502 214 IKFFSPGSRSASDAQEYNGG-RTSQDIVTWA 243 (461)
Q Consensus 214 i~~~~~~~~~~~~~~~y~g~-~~~~~i~~fi 243 (461)
+++|+++++ ....|+|. ++.++|..||
T Consensus 82 i~~f~~~~~---~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSR---QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCC---CceeccCCCCCHHHHHhhC
Confidence 999998743 56789995 8999999885
No 75
>PTZ00051 thioredoxin; Provisional
Probab=99.64 E-value=1.2e-15 Score=118.14 Aligned_cols=93 Identities=26% Similarity=0.543 Sum_probs=80.5
Q ss_pred ceEcCc-cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 18 VIKLTT-SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 18 v~~l~~-~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
|.+++. ++|.+ +++.+++++|+||++||++|+.+.|.++++++++.+ +.|+.||++++++++++|+|.++|++++|+
T Consensus 2 v~~i~~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 344554 56666 788889999999999999999999999999998764 899999999999999999999999999999
Q ss_pred CCCCCccccCCcchhHH
Q psy17502 97 DKRNPTPYQGARTADAI 113 (461)
Q Consensus 97 ~g~~~~~y~g~~~~~~i 113 (461)
+|+....+.|. ..++|
T Consensus 80 ~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 80 NGSVVDTLLGA-NDEAL 95 (98)
T ss_pred CCeEEEEEeCC-CHHHh
Confidence 99888888885 44444
No 76
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.63 E-value=2.7e-15 Score=131.70 Aligned_cols=110 Identities=39% Similarity=0.823 Sum_probs=95.9
Q ss_pred CCceeEcChhhhhhhhhcC----CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccccc
Q psy17502 137 SKAVVELTDSNFEKLVYNS----DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP 212 (461)
Q Consensus 137 ~~~v~~l~~~~~~~~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P 212 (461)
...++.++.++|++.+... +.+++|.||++||++|+.+.|.|+++++.+++.+.|+.+|++.+++++++|+|.++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 4568999999999876432 578999999999999999999999999999988999999999999999999999999
Q ss_pred EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCC
Q psy17502 213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN 250 (461)
Q Consensus 213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~ 250 (461)
++++|++| .....+.|.++.++|.+|+.++....
T Consensus 109 Tl~~f~~G----~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 109 TLLLFDKG----KMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred EEEEEECC----EEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 99999987 23334567899999999999887433
No 77
>PRK09381 trxA thioredoxin; Provisional
Probab=99.62 E-value=4.8e-15 Score=117.06 Aligned_cols=106 Identities=28% Similarity=0.571 Sum_probs=95.4
Q ss_pred CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
..++.++.++|.+.+.+.+.+++|.||++||++|..+.+.|+++++.+.+.+.|+.+|++....++++|++.++|++++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 45788899999987777788999999999999999999999999999988899999999999999999999999999999
Q ss_pred cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
++| .....+.|..+.+.|..||..+.
T Consensus 83 ~~G----~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNG----EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCC----eEEEEecCCCCHHHHHHHHHHhc
Confidence 887 35567789999999999997653
No 78
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.62 E-value=3.6e-15 Score=116.85 Aligned_cols=102 Identities=42% Similarity=0.863 Sum_probs=90.0
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQRIAGEFNIRGYPTIKF 216 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~~~l~~~~~i~~~P~i~~ 216 (461)
+|..++.++|++.+.+.+++++|.||++||++|+.+.+.|.++++.+++ .+.|+.+||+.+ +++..+++.++|++++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 3678999999998777778999999999999999999999999999876 599999999876 5788899999999999
Q ss_pred EcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 217 FSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
|++|.+ .....|.|..+.++|.+||
T Consensus 80 ~~~~~~--~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDK--SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCc--CCceEccCCcCHHHHHhhC
Confidence 998842 2567899999999999986
No 79
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.62 E-value=3.6e-15 Score=116.37 Aligned_cols=98 Identities=41% Similarity=0.905 Sum_probs=87.2
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKF 216 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P~i~~ 216 (461)
++.++.++|++.+ .++ +++|.||++||++|+.+.+.|.++++.+++ .+.|+.+||+.+..++++++|.++|++++
T Consensus 2 ~~~l~~~~f~~~~-~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHI-AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHh-hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 5678999999886 333 599999999999999999999999999976 79999999999999999999999999999
Q ss_pred EcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 217 FSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
|++| .....|.|..+.++|.+||
T Consensus 80 ~~~g----~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDG----EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCC----CeeeEeeCCCCHHHHHhhC
Confidence 9887 3566799999999998875
No 80
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.62 E-value=3.3e-15 Score=117.94 Aligned_cols=100 Identities=25% Similarity=0.425 Sum_probs=87.1
Q ss_pred EcChhhhhhhhhc--CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502 142 ELTDSNFEKLVYN--SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFFS 218 (461)
Q Consensus 142 ~l~~~~~~~~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~ 218 (461)
.++.+++.+.+.. .+++++|.||++||++|+.+.|.|.++++.+++ .+.|+.+|++.++.++++++|.++|++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 4577778765543 578999999999999999999999999999975 5999999999999999999999999999999
Q ss_pred CCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502 219 PGSRSASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
+| .....+.|..+.+.|.+||.+
T Consensus 88 ~g----~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 88 NG----QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CC----EEEEEecCCCCHHHHHHHHhc
Confidence 77 355567899999999999864
No 81
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.61 E-value=5.1e-15 Score=114.06 Aligned_cols=93 Identities=26% Similarity=0.510 Sum_probs=82.7
Q ss_pred hhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCc
Q psy17502 147 NFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS 225 (461)
Q Consensus 147 ~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~ 225 (461)
+|++.+.++ +++++|.||++||++|+.+.+.+.+++..+.+.+.|+.+|++.+..++++|+|.++|++++|++| .
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g----~ 77 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG----Q 77 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC----E
Confidence 456666444 67999999999999999999999999999988899999999999999999999999999999977 3
Q ss_pred CcccccCCCCHHHHHHHH
Q psy17502 226 DAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 226 ~~~~y~g~~~~~~i~~fi 243 (461)
....+.|..+.+.|..|+
T Consensus 78 ~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 78 PVDGFQGAQPEEQLRQML 95 (96)
T ss_pred EeeeecCCCCHHHHHHHh
Confidence 456789999999999887
No 82
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-14 Score=128.04 Aligned_cols=109 Identities=31% Similarity=0.620 Sum_probs=98.8
Q ss_pred CCCCceeEcChhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccccc
Q psy17502 135 GSSKAVVELTDSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP 212 (461)
Q Consensus 135 ~~~~~v~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P 212 (461)
...+.|+++|+.+|+..+..+ ..|++|.||+|||++|+.+.|.+++++..++|.+.+++|||+.++.++.+|||++.|
T Consensus 20 ~~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIP 99 (304)
T COG3118 20 MAAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIP 99 (304)
T ss_pred cccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCC
Confidence 344558899999999887543 459999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
++++|.+| .....|.|....+.|.+|+.+..
T Consensus 100 tV~af~dG----qpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 100 TVYAFKDG----QPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred eEEEeeCC----cCccccCCCCcHHHHHHHHHHhc
Confidence 99999999 46777999999999999998875
No 83
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.59 E-value=1.6e-14 Score=112.67 Aligned_cols=99 Identities=51% Similarity=0.942 Sum_probs=89.1
Q ss_pred cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220 (461)
Q Consensus 143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~ 220 (461)
|+.++|.+.+ .++++++|.|+++||+.|+.+.+.|.+++..+++ .+.++.+|++.+..++++|++.++|++++|+++
T Consensus 1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4667888876 4788999999999999999999999999999986 699999999999999999999999999999988
Q ss_pred CCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 221 SRSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 221 ~~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
. ....|.|..+.+.|..||.++
T Consensus 80 ~----~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 K----KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred C----cceeecCCCCHHHHHHHHHhc
Confidence 3 367899999999999999764
No 84
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.58 E-value=1.2e-14 Score=114.87 Aligned_cols=96 Identities=19% Similarity=0.226 Sum_probs=82.6
Q ss_pred cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCc-
Q psy17502 24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPT- 102 (461)
Q Consensus 24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~- 102 (461)
++|.+ .+.....++|.||++||++|+.+.|.+++++..+ +.+.+..||.+++++++++|+|.++||+++|++|+...
T Consensus 13 ~~~~~-~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~ 90 (113)
T cd02975 13 EEFFK-EMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG 90 (113)
T ss_pred HHHHH-HhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence 34555 4566667899999999999999999999999886 66999999999999999999999999999999764433
Q ss_pred -cccCCcchhHHHHHHHHHH
Q psy17502 103 -PYQGARTADAIIDVALEAI 121 (461)
Q Consensus 103 -~y~g~~~~~~i~~~i~~~~ 121 (461)
+|.|..+..++.+|+...+
T Consensus 91 ~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 91 IRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred EEEEecCchHHHHHHHHHHH
Confidence 7889999999999998764
No 85
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.58 E-value=8.8e-15 Score=112.87 Aligned_cols=84 Identities=25% Similarity=0.593 Sum_probs=76.5
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-ccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC
Q psy17502 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG 232 (461)
Q Consensus 154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g 232 (461)
..+++++|.||++||++|+.+.|.|+++++.++ .+.|+.+|++ .++.++++|+|.++||+++|+++ ....|.|
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-----~~~~~~G 89 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-----PRVRYNG 89 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-----ceeEecC
Confidence 467899999999999999999999999999986 4888999988 78999999999999999999977 4578999
Q ss_pred CCCHHHHHHHH
Q psy17502 233 GRTSQDIVTWA 243 (461)
Q Consensus 233 ~~~~~~i~~fi 243 (461)
.++.+.|.+||
T Consensus 90 ~~~~~~l~~f~ 100 (100)
T cd02999 90 TRTLDSLAAFY 100 (100)
T ss_pred CCCHHHHHhhC
Confidence 99999999885
No 86
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.58 E-value=9.8e-15 Score=111.76 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=69.9
Q ss_pred cchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCC
Q psy17502 24 SNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNP 101 (461)
Q Consensus 24 ~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~ 101 (461)
+.+++.+.+ ++++++|.|+|+||++|+.+.|.++++|+++++.+.|++||.++.+++++.|+|+..||+++|++|+..
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 456774443 478999999999999999999999999999977799999999999999999999999999999988655
No 87
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.58 E-value=1.8e-14 Score=113.08 Aligned_cols=101 Identities=48% Similarity=0.917 Sum_probs=89.5
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcc-cHhhhhhcCcccccEEEE
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATV-HQRIAGEFNIRGYPTIKF 216 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~-~~~l~~~~~i~~~P~i~~ 216 (461)
+..++.+++++.+.+.+++++|.||++||++|+.+.+.|.++++.++ +.+.++.+|++. +..++++++|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 46788889988765566699999999999999999999999999987 469999999999 899999999999999999
Q ss_pred EcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 217 FSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
|.++.+ ....|.|.++.++|.+||
T Consensus 82 ~~~~~~---~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGST---EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCC---CccccCCccCHHHHHhhC
Confidence 997742 566799999999999885
No 88
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.57 E-value=1.3e-14 Score=110.78 Aligned_cols=92 Identities=28% Similarity=0.556 Sum_probs=83.4
Q ss_pred cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCcc
Q psy17502 24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTP 103 (461)
Q Consensus 24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~ 103 (461)
++|.+ .++.+++++|+||++||++|+.+.+.+.++++. .+.+.++.+|+++++++++++++.++|++++|.+|+....
T Consensus 1 ~~~~~-~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 1 EEFEE-LIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDR 78 (93)
T ss_pred CchHH-HHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEE
Confidence 35676 677779999999999999999999999999988 5679999999999999999999999999999999887888
Q ss_pred ccCCcchhHHHHHH
Q psy17502 104 YQGARTADAIIDVA 117 (461)
Q Consensus 104 y~g~~~~~~i~~~i 117 (461)
+.|..+.+.|..|+
T Consensus 79 ~~g~~~~~~l~~~i 92 (93)
T cd02947 79 VVGADPKEELEEFL 92 (93)
T ss_pred EecCCCHHHHHHHh
Confidence 99988888888876
No 89
>PHA02278 thioredoxin-like protein
Probab=99.57 E-value=1.9e-14 Score=110.77 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=80.3
Q ss_pred hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc----HhhhhhcCcccccEEEEEcCC
Q psy17502 145 DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH----QRIAGEFNIRGYPTIKFFSPG 220 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~----~~l~~~~~i~~~P~i~~~~~~ 220 (461)
.++|.+.+ +++.+++|.|||+||++|+.+.|.++++++.+...+.|+.+|++.+ ++++++|+|.+.||+++|++|
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 46677765 6789999999999999999999999999988666678899998875 689999999999999999998
Q ss_pred CCCCcCcccccCCCCHHHHHHH
Q psy17502 221 SRSASDAQEYNGGRTSQDIVTW 242 (461)
Q Consensus 221 ~~~~~~~~~y~g~~~~~~i~~f 242 (461)
....+..|..+.+.|.+|
T Consensus 83 ----~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 ----QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred ----EEEEEEeCCCCHHHHHhh
Confidence 466778898888888775
No 90
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.57 E-value=2.5e-14 Score=112.01 Aligned_cols=99 Identities=46% Similarity=0.937 Sum_probs=88.0
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcc--cHhhhhhcCcccccEEE
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATV--HQRIAGEFNIRGYPTIK 215 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~--~~~l~~~~~i~~~P~i~ 215 (461)
++.++..++++.+ +.+++++|.||++||++|+.+.+.+.++++.+. +.+.++.+|++. +..++++++|.++|+++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678888998876 556699999999999999999999999999887 668999999988 89999999999999999
Q ss_pred EEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 216 FFSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
+|++| .....|.|..+.+.+.+|+
T Consensus 81 ~~~~g----~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENG----KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCC----CeeEEeCCCCCHHHHHhhC
Confidence 99987 3567899999999998885
No 91
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.56 E-value=3e-13 Score=120.18 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=132.2
Q ss_pred CCeEEEEEeC---CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCc-ccc
Q psy17502 156 DDIWLVEFFA---PWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDA-QEY 230 (461)
Q Consensus 156 ~~~~~v~f~~---~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~-~~y 230 (461)
+...++.|++ +||++|+.+.+.+++++..+.. .+.++.+|.+++++++++|+|.++||+++|++|. .. .+|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~----~~~~~~ 94 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK----DGGIRY 94 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe----eeEEEE
Confidence 4556777888 9999999999999999998843 2556667766899999999999999999999882 33 478
Q ss_pred cCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHh-cCCCeEEEEE-eCCccccChhhHHHHHHHHHHHHHhccCc
Q psy17502 231 NGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEAC-EDHPLCIVAV-LPHILDCQSSCRNNYLEILQKLGDKYKQK 308 (461)
Q Consensus 231 ~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~va~~~~~~ 308 (461)
.|..+.+.+.+||..... ..+ .-..+. ......+. ...++.++.| .++ ....+.....+++++.++. .
T Consensus 95 ~G~~~~~~l~~~i~~~~~-~~~--~~~~L~-~~~~~~l~~~~~pv~I~~F~a~~-----C~~C~~~~~~l~~l~~~~~-~ 164 (215)
T TIGR02187 95 TGIPAGYEFAALIEDIVR-VSQ--GEPGLS-EKTVELLQSLDEPVRIEVFVTPT-----CPYCPYAVLMAHKFALAND-K 164 (215)
T ss_pred eecCCHHHHHHHHHHHHH-hcC--CCCCCC-HHHHHHHHhcCCCcEEEEEECCC-----CCCcHHHHHHHHHHHHhcC-c
Confidence 898888899999876641 111 112332 32222222 3455555534 343 3334455577888887753 3
Q ss_pred ceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHH
Q psy17502 309 VWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRD 365 (461)
Q Consensus 309 ~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~ 365 (461)
+ .+..+|.+..+++++.+|+. ..|++++.+.. .+ +.|..+.+.+.+|+++
T Consensus 165 i-~~~~vD~~~~~~~~~~~~V~--~vPtl~i~~~~-~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 165 I-LGEMIEANENPDLAEKYGVM--SVPKIVINKGV-EE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred e-EEEEEeCCCCHHHHHHhCCc--cCCEEEEecCC-EE---EECCCCHHHHHHHHHh
Confidence 3 45566777788999999998 68999987432 22 4566778889888864
No 92
>PRK10996 thioredoxin 2; Provisional
Probab=99.56 E-value=5.1e-14 Score=115.67 Aligned_cols=103 Identities=31% Similarity=0.654 Sum_probs=92.5
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS 218 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~ 218 (461)
.++.++.+++++.+ +++++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.+++++++|+|.++|++++|+
T Consensus 36 ~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 36 EVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFK 114 (139)
T ss_pred CCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEE
Confidence 46678888998865 66899999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 219 PGSRSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
+| .....+.|..+.+.|.+|+.+.
T Consensus 115 ~G----~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 115 NG----QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred CC----EEEEEEcCCCCHHHHHHHHHHh
Confidence 77 4566788999999999999764
No 93
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.56 E-value=2.1e-14 Score=114.54 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=81.7
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-----------hhHhhc
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-----------SLSSSH 84 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-----------~l~~~~ 84 (461)
..+..++.++|.+ .+++++.++|+|+++||++|+.+.|.+.+++++ .++.+..||.+.++ ++.+++
T Consensus 6 ~~~~~it~~~~~~-~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 6 KGLEVTTVVRALE-ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ccceecCHHHHHH-HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 4567888899999 788888999999999999999999999999998 34667778877543 455666
Q ss_pred C----CCCccEEEEEcCCCCCccccC-CcchhHHHHHH
Q psy17502 85 G----VTGFPTVKIFSDKRNPTPYQG-ARTADAIIDVA 117 (461)
Q Consensus 85 ~----i~~~P~l~~~~~g~~~~~y~g-~~~~~~i~~~i 117 (461)
+ |.++||+++|++|+.+.+..| ..+.++|.+|+
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 5 556999999999988888888 55688888775
No 94
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.56 E-value=1.5e-14 Score=111.96 Aligned_cols=75 Identities=15% Similarity=0.284 Sum_probs=68.5
Q ss_pred hhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502 146 SNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220 (461)
Q Consensus 146 ~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~ 220 (461)
+++++.+.. .+.+++|.|+++||++|+.+.|.++++|..+.+.+.|+.||++++++++++|+|.+.||+++|++|
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 456666543 577999999999999999999999999999988899999999999999999999999999999998
No 95
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.54 E-value=2e-14 Score=122.20 Aligned_cols=89 Identities=18% Similarity=0.302 Sum_probs=77.4
Q ss_pred CCceEcCc-cchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502 16 SDVIKLTT-SNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV 92 (461)
Q Consensus 16 ~~v~~l~~-~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l 92 (461)
..+.+++. ++|.+.+.+.+ .+++|.||++||++|+.+.|.+.++|.++. .+.|++||+++. +++.+|+|..+||+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 56889999 99999443333 399999999999999999999999999986 499999999987 89999999999999
Q ss_pred EEEcCCCCCccccC
Q psy17502 93 KIFSDKRNPTPYQG 106 (461)
Q Consensus 93 ~~~~~g~~~~~y~g 106 (461)
++|++|+.+.++.|
T Consensus 140 llyk~G~~v~~~vG 153 (175)
T cd02987 140 LVYKGGELIGNFVR 153 (175)
T ss_pred EEEECCEEEEEEec
Confidence 99999976655544
No 96
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.54 E-value=5.4e-13 Score=116.18 Aligned_cols=173 Identities=23% Similarity=0.303 Sum_probs=139.6
Q ss_pred hhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCC-CCCccccCC-cchhHHHHHHHHHHhhhhcCC
Q psy17502 51 SFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDK-RNPTPYQGA-RTADAIIDVALEAIRQKVKGG 128 (461)
Q Consensus 51 ~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g-~~~~~y~g~-~~~~~i~~~i~~~~~~~~~~~ 128 (461)
.....|.++|+.+.+.+.|+.+. ++++++++++.. |++++|+.+ +....|.|. .+.+.|..||.....
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~------ 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF------ 76 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS------
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc------
Confidence 35678999999999889999988 677999999999 999999963 456889998 899999999999863
Q ss_pred CCCCCCCCCCceeEcChhhhhhhhhcCCCe-EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcC
Q psy17502 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFN 207 (461)
Q Consensus 129 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~ 207 (461)
+.+..++.+++..+. ..+.+ +++.|..........+...+..+|+.+++.+.|+.+|++..+.+++.+|
T Consensus 77 ---------P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~ 146 (184)
T PF13848_consen 77 ---------PLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFG 146 (184)
T ss_dssp ---------TSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTT
T ss_pred ---------ccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcC
Confidence 347899999999875 55544 6667765544555677788999999999999999999998888999999
Q ss_pred cc--cccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502 208 IR--GYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 208 i~--~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
+. ..|+++++..... .....+.|..+.++|.+|+.+
T Consensus 147 i~~~~~P~~vi~~~~~~--~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 147 IDEDDLPALVIFDSNKG--KYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTSSSSEEEEEETTTS--EEEE--SSCGCHHHHHHHHHH
T ss_pred CCCccCCEEEEEECCCC--cEEcCCCCCCCHHHHHHHhcC
Confidence 98 7899999985421 112224788999999999863
No 97
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.53 E-value=1e-13 Score=107.85 Aligned_cols=99 Identities=34% Similarity=0.637 Sum_probs=87.3
Q ss_pred ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCC
Q psy17502 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRS 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~ 223 (461)
+.+++.+.+.+.+.+++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+..++++|++.++|++++|++|
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g--- 78 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG--- 78 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC---
Confidence 56677777665567999999999999999999999999999987899999999999999999999999999999877
Q ss_pred CcCcccccCCCCHHHHHHHHHhh
Q psy17502 224 ASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 224 ~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
.....+.|..+.+.+..|+.++
T Consensus 79 -~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 -KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred -cEeeeecCCCCHHHHHHHHHhh
Confidence 3456678888999999999764
No 98
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.52 E-value=1.8e-13 Score=108.39 Aligned_cols=101 Identities=36% Similarity=0.827 Sum_probs=85.2
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcc--cHhhhhhcCcccccE
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATV--HQRIAGEFNIRGYPT 213 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~--~~~l~~~~~i~~~P~ 213 (461)
+++.++..+|.+.+.+.+++++|.||++||++|+.+.+.|.+++..+++ .+.|+.+||+. +.++++++++.++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 4788999999998877778999999999999999999999999998863 59999999864 678999999999999
Q ss_pred EEEEcCCCCCCcCcccccCC-CCHHHH
Q psy17502 214 IKFFSPGSRSASDAQEYNGG-RTSQDI 239 (461)
Q Consensus 214 i~~~~~~~~~~~~~~~y~g~-~~~~~i 239 (461)
+++|+++.+.......|+|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 99999886543345677776 666655
No 99
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.52 E-value=8e-14 Score=112.93 Aligned_cols=99 Identities=16% Similarity=0.276 Sum_probs=83.0
Q ss_pred chhHHHhcCC-CeEEEEEECCCCHhHHhhHHHHH---HHHHHcCCceEEEEEecCCc-------------hhhHhhcCCC
Q psy17502 25 NFDDKVIKSD-EVWIVEYYAPWCGHCQSFKDEYM---KLATALKGVVKVGAVNADEE-------------KSLSSSHGVT 87 (461)
Q Consensus 25 ~f~~~~~~~~-~~~lv~f~~~~c~~C~~~~~~~~---~~a~~~~~~v~~~~vd~~~~-------------~~l~~~~~i~ 87 (461)
.+.+ .++++ ++++|.||++||++|+.+.|.+. .+.+.+.+.+.++.||.+.+ .+++.+|+|.
T Consensus 5 ~~~~-a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 5 DLAE-AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHH-HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3445 67788 99999999999999999999884 56666666788999998864 6899999999
Q ss_pred CccEEEEEcC--CCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502 88 GFPTVKIFSD--KRNPTPYQGARTADAIIDVALEAIRQK 124 (461)
Q Consensus 88 ~~P~l~~~~~--g~~~~~y~g~~~~~~i~~~i~~~~~~~ 124 (461)
++||++++.. |+...++.|..+.+.+.+++.......
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 9999999995 577788999999999999998876443
No 100
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.51 E-value=1.5e-13 Score=106.98 Aligned_cols=95 Identities=15% Similarity=0.236 Sum_probs=78.4
Q ss_pred ChhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH---hhhhhcCcccccEEEEEcC
Q psy17502 144 TDSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ---RIAGEFNIRGYPTIKFFSP 219 (461)
Q Consensus 144 ~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~---~l~~~~~i~~~P~i~~~~~ 219 (461)
+.+++++.+.+. +++++|.||++||++|+.+.|.+.++++.+ +.+.|+.+|++++. +++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 456777776543 789999999999999999999999999999 67999999988763 7999999999999999988
Q ss_pred CCCCCcCcccccCCCCHHHHHHHHH
Q psy17502 220 GSRSASDAQEYNGGRTSQDIVTWAL 244 (461)
Q Consensus 220 ~~~~~~~~~~y~g~~~~~~i~~fi~ 244 (461)
| .....+.|. ....|.+-+.
T Consensus 81 G----~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 81 G----EKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred C----eEEEEEeCC-CHHHHHHHHH
Confidence 8 356677784 4566665554
No 101
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.51 E-value=1.3e-13 Score=107.17 Aligned_cols=98 Identities=50% Similarity=0.959 Sum_probs=86.9
Q ss_pred EcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219 (461)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~--~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~ 219 (461)
.++.+++.+.+ .+.++++|.|+++||++|+.+.+.|.++++.+ .+.+.|+.+|++.+..++++|+|.++|++++|++
T Consensus 2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 46788898876 44559999999999999999999999999999 5789999999999999999999999999999997
Q ss_pred CCCCCcCcccccCCCCHHHHHHHH
Q psy17502 220 GSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 220 ~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
++ .....|.|..+.++|.+|+
T Consensus 81 ~~---~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GS---KEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CC---cccccCCCCcCHHHHHhhC
Confidence 74 2677899999999998875
No 102
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.51 E-value=1.1e-13 Score=108.05 Aligned_cols=87 Identities=15% Similarity=0.230 Sum_probs=77.8
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCC--CccEEEEEcC--CCCCccccCCcc
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVT--GFPTVKIFSD--KRNPTPYQGART 109 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~P~l~~~~~--g~~~~~y~g~~~ 109 (461)
+.++++.|+++||++|+.+.|.+.++|+++++++.|+.||+++.+++++.+|+. ++|+++++++ |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 679999999999999999999999999999999999999999999999999999 9999999997 545443345568
Q ss_pred hhHHHHHHHHH
Q psy17502 110 ADAIIDVALEA 120 (461)
Q Consensus 110 ~~~i~~~i~~~ 120 (461)
.+.|.+|+...
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 103
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.50 E-value=2.6e-13 Score=105.99 Aligned_cols=93 Identities=49% Similarity=1.007 Sum_probs=81.2
Q ss_pred hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCC
Q psy17502 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSR 222 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~ 222 (461)
++|++. ..+.+++|.||++||++|+.+.+.|.++++.+++ .+.++.+|++....++++++|.++|++++|+++
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-- 82 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-- 82 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--
Confidence 566663 3467999999999999999999999999999853 499999999999999999999999999999765
Q ss_pred CCcCcccccCCCCHHHHHHHHHh
Q psy17502 223 SASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 223 ~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
....|.|..+.++|.+|+.+
T Consensus 83 ---~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 83 ---LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred ---CceeecCCCCHHHHHHHHHh
Confidence 45678999999999999975
No 104
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.49 E-value=2.7e-13 Score=104.14 Aligned_cols=96 Identities=13% Similarity=0.179 Sum_probs=85.4
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPW--CGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
...++..+|++.+ +.+.+++|.|+++| |++|..+.|.+.++|+.+.+.+.|+.+|++.+++++.+|+|.+.||+++|
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f 90 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF 90 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 5578999999775 77889999999997 99999999999999999988899999999999999999999999999999
Q ss_pred cCCCCCCcCcccccCCCCHHHHH
Q psy17502 218 SPGSRSASDAQEYNGGRTSQDIV 240 (461)
Q Consensus 218 ~~~~~~~~~~~~y~g~~~~~~i~ 240 (461)
++| .......|..+.+++.
T Consensus 91 kdG----k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 91 RDG----RYVGVLAGIRDWDEYV 109 (111)
T ss_pred ECC----EEEEEEeCccCHHHHh
Confidence 998 4566677877766653
No 105
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.49 E-value=2.3e-13 Score=131.39 Aligned_cols=108 Identities=30% Similarity=0.573 Sum_probs=92.3
Q ss_pred CCCCceeEcChhhhhhhhh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccH-hhh-hhcCcc
Q psy17502 135 GSSKAVVELTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQ-RIA-GEFNIR 209 (461)
Q Consensus 135 ~~~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~-~l~-~~~~i~ 209 (461)
.++..|+.|+.++|++.+. +.+++++|.||++||++|+.+.|.|+++|+.+++. +.|+.+|++.+. .++ ++|+|.
T Consensus 348 ~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~ 427 (463)
T TIGR00424 348 FDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 427 (463)
T ss_pred cCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC
Confidence 3566899999999999863 47789999999999999999999999999999764 899999998753 444 689999
Q ss_pred cccEEEEEcCCCCCCcCccccc-CCCCHHHHHHHHHh
Q psy17502 210 GYPTIKFFSPGSRSASDAQEYN-GGRTSQDIVTWALN 245 (461)
Q Consensus 210 ~~P~i~~~~~~~~~~~~~~~y~-g~~~~~~i~~fi~~ 245 (461)
++||+++|+++.. ....|. |.++.++|+.||..
T Consensus 428 ~~PTii~Fk~g~~---~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 428 SFPTILFFPKHSS---RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ccceEEEEECCCC---CceeCCCCCCCHHHHHHHHHh
Confidence 9999999998842 466797 58999999999964
No 106
>PLN02309 5'-adenylylsulfate reductase
Probab=99.48 E-value=2.8e-13 Score=130.87 Aligned_cols=108 Identities=30% Similarity=0.603 Sum_probs=94.0
Q ss_pred CCCCceeEcChhhhhhhhh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc-ccHhhhh-hcCcc
Q psy17502 135 GSSKAVVELTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT-VHQRIAG-EFNIR 209 (461)
Q Consensus 135 ~~~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~-~~~~l~~-~~~i~ 209 (461)
.++..|+.++.+++++.+. +.+++++|.||++||++|+.+.+.|.++|+.+.+ .+.|+.+|++ .+..++. +|+|.
T Consensus 342 ~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 342 FNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred cCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 3556788999999998763 5678999999999999999999999999999975 4999999998 7788886 69999
Q ss_pred cccEEEEEcCCCCCCcCcccccC-CCCHHHHHHHHHh
Q psy17502 210 GYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWALN 245 (461)
Q Consensus 210 ~~P~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~fi~~ 245 (461)
++||+++|+++.. ....|.| .++.++|+.||..
T Consensus 422 ~~PTil~f~~g~~---~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 422 SFPTILLFPKNSS---RPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred eeeEEEEEeCCCC---CeeecCCCCcCHHHHHHHHHH
Confidence 9999999998843 5677985 7999999999975
No 107
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.48 E-value=4.2e-13 Score=104.20 Aligned_cols=96 Identities=18% Similarity=0.384 Sum_probs=80.9
Q ss_pred cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCC
Q psy17502 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGS 221 (461)
Q Consensus 143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~ 221 (461)
-+.+++++.+ +++++++|.||++||++|+.+.+.+.+++..+++ .+.|+.+|++ +.+++++|+|.++|++++|++|
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g- 81 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG- 81 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC-
Confidence 3677888865 6788999999999999999999999999999875 4889999988 7788999999999999999988
Q ss_pred CCCcCcccccCCCCHHHHHHHHHh
Q psy17502 222 RSASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 222 ~~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
.......|. +.+.+.++|.+
T Consensus 82 ---~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 82 ---ELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred ---EEEEEEecC-ChHHHHHHHhh
Confidence 345555664 77888888753
No 108
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.48 E-value=1.7e-13 Score=118.07 Aligned_cols=88 Identities=13% Similarity=0.230 Sum_probs=76.4
Q ss_pred CCceEcCccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502 16 SDVIKLTTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 93 (461)
..|.+++.++|...+.+.+ .+++|.||++||++|+.+.|.|.++|.++. .+.|++||+++. +.+|+++++||++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTll 157 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTIL 157 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEEE
Confidence 5689999999998565543 489999999999999999999999999986 499999999754 6899999999999
Q ss_pred EEcCCCCCccccCC
Q psy17502 94 IFSDKRNPTPYQGA 107 (461)
Q Consensus 94 ~~~~g~~~~~y~g~ 107 (461)
+|++|+.+..+.|.
T Consensus 158 iyk~G~~v~~ivG~ 171 (192)
T cd02988 158 VYRNGDIVKQFIGL 171 (192)
T ss_pred EEECCEEEEEEeCc
Confidence 99999877666653
No 109
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.47 E-value=5.8e-13 Score=109.81 Aligned_cols=92 Identities=24% Similarity=0.504 Sum_probs=79.2
Q ss_pred CCceeEcChhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCccc----
Q psy17502 137 SKAVVELTDSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRG---- 210 (461)
Q Consensus 137 ~~~v~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~---- 210 (461)
...+..++.++|++.+..+ +.+++|.||++||++|+.+.|.|.++++.+.+ .+.|+.||++++++++++|+|.+
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v 106 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS 106 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence 3567889999999876433 56899999999999999999999999999874 59999999999999999999988
Q ss_pred --ccEEEEEcCCCCCCcCcccccC
Q psy17502 211 --YPTIKFFSPGSRSASDAQEYNG 232 (461)
Q Consensus 211 --~P~i~~~~~~~~~~~~~~~y~g 232 (461)
+||+++|++| ....++.|
T Consensus 107 ~~~PT~ilf~~G----k~v~r~~G 126 (152)
T cd02962 107 KQLPTIILFQGG----KEVARRPY 126 (152)
T ss_pred CCCCEEEEEECC----EEEEEEec
Confidence 9999999988 34555554
No 110
>KOG0908|consensus
Probab=99.46 E-value=2.5e-13 Score=115.69 Aligned_cols=98 Identities=23% Similarity=0.470 Sum_probs=84.6
Q ss_pred CccchhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502 22 TTSNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN 100 (461)
Q Consensus 22 ~~~~f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~ 100 (461)
++.+|...+- ...+.++|.|+|.|||+|+++.|.|..++.++.+ ..|.+||.++.+..+..+||...||+++|++|.+
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 4577777332 2446999999999999999999999999999966 8999999999999999999999999999999999
Q ss_pred CccccCCcchhHHHHHHHHHH
Q psy17502 101 PTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 101 ~~~y~g~~~~~~i~~~i~~~~ 121 (461)
+..++|. ++..+.+-+.+++
T Consensus 87 id~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 87 IDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred eeeecCC-CHHHHHHHHHHHh
Confidence 9889885 4556777777765
No 111
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.45 E-value=7.1e-13 Score=105.07 Aligned_cols=80 Identities=24% Similarity=0.410 Sum_probs=72.3
Q ss_pred ceeEcChhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502 139 AVVELTDSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF 216 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~ 216 (461)
.+..++.++|.+.+.+. +.+++|.||++||++|+.+.+.++++|..+. .+.|+.+|++.+ +++++|+|.++|++++
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 46788889998887555 3899999999999999999999999999985 589999999888 9999999999999999
Q ss_pred EcCC
Q psy17502 217 FSPG 220 (461)
Q Consensus 217 ~~~~ 220 (461)
|++|
T Consensus 83 f~~G 86 (113)
T cd02957 83 YKNG 86 (113)
T ss_pred EECC
Confidence 9998
No 112
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.44 E-value=5e-13 Score=99.56 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=71.8
Q ss_pred EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHH
Q psy17502 37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV 116 (461)
Q Consensus 37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~ 116 (461)
.+..||++||++|+.+.|.+++++++++..+.+..||+++++++++++|+.++|++++ +|+ .++.|..+.+.+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4678999999999999999999999998789999999999999999999999999986 554 378899999999988
Q ss_pred HHHH
Q psy17502 117 ALEA 120 (461)
Q Consensus 117 i~~~ 120 (461)
+.+.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8753
No 113
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.42 E-value=6.1e-13 Score=104.42 Aligned_cols=79 Identities=15% Similarity=0.296 Sum_probs=67.6
Q ss_pred CccchhHHHhcC--CCeEEEEEEC-------CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC-------chhhHhhcC
Q psy17502 22 TTSNFDDKVIKS--DEVWIVEYYA-------PWCGHCQSFKDEYMKLATALKGVVKVGAVNADE-------EKSLSSSHG 85 (461)
Q Consensus 22 ~~~~f~~~~~~~--~~~~lv~f~~-------~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-------~~~l~~~~~ 85 (461)
+.++|.+ .+.. +++++|.||| +||++|+.+.|.+++++.++++++.|++||+++ +.+++.+++
T Consensus 8 ~~~~f~~-~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 8 GYEEFLK-LLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred CHHHHHH-HHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence 3566777 4443 5799999999 999999999999999999998779999999976 358999999
Q ss_pred CC-CccEEEEEcCCCCC
Q psy17502 86 VT-GFPTVKIFSDKRNP 101 (461)
Q Consensus 86 i~-~~P~l~~~~~g~~~ 101 (461)
|. ++||+++|+.|+.+
T Consensus 87 I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 87 LTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cccCCCEEEEEcCCcee
Confidence 98 99999999876543
No 114
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.41 E-value=1.6e-12 Score=100.13 Aligned_cols=92 Identities=30% Similarity=0.532 Sum_probs=82.3
Q ss_pred hhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCc
Q psy17502 148 FEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDA 227 (461)
Q Consensus 148 ~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~ 227 (461)
+...+.+.++++++.|+++||+.|+.+.+.++++++.+.+.+.++.+|++++++++.++++.++|++++|++| ...
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g----~~v 80 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK----ELV 80 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECC----eEE
Confidence 3445567889999999999999999999999999999988899999999999999999999999999999876 456
Q ss_pred ccccCCCCHHHHHHHH
Q psy17502 228 QEYNGGRTSQDIVTWA 243 (461)
Q Consensus 228 ~~y~g~~~~~~i~~fi 243 (461)
..+.|..+.+.|.+|+
T Consensus 81 ~~~~g~~~~~~~~~~l 96 (97)
T cd02949 81 KEISGVKMKSEYREFI 96 (97)
T ss_pred EEEeCCccHHHHHHhh
Confidence 7788988899988886
No 115
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.41 E-value=2.4e-12 Score=101.58 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=81.4
Q ss_pred ceeEcCh-hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 139 AVVELTD-SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 139 ~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
.+..+++ ++|.+.+ .++.+++|.||++||++|+.+.+.+.++++.+. .+.|+.+|+++..+++++|+|.+.|++++|
T Consensus 5 ~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 3566766 8888876 567899999999999999999999999999885 589999999999999999999999999999
Q ss_pred cCCCCCCc--Cccccc--CCCCHHHHHHHH
Q psy17502 218 SPGSRSAS--DAQEYN--GGRTSQDIVTWA 243 (461)
Q Consensus 218 ~~~~~~~~--~~~~y~--g~~~~~~i~~fi 243 (461)
++|..... ...... ++.+.+++..|+
T Consensus 83 k~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 83 KNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred ECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 98831110 011122 346677777665
No 116
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.41 E-value=2e-12 Score=101.06 Aligned_cols=94 Identities=23% Similarity=0.365 Sum_probs=79.0
Q ss_pred hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCcc----cHhhhhhcCcccccEEEEEc
Q psy17502 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATV----HQRIAGEFNIRGYPTIKFFS 218 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~----~~~l~~~~~i~~~P~i~~~~ 218 (461)
+++.+.+ +++++++|.|+++||++|+.+.+.+ .+++..+.+.+.++.+|++. ..+++++|++.++|++++|+
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 3455543 6789999999999999999999887 57888887789999999876 57899999999999999999
Q ss_pred C-CCCCCcCcccccCCCCHHHHHHHH
Q psy17502 219 P-GSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 219 ~-~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
+ ++ .....+.|..+.++|.+++
T Consensus 81 ~~~g---~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 81 PGGE---PEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCC---CCCcccccccCHHHHHHHh
Confidence 5 22 3667789999999998876
No 117
>KOG0907|consensus
Probab=99.40 E-value=1.7e-12 Score=99.89 Aligned_cols=85 Identities=31% Similarity=0.643 Sum_probs=72.9
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG 233 (461)
Q Consensus 154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~ 233 (461)
..+++++|.||++|||+|+.+.|.|.++|.++.+ +.|.++|+++..+++++++|...||+++|++| +....+-|.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g----~~~~~~vGa 93 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG----EEVDEVVGA 93 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECC----EEEEEEecC
Confidence 4468999999999999999999999999999987 99999999989999999999999999999998 456666665
Q ss_pred CCHHHHHHHHH
Q psy17502 234 RTSQDIVTWAL 244 (461)
Q Consensus 234 ~~~~~i~~fi~ 244 (461)
.. +.+.+.+.
T Consensus 94 ~~-~~l~~~i~ 103 (106)
T KOG0907|consen 94 NK-AELEKKIA 103 (106)
T ss_pred CH-HHHHHHHH
Confidence 32 35555554
No 118
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.36 E-value=6.8e-12 Score=101.15 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=68.6
Q ss_pred Chhhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE-EEcCC
Q psy17502 144 TDSNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK-FFSPG 220 (461)
Q Consensus 144 ~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~-~~~~~ 220 (461)
+.+++++.+. ..+++++|.|+++||++|+.+.|.+.++|+.+.+.+.|+.||+++.+++++.|+|.+.|+++ +|++|
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 5677887765 45779999999999999999999999999999888999999999999999999999776666 88887
No 119
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.35 E-value=7.4e-12 Score=96.53 Aligned_cols=94 Identities=24% Similarity=0.515 Sum_probs=77.0
Q ss_pred hhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCC
Q psy17502 145 DSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRS 223 (461)
Q Consensus 145 ~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~ 223 (461)
.+++++.+... +++++|.||++||++|+.+.+.+.+++..+.+.+.|+.+|+++..+++++|++.++|++++|++|
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g--- 78 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG--- 78 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC---
Confidence 45666665433 58999999999999999999999999999767899999999999999999999999999999877
Q ss_pred CcCcccccCCCCHHHHHHHH
Q psy17502 224 ASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 224 ~~~~~~y~g~~~~~~i~~fi 243 (461)
.....+.|. +.+.|.+.|
T Consensus 79 -~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 79 -TIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred -EEEEEEeCC-CHHHHHHhh
Confidence 344455553 556665544
No 120
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.34 E-value=1.3e-11 Score=101.61 Aligned_cols=106 Identities=18% Similarity=0.299 Sum_probs=84.0
Q ss_pred hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc--HhhhhhcCcccccEEEEEcCCCCC
Q psy17502 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH--QRIAGEFNIRGYPTIKFFSPGSRS 223 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~--~~l~~~~~i~~~P~i~~~~~~~~~ 223 (461)
.++++. ...+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.++++.. ..++++|+|.++|++++|..++
T Consensus 11 ~~~~~a-~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G-- 87 (142)
T cd02950 11 TPPEVA-LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG-- 87 (142)
T ss_pred CCHHHH-HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC--
Confidence 445554 36788999999999999999999999999999987788888776643 5789999999999999996432
Q ss_pred CcCcccccCCCCHHHHHHHHHhhccCCCCCCcc
Q psy17502 224 ASDAQEYNGGRTSQDIVTWALNKYTENVPPPEI 256 (461)
Q Consensus 224 ~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v 256 (461)
.....+.|....+.|.+++.....+ .++|..
T Consensus 88 -~~v~~~~G~~~~~~l~~~l~~l~~~-~~~~~~ 118 (142)
T cd02950 88 -NEEGQSIGLQPKQVLAQNLDALVAG-EPLPYA 118 (142)
T ss_pred -CEEEEEeCCCCHHHHHHHHHHHHcC-CCCCcc
Confidence 3556778988899999998876633 344443
No 121
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.34 E-value=7.8e-12 Score=97.90 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=89.1
Q ss_pred ceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHh---ccCcceEEEecccccchhHHHhhCCCCC
Q psy17502 256 IKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDK---YKQKVWGWIWSEAVAQPDLENVLEIGGF 332 (461)
Q Consensus 256 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~---~~~~~f~~v~~d~~~~~~~~~~lgl~~~ 332 (461)
|++++.++...++..+.+..++++ ++++.+.+...++++|++ ||+++ .|+++|.......++.||++..
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f-------~~~~~~~~~~~~~~vAk~~~~~kgki-~Fv~~d~~~~~~~~~~fgl~~~ 72 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH-------DKDDLESLKEFKQAVARQLISEKGAI-NFLTADGDKFRHPLLHLGKTPA 72 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe-------cchHHHHHHHHHHHHHHHHHhcCceE-EEEEEechHhhhHHHHcCCCHh
Confidence 356667777677767777777665 266778999999999999 99996 7888887777779999999977
Q ss_pred CCccEEEEccCc-cccccCCCCCCHHHHHHHHHHHhcCC
Q psy17502 333 GYPAMAVLNAKK-MKYSLLKGPFSYDGINEFLRDLSYGR 370 (461)
Q Consensus 333 ~~P~l~i~~~~~-~k~~~~~~~~~~~~i~~Fi~~~~~Gk 370 (461)
++|+++|.+..+ .||..+.++++.++|.+|++++++|+
T Consensus 73 ~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 73 DLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred HCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 899999999876 58875678899999999999999996
No 122
>PTZ00051 thioredoxin; Provisional
Probab=99.33 E-value=9.5e-12 Score=96.11 Aligned_cols=93 Identities=30% Similarity=0.602 Sum_probs=76.4
Q ss_pred eeEcC-hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502 140 VVELT-DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS 218 (461)
Q Consensus 140 v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~ 218 (461)
+..++ .+++.+. .+.+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++....++++|++.++|++++|+
T Consensus 2 v~~i~~~~~~~~~-~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFEST-LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHH-HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 34454 4566665 5778899999999999999999999999999874 5899999999999999999999999999999
Q ss_pred CCCCCCcCcccccCCCCHHHH
Q psy17502 219 PGSRSASDAQEYNGGRTSQDI 239 (461)
Q Consensus 219 ~~~~~~~~~~~y~g~~~~~~i 239 (461)
+| .....+.|. ..++|
T Consensus 80 ~g----~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 80 NG----SVVDTLLGA-NDEAL 95 (98)
T ss_pred CC----eEEEEEeCC-CHHHh
Confidence 87 355566774 44444
No 123
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.33 E-value=4.7e-12 Score=100.44 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=70.2
Q ss_pred HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-hhHhhcCCCC--ccEEEEEc-CCCCCc---
Q psy17502 30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-SLSSSHGVTG--FPTVKIFS-DKRNPT--- 102 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-~l~~~~~i~~--~P~l~~~~-~g~~~~--- 102 (461)
...+++++||.|||+||++|+.+.|.+.+.+........|..||.+.++ .+.++|++.+ +||+++|. +|+...
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhc
Confidence 5667889999999999999999999999877654333456666666554 4567899987 99999997 776654
Q ss_pred cccCCcchhHHHHHHHHHH
Q psy17502 103 PYQGARTADAIIDVALEAI 121 (461)
Q Consensus 103 ~y~g~~~~~~i~~~i~~~~ 121 (461)
...|..+...+.+.+...+
T Consensus 95 ~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 95 NKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred cCCCCccccccCCCHHHHH
Confidence 5677777777777666554
No 124
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.32 E-value=2.5e-10 Score=102.60 Aligned_cols=207 Identities=14% Similarity=0.268 Sum_probs=135.5
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhh------HHHHHH-HHHhc-CceEEEEEeCcccHhhhhhcCccc
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLE------PHWEKA-ASELE-GKVKLGAVDATVHQRIAGEFNIRG 210 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~------~~~~~~-a~~~~-~~i~f~~v~~~~~~~l~~~~~i~~ 210 (461)
-|+.|+..||.+.+ ...+..+|+||.+--+ .+... ..+-++ |+.+. ..+.||.||...+..+++++|+..
T Consensus 35 RVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 35 RVIDLNEKNFKRAL-KKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE 112 (383)
T ss_dssp -CEEE-TTTHHHHH-HH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred ceEEcchhHHHHHH-HhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence 37899999999975 6678888999987532 23332 223333 44443 469999999999999999999999
Q ss_pred ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhc-CCCeEEEEEeCCccccChh
Q psy17502 211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACE-DHPLCIVAVLPHILDCQSS 289 (461)
Q Consensus 211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~ 289 (461)
.++|.+|+.+ +...|+|.++++.++.||.... ..+|..+++...+..|.. ...+-+++++.. +
T Consensus 113 ~~SiyVfkd~-----~~IEydG~~saDtLVeFl~dl~-----edPVeiIn~~~e~~~Fe~ied~~klIGyFk~------~ 176 (383)
T PF01216_consen 113 EGSIYVFKDG-----EVIEYDGERSADTLVEFLLDLL-----EDPVEIINNKHELKAFERIEDDIKLIGYFKS------E 176 (383)
T ss_dssp TTEEEEEETT-----EEEEE-S--SHHHHHHHHHHHH-----SSSEEEE-SHHHHHHHHH--SS-EEEEE-SS------T
T ss_pred cCcEEEEECC-----cEEEecCccCHHHHHHHHHHhc-----ccchhhhcChhhhhhhhhcccceeEEEEeCC------C
Confidence 9999999998 8899999999999999999877 455888888887776654 335677777642 2
Q ss_pred hHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccc-cccCCCCCCHHHHHHHHHHHhc
Q psy17502 290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMK-YSLLKGPFSYDGINEFLRDLSY 368 (461)
Q Consensus 290 ~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k-~~~~~~~~~~~~i~~Fi~~~~~ 368 (461)
..+ ....+.++|..|...+ .|.. ...+.+++.+|+. .--+-++.+--.. -.++....+.+.|.+||++...
T Consensus 177 ~s~-~yk~FeeAAe~F~p~I-kFfA---tfd~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r 248 (383)
T PF01216_consen 177 DSE-HYKEFEEAAEHFQPYI-KFFA---TFDKKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR 248 (383)
T ss_dssp TSH-HHHHHHHHHHHCTTTS-EEEE---E-SHHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred CcH-HHHHHHHHHHhhcCce-eEEE---EecchhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence 222 4578899999999877 3321 1356789999996 4556666554322 2334457899999999999864
Q ss_pred CCC
Q psy17502 369 GRG 371 (461)
Q Consensus 369 Gkl 371 (461)
-.+
T Consensus 249 ptl 251 (383)
T PF01216_consen 249 PTL 251 (383)
T ss_dssp -SE
T ss_pred hHh
Confidence 433
No 125
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.31 E-value=1.2e-11 Score=94.83 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=67.3
Q ss_pred hhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502 146 SNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220 (461)
Q Consensus 146 ~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~ 220 (461)
+++++.+.+ .+++++|.|+++||++|+.+.|.+.++|..+++.+.|+.||+++.++++++|+|...|+.++|++|
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 455555543 488999999999999999999999999999976699999999999999999999989999999987
No 126
>KOG1731|consensus
Probab=99.29 E-value=1.6e-11 Score=117.22 Aligned_cols=132 Identities=29% Similarity=0.630 Sum_probs=100.5
Q ss_pred CCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCc--ccHhhhhhcCcc
Q psy17502 135 GSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE---GKVKLGAVDAT--VHQRIAGEFNIR 209 (461)
Q Consensus 135 ~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~---~~i~f~~v~~~--~~~~l~~~~~i~ 209 (461)
.+.++|+.|+..+|...+..++...+|.||++|||+|..+.|.|+++|+.+. +-+.++.|||. ++..+|++++|.
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 3458899999999999988877899999999999999999999999999987 45889999995 478899999999
Q ss_pred cccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccC------CCCCCcceeecCHHHHH
Q psy17502 210 GYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTE------NVPPPEIKQIVSEATFK 266 (461)
Q Consensus 210 ~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~------~~~~p~v~~~~~~~~~~ 266 (461)
++|+|.+|.++.........+.|+....+|...+.+...+ ...-|.+..+.+.+.+.
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~ 178 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLE 178 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHH
Confidence 9999999998755433345566666566666665543321 11345555554444443
No 127
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.28 E-value=3e-10 Score=115.65 Aligned_cols=187 Identities=18% Similarity=0.218 Sum_probs=148.9
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc-CCCC-CccccCCcch
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS-DKRN-PTPYQGARTA 110 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~-~g~~-~~~y~g~~~~ 110 (461)
.+++.|+.|+.+.|..|..+..-+++++ .+.+++.+-..|..++++++++|++...|++.+++ +|.. -.+|.|.-..
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 4456888999999999999998888888 56778999899999999999999999999999995 4433 3789999999
Q ss_pred hHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCe-EEEEEeCCCChhhhhhhHHHHHHHHHhcCce
Q psy17502 111 DAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKV 189 (461)
Q Consensus 111 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i 189 (461)
.++..||...+.-. ..-..++.+..+.. ..-+++ .+-.|.+++|++|......+.++|... +.+
T Consensus 444 ~Ef~s~i~~i~~~~-------------~~~~~l~~~~~~~i-~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i 508 (555)
T TIGR03143 444 HELNSFILALYNAA-------------GPGQPLGEELLEKI-KKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNV 508 (555)
T ss_pred HhHHHHHHHHHHhc-------------CCCCCCCHHHHHHH-HhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCc
Confidence 99999998876322 11224555544443 333444 455678999999999999999998876 378
Q ss_pred EEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 190 KLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 190 ~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
..-.+|.+..++++++|+|.++|++++ + ....+.|..+.++|..|+
T Consensus 509 ~~~~i~~~~~~~~~~~~~v~~vP~~~i--~------~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 509 EAEMIDVSHFPDLKDEYGIMSVPAIVV--D------DQQVYFGKKTIEEMLELI 554 (555)
T ss_pred eEEEEECcccHHHHHhCCceecCEEEE--C------CEEEEeeCCCHHHHHHhh
Confidence 888899999999999999999999988 2 234577988999998886
No 128
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.27 E-value=3.7e-11 Score=94.89 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=76.2
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG 233 (461)
Q Consensus 154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~ 233 (461)
..+..++|.|+++||++|+.+.+.+++++..+ +.+.|..+|.+++++++.+|+|.+.|++++|+++.. .....|.|.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~--~~~~~~~G~ 96 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGK--DGGIRYYGL 96 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCee--cceEEEEec
Confidence 44566888889999999999999999999877 679999999999999999999999999999997632 123368888
Q ss_pred CCHHHHHHHHHhh
Q psy17502 234 RTSQDIVTWALNK 246 (461)
Q Consensus 234 ~~~~~i~~fi~~~ 246 (461)
....++.+||...
T Consensus 97 ~~~~el~~~i~~i 109 (113)
T cd02975 97 PAGYEFASLIEDI 109 (113)
T ss_pred CchHHHHHHHHHH
Confidence 8888888888653
No 129
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.27 E-value=3.7e-11 Score=102.30 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=83.3
Q ss_pred CCceeEcCh-hhhhhhhhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccE
Q psy17502 137 SKAVVELTD-SNFEKLVYNSD--DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT 213 (461)
Q Consensus 137 ~~~v~~l~~-~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~ 213 (461)
-..+..++. ++|.+.+.+.+ .+++|.||++||++|+.+.+.+.++|..+. .+.|+.||++.. .++.+|+|...||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 345778888 99988875543 489999999999999999999999999984 799999999876 8999999999999
Q ss_pred EEEEcCCCCCCcCccccc-------CCCCHHHHHHHHHh
Q psy17502 214 IKFFSPGSRSASDAQEYN-------GGRTSQDIVTWALN 245 (461)
Q Consensus 214 i~~~~~~~~~~~~~~~y~-------g~~~~~~i~~fi~~ 245 (461)
+++|++|. ....+. ++++.+.|..|+.+
T Consensus 139 lllyk~G~----~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGE----LIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCE----EEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999883 222221 24677777777654
No 130
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.25 E-value=4.3e-11 Score=95.18 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=74.3
Q ss_pred CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHH-H--HHHHHHcCCceEEEEEecCCchhhHhh--------cCCCCcc
Q psy17502 22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDE-Y--MKLATALKGVVKVGAVNADEEKSLSSS--------HGVTGFP 90 (461)
Q Consensus 22 ~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~-~--~~~a~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~~P 90 (461)
+++.+.. ..++++++||.|+++||+.|+.+.+. | .++++.+...+.+++||.++.++++++ ||+.|+|
T Consensus 4 ~~eal~~-Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEK-ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHH-HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 3455666 78899999999999999999999874 3 467777766799999999998887763 5899999
Q ss_pred EEEEEc-CCCCCccccC-----CcchhHHHHHHHHHH
Q psy17502 91 TVKIFS-DKRNPTPYQG-----ARTADAIIDVALEAI 121 (461)
Q Consensus 91 ~l~~~~-~g~~~~~y~g-----~~~~~~i~~~i~~~~ 121 (461)
+++++. +|+.+....+ ..+...+..++.+..
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 999997 5554433222 244556777776543
No 131
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.24 E-value=1.4e-11 Score=97.79 Aligned_cols=86 Identities=26% Similarity=0.473 Sum_probs=66.1
Q ss_pred cCCCeEEEEEECCCCHhHHhhHHHHHH---HHHHcCCceEEEEEecCCc--------------------hhhHhhcCCCC
Q psy17502 32 KSDEVWIVEYYAPWCGHCQSFKDEYMK---LATALKGVVKVGAVNADEE--------------------KSLSSSHGVTG 88 (461)
Q Consensus 32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~---~a~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i~~ 88 (461)
.++++.+++|++|||++|+.+.+++.+ +...++.++.++.++++.. .++++++||++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 367899999999999999999999885 4455555688888888754 35889999999
Q ss_pred ccEEEEEc-CCCCCccccCCcchhHHHHHH
Q psy17502 89 FPTVKIFS-DKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i 117 (461)
+||++++. +|+.+..+.|..+.++|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999997 777777899999999998865
No 132
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.24 E-value=5.7e-11 Score=90.45 Aligned_cols=91 Identities=34% Similarity=0.682 Sum_probs=78.8
Q ss_pred hhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASD 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~ 226 (461)
++.+.+ ..+.+++|.|+++||+.|..+.+.+.++++. .+.+.|+.+|++....++.++++.++|++++|+.| ..
T Consensus 2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g----~~ 75 (93)
T cd02947 2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG----KE 75 (93)
T ss_pred chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECC----EE
Confidence 345444 4448899999999999999999999999988 67899999999999999999999999999999987 45
Q ss_pred cccccCCCCHHHHHHHH
Q psy17502 227 AQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 227 ~~~y~g~~~~~~i~~fi 243 (461)
...+.|..+.+.|.+||
T Consensus 76 ~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 76 VDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEecCCCHHHHHHHh
Confidence 66778888889988886
No 133
>PHA02125 thioredoxin-like protein
Probab=99.23 E-value=3.2e-11 Score=87.64 Aligned_cols=69 Identities=22% Similarity=0.472 Sum_probs=55.6
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCC-cchhHHHH
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA-RTADAIID 115 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~-~~~~~i~~ 115 (461)
+++||++||++|+.+.|.+++++ +.++.||++++++++++|+|.++||++ +|+...++.|. .+..+|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHH
Confidence 78999999999999999997653 468899999999999999999999987 45555677774 33344443
No 134
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.23 E-value=7.6e-11 Score=91.95 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=75.6
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcc--cccEEEEEcCCCCCCcCccccc-C
Q psy17502 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIR--GYPTIKFFSPGSRSASDAQEYN-G 232 (461)
Q Consensus 156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~--~~P~i~~~~~~~~~~~~~~~y~-g 232 (461)
+.++++.|+++||++|..+.+.+.++|+.+++.+.|+.+|+++...+++.+|+. ++|++++++.... ....+. |
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~---~k~~~~~~ 88 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG---KKYLMPEE 88 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc---cccCCCcc
Confidence 578999999999999999999999999999999999999999999999999999 9999999998311 223344 4
Q ss_pred CCCHHHHHHHHHh
Q psy17502 233 GRTSQDIVTWALN 245 (461)
Q Consensus 233 ~~~~~~i~~fi~~ 245 (461)
..+.++|.+|+..
T Consensus 89 ~~~~~~l~~fi~~ 101 (103)
T cd02982 89 ELTAESLEEFVED 101 (103)
T ss_pred ccCHHHHHHHHHh
Confidence 4699999999975
No 135
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.22 E-value=3.8e-11 Score=87.29 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=59.4
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCC-cchhHHHHHH
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA-RTADAIIDVA 117 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~-~~~~~i~~~i 117 (461)
|.||++||++|+.+.|.++++++++..++.+..|| +.+.+.++++.++|++++ +|+.. +.|. .+.+.+.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 78999999999999999999999998788888887 355588999999999999 66544 7775 3446666654
No 136
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.19 E-value=1.5e-10 Score=92.33 Aligned_cols=98 Identities=14% Similarity=0.181 Sum_probs=76.0
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-----------hhhhhcC
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-----------RIAGEFN 207 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-----------~l~~~~~ 207 (461)
.+..++.+++.+.+ ++++.++|+|+++||++|+.+.|.+.++++.. ...+..+|.+.+. ++.++++
T Consensus 7 ~~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 7 GLEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 35678888998875 66788999999999999999999999999983 4667777765332 4456665
Q ss_pred ----cccccEEEEEcCCCCCCcCcccccC-CCCHHHHHHHH
Q psy17502 208 ----IRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWA 243 (461)
Q Consensus 208 ----i~~~P~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~fi 243 (461)
+.+.||+++|++| .......| ..+.++|.+|+
T Consensus 84 i~~~i~~~PT~v~~k~G----k~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDG----KQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred CcccCCCCCEEEEEeCC----eEEEEEeCCCCCHHHHHHHh
Confidence 4459999999999 45556677 45788888876
No 137
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.15 E-value=2.6e-10 Score=90.39 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=90.7
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECC--CCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAP--WCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTVK 93 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~--~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 93 (461)
....++..+.+. ++...+..+++|-.+ -++.+....-.+.++++++.+ ++.+++||++++++++.+|||.++||++
T Consensus 18 g~~~~~~~~~~~-~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 18 GWTPVSESRLDD-WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCCccccccHHH-HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 445677788998 777777766666543 467788888889999999974 5999999999999999999999999999
Q ss_pred EEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502 94 IFSDKRNPTPYQGARTADAIIDVALEAIR 122 (461)
Q Consensus 94 ~~~~g~~~~~y~g~~~~~~i~~~i~~~~~ 122 (461)
+|++|+.+..+.|.++.+.+.+||.+.+.
T Consensus 97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 97 VFTGGNYRGVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred EEECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence 99999999999999999999999998874
No 138
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.15 E-value=3.2e-10 Score=97.83 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=80.0
Q ss_pred CCceeEcChhhhhhhhhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502 137 SKAVVELTDSNFEKLVYNSD--DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI 214 (461)
Q Consensus 137 ~~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i 214 (461)
-..+..++..+|...+..+. .+++|.||++||++|+.+.+.+.++|..+. .++|+.++++. .+..|++.+.||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~---~~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ---CIPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH---hHhhCCCCCCCEE
Confidence 35688899999987765543 489999999999999999999999999984 69999998764 2578999999999
Q ss_pred EEEcCCCCCCcCccccc------C-CCCHHHHHHHHHh
Q psy17502 215 KFFSPGSRSASDAQEYN------G-GRTSQDIVTWALN 245 (461)
Q Consensus 215 ~~~~~~~~~~~~~~~y~------g-~~~~~~i~~fi~~ 245 (461)
++|++|. ....+. | .++.++|..++.+
T Consensus 157 liyk~G~----~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 157 LVYRNGD----IVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEECCE----EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999983 222332 3 4677777766653
No 139
>KOG0908|consensus
Probab=99.12 E-value=3.2e-10 Score=97.04 Aligned_cols=102 Identities=23% Similarity=0.447 Sum_probs=84.1
Q ss_pred eeEc-Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 140 VVEL-TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 140 v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
|+.+ ++++|...+.. ..+.++|.|++.||++|+...|.|..+|.+| ....|.+||+++.+..+..+||...||.++|
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 4444 56778776643 3478999999999999999999999999999 5688999999999999999999999999999
Q ss_pred cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
+++ .....+.|. +...|.+-+.++.
T Consensus 82 ~ng----~kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 82 RNG----VKIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred ecC----eEeeeecCC-CHHHHHHHHHHHh
Confidence 998 456667775 5666666666665
No 140
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.12 E-value=5.9e-10 Score=87.08 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=78.7
Q ss_pred eecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhcc-CcceEEEecccccchhHHHhhCCCCCC--C
Q psy17502 258 QIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYK-QKVWGWIWSEAVAQPDLENVLEIGGFG--Y 334 (461)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~-~~~f~~v~~d~~~~~~~~~~lgl~~~~--~ 334 (461)
+++.++....+ ..+++++++ ...+..+.++.+.++..++++|++|| +++ .|+++|...+...++.|||+..+ .
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~vAk~fk~gki-~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYY-NVDYSKNPKGTNYWRNRVLKVAKDFPDRKL-NFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhc--cCCeEEEEE-eccccCChhHHHHHHHHHHHHHHHCcCCeE-EEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 45555555443 445544433 22233356778999999999999999 686 78888876666789999999766 9
Q ss_pred ccEEEEccCccccccCCCCC-CHHHHHHHHHHHh
Q psy17502 335 PAMAVLNAKKMKYSLLKGPF-SYDGINEFLRDLS 367 (461)
Q Consensus 335 P~l~i~~~~~~k~~~~~~~~-~~~~i~~Fi~~~~ 367 (461)
|+++|++..+.||.+ .+++ +.++|.+|+++++
T Consensus 79 P~~~i~~~~~~KY~~-~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 79 PVVAIRTAKGKKYVM-EEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CEEEEEeCCCCccCC-CcccCCHHHHHHHHHHhC
Confidence 999999876678874 6678 9999999999874
No 141
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.12 E-value=5.9e-10 Score=90.18 Aligned_cols=96 Identities=14% Similarity=0.288 Sum_probs=76.1
Q ss_pred hhhhhhhcCC-CeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCccc-------------HhhhhhcCcc
Q psy17502 147 NFEKLVYNSD-DIWLVEFFAPWCGHCKNLEPHWE---KAASELEGKVKLGAVDATVH-------------QRIAGEFNIR 209 (461)
Q Consensus 147 ~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~i~f~~v~~~~~-------------~~l~~~~~i~ 209 (461)
++++. .+++ ++++|.|+++||++|+.+.+.+. .+.+.+++.+.+..+|.+.+ .+++.+|++.
T Consensus 5 ~~~~a-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 5 DLAEA-AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHH-HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 34444 3566 89999999999999999998875 56666666788888887653 6889999999
Q ss_pred cccEEEEEcCC-CCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 210 GYPTIKFFSPG-SRSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 210 ~~P~i~~~~~~-~~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
++|+++++.++ + ....++.|..+.+.+.+++...
T Consensus 84 ~~Pt~~~~~~~gg---~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 84 FTPTVIFLDPEGG---KEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred cccEEEEEcCCCC---ceeEEecCCCCHHHHHHHHHHH
Confidence 99999999975 3 2556788988888888887654
No 142
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.11 E-value=3.5e-10 Score=114.48 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=79.3
Q ss_pred CccchhHHH---hcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCc----hhhHhhcCCCCccE
Q psy17502 22 TTSNFDDKV---IKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEE----KSLSSSHGVTGFPT 91 (461)
Q Consensus 22 ~~~~f~~~~---~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~P~ 91 (461)
+.+++++.+ ..++++++|.|||+||++|+.+.+.. .++.+.++ ++.+.++|.+++ .+++++|++.++|+
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 345666522 13468999999999999999998875 67777776 488999999753 67999999999999
Q ss_pred EEEEc-CCCC--CccccCCcchhHHHHHHHHH
Q psy17502 92 VKIFS-DKRN--PTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 92 l~~~~-~g~~--~~~y~g~~~~~~i~~~i~~~ 120 (461)
+++|+ +|+. ..++.|..+.+++.+++++.
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99997 6665 36789999999999998864
No 143
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.11 E-value=7.1e-10 Score=82.42 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=69.7
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHH
Q psy17502 159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQD 238 (461)
Q Consensus 159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~ 238 (461)
.+..|+++||++|+.+.+.+.++++.++..+.+..+|.++++++++++++.++|++++ +| . ..+.|..+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-----~-~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-----D-VEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-----E-EEEecCCCHHH
Confidence 4678999999999999999999999998789999999999999999999999999986 44 2 36789889999
Q ss_pred HHHHHHh
Q psy17502 239 IVTWALN 245 (461)
Q Consensus 239 i~~fi~~ 245 (461)
+.+++.+
T Consensus 74 l~~~l~~ 80 (82)
T TIGR00411 74 LVEAIKK 80 (82)
T ss_pred HHHHHHh
Confidence 9988865
No 144
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.08 E-value=4.4e-10 Score=110.31 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=76.1
Q ss_pred HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEE----------------------------ecCCchhh
Q psy17502 30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAV----------------------------NADEEKSL 80 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~v----------------------------d~~~~~~l 80 (461)
.+.++++++|.|||+||++|+..+|++++++++++. .+.++.| +++.+..+
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 355778999999999999999999999999998863 3555444 34456678
Q ss_pred HhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502 81 SSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 81 ~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
++.|+|+++|+++++. +|+....+.|..+.++|..+|+...
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 9999999999997764 7877788999999999999998543
No 145
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.07 E-value=1.1e-09 Score=94.20 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=81.5
Q ss_pred ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC--------------------
Q psy17502 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------------------- 76 (461)
Q Consensus 18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------------------- 76 (461)
+..++.+.+.- -.-.+++++|+||++||++|+...+.+.++++++.+. +.++.|+++.
T Consensus 46 ~~~~~g~~~~l-~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~ 124 (173)
T PRK03147 46 LTDLEGKKIEL-KDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAI 124 (173)
T ss_pred eecCCCCEEeH-HHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 44455555543 2225678999999999999999999999999999764 8888888753
Q ss_pred --chhhHhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHH
Q psy17502 77 --EKSLSSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 77 --~~~l~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
+..++++|++.++|+++++. +|+....+.|..+.+++.+++.+.
T Consensus 125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 35688999999999999987 666666889999999999988753
No 146
>KOG0913|consensus
Probab=99.07 E-value=5.1e-11 Score=101.12 Aligned_cols=106 Identities=25% Similarity=0.451 Sum_probs=93.9
Q ss_pred CCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCcc
Q psy17502 12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFP 90 (461)
Q Consensus 12 ~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P 90 (461)
...++.+..++++|... ++ ..-||++|+||||+.|+...|+|...|.--.+ .|.++.||.+.++-|.-+|-+...|
T Consensus 20 ~~r~s~~~~~~eenw~~-~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 20 PRRSSKLTRIDEENWKE-LL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALP 96 (248)
T ss_pred ccccceeEEecccchhh-hh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecc
Confidence 33467899999999998 54 34599999999999999999999999875444 5999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502 91 TVKIFSDKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
+|+..++| ...+|.|.++..++++|+..+-
T Consensus 97 tIYHvkDG-eFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 97 TIYHVKDG-EFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred eEEEeecc-ccccccCcccchhHHHHHHhhh
Confidence 99999997 6679999999999999998764
No 147
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.05 E-value=7e-10 Score=101.28 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC-----------chhhHhhcCCCCccEEEEEcC-CCC
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE-----------EKSLSSSHGVTGFPTVKIFSD-KRN 100 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~P~l~~~~~-g~~ 100 (461)
.++++||.||++||++|+.+.|.+.+++++++ +.+..|+.+. +..+++++||.++|++++++. |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 36799999999999999999999999999985 4455555543 356899999999999999985 555
Q ss_pred Cc-cccCCcchhHHHHHHHHHHh
Q psy17502 101 PT-PYQGARTADAIIDVALEAIR 122 (461)
Q Consensus 101 ~~-~y~g~~~~~~i~~~i~~~~~ 122 (461)
+. ...|..+.++|.+.+.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 54 35689999999999887653
No 148
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.05 E-value=6.3e-10 Score=79.06 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=51.7
Q ss_pred EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502 37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 94 (461)
-++.|+++||++|+.+.+.+++++... +++.+..+|.++++++++++|+.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 478899999999999999999998754 459999999999999999999999999876
No 149
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.05 E-value=1.3e-09 Score=90.30 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=65.5
Q ss_pred hcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc------------hhhH-hhc---CCCCccEEEE
Q psy17502 31 IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE------------KSLS-SSH---GVTGFPTVKI 94 (461)
Q Consensus 31 ~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~P~l~~ 94 (461)
+..+++.+|.|||+||++|++.+|.+++++++++ +.+..|+.++. .... ..+ ++.++|+.++
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 3456678999999999999999999999999884 44555555432 2333 345 7899999999
Q ss_pred Ec-CCCC-CccccCCcchhHHHHHHHH
Q psy17502 95 FS-DKRN-PTPYQGARTADAIIDVALE 119 (461)
Q Consensus 95 ~~-~g~~-~~~y~g~~~~~~i~~~i~~ 119 (461)
+. +|+. ...+.|..+.+++.+.+.+
T Consensus 125 ID~~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred EeCCCCEEEEEeecccCHHHHHHHHHH
Confidence 97 4544 3467899999988877765
No 150
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.03 E-value=1.1e-09 Score=89.57 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=54.7
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--------ceEEEEEecCCch-------------------------h
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--------VVKVGAVNADEEK-------------------------S 79 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--------~v~~~~vd~~~~~-------------------------~ 79 (461)
++++++|+|||+||++|++++|.+.++++++++ ++.++.|+.+.+. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 568999999999999999999999998876643 4788888776432 3
Q ss_pred hHhhcCCCCccEEEEEc-CC
Q psy17502 80 LSSSHGVTGFPTVKIFS-DK 98 (461)
Q Consensus 80 l~~~~~i~~~P~l~~~~-~g 98 (461)
++++|++.++|+++++. +|
T Consensus 104 l~~~y~v~~iPt~vlId~~G 123 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDG 123 (146)
T ss_pred HHHHcCCCCCCEEEEECCCC
Confidence 77789999999999998 44
No 151
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.03 E-value=1.6e-09 Score=82.98 Aligned_cols=64 Identities=23% Similarity=0.471 Sum_probs=54.0
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCCch-------------------------hhHhhcCC
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADEEK-------------------------SLSSSHGV 86 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~~~-------------------------~l~~~~~i 86 (461)
+++++|+||++||++|+...|.+.++.++++ +++.++.|++++.. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999998 57999999988653 27788899
Q ss_pred CCccEEEEEcC
Q psy17502 87 TGFPTVKIFSD 97 (461)
Q Consensus 87 ~~~P~l~~~~~ 97 (461)
.++|+++++..
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 99999999874
No 152
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.02 E-value=2.6e-09 Score=83.99 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=66.0
Q ss_pred ChhhhhhhhhcC-CCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc-------cHhhhhhcCc
Q psy17502 144 TDSNFEKLVYNS-DDIWLVEFFA-------PWCGHCKNLEPHWEKAASELEGKVKLGAVDATV-------HQRIAGEFNI 208 (461)
Q Consensus 144 ~~~~~~~~~~~~-~~~~~v~f~~-------~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~-------~~~l~~~~~i 208 (461)
+.++|.+.+... +++++|.|+| +||++|+.+.|.+++++..+.+.+.|+.||++. +.+++.+++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 456677766433 5799999999 999999999999999999998789999999865 4588999999
Q ss_pred c-cccEEEEEcCC
Q psy17502 209 R-GYPTIKFFSPG 220 (461)
Q Consensus 209 ~-~~P~i~~~~~~ 220 (461)
. +.||+++|+.+
T Consensus 88 ~~~iPT~~~~~~~ 100 (119)
T cd02952 88 TTGVPTLLRWKTP 100 (119)
T ss_pred ccCCCEEEEEcCC
Confidence 8 99999999765
No 153
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.02 E-value=1.5e-09 Score=88.14 Aligned_cols=79 Identities=22% Similarity=0.382 Sum_probs=63.2
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe-----------------------cCCchhhHhhcCCCCc
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN-----------------------ADEEKSLSSSHGVTGF 89 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i~~~ 89 (461)
.+++++|+||++||++|+...|.++++++++. +.++.|+ ++.+..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 46799999999999999999999999988763 5555554 3455678889999999
Q ss_pred cEEEEEc-CCCCCccccCCcchhHH
Q psy17502 90 PTVKIFS-DKRNPTPYQGARTADAI 113 (461)
Q Consensus 90 P~l~~~~-~g~~~~~y~g~~~~~~i 113 (461)
|+.+++. +|+....+.|..+.+.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 9766665 78777788898877654
No 154
>PTZ00062 glutaredoxin; Provisional
Probab=99.01 E-value=1.1e-08 Score=88.53 Aligned_cols=115 Identities=8% Similarity=0.125 Sum_probs=85.2
Q ss_pred cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCC
Q psy17502 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSR 222 (461)
Q Consensus 143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~ 222 (461)
.+.+++.+.+..+...++++|+++||++|+.+.+.+.++++.+ +.+.|+.||.+ |+|.++|++++|++|
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d--------~~V~~vPtfv~~~~g-- 72 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA--------DANNEYGVFEFYQNS-- 72 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc--------cCcccceEEEEEECC--
Confidence 3567777776433477889999999999999999999999998 57999999754 999999999999998
Q ss_pred CCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEE
Q psy17502 223 SASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIV 277 (461)
Q Consensus 223 ~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i 277 (461)
....++.|. +...+..++.++... .+ ... ....+...++.+++.++
T Consensus 73 --~~i~r~~G~-~~~~~~~~~~~~~~~---~~-~~~--~~~~v~~li~~~~Vvvf 118 (204)
T PTZ00062 73 --QLINSLEGC-NTSTLVSFIRGWAQK---GS-SED--TVEKIERLIRNHKILLF 118 (204)
T ss_pred --EEEeeeeCC-CHHHHHHHHHHHcCC---CC-HHH--HHHHHHHHHhcCCEEEE
Confidence 466677775 488899998776521 11 111 12334555566666554
No 155
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.00 E-value=2.9e-09 Score=92.24 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=72.6
Q ss_pred cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-----------------------hhHhhcCCCC
Q psy17502 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-----------------------SLSSSHGVTG 88 (461)
Q Consensus 32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i~~ 88 (461)
..+++++|.||++||++|++.+|.+.+++++ .+.++.|+.++++ .+++.|++.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3678999999999999999999999988753 3667777765432 2455789999
Q ss_pred ccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502 89 FPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK 124 (461)
Q Consensus 89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~ 124 (461)
+|+.+++. +|+....+.|..+.+.+.+++...+...
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99877776 8877788899999999999998887554
No 156
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.97 E-value=2.2e-09 Score=87.71 Aligned_cols=66 Identities=23% Similarity=0.459 Sum_probs=54.6
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCch-------------------------hhHhhc
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEK-------------------------SLSSSH 84 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~-------------------------~l~~~~ 84 (461)
.+++++|.||++||++|+..+|++.++++++++ ++.+..|+.+..+ .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 468999999999999999999999999998865 4667777665432 456779
Q ss_pred CCCCccEEEEEc-CC
Q psy17502 85 GVTGFPTVKIFS-DK 98 (461)
Q Consensus 85 ~i~~~P~l~~~~-~g 98 (461)
+|.++|+++++. +|
T Consensus 96 ~v~~iPt~~lid~~G 110 (132)
T cd02964 96 KVEGIPTLVVLKPDG 110 (132)
T ss_pred CCCCCCEEEEECCCC
Confidence 999999999997 44
No 157
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.97 E-value=3.1e-09 Score=85.74 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=69.5
Q ss_pred EcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe---------------------cCCch
Q psy17502 20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN---------------------ADEEK 78 (461)
Q Consensus 20 ~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd---------------------~~~~~ 78 (461)
.++.+.+.. ....+++++|.||++||++|+.+.|.+.++++++. +..+.+| ++.+.
T Consensus 7 ~~~g~~~~~-~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (123)
T cd03011 7 TLDGEQFDL-ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG 83 (123)
T ss_pred cCCCCEeeH-HHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc
Confidence 344455555 33345899999999999999999999999988742 2222222 13446
Q ss_pred hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHH
Q psy17502 79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115 (461)
Q Consensus 79 ~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~ 115 (461)
+++++|+|.++|+++++.+++....+.|..+.++|.+
T Consensus 84 ~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 84 VISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 7999999999999999986656667889999888865
No 158
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.97 E-value=3.4e-09 Score=90.83 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=70.1
Q ss_pred hcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec-----------------------CCchhhHhhcCCC
Q psy17502 31 IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA-----------------------DEEKSLSSSHGVT 87 (461)
Q Consensus 31 ~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i~ 87 (461)
...+++++|+||++||++|++..|.++++++. .+.++.|+. +.+..+.+.|++.
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 34678999999999999999999999988763 245555553 3334577789999
Q ss_pred CccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502 88 GFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 88 ~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
++|+.+++. +|+....+.|..+.+++.+++.+.+
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 999777765 7877778899999999999998875
No 159
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.97 E-value=4.3e-09 Score=83.48 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=78.0
Q ss_pred HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecC--CchhhHhhcCCCCccEEEEEc--CCCCCc
Q psy17502 30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNAD--EEKSLSSSHGVTGFPTVKIFS--DKRNPT 102 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~--~g~~~~ 102 (461)
..+++++++|+|+++||..|+.+.... .++.+.++..+.+..+|.+ +..+++..|++.++|+++++. +|+.+.
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence 456788999999999999999997653 6677777767888888886 457899999999999999997 477788
Q ss_pred cccCCcchhHHHHHHHHHH
Q psy17502 103 PYQGARTADAIIDVALEAI 121 (461)
Q Consensus 103 ~y~g~~~~~~i~~~i~~~~ 121 (461)
+..|..+++++.+.+.+..
T Consensus 93 ~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 93 VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEcCCCCHHHHHHHHHHHH
Confidence 8999999999999888765
No 160
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.95 E-value=3.5e-09 Score=86.49 Aligned_cols=67 Identities=21% Similarity=0.465 Sum_probs=54.7
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCc------------------------hhhHhhcC
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEE------------------------KSLSSSHG 85 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 85 (461)
.+++++|+||++||++|+...|.+.++++++.+ .+.++.|+.+.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 467999999999999999999999999988853 366666665533 35788999
Q ss_pred CCCccEEEEEc-CCC
Q psy17502 86 VTGFPTVKIFS-DKR 99 (461)
Q Consensus 86 i~~~P~l~~~~-~g~ 99 (461)
|.++|+++++. +|+
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 99999999998 553
No 161
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.94 E-value=3.8e-09 Score=83.87 Aligned_cols=74 Identities=32% Similarity=0.553 Sum_probs=64.0
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC-CceEEEEEecCCc-----------------------hhhHhhcCCCC
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-GVVKVGAVNADEE-----------------------KSLSSSHGVTG 88 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~-~~v~~~~vd~~~~-----------------------~~l~~~~~i~~ 88 (461)
.+++++|+||++||++|+...+.+.++.+++. ..+.++.|+++.. ..+++.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 36799999999999999999999999999986 3599999999875 77899999999
Q ss_pred ccEEEEEc-CCCCCccccC
Q psy17502 89 FPTVKIFS-DKRNPTPYQG 106 (461)
Q Consensus 89 ~P~l~~~~-~g~~~~~y~g 106 (461)
+|+++++. +|+....|.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 99999997 6655555554
No 162
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.93 E-value=4.2e-09 Score=78.82 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhH
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADA 112 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~ 112 (461)
.++.-+..|+++||++|+...+.+.+++.... ++.+..+|.++.++++++|+|.++|++++ +|+. .+.|..+.++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~--~~~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL--FGFGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE--EEeCCCCHHH
Confidence 45578999999999999999999999998764 59999999999999999999999999975 6643 3467655555
Q ss_pred HH
Q psy17502 113 II 114 (461)
Q Consensus 113 i~ 114 (461)
++
T Consensus 86 ~~ 87 (89)
T cd03026 86 IL 87 (89)
T ss_pred Hh
Confidence 43
No 163
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.89 E-value=4.4e-09 Score=83.40 Aligned_cols=85 Identities=21% Similarity=0.407 Sum_probs=58.8
Q ss_pred hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-hhhhhcCccc--ccEEEEEcCCCCCCcCccc
Q psy17502 153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-RIAGEFNIRG--YPTIKFFSPGSRSASDAQE 229 (461)
Q Consensus 153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-~l~~~~~i~~--~P~i~~~~~~~~~~~~~~~ 229 (461)
...+++++|.|+++||++|+.+.+.+.+.+........|..++.+.+. .....|++.+ +|+++++.+.++.......
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 467889999999999999999999999977654334456666655543 4457888876 9999999754432222233
Q ss_pred ccCCCCHH
Q psy17502 230 YNGGRTSQ 237 (461)
Q Consensus 230 y~g~~~~~ 237 (461)
..|..+.+
T Consensus 96 ~~~~~~~~ 103 (117)
T cd02959 96 KKGNPNYK 103 (117)
T ss_pred CCCCcccc
Confidence 44444433
No 164
>KOG0914|consensus
Probab=98.84 E-value=4.4e-09 Score=88.07 Aligned_cols=91 Identities=15% Similarity=0.401 Sum_probs=75.8
Q ss_pred CCCCceEc-CccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCC-
Q psy17502 14 SYSDVIKL-TTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTG- 88 (461)
Q Consensus 14 ~~~~v~~l-~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~- 88 (461)
....+..+ +++.+++ .+..+ ..|+|.|++.|.+.|+.+.|.|.++..++.. .+.||+||....++.+++|+|..
T Consensus 122 gpe~ikyf~~~q~~de-el~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDE-ELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CchheeeecchhhHHH-HhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccC
Confidence 34567778 4555555 55544 4899999999999999999999999999976 49999999999999999999864
Q ss_pred -----ccEEEEEcCCCCCcccc
Q psy17502 89 -----FPTVKIFSDKRNPTPYQ 105 (461)
Q Consensus 89 -----~P~l~~~~~g~~~~~y~ 105 (461)
.||+++|.+|+.+.+..
T Consensus 201 ~~srQLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEVSRRP 222 (265)
T ss_pred cccccCCeEEEEccchhhhcCc
Confidence 89999999997776543
No 165
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.84 E-value=1.6e-08 Score=80.26 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=52.9
Q ss_pred HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCc-hhhHhhcCCCCccEEEEEc-CCCCCccc
Q psy17502 30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEE-KSLSSSHGVTGFPTVKIFS-DKRNPTPY 104 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~P~l~~~~-~g~~~~~y 104 (461)
..++++++||.|++.||++|+.+...+ .++++.+...+.++.++.+.. ..+. ..+ .++|+++|+. +|+.+.+.
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCcccc
Confidence 456889999999999999999998865 455555554566667776422 2221 234 7899999997 66555554
Q ss_pred cCC
Q psy17502 105 QGA 107 (461)
Q Consensus 105 ~g~ 107 (461)
.|.
T Consensus 97 ~Gy 99 (130)
T cd02960 97 TGR 99 (130)
T ss_pred ccc
Confidence 443
No 166
>smart00594 UAS UAS domain.
Probab=98.79 E-value=3e-08 Score=79.52 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=71.0
Q ss_pred HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecC--CchhhHhhcCCCCccEEEEEc-CC-C---
Q psy17502 30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNAD--EEKSLSSSHGVTGFPTVKIFS-DK-R--- 99 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~-~g-~--- 99 (461)
..+++++++|+|+++||+.|+.+.... .++.+.++..+.+..+|.+ +..+++++|++.++|++.++. +| +
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~ 102 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI 102 (122)
T ss_pred HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence 355778999999999999999987764 5666666667888788865 456799999999999999996 33 1
Q ss_pred -CCccccCCcchhHHHHHH
Q psy17502 100 -NPTPYQGARTADAIIDVA 117 (461)
Q Consensus 100 -~~~~y~g~~~~~~i~~~i 117 (461)
.+.+..|..+.+++..++
T Consensus 103 ~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 103 EWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEeccccCCCCHHHHHHhh
Confidence 356789999999998875
No 167
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.5e-08 Score=78.32 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=76.6
Q ss_pred HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCc----------------hhhHhhcCCCCcc
Q psy17502 30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEE----------------KSLSSSHGVTGFP 90 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~----------------~~l~~~~~i~~~P 90 (461)
+..+++..+++|-++.|..|.++..++ .++.+.+.+.+.+..+|+... ++|+++|+|+++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 566788999999999999999998876 555566666677887777532 3799999999999
Q ss_pred EEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502 91 TVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK 124 (461)
Q Consensus 91 ~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~ 124 (461)
++++|+ .|+.+....|....+++..-+.-.....
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 999998 6778888899999999887666554433
No 168
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.75 E-value=1.1e-07 Score=73.09 Aligned_cols=93 Identities=25% Similarity=0.443 Sum_probs=74.0
Q ss_pred EcCh-hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502 142 ELTD-SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220 (461)
Q Consensus 142 ~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~ 220 (461)
.+++ ++++.+ ...+++++|+|+.+++ ......|.++|..+++.+.|+.+. +.++++++++.. |++++|++.
T Consensus 3 ~i~s~~~l~~~-~~~~~~~vvg~f~~~~---~~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~ 74 (97)
T cd02981 3 ELTSKEELEKF-LDKDDVVVVGFFKDEE---SEEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF 74 (97)
T ss_pred ecCCHHHHHHH-hccCCeEEEEEECCCC---cHHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence 3433 345444 5778999999999884 467899999999999889999873 567788888875 999999886
Q ss_pred CCCCcCcccccCCCCHHHHHHHHHh
Q psy17502 221 SRSASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 221 ~~~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
. +....|+|..+.++|.+||..
T Consensus 75 ~---~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 75 E---EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred c---cCCccCCCCCCHHHHHHHHHh
Confidence 3 356779999999999999964
No 169
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.75 E-value=3.4e-08 Score=107.01 Aligned_cols=92 Identities=20% Similarity=0.305 Sum_probs=77.2
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEec---------------------------CCchhhHhhc
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNA---------------------------DEEKSLSSSH 84 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~ 84 (461)
.+++++|.|||+||++|+...|.+++++++++++ +.++.|.+ +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4789999999999999999999999999999765 66766642 1233577889
Q ss_pred CCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502 85 GVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK 124 (461)
Q Consensus 85 ~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~ 124 (461)
+|.++|+++++. +|+...++.|....+.+.+++...+...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY 539 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence 999999999995 8887788999999999999999887543
No 170
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.75 E-value=5.8e-08 Score=81.85 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=66.1
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-------------hhhHhhcCC--CCccEEEEEc-CCCCC
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-------------KSLSSSHGV--TGFPTVKIFS-DKRNP 101 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~P~l~~~~-~g~~~ 101 (461)
+|.||++||++|++..|.+.+++++++ +.+..|+.++. ..+.+.|++ .++|+.+++. +|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 888999999999999999999999984 55655665533 226678885 6999999997 66543
Q ss_pred -ccccCCcchhHHHHHHHHHHh
Q psy17502 102 -TPYQGARTADAIIDVALEAIR 122 (461)
Q Consensus 102 -~~y~g~~~~~~i~~~i~~~~~ 122 (461)
..+.|..+.+++.+.+...+.
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 468999999999888887763
No 171
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.75 E-value=1.8e-08 Score=74.66 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=52.4
Q ss_pred HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
..++++++||+|+++||+.|+.+...+ .++.+.+.+++.++.||.++.....+..+ .++|+++++.
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 467899999999999999999998887 55555566679999999987665443222 7799999974
No 172
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.74 E-value=4.5e-08 Score=71.08 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=57.5
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC-CCHHHH
Q psy17502 161 VEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQDI 239 (461)
Q Consensus 161 v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~i 239 (461)
|.||++||++|+.+.+.++++++.+...+.|..+| +.+.+.+|++.+.|++++ +| ... +.|. .+.+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G-----~~~-~~G~~~~~~~l 71 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DG-----ELV-IMGKIPSKEEI 71 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CC-----EEE-EEeccCCHHHH
Confidence 77999999999999999999999998788998886 234477899999999999 54 222 6775 355777
Q ss_pred HHHH
Q psy17502 240 VTWA 243 (461)
Q Consensus 240 ~~fi 243 (461)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7665
No 173
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.73 E-value=2.1e-08 Score=79.72 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=46.2
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe---cCCchhhHhhcCCCCccEE
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN---ADEEKSLSSSHGVTGFPTV 92 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd---~~~~~~l~~~~~i~~~P~l 92 (461)
++++++|.||++||++|+...|.++++++.+.+++.++.+. .++..++++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 46799999999999999999999999998887666666552 2233456677777777765
No 174
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.71 E-value=6.8e-08 Score=78.18 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=58.8
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecC-----Cc----------------------hhhHhhc
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNAD-----EE----------------------KSLSSSH 84 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~-----~~----------------------~~l~~~~ 84 (461)
++++++|+||+.||++|++..|.+.++++++++ .+.++.|+.. .. ..+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 467999999999999999999999999999975 4777777652 11 1366778
Q ss_pred CCCCccEEEEEc-CCCCCccccCC
Q psy17502 85 GVTGFPTVKIFS-DKRNPTPYQGA 107 (461)
Q Consensus 85 ~i~~~P~l~~~~-~g~~~~~y~g~ 107 (461)
++.++|+.+++. +|+....+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999996 66555555553
No 175
>PHA02125 thioredoxin-like protein
Probab=98.70 E-value=7.3e-08 Score=69.88 Aligned_cols=68 Identities=24% Similarity=0.468 Sum_probs=52.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC-CCHHH
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQD 238 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~ 238 (461)
++.|+++||++|+.+.+.+.+++ +.++.+|++...+++++|+|.++||++ .+ +....+.|. .+..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g----~~~~~~~G~~~~~~~ 68 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NT----STLDRFTGVPRNVAE 68 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CC----EEEEEEeCCCCcHHH
Confidence 68999999999999999987653 467889988899999999999999987 33 233456663 34444
Q ss_pred HH
Q psy17502 239 IV 240 (461)
Q Consensus 239 i~ 240 (461)
|.
T Consensus 69 l~ 70 (75)
T PHA02125 69 LK 70 (75)
T ss_pred HH
Confidence 43
No 176
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.67 E-value=6e-08 Score=76.74 Aligned_cols=87 Identities=22% Similarity=0.387 Sum_probs=61.2
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHH---HHHHhcCceEEEEEeCccc--------------------HhhhhhcCccc
Q psy17502 154 NSDDIWLVEFFAPWCGHCKNLEPHWEK---AASELEGKVKLGAVDATVH--------------------QRIAGEFNIRG 210 (461)
Q Consensus 154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~---~a~~~~~~i~f~~v~~~~~--------------------~~l~~~~~i~~ 210 (461)
.++++.++.|+++||++|+.+.+...+ +...+++.+.+..+++... .++++++||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 467899999999999999999888775 4445555677777776532 35888999999
Q ss_pred ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
+|+++++...+ .....+.|..+.++|..++
T Consensus 83 tPt~~~~d~~G---~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDG---KIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTS---CEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCC---CEEEEecCCCCHHHHHhhC
Confidence 99999997432 2455678999999987764
No 177
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.64 E-value=1.2e-07 Score=67.13 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=51.2
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502 159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF 216 (461)
Q Consensus 159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~ 216 (461)
-++.|+++||++|..+.+.+++++... +.+.|..+|.++++++++++++.+.|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 467899999999999999999998754 579999999999999999999999999876
No 178
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.64 E-value=2e-07 Score=74.29 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=59.7
Q ss_pred hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhH-HHHH--HHHHhcCceEEEEEeCcccHhhhh--------hcCcccccE
Q psy17502 145 DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP-HWEK--AASELEGKVKLGAVDATVHQRIAG--------EFNIRGYPT 213 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~~~--~a~~~~~~i~f~~v~~~~~~~l~~--------~~~i~~~P~ 213 (461)
++.+.+. .+++++++|.|+++||+.|+.+.+ .|.. ++..+...+.++.+|.++.+++++ .+++.++|+
T Consensus 5 ~eal~~A-k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 5 EEAFEKA-RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHH-HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 4445543 577899999999999999999875 4543 666666789999999887776654 358999999
Q ss_pred EEEEcCCCC
Q psy17502 214 IKFFSPGSR 222 (461)
Q Consensus 214 i~~~~~~~~ 222 (461)
++++.+.++
T Consensus 84 ~vfl~~~G~ 92 (124)
T cd02955 84 NVFLTPDLK 92 (124)
T ss_pred EEEECCCCC
Confidence 999987643
No 179
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.62 E-value=2.5e-07 Score=93.95 Aligned_cols=105 Identities=18% Similarity=0.332 Sum_probs=78.5
Q ss_pred eeEc-Chhhhhhhhh---cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCcc----cHhhhhhcCc
Q psy17502 140 VVEL-TDSNFEKLVY---NSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATV----HQRIAGEFNI 208 (461)
Q Consensus 140 v~~l-~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~----~~~l~~~~~i 208 (461)
...+ +.+++++.+. .++++++|.||++||++|+.+.+.. .++.+.++ ++.+..+|.++ +.+++++|++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCC
Confidence 3444 4456655442 3468999999999999999987764 56677775 58899999875 3678999999
Q ss_pred ccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 209 ~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
.++|++++|+++++. -...++.|..+.+++.+++.+.
T Consensus 533 ~g~Pt~~~~~~~G~~-i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQE-IPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCC-cccccccCCCCHHHHHHHHHHh
Confidence 999999999854320 0135678999999999998753
No 180
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.62 E-value=3.1e-06 Score=85.82 Aligned_cols=177 Identities=15% Similarity=0.183 Sum_probs=130.5
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC-CccccCCcchhH
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN-PTPYQGARTADA 112 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~-~~~y~g~~~~~~ 112 (461)
+++.|+.|.. .|..|..+..-+++++. +.+++.+-..+.. ...|++.+..+|+. -.+|.|.-...+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~-~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 85 (517)
T PRK15317 19 RPIELVASLD-DSEKSAELKELLEEIAS-LSDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE 85 (517)
T ss_pred CCEEEEEEeC-CCchHHHHHHHHHHHHH-hCCceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence 4455555655 79999998888888875 4456666442211 34799999876543 378999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEE
Q psy17502 113 IIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191 (461)
Q Consensus 113 i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f 191 (461)
+..|+...+.-. .+-..|+++..+.. .+ +++..+-.|.++.|++|......+.++|... +.+.+
T Consensus 86 f~s~i~~i~~~~-------------~~~~~l~~~~~~~i-~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~ 150 (517)
T PRK15317 86 FTSLVLALLQVG-------------GHPPKLDQEVIEQI-KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITH 150 (517)
T ss_pred HHHHHHHHHHhc-------------CCCCCCCHHHHHHH-HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceE
Confidence 999998875321 11234555554443 33 3456688999999999999999999998754 58999
Q ss_pred EEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 192 ~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
-.+|....++++++|++.++|++++ ++ ...+.|..+.+++.+.+...
T Consensus 151 ~~id~~~~~~~~~~~~v~~VP~~~i--~~------~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 151 TMIDGALFQDEVEARNIMAVPTVFL--NG------EEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred EEEEchhCHhHHHhcCCcccCEEEE--CC------cEEEecCCCHHHHHHHHhcc
Confidence 9999999999999999999999976 22 24578888889888888654
No 181
>KOG2501|consensus
Probab=98.60 E-value=7.7e-08 Score=77.80 Aligned_cols=66 Identities=27% Similarity=0.464 Sum_probs=56.5
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc---eEEEEEecCCch-------------------------hhHhhc
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGAVNADEEK-------------------------SLSSSH 84 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~---v~~~~vd~~~~~-------------------------~l~~~~ 84 (461)
.++.+.++|.|.||++||+|.|.+.+..++++.. +.++.|+.+.+. +++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4589999999999999999999999999988765 777777776543 388899
Q ss_pred CCCCccEEEEEc-CC
Q psy17502 85 GVTGFPTVKIFS-DK 98 (461)
Q Consensus 85 ~i~~~P~l~~~~-~g 98 (461)
+|.++|++.+.. +|
T Consensus 112 ~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 112 EVKGIPALVILKPDG 126 (157)
T ss_pred ccCcCceeEEecCCC
Confidence 999999999987 55
No 182
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.60 E-value=2.1e-07 Score=90.75 Aligned_cols=100 Identities=23% Similarity=0.411 Sum_probs=80.3
Q ss_pred eEcCcc-chhHHHhcCCC--eEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCc----hhhHhhcCCCC
Q psy17502 19 IKLTTS-NFDDKVIKSDE--VWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEE----KSLSSSHGVTG 88 (461)
Q Consensus 19 ~~l~~~-~f~~~~~~~~~--~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i~~ 88 (461)
..++.. ..++ .+.+++ ++++.|||+||-.||.+.+.. .+++.++.+ +.+.++|.+++ .++-++||+-+
T Consensus 457 q~~s~~~~L~~-~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQ-ALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHH-HHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 444444 6666 666666 999999999999999988755 334444444 89999998864 46889999999
Q ss_pred ccEEEEEc-CCCCCccccCCcchhHHHHHHHHH
Q psy17502 89 FPTVKIFS-DKRNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
.|++++|. +|+.+....|..+.+.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999999 777777799999999999999875
No 183
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.59 E-value=5.2e-07 Score=71.73 Aligned_cols=102 Identities=11% Similarity=0.137 Sum_probs=80.4
Q ss_pred eEcChhhhhhhhhcCCCeEEEEEeC--CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 141 VELTDSNFEKLVYNSDDIWLVEFFA--PWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
..++..+++.++ ......++.|-. ..++.+....-++.++++.+.+ ++.|+.+|++.+++++.+|||.++||+++|
T Consensus 20 ~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 20 TPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred CccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 355667787765 444444444432 2344556677799999999974 599999999999999999999999999999
Q ss_pred cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
++| .......|..+.+.+.+||.+..
T Consensus 99 kdG----k~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 99 TGG----NYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred ECC----EEEEEEeCcCCHHHHHHHHHHHh
Confidence 999 46667889999999999998765
No 184
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.55 E-value=3.8e-07 Score=83.40 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=69.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---------cHhhhhhcCcccccEEEEEcCCCCCCc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---------HQRIAGEFNIRGYPTIKFFSPGSRSAS 225 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---------~~~l~~~~~i~~~P~i~~~~~~~~~~~ 225 (461)
.+++++|.||++||++|+.+.+.+.++++.+.-.+..+.+|... +..+++++||.++|+++++.++++ .
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~--~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN--Q 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC--E
Confidence 36789999999999999999999999999985334444444321 356889999999999999997321 1
Q ss_pred CcccccCCCCHHHHHHHHHhhc
Q psy17502 226 DAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 226 ~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
......|..+.+.|.+.+....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHh
Confidence 2233558899999998887644
No 185
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.52 E-value=5.7e-07 Score=79.91 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=67.9
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhH-hhcCC-------------
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLS-SSHGV------------- 86 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~-~~~~i------------- 86 (461)
.+++++|.||++||+.|+...|++.+++++++++ +.++.|+++. . .+.+ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 4589999999999999999999999999999764 8888888741 1 1222 23221
Q ss_pred ---------------------CCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502 87 ---------------------TGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 87 ---------------------~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
++.|+.+++. +|+.+.+|.|..+.++|...|++.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 2347777776 7777888999998888888887664
No 186
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.50 E-value=7.9e-07 Score=66.51 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR 234 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~ 234 (461)
.+++-+..|+++||++|....+.+.+++... +++.+..+|.+..++++.+|+|.+.|++++ +| ...+.|..
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG------~~~~~G~~ 81 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NG------ELFGFGRM 81 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CC------EEEEeCCC
Confidence 3566788899999999999999999999776 579999999999999999999999999975 44 23345765
Q ss_pred CHHHH
Q psy17502 235 TSQDI 239 (461)
Q Consensus 235 ~~~~i 239 (461)
+.+++
T Consensus 82 ~~~e~ 86 (89)
T cd03026 82 TLEEI 86 (89)
T ss_pred CHHHH
Confidence 65554
No 187
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.50 E-value=6e-07 Score=74.71 Aligned_cols=77 Identities=26% Similarity=0.458 Sum_probs=61.5
Q ss_pred CCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCch---------------------hhHhhcCCC--
Q psy17502 33 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEK---------------------SLSSSHGVT-- 87 (461)
Q Consensus 33 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~---------------------~l~~~~~i~-- 87 (461)
.+++++|.||+. ||++|+..+|.+.++++.++++ +.++.|..+.++ .+.+++++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 577899999999 9999999999999999887653 777777766543 378889988
Q ss_pred -------CccEEEEEc-CCCCCccccCCcc
Q psy17502 88 -------GFPTVKIFS-DKRNPTPYQGART 109 (461)
Q Consensus 88 -------~~P~l~~~~-~g~~~~~y~g~~~ 109 (461)
++|+++++. +|+....+.|...
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 999988876 6655555666555
No 188
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.48 E-value=8.6e-07 Score=87.49 Aligned_cols=89 Identities=20% Similarity=0.292 Sum_probs=71.0
Q ss_pred hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEE----------------------------eCcccHhhh
Q psy17502 153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAV----------------------------DATVHQRIA 203 (461)
Q Consensus 153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v----------------------------~~~~~~~l~ 203 (461)
++.+++++|.|+++||++|+...|.+.++++.++ +.+.+..| .++.+..++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 4577899999999999999999999999999886 34555433 234456788
Q ss_pred hhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502 204 GEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL 244 (461)
Q Consensus 204 ~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~ 244 (461)
+.|+|.++|+++++.+.+ .....+.|..+.+.|..+|.
T Consensus 133 k~fgV~giPTt~IIDkdG---kIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDG---DVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcCCC---eEEEEEeCCCCHHHHHHHHH
Confidence 899999999997775432 35567889999999999987
No 189
>KOG1672|consensus
Probab=98.48 E-value=2e-07 Score=77.02 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=78.2
Q ss_pred ceEcC-ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 18 VIKLT-TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 18 v~~l~-~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
..++. +.+|.+ +.....-+++.||.|.-.+|+-+-.+++.+|+.+-+ ..|++||+.+.|-|+.+++|+.+|++.+|.
T Consensus 68 y~ev~~Ekdf~~-~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l~k 145 (211)
T KOG1672|consen 68 YEEVASEKDFFE-EVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVALFK 145 (211)
T ss_pred EEEeccHHHHHH-HhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEEEE
Confidence 34444 778888 677888899999999999999999999999998866 899999999999999999999999999999
Q ss_pred CCCCCccccCCcc
Q psy17502 97 DKRNPTPYQGART 109 (461)
Q Consensus 97 ~g~~~~~y~g~~~ 109 (461)
+|.....+-|-..
T Consensus 146 ~g~~~D~iVGF~d 158 (211)
T KOG1672|consen 146 NGKTVDYVVGFTD 158 (211)
T ss_pred cCEEEEEEeeHhh
Confidence 9977666666433
No 190
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.47 E-value=1.1e-06 Score=76.25 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=58.4
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe-------------c-----CCchhhHhhcCCCCccEEEE
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN-------------A-----DEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd-------------~-----~~~~~l~~~~~i~~~P~l~~ 94 (461)
.+++++|+||++||+.|+...|.+.++.++...++.++..| . ....++++.|++.++|+.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 56799999999999999999999999987654344443311 0 01345778899999999888
Q ss_pred Ec-CCCCCccccCC-cchhHHHHHHHH
Q psy17502 95 FS-DKRNPTPYQGA-RTADAIIDVALE 119 (461)
Q Consensus 95 ~~-~g~~~~~y~g~-~~~~~i~~~i~~ 119 (461)
+. +| .+ .+.|. ...+.+.+.+..
T Consensus 153 ID~~G-~I-~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 153 LDQDG-KI-RAKGLTNTREHLESLLEA 177 (189)
T ss_pred ECCCC-eE-EEccCCCCHHHHHHHHHH
Confidence 87 55 33 34454 344555555543
No 191
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.47 E-value=8.1e-07 Score=70.73 Aligned_cols=73 Identities=33% Similarity=0.606 Sum_probs=64.3
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-CchhhHhhcC--CCCccEEEEEcCCCCCccccC
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-EEKSLSSSHG--VTGFPTVKIFSDKRNPTPYQG 106 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~P~l~~~~~g~~~~~y~g 106 (461)
++++++.||++||++|+.+.|.+.++++++...+.+..+|.. ..+++...++ +..+|++.++.++.....+.|
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 678999999999999999999999999999877899999997 7899999999 999999998887765444454
No 192
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.47 E-value=1.4e-05 Score=80.90 Aligned_cols=180 Identities=13% Similarity=0.195 Sum_probs=131.0
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCC-CCccccCCcchh
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKR-NPTPYQGARTAD 111 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~-~~~~y~g~~~~~ 111 (461)
++++.|+.|.. .|..|..+..-+++++. +.+++.+...+... ...|++.+..+|+ .-.+|.|.-...
T Consensus 18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~-~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~ 85 (515)
T TIGR03140 18 ENPVTLVLSAG-SHEKSKELLELLDEIAS-LSDKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGH 85 (515)
T ss_pred CCCEEEEEEeC-CCchhHHHHHHHHHHHH-hCCCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcH
Confidence 34455666666 68999988887777775 45667775444221 3469999987654 347899999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEE
Q psy17502 112 AIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191 (461)
Q Consensus 112 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f 191 (461)
++..|+.....-. .+-..|+++..+....-+.+..+-.|.++.|++|......+.+++... +.+..
T Consensus 86 Ef~s~i~~i~~~~-------------~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~ 151 (515)
T TIGR03140 86 EFTSLVLAILQVG-------------GHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISH 151 (515)
T ss_pred HHHHHHHHHHHhc-------------CCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceE
Confidence 9999998865321 112345555554432123456688899999999999888998888775 47888
Q ss_pred EEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 192 ~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
-.+|....++++++|++.++|++++ ++ ...+.|..+.+++.+-+...
T Consensus 152 ~~id~~~~~~~~~~~~v~~VP~~~i--~~------~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 152 TMIDGALFQDEVEALGIQGVPAVFL--NG------EEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred EEEEchhCHHHHHhcCCcccCEEEE--CC------cEEEecCCCHHHHHHHHhhc
Confidence 8899999999999999999999987 22 24577888888887777554
No 193
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.46 E-value=9.1e-07 Score=77.30 Aligned_cols=89 Identities=9% Similarity=0.175 Sum_probs=65.4
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhHhhcCCC-------------
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLSSSHGVT------------- 87 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~~~~~i~------------- 87 (461)
.+++++|.|||+||+.|++.+|.+.+++++++++ +.++.|+|++ . ...++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 4679999999999999999999999999999764 8888898741 1 2344444431
Q ss_pred -----------------------Ccc---EEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502 88 -----------------------GFP---TVKIFS-DKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 88 -----------------------~~P---~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
.+| +.+++. +|....++.|..+.+.+...|...+
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 112 344554 7777778888888888877777654
No 194
>PLN02412 probable glutathione peroxidase
Probab=98.45 E-value=8.5e-07 Score=75.36 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=66.1
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c-hh----hHhhcC--------------
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E-KS----LSSSHG-------------- 85 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~-~~----l~~~~~-------------- 85 (461)
.+++++|.||++||+.|+...|.+.+++++++++ +.++.|+++. . .+ ++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 4589999999999999999999999999999864 8888888742 1 11 123322
Q ss_pred --------------------CCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502 86 --------------------VTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 86 --------------------i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
|.+.|+.+++. +|+....+.|..+.+++...|...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 33346666664 6666777888888888888877765
No 195
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.44 E-value=3.5e-06 Score=65.16 Aligned_cols=96 Identities=18% Similarity=0.338 Sum_probs=74.8
Q ss_pred eeEc-Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 140 VVEL-TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 140 v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
+..+ +.+++++++ . .+.+++|+|+... .......|.++|..+++.+.|+.. .+.++...+++. .|+++++
T Consensus 2 v~~i~~~~~~e~~~-~~~~~~~Vvg~f~~~---~~~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAFE-NIEDDIKLIGYFKSE---DSEHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHHh-cccCCeEEEEEECCC---CCHHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEEe
Confidence 3455 556677765 6 6888999999864 346788999999999999999875 456777888887 5999999
Q ss_pred cCCCCCCcCcccc-cCCCCHHHHHHHHHhh
Q psy17502 218 SPGSRSASDAQEY-NGGRTSQDIVTWALNK 246 (461)
Q Consensus 218 ~~~~~~~~~~~~y-~g~~~~~~i~~fi~~~ 246 (461)
++.. +....| .|..+.+.|.+||..+
T Consensus 74 ~~~~---e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFM---EEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCC---CCCcccCCCCCCHHHHHHHHHHh
Confidence 8742 355679 8889999999999764
No 196
>KOG0913|consensus
Probab=98.41 E-value=1.1e-07 Score=81.12 Aligned_cols=101 Identities=30% Similarity=0.652 Sum_probs=89.7
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
.++.++++++...+ ..-+++.|+++||+.|+...+.|.+.|.--.+ .+..+.||.+.++-|.-+|-+...|+|+-.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 57788999998875 34589999999999999999999998875544 699999999999999999999999999999
Q ss_pred cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
++| +.-+|.|.++.+++++|+..+-
T Consensus 102 kDG-----eFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 102 KDG-----EFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred ecc-----ccccccCcccchhHHHHHHhhh
Confidence 998 8899999999999999997664
No 197
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.41 E-value=2.3e-06 Score=73.51 Aligned_cols=88 Identities=14% Similarity=0.313 Sum_probs=71.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc----------------------cHhhhhhcCcccc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV----------------------HQRIAGEFNIRGY 211 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~----------------------~~~l~~~~~i~~~ 211 (461)
.+++++|.|+++||+.|+...+.+.++++.+.+ .+.+..++++. +..+++.|++...
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 467899999999999999999999999999875 47787777542 3567889999999
Q ss_pred cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502 212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
|+++++.+++ .....+.|..+.+++.+++.+
T Consensus 140 P~~~lid~~g---~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 140 PTTFLIDKDG---KVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CeEEEECCCC---cEEEEEeCCCCHHHHHHHHHH
Confidence 9999997653 244567899999999988864
No 198
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.41 E-value=8.4e-07 Score=64.09 Aligned_cols=68 Identities=16% Similarity=0.404 Sum_probs=52.2
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEEEcCCCCCccccCCcchhHH
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i 113 (461)
+..|+++||++|+.+.+.+.+ ..+.+..+|.++++. +++++++.++|++++. |+ ...| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~---~~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK---IIVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE---EEee-CCHHHH
Confidence 578999999999999887765 237888999987654 5677999999999985 32 2555 466777
Q ss_pred HHHH
Q psy17502 114 IDVA 117 (461)
Q Consensus 114 ~~~i 117 (461)
.+|+
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 7765
No 199
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.39 E-value=2.8e-06 Score=70.47 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=62.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc----------cHhhh-hhc---CcccccEEEEEcCC
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV----------HQRIA-GEF---NIRGYPTIKFFSPG 220 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~----------~~~l~-~~~---~i~~~P~i~~~~~~ 220 (461)
..+..+|.||++||++|+...|.+.+++++++-.+....+|... ..... ..+ ++.++|+.+++.+.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 34567999999999999999999999999885334334444211 12232 344 78899999999864
Q ss_pred CCCCcCcccccCCCCHHHHHHHHHh
Q psy17502 221 SRSASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 221 ~~~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
++ .....+.|..+.+++.+.+..
T Consensus 129 G~--~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 129 TR--KAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred CC--EEEEEeecccCHHHHHHHHHH
Confidence 21 123357899999988877654
No 200
>KOG0911|consensus
Probab=98.38 E-value=3.7e-06 Score=71.79 Aligned_cols=174 Identities=18% Similarity=0.282 Sum_probs=113.3
Q ss_pred cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchh
Q psy17502 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD 111 (461)
Q Consensus 32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~ 111 (461)
+..+..++.|+++||..|+++...++.+++.. .+..|++++.+..++++..+.+...|.+.++..|....+..|.....
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 36778999999999999999999999999988 56999999999999999999999999999998888888888877666
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCCCceeEc-------ChhhhhhhhhcCCCeEEEEEe-----CCCChhhhhhhHHHH
Q psy17502 112 AIIDVALEAIRQKVKGGKSGGRKGSSKAVVEL-------TDSNFEKLVYNSDDIWLVEFF-----APWCGHCKNLEPHWE 179 (461)
Q Consensus 112 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l-------~~~~~~~~~~~~~~~~~v~f~-----~~~c~~c~~~~~~~~ 179 (461)
....+-....... . ......++.+... .....++.+ +. + .++.|- .|.||.++.+..+++
T Consensus 94 ~~~~~~~~~~~~~-~----~~~~~~~~~~~e~~~~~~~~~~~~l~~lv-~a-~-~v~lFmKG~p~~P~CGFS~~~v~iL~ 165 (227)
T KOG0911|consen 94 LVSKVEKLAESGS-A----SLGMGLSTTIRETQTTNETDLDNRLEKLV-KA-K-PVMLFMKGTPEEPKCGFSRQLVGILQ 165 (227)
T ss_pred HHHHHHHhhhhcc-c----ccCCCCCcchhcccccchhhHHHHHHHhc-cc-C-eEEEEecCCCCcccccccHHHHHHHH
Confidence 5554443332111 0 0011111112111 011223222 22 2 334444 367887766665554
Q ss_pred HHHHHhcCceEEEEEeCcccHhhhhhcC-cccccEE-EEEcCC
Q psy17502 180 KAASELEGKVKLGAVDATVHQRIAGEFN-IRGYPTI-KFFSPG 220 (461)
Q Consensus 180 ~~a~~~~~~i~f~~v~~~~~~~l~~~~~-i~~~P~i-~~~~~~ 220 (461)
+. .+.|..+|+-+++++.+..+ ...+||+ -+|-+|
T Consensus 166 ~~------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G 202 (227)
T KOG0911|consen 166 SH------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG 202 (227)
T ss_pred Hc------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC
Confidence 42 45688888888888765443 2223444 344455
No 201
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.37 E-value=2.6e-06 Score=65.01 Aligned_cols=65 Identities=23% Similarity=0.511 Sum_probs=51.7
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcccH-------------------------hhhhhcCc
Q psy17502 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATVHQ-------------------------RIAGEFNI 208 (461)
Q Consensus 156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~~~-------------------------~l~~~~~i 208 (461)
+++++|.|+++||++|....+.+.++.+.++ +.+.|..|..+.+. .+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999998 67888888765432 36677888
Q ss_pred ccccEEEEEcCC
Q psy17502 209 RGYPTIKFFSPG 220 (461)
Q Consensus 209 ~~~P~i~~~~~~ 220 (461)
.+.|+++++.+.
T Consensus 81 ~~iP~~~lld~~ 92 (95)
T PF13905_consen 81 NGIPTLVLLDPD 92 (95)
T ss_dssp TSSSEEEEEETT
T ss_pred CcCCEEEEECCC
Confidence 888888888764
No 202
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.37 E-value=4.5e-06 Score=64.71 Aligned_cols=94 Identities=20% Similarity=0.365 Sum_probs=71.4
Q ss_pred ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCC--
Q psy17502 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGS-- 221 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~-- 221 (461)
+.+++++++ ..+++++|+|+... .......|.++|..+++.+.|+.. .+.+++..+++ .|++++|++..
T Consensus 7 s~~~l~~f~-~~~~~~Vvg~f~~~---~~~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~--~~~ivl~~p~~~~ 77 (104)
T cd03069 7 TEAEFEKFL-SDDDASVVGFFEDE---DSKLLSEFLKAADTLRESFRFAHT---SDKQLLEKYGY--GEGVVLFRPPRLS 77 (104)
T ss_pred CHHHHHHHh-ccCCcEEEEEEcCC---CchHHHHHHHHHHhhhhcCEEEEE---ChHHHHHhcCC--CCceEEEechhhh
Confidence 455666654 67888999999874 346789999999999999999886 45677888888 48899995421
Q ss_pred -CCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 222 -RSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 222 -~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
+..+....|+|+.+.++|.+||..+
T Consensus 78 ~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 78 NKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cccCcccccccCcCCHHHHHHHHHhh
Confidence 1113456699999999999999764
No 203
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.35 E-value=1.9e-06 Score=60.19 Aligned_cols=60 Identities=38% Similarity=0.744 Sum_probs=52.0
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHh---hcCCCCccEEEEEcCC
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSS---SHGVTGFPTVKIFSDK 98 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~P~l~~~~~g 98 (461)
++.|+++||++|+++.+.+.++ ......+.+..+|++......+ .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999988 4555679999999998877665 8899999999999865
No 204
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.34 E-value=2.7e-06 Score=69.27 Aligned_cols=66 Identities=20% Similarity=0.420 Sum_probs=52.3
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCccc------------------------HhhhhhcC
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVH------------------------QRIAGEFN 207 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~------------------------~~l~~~~~ 207 (461)
.+++++|.|+++||++|+...+.+.++++.+++ .+.+..++.+.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 357899999999999999999999999888863 355554443321 35778899
Q ss_pred cccccEEEEEcCC
Q psy17502 208 IRGYPTIKFFSPG 220 (461)
Q Consensus 208 i~~~P~i~~~~~~ 220 (461)
+.++|+++++.+.
T Consensus 97 v~~~P~~~lid~~ 109 (131)
T cd03009 97 IEGIPTLIILDAD 109 (131)
T ss_pred CCCCCEEEEECCC
Confidence 9999999999855
No 205
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.30 E-value=7.4e-06 Score=62.98 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=76.4
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHH-HHcC--CceEEEEEecC-----CchhhHhhcCC--
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA-TALK--GVVKVGAVNAD-----EEKSLSSSHGV-- 86 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a-~~~~--~~v~~~~vd~~-----~~~~l~~~~~i-- 86 (461)
..+.|+.-+|++ ++...+.+||.|=.. -+--.-+.+|.++| +... .++.++.|-.. ++.+|+++|++
T Consensus 5 G~v~LD~~tFdK-vi~kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDK-VIPKFKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHH-HGGGSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhh-eeccCceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 468999999999 899999999999632 22233466788888 4333 35899999875 35789999999
Q ss_pred CCccEEEEEc-CCCCCccc--cCCcchhHHHHHHHHHH
Q psy17502 87 TGFPTVKIFS-DKRNPTPY--QGARTADAIIDVALEAI 121 (461)
Q Consensus 87 ~~~P~l~~~~-~g~~~~~y--~g~~~~~~i~~~i~~~~ 121 (461)
+.+|.+++|. +...+.+| .|..+.+.|..|+..+.
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 5699999998 44667778 89999999999999874
No 206
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.29 E-value=4e-06 Score=68.39 Aligned_cols=66 Identities=20% Similarity=0.444 Sum_probs=52.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCccc-------------------------Hhhhhhc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVH-------------------------QRIAGEF 206 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~-------------------------~~l~~~~ 206 (461)
.+++++|.|+++||++|+...+.+.++++.+++ .+.+..++.+.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 368999999999999999999999999988874 355555544322 2456679
Q ss_pred CcccccEEEEEcCC
Q psy17502 207 NIRGYPTIKFFSPG 220 (461)
Q Consensus 207 ~i~~~P~i~~~~~~ 220 (461)
++.++|+++++...
T Consensus 96 ~v~~iPt~~lid~~ 109 (132)
T cd02964 96 KVEGIPTLVVLKPD 109 (132)
T ss_pred CCCCCCEEEEECCC
Confidence 99999999999755
No 207
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.29 E-value=3.3e-06 Score=68.38 Aligned_cols=80 Identities=16% Similarity=0.295 Sum_probs=58.8
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe-----------------------CcccHhhhhhcCcccc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD-----------------------ATVHQRIAGEFNIRGY 211 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~-----------------------~~~~~~l~~~~~i~~~ 211 (461)
.+++++|.|+++||+.|....+.+.++++.+. +.+..|+ ++....+++.|++.+.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 36789999999999999999999999987762 4444443 2345567888999999
Q ss_pred cEEEEEcCCCCCCcCcccccCCCCHHHH
Q psy17502 212 PTIKFFSPGSRSASDAQEYNGGRTSQDI 239 (461)
Q Consensus 212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i 239 (461)
|+.+++.+.+ .....+.|..+.+.|
T Consensus 102 P~~~~ld~~G---~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDG---IIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCc---eEEEEEeccCChHhc
Confidence 9776665432 245667788776643
No 208
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.28 E-value=4e-06 Score=71.30 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=62.4
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEE------EEEecCCc-----------------------------
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV------GAVNADEE----------------------------- 77 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~------~~vd~~~~----------------------------- 77 (461)
.+++.+|.|||.||++|+.-+|.+++++.+ .+.+ ..||.++.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 478999999999999999999999999653 1334 55565542
Q ss_pred hhhHhhcCCCCccEE-EEEc-CCCCCccccCCcchhHHHH
Q psy17502 78 KSLSSSHGVTGFPTV-KIFS-DKRNPTPYQGARTADAIID 115 (461)
Q Consensus 78 ~~l~~~~~i~~~P~l-~~~~-~g~~~~~y~g~~~~~~i~~ 115 (461)
..+...+++.++|+. +++. +|+....+.|..+.+++.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 135667899999876 6666 7777788899999888877
No 209
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.28 E-value=1.1e-05 Score=63.17 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=82.0
Q ss_pred ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHH---cCCceEEEEEecCCchhhHhhcCCCC--ccEE
Q psy17502 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATA---LKGVVKVGAVNADEEKSLSSSHGVTG--FPTV 92 (461)
Q Consensus 18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~---~~~~v~~~~vd~~~~~~l~~~~~i~~--~P~l 92 (461)
|.++|.+|+.. +....-+..++|+ .-..-..+...+.++|++ +++++.|+.+|.++.....+.+|++. .|.+
T Consensus 1 ~~e~t~e~~~~-~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEE-LTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHH-HhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 56789999998 7777777776777 333346789999999999 99999999999999888999999997 9999
Q ss_pred EEEcCCC-CCcc-ccCCcchhHHHHHHHHHH
Q psy17502 93 KIFSDKR-NPTP-YQGARTADAIIDVALEAI 121 (461)
Q Consensus 93 ~~~~~g~-~~~~-y~g~~~~~~i~~~i~~~~ 121 (461)
.+..... .... +.+..+.+.|.+|+....
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 9987422 2233 568899999999999875
No 210
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.25 E-value=4.9e-06 Score=65.74 Aligned_cols=65 Identities=28% Similarity=0.563 Sum_probs=57.3
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCccc-----------------------HhhhhhcCcccc
Q psy17502 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATVH-----------------------QRIAGEFNIRGY 211 (461)
Q Consensus 156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~~-----------------------~~l~~~~~i~~~ 211 (461)
++++++.|+++||+.|+...+.+.++.+.+. ..+.++.++.+.. ..+.+.|++.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 6789999999999999999999999999886 4688999888765 678889999999
Q ss_pred cEEEEEcCC
Q psy17502 212 PTIKFFSPG 220 (461)
Q Consensus 212 P~i~~~~~~ 220 (461)
|+++++.+.
T Consensus 99 P~~~l~d~~ 107 (116)
T cd02966 99 PTTFLIDRD 107 (116)
T ss_pred ceEEEECCC
Confidence 999999755
No 211
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.25 E-value=4.8e-06 Score=73.35 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=65.6
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-----------CchhhHhhcCCCCccEEEEEcCCC-C
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-----------EEKSLSSSHGVTGFPTVKIFSDKR-N 100 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~~~P~l~~~~~g~-~ 100 (461)
.++..|++||.+.|+.|+.+.|.+..++++++ +.+..|+.| .+..+++++||..+|++++...+. .
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 46789999999999999999999999999985 455555554 357899999999999999998432 3
Q ss_pred Cc-cccCCcchhHHHHH
Q psy17502 101 PT-PYQGARTADAIIDV 116 (461)
Q Consensus 101 ~~-~y~g~~~~~~i~~~ 116 (461)
.. .-.|..+.++|.+-
T Consensus 197 ~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEEeeecCCHHHHHHh
Confidence 33 34788998888764
No 212
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.25 E-value=1.1e-05 Score=69.16 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc-------h----------------------hhHh
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE-------K----------------------SLSS 82 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~-------~----------------------~l~~ 82 (461)
.++++||+||++||+.|....+++.++++++.+ ++.++.|+++.. + .+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 567999999999999999999999999999974 588888887531 1 3677
Q ss_pred hcCCCCccEEEEEc-CCCCCccc---------cCCcchhHHHHHHHHHH
Q psy17502 83 SHGVTGFPTVKIFS-DKRNPTPY---------QGARTADAIIDVALEAI 121 (461)
Q Consensus 83 ~~~i~~~P~l~~~~-~g~~~~~y---------~g~~~~~~i~~~i~~~~ 121 (461)
.|++...|+++++. +|+..... .+..+..++.+.|...+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 152 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALL 152 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHH
Confidence 88999999999997 55332111 12234566777776665
No 213
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.24 E-value=2.8e-06 Score=71.13 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=37.0
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecC
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNAD 75 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~ 75 (461)
.+++++|.||+.||+ |+...|.++++++++++ .+.+..|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 368999999999999 99999999999999975 4888888764
No 214
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.24 E-value=7.9e-06 Score=65.70 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=60.5
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe---------------------CcccHhhhhhcCcccccE
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD---------------------ATVHQRIAGEFNIRGYPT 213 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~---------------------~~~~~~l~~~~~i~~~P~ 213 (461)
.+++++|.|+++||+.|....+.+.++++.+. +....++ .+.+..+++.|++.+.|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 34789999999999999999999998887642 1111111 134457899999999999
Q ss_pred EEEEcCCCCCCcCcccccCCCCHHHHHH
Q psy17502 214 IKFFSPGSRSASDAQEYNGGRTSQDIVT 241 (461)
Q Consensus 214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~ 241 (461)
++++.++ .....+.|..+.+.|.+
T Consensus 97 ~~vid~~----gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 97 IVIVDPG----GIVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEEcCC----CeEEEEeccCCHHHHHh
Confidence 9999877 34445678888887653
No 215
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.24 E-value=2.4e-05 Score=63.12 Aligned_cols=108 Identities=15% Similarity=0.275 Sum_probs=83.3
Q ss_pred CceEcCccchhHHHhcCCCeEEEEEECC--CCHh-H-HhhHHHHHHHHHHcCCc-eEEEEEecCCchhhHhhcCCC--Cc
Q psy17502 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAP--WCGH-C-QSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSHGVT--GF 89 (461)
Q Consensus 17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~--~c~~-C-~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~i~--~~ 89 (461)
.|++|+++++.+..=.+++..+|.|... .|.. + ..+...+.++|++++++ +.|+.+|.++...+.+.||+. ++
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 6889998877553444566667766532 1332 3 45788999999999999 999999999999999999995 49
Q ss_pred cEEEEEcCCC-CCccccCCcchhHHHHHHHHHHhhh
Q psy17502 90 PTVKIFSDKR-NPTPYQGARTADAIIDVALEAIRQK 124 (461)
Q Consensus 90 P~l~~~~~g~-~~~~y~g~~~~~~i~~~i~~~~~~~ 124 (461)
|+++++...+ +...+.|..+.+.|.+|+...+...
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 9999998433 3333779999999999999998543
No 216
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.23 E-value=7e-06 Score=67.28 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=51.3
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--------ceEEEEEeCccc-------------------------Hh
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--------KVKLGAVDATVH-------------------------QR 201 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--------~i~f~~v~~~~~-------------------------~~ 201 (461)
.+++++|.|+|+||++|+...|.+.++++.+++ .+.+..|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 468999999999999999999999998876643 356666554321 24
Q ss_pred hhhhcCcccccEEEEEcCC
Q psy17502 202 IAGEFNIRGYPTIKFFSPG 220 (461)
Q Consensus 202 l~~~~~i~~~P~i~~~~~~ 220 (461)
++.+|++.++|+.+++...
T Consensus 104 l~~~y~v~~iPt~vlId~~ 122 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPD 122 (146)
T ss_pred HHHHcCCCCCCEEEEECCC
Confidence 6778889899999999865
No 217
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.21 E-value=5.7e-06 Score=69.37 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEec
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNA 74 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~ 74 (461)
.+++++|.||++||++|+...|.+.++++++++ .+.+..|+|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 457899999999999999999999999999975 488888886
No 218
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.21 E-value=1.6e-05 Score=62.94 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=71.1
Q ss_pred hcCCCeEEEEEeCCCChhhhhhhH-HHHH--HHHHhcCceEEEEEeCc--ccHhhhhhcCcccccEEEEEcC-CCCCCcC
Q psy17502 153 YNSDDIWLVEFFAPWCGHCKNLEP-HWEK--AASELEGKVKLGAVDAT--VHQRIAGEFNIRGYPTIKFFSP-GSRSASD 226 (461)
Q Consensus 153 ~~~~~~~~v~f~~~~c~~c~~~~~-~~~~--~a~~~~~~i~f~~v~~~--~~~~l~~~~~i~~~P~i~~~~~-~~~~~~~ 226 (461)
.+.+++++|+|+++||..|+.+.. .|.. +.+.+...+.+..+|.+ +...++..|++.++|+++++.+ .+ ..
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g---~~ 90 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTG---EV 90 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccC---cE
Confidence 466899999999999999999865 4433 55666667777777765 3567889999999999999986 32 35
Q ss_pred cccccCCCCHHHHHHHHHhh
Q psy17502 227 AQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 227 ~~~y~g~~~~~~i~~fi~~~ 246 (461)
.....|..+.+.+.+-+.+.
T Consensus 91 l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHH
Confidence 66778999999988877654
No 219
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.20 E-value=8.5e-06 Score=69.81 Aligned_cols=87 Identities=15% Similarity=0.251 Sum_probs=64.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe-----------------------CcccHhhhhhcCcccc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD-----------------------ATVHQRIAGEFNIRGY 211 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~-----------------------~~~~~~l~~~~~i~~~ 211 (461)
.+++++|.||++||++|+...+.+.++++. .+.+..++ .+.+..+.+.|++.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 568999999999999999999999888753 23333333 2333456778899999
Q ss_pred cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
|+.+++.+.+ .....+.|..+.+++.+++...+
T Consensus 139 P~~~~id~~G---~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 139 PETFLVDGNG---VILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeEEEEcCCc---eEEEEEeccCCHHHHHHHHHHHh
Confidence 9777775432 34556779999999999987654
No 220
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=98.20 E-value=1e-05 Score=59.41 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=77.9
Q ss_pred ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC--chhhHhhcCCC----Ccc-EEEEE
Q psy17502 23 TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE--EKSLSSSHGVT----GFP-TVKIF 95 (461)
Q Consensus 23 ~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P-~l~~~ 95 (461)
.++|.+ ++.....+||+|..+.-.-- .....+.++|+..+|+-.++.|||.+ .+.||+++.|. --| .|..|
T Consensus 9 ~KdfKK-LLRTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 9 HKDFKK-LLRTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred hHHHHH-HHhhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence 478888 77777888888876543333 34568999999999999999999987 68899999998 455 47778
Q ss_pred cCCCCCccccCCcchhHHHHHHHH
Q psy17502 96 SDKRNPTPYQGARTADAIIDVALE 119 (461)
Q Consensus 96 ~~g~~~~~y~g~~~~~~i~~~i~~ 119 (461)
++|..-..|....+...|+.|++.
T Consensus 87 KdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cCCCccccccchhhHHHHHHHhhC
Confidence 899888899999999999999874
No 221
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.20 E-value=2.1e-05 Score=60.19 Aligned_cols=94 Identities=19% Similarity=0.325 Sum_probs=73.8
Q ss_pred eEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCC
Q psy17502 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDK 98 (461)
Q Consensus 19 ~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g 98 (461)
..++..+..+.++..+++++|.|+..+|+ .....|.++|+.+++.+.|+.+. ++++++++++.. |++.+|+..
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~ 74 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF 74 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence 34545443333678889999999999988 46779999999998888998877 567888887764 899999853
Q ss_pred -CCCccccCCcchhHHHHHHHH
Q psy17502 99 -RNPTPYQGARTADAIIDVALE 119 (461)
Q Consensus 99 -~~~~~y~g~~~~~~i~~~i~~ 119 (461)
.....|.|..+.+.|.+|+..
T Consensus 75 ~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccCCccCCCCCCHHHHHHHHHh
Confidence 456779999999999999864
No 222
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.17 E-value=1.4e-05 Score=69.20 Aligned_cols=87 Identities=9% Similarity=0.194 Sum_probs=63.5
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-----------------------hhhhhcCcccc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-----------------------RIAGEFNIRGY 211 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-----------------------~l~~~~~i~~~ 211 (461)
.+++++|.|+++||++|+...|.+.++++. .+.+..|+.+.+. .++..|++.+.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 578999999999999999999999888652 3555555432211 23447889999
Q ss_pred cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
|+.+++.+.+ .....+.|..+.+.+.+++....
T Consensus 144 P~t~vid~~G---~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 144 PETFLIDGNG---IIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CeEEEECCCc---eEEEEEecCCCHHHHHHHHHHHH
Confidence 9877776442 24666789999988888886543
No 223
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.16 E-value=2.2e-05 Score=61.01 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=71.7
Q ss_pred eeEc-ChhhhhhhhhcCC-CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502 140 VVEL-TDSNFEKLVYNSD-DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217 (461)
Q Consensus 140 v~~l-~~~~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~ 217 (461)
+..+ +.++++.++ ..+ ++++|+|+... .......|.++|..+++.+.|+.. .+.++..++++.. |.+++|
T Consensus 2 v~~i~s~~ele~f~-~~~~~~~VVG~F~~~---~~~~~~~F~~vA~~~Rdd~~F~~t---~~~~~~~~~~~~~-~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFL-RDGDDVIIIGVFSGE---EDPAYQLYQDAANSLREDYKFHHT---FDSEIFKSLKVSP-GQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHH-hcCCCEEEEEEECCC---CCHHHHHHHHHHHhcccCCEEEEE---ChHHHHHhcCCCC-CceEEE
Confidence 3445 456677765 444 88999999874 236788999999999999999876 4567778888874 888898
Q ss_pred cCC---CCCCcCcccccCC-CCHHH-HHHHHHhh
Q psy17502 218 SPG---SRSASDAQEYNGG-RTSQD-IVTWALNK 246 (461)
Q Consensus 218 ~~~---~~~~~~~~~y~g~-~~~~~-i~~fi~~~ 246 (461)
++. .+..+....|+|. .+.++ |..|+..+
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 643 1222456678888 67766 99999753
No 224
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.15 E-value=5.5e-06 Score=75.06 Aligned_cols=102 Identities=18% Similarity=0.250 Sum_probs=73.7
Q ss_pred CCceEcCc-cchhHHHhcC---CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccE
Q psy17502 16 SDVIKLTT-SNFDDKVIKS---DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT 91 (461)
Q Consensus 16 ~~v~~l~~-~~f~~~~~~~---~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~ 91 (461)
..|.+|+. +.|-+ ++.. ...++|.||.+.+..|+.+...|..+|.++.. +.|++|.+...+ +..+|.+.++||
T Consensus 125 G~v~ei~~~e~~l~-~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 125 GEVYEIDSGEEFLD-AIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp -SEEE--SHHHHHH-HCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred ceEEEccChhhHHH-HHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence 46888865 77888 5543 34799999999999999999999999999876 999999988766 789999999999
Q ss_pred EEEEcCCCCCccccC-------CcchhHHHHHHHHH
Q psy17502 92 VKIFSDKRNPTPYQG-------ARTADAIIDVALEA 120 (461)
Q Consensus 92 l~~~~~g~~~~~y~g-------~~~~~~i~~~i~~~ 120 (461)
|++|++|..+..+-| ..+..++..|+.++
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999865544322 34455666666554
No 225
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.15 E-value=1.7e-05 Score=57.51 Aligned_cols=73 Identities=15% Similarity=0.400 Sum_probs=56.7
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccC-CcchhHHHHHH
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQG-ARTADAIIDVA 117 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g-~~~~~~i~~~i 117 (461)
|.+++++|++|..+...+.+++..++ +.+-.+|..+.+++ .+|||.++|++++ +|+ ..+.| ..+.+++.+|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHh
Confidence 34478889999999999999999884 77777888666677 9999999999965 553 46888 78888888887
Q ss_pred H
Q psy17502 118 L 118 (461)
Q Consensus 118 ~ 118 (461)
.
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 4
No 226
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.15 E-value=4.8e-06 Score=60.69 Aligned_cols=56 Identities=29% Similarity=0.498 Sum_probs=42.7
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc-----CCCCccEEEEEcCCCC
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH-----GVTGFPTVKIFSDKRN 100 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~P~l~~~~~g~~ 100 (461)
++.|+++||++|+++.+.+.+.. +.+-.+|.++++.....+ ++.++|++ ++.+|..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~ 62 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF 62 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence 67899999999999998876542 455678888777665553 89999997 4666643
No 227
>smart00594 UAS UAS domain.
Probab=98.13 E-value=2.5e-05 Score=62.54 Aligned_cols=104 Identities=9% Similarity=0.126 Sum_probs=72.5
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHH-HHH--HHHHhcCceEEEEEeCcc--cHhhhhhcCcccccEE
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPH-WEK--AASELEGKVKLGAVDATV--HQRIAGEFNIRGYPTI 214 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~-~~~--~a~~~~~~i~f~~v~~~~--~~~l~~~~~i~~~P~i 214 (461)
...-+-++..+...++++.++|+|+++||+.|..+... |.. +.+.+...+.+..+|.+. ...++.+|++.++|++
T Consensus 11 f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~ 90 (122)
T smart00594 11 FYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYV 90 (122)
T ss_pred eeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence 33344444444445677899999999999999988653 333 445555667776777653 5678999999999999
Q ss_pred EEEcCCCCCC--cCcccccCCCCHHHHHHHH
Q psy17502 215 KFFSPGSRSA--SDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 215 ~~~~~~~~~~--~~~~~y~g~~~~~~i~~fi 243 (461)
.++.+.+... .......|..+.+++..++
T Consensus 91 ~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 91 AIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9997653110 1244678999999888765
No 228
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.11 E-value=0.0001 Score=56.83 Aligned_cols=103 Identities=17% Similarity=0.330 Sum_probs=76.2
Q ss_pred ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHH-HHhc--CceEEEEEeCc-----ccHhhhhhcCcc-
Q psy17502 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAA-SELE--GKVKLGAVDAT-----VHQRIAGEFNIR- 209 (461)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a-~~~~--~~i~f~~v~~~-----~~~~l~~~~~i~- 209 (461)
..+.|++-+|++.+ ...+.++|-|=... + --+-...|.++| +... +++.+|.|-+. .+.+|+++|++.
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay-P-yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY-P-YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC-C-CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 46789999999986 56688999985421 1 135578999999 4443 57999998663 378899999994
Q ss_pred -cccEEEEEcCCCCCCcCcccc--cCCCCHHHHHHHHHhhc
Q psy17502 210 -GYPTIKFFSPGSRSASDAQEY--NGGRTSQDIVTWALNKY 247 (461)
Q Consensus 210 -~~P~i~~~~~~~~~~~~~~~y--~g~~~~~~i~~fi~~~~ 247 (461)
.+|.+++|..+. +++..| .|+.+.++|..|+..++
T Consensus 82 e~fPv~~LF~~~~---~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 82 EDFPVIYLFVGDK---EEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp CC-SEEEEEESST---TSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred ccCCEEEEecCCC---CCCccCCccCCccHHHHHHHHHhCC
Confidence 589999999543 477878 88999999999999875
No 229
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.11 E-value=2.1e-05 Score=70.49 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=70.6
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-----------hhhHhhcCCCCccEEEEEcCC-CCC
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-----------KSLSSSHGVTGFPTVKIFSDK-RNP 101 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-----------~~l~~~~~i~~~P~l~~~~~g-~~~ 101 (461)
++..|++||...|++|+++.|.+..++++++ +.+..|+.|.. ..+++++||..+|++++...+ +..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4589999999999999999999999999986 55555555543 458999999999999998733 333
Q ss_pred cc-ccCCcchhHHHHHHHHHHhhh
Q psy17502 102 TP-YQGARTADAIIDVALEAIRQK 124 (461)
Q Consensus 102 ~~-y~g~~~~~~i~~~i~~~~~~~ 124 (461)
.. -.|..+.++|.+-+...+...
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHhcc
Confidence 33 379999999998887776443
No 230
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.10 E-value=8.9e-06 Score=60.10 Aligned_cols=66 Identities=33% Similarity=0.541 Sum_probs=49.7
Q ss_pred hcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502 153 YNSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219 (461)
Q Consensus 153 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~ 219 (461)
.+++++++|.|+++||+.|+.+...+ .++.+.+..++.+..+|.+....... +...++|+++++.+
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLDP 82 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEET
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeCC
Confidence 46789999999999999999998776 34555466789999999876554332 22256999999853
No 231
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.09 E-value=8.6e-06 Score=64.50 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=46.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe---CcccHhhhhhcCcccccEE
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD---ATVHQRIAGEFNIRGYPTI 214 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~---~~~~~~l~~~~~i~~~P~i 214 (461)
.+++++|.|+++||++|+...+.+.++++.+.+.+.+..+. .+....+++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 36789999999999999999999999988886666665552 2234457778888777865
No 232
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.07 E-value=4e-05 Score=59.90 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=75.4
Q ss_pred eEcCccchhHHHhcCCCeEEEEE---ECCCCHhHHhhHHHHHHHHHHcC-CceEEEEEecCCchhhHhhcCCCC----cc
Q psy17502 19 IKLTTSNFDDKVIKSDEVWIVEY---YAPWCGHCQSFKDEYMKLATALK-GVVKVGAVNADEEKSLSSSHGVTG----FP 90 (461)
Q Consensus 19 ~~l~~~~f~~~~~~~~~~~lv~f---~~~~c~~C~~~~~~~~~~a~~~~-~~v~~~~vd~~~~~~l~~~~~i~~----~P 90 (461)
-++|.+|... . ...+..++++ |+..-..-..+...+.++|+.++ +++.|+.+|.++.....+.||+.. .|
T Consensus 2 ~~~~~en~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 2 GHRTKDNRAQ-F-TKKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred CeeccchHHH-h-ccCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 4678888888 4 3444455543 23344556778999999999999 799999999998877889999984 99
Q ss_pred EEEEEcCCCCCccccCCc-chhHHHHHHHHH
Q psy17502 91 TVKIFSDKRNPTPYQGAR-TADAIIDVALEA 120 (461)
Q Consensus 91 ~l~~~~~g~~~~~y~g~~-~~~~i~~~i~~~ 120 (461)
++.+...........+.. +.+.|.+|+...
T Consensus 80 ~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 80 VVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 999987322222346777 999999999764
No 233
>KOG2603|consensus
Probab=98.07 E-value=3.8e-05 Score=68.79 Aligned_cols=109 Identities=18% Similarity=0.294 Sum_probs=85.2
Q ss_pred CCCCceEcCccchhHHHhcCC---CeEEEEEECC----CCHhHHhhHHHHHHHHHHcC------C--ceEEEEEecCCch
Q psy17502 14 SYSDVIKLTTSNFDDKVIKSD---EVWIVEYYAP----WCGHCQSFKDEYMKLATALK------G--VVKVGAVNADEEK 78 (461)
Q Consensus 14 ~~~~v~~l~~~~f~~~~~~~~---~~~lv~f~~~----~c~~C~~~~~~~~~~a~~~~------~--~v~~~~vd~~~~~ 78 (461)
+.+.|+.+++++|.+ ++... -..+|+|.|. .|.-|+++..||.-+|..+. + ++-|+.||.++.+
T Consensus 38 s~~~VI~~n~d~~~~-~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSK-FVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred CCCCeEEecCcchhh-hccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 457799999999999 65532 3588888876 59999999999999998763 1 5889999999999
Q ss_pred hhHhhcCCCCccEEEEEcC--C--CCC---ccccCCcchhHHHHHHHHHHhh
Q psy17502 79 SLSSSHGVTGFPTVKIFSD--K--RNP---TPYQGARTADAIIDVALEAIRQ 123 (461)
Q Consensus 79 ~l~~~~~i~~~P~l~~~~~--g--~~~---~~y~g~~~~~~i~~~i~~~~~~ 123 (461)
++.+.++++..|++++|.. | +.. ..+.-...++.+.+|+..+++=
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence 9999999999999999952 1 111 1122234488999999888643
No 234
>KOG0914|consensus
Probab=98.03 E-value=1.4e-05 Score=67.51 Aligned_cols=83 Identities=25% Similarity=0.487 Sum_probs=67.9
Q ss_pred ceeEc-Chhhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcccHhhhhhcCccc-----
Q psy17502 139 AVVEL-TDSNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATVHQRIAGEFNIRG----- 210 (461)
Q Consensus 139 ~v~~l-~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~~~~l~~~~~i~~----- 210 (461)
.+..+ +.+.+++.+. +....|+|.||+.|.+.|....|.|.+++.++. +.+.||++|+...++.+.+|+|..
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 35556 4445544432 334689999999999999999999999999997 479999999999999999998874
Q ss_pred -ccEEEEEcCCC
Q psy17502 211 -YPTIKFFSPGS 221 (461)
Q Consensus 211 -~P~i~~~~~~~ 221 (461)
.||+++|.+|.
T Consensus 205 QLPT~ilFq~gk 216 (265)
T KOG0914|consen 205 QLPTYILFQKGK 216 (265)
T ss_pred cCCeEEEEccch
Confidence 69999999884
No 235
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.99 E-value=1.6e-05 Score=58.98 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=42.8
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-----hhHhhcCCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-----SLSSSHGVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~P~l~~ 94 (461)
++.|+++||++|+.+.+.+.+.. ..+.+.+..||.+.+. .+.+.+++..+|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47899999999999999998876 3344677777766443 2667789999999854
No 236
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.98 E-value=3.3e-05 Score=62.10 Aligned_cols=66 Identities=21% Similarity=0.467 Sum_probs=54.4
Q ss_pred CCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch---------------------hhHhhcCCC--
Q psy17502 33 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK---------------------SLSSSHGVT-- 87 (461)
Q Consensus 33 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~---------------------~l~~~~~i~-- 87 (461)
.+++++|.||+. ||++|+...+++.++.++++. .+.++.|..+... .+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 568999999999 999999999999999999875 4888888876543 367778887
Q ss_pred ----CccEEEEEcCC
Q psy17502 88 ----GFPTVKIFSDK 98 (461)
Q Consensus 88 ----~~P~l~~~~~g 98 (461)
.+|+++++..+
T Consensus 104 ~~~~~~p~~~lid~~ 118 (124)
T PF00578_consen 104 KDTLALPAVFLIDPD 118 (124)
T ss_dssp TTSEESEEEEEEETT
T ss_pred cCCceEeEEEEECCC
Confidence 78888888743
No 237
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.95 E-value=3.5e-05 Score=83.97 Aligned_cols=90 Identities=14% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEe-----C----------------------cccHhhhhhc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVD-----A----------------------TVHQRIAGEF 206 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~-----~----------------------~~~~~l~~~~ 206 (461)
.+++++|.|+++||++|+...|.++++++++++. +.+..|. . +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4689999999999999999999999999999754 6665552 1 1233567789
Q ss_pred CcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502 207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 207 ~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 247 (461)
++.++|+++++.+.+ .....+.|....+.+.+++....
T Consensus 499 ~V~~iPt~ilid~~G---~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNG---KLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCC---eEEEEEecccCHHHHHHHHHHHH
Confidence 999999999996442 34556789888889888887664
No 238
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.94 E-value=3.1e-05 Score=64.00 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=56.2
Q ss_pred EcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCchhhHhhc--------CCCC
Q psy17502 20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEKSLSSSH--------GVTG 88 (461)
Q Consensus 20 ~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~ 88 (461)
..+++.|.. ..+++++++|.++.+||+.|+.+..+- .++|+.++..+.-++||.++.+++...| |..|
T Consensus 24 ~w~~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gG 102 (163)
T PF03190_consen 24 PWGEEALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGG 102 (163)
T ss_dssp -SSHHHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---
T ss_pred cCCHHHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCC
Confidence 345567777 788999999999999999999987643 6778888777899999999999998888 7899
Q ss_pred ccEEEEEc-CC
Q psy17502 89 FPTVKIFS-DK 98 (461)
Q Consensus 89 ~P~l~~~~-~g 98 (461)
+|+.++.. +|
T Consensus 103 wPl~vfltPdg 113 (163)
T PF03190_consen 103 WPLTVFLTPDG 113 (163)
T ss_dssp SSEEEEE-TTS
T ss_pred CCceEEECCCC
Confidence 99888876 44
No 239
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.94 E-value=6.6e-05 Score=63.52 Aligned_cols=83 Identities=12% Similarity=0.168 Sum_probs=61.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-------------ccHhhhhhcCc--ccccEEEEEcCCCCCC
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-------------VHQRIAGEFNI--RGYPTIKFFSPGSRSA 224 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-------------~~~~l~~~~~i--~~~P~i~~~~~~~~~~ 224 (461)
+|.|+++||++|+...|.+.++++++. +.+..|+.+ ....+...|++ .++|+.+++...++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~-- 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL-- 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc--
Confidence 778999999999999999999999984 444333322 12335667884 58999999976632
Q ss_pred cC-cccccCCCCHHHHHHHHHhhc
Q psy17502 225 SD-AQEYNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 225 ~~-~~~y~g~~~~~~i~~fi~~~~ 247 (461)
. ...+.|..+.+++.+.|....
T Consensus 149 -i~~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 149 -EALPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred -EEEEEEECCCCHHHHHHHHHHHH
Confidence 2 236889999998887776543
No 240
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.94 E-value=3.5e-05 Score=63.47 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch---------------------hhHhhcCCCCc-
Q psy17502 34 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK---------------------SLSSSHGVTGF- 89 (461)
Q Consensus 34 ~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~---------------------~l~~~~~i~~~- 89 (461)
+++++|.|| +.||+.|....+.+.++++++.+ .+.++.|..+... .+++.||+...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 678999999 58999999999999999998864 4667666654322 36667788777
Q ss_pred --------cEEEEEc-CCCCCccccCCcchhHHHH
Q psy17502 90 --------PTVKIFS-DKRNPTPYQGARTADAIID 115 (461)
Q Consensus 90 --------P~l~~~~-~g~~~~~y~g~~~~~~i~~ 115 (461)
|+.+++. +|+....+.|......+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 8888887 5666677777766555544
No 241
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.93 E-value=9.4e-05 Score=58.27 Aligned_cols=91 Identities=9% Similarity=0.038 Sum_probs=69.3
Q ss_pred HhcCCCeEEEEEECC----CCHhHHhhHHHHHHHHHHcCCceEEEEEecCC--chhhHhhcCCCCccEEEEEc--CC--C
Q psy17502 30 VIKSDEVWIVEYYAP----WCGHCQSFKDEYMKLATALKGVVKVGAVNADE--EKSLSSSHGVTGFPTVKIFS--DK--R 99 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~----~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~~--~g--~ 99 (461)
.-++.++++|++|++ ||..|+.... =.++.+-++.++.+...|++. ..+++..++++.+|++.++. ++ .
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 345778999999999 7888876531 133444455668888888864 46799999999999999984 22 2
Q ss_pred CCccccCCcchhHHHHHHHHHH
Q psy17502 100 NPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 100 ~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
.+.+..|..+++++...++..+
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHHH
Confidence 3567899999999999998765
No 242
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.93 E-value=5.4e-05 Score=60.31 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=45.2
Q ss_pred hhcCCCeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCcc-cHhhhhhcCcccccEEEEEcCCC
Q psy17502 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWE---KAASELEGKVKLGAVDATV-HQRIAGEFNIRGYPTIKFFSPGS 221 (461)
Q Consensus 152 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~i~f~~v~~~~-~~~l~~~~~i~~~P~i~~~~~~~ 221 (461)
..+++++++|.|+++||++|+.+...+- ++++.+..++....++.+. +.... ..+ .++|+++++.+.+
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g 90 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSL 90 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCC
Confidence 3577899999999999999999977543 2445554455555555432 11221 233 5689999998654
No 243
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.91 E-value=4.6e-05 Score=74.81 Aligned_cols=102 Identities=19% Similarity=0.356 Sum_probs=74.7
Q ss_pred eEcChh-hhhhhhhcCCC--eEEEEEeCCCChhhhhhhHH-HHHHHHHhc-CceEEEEEeCcc----cHhhhhhcCcccc
Q psy17502 141 VELTDS-NFEKLVYNSDD--IWLVEFFAPWCGHCKNLEPH-WEKAASELE-GKVKLGAVDATV----HQRIAGEFNIRGY 211 (461)
Q Consensus 141 ~~l~~~-~~~~~~~~~~~--~~~v~f~~~~c~~c~~~~~~-~~~~a~~~~-~~i~f~~v~~~~----~~~l~~~~~i~~~ 211 (461)
..++.. ++++.+ .+++ ++++.|||+||-.|+.+.+. |.......+ .++...+.|.|. +.++.++||+-+.
T Consensus 457 q~~s~~~~L~~~l-a~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQAL-AEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHH-HhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 344444 666654 3444 99999999999999988763 433322222 468888888775 3567889999999
Q ss_pred cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
|++++|..+++ +.....|-.+.+.+.+++++.
T Consensus 536 P~~~ff~~~g~---e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGS---EPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCC---cCcCCcceecHHHHHHHHHHh
Confidence 99999996643 444578999999999998764
No 244
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.89 E-value=6.6e-05 Score=66.92 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=68.2
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC---------chhhHhhcCCCCccEEEEEcCC-CCCc-
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE---------EKSLSSSHGVTGFPTVKIFSDK-RNPT- 102 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~P~l~~~~~g-~~~~- 102 (461)
++..|++||.+.|++|.++.|.+..++++++=.+..+.+|..- +...++++||..+|++++...+ +...
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 4589999999999999999999999999986444444554422 2346789999999999999733 2332
Q ss_pred cccCCcchhHHHHHHHHHHh
Q psy17502 103 PYQGARTADAIIDVALEAIR 122 (461)
Q Consensus 103 ~y~g~~~~~~i~~~i~~~~~ 122 (461)
--.|..+.++|.+-+.....
T Consensus 223 v~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 223 LSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EeeccCCHHHHHHHHHHHHh
Confidence 33799999999888876653
No 245
>KOG2603|consensus
Probab=97.88 E-value=0.00013 Score=65.51 Aligned_cols=110 Identities=20% Similarity=0.389 Sum_probs=86.0
Q ss_pred CceeEcChhhhhhhhhcCCC--eEEEEEeC----CCChhhhhhhHHHHHHHHHhc------C--ceEEEEEeCcccHhhh
Q psy17502 138 KAVVELTDSNFEKLVYNSDD--IWLVEFFA----PWCGHCKNLEPHWEKAASELE------G--KVKLGAVDATVHQRIA 203 (461)
Q Consensus 138 ~~v~~l~~~~~~~~~~~~~~--~~~v~f~~----~~c~~c~~~~~~~~~~a~~~~------~--~i~f~~v~~~~~~~l~ 203 (461)
..|+.++++.+..++....+ -.+|.|.| ..|.-|.+...+|.-+|...+ + ++-|+.||.++.+++.
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F 119 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF 119 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence 56999999999998754333 35666665 379999999999999998886 2 5889999999999999
Q ss_pred hhcCcccccEEEEEcCCCCCCcCcccccC---CCCHHHHHHHHHhhc
Q psy17502 204 GEFNIRGYPTIKFFSPGSRSASDAQEYNG---GRTSQDIVTWALNKY 247 (461)
Q Consensus 204 ~~~~i~~~P~i~~~~~~~~~~~~~~~y~g---~~~~~~i~~fi~~~~ 247 (461)
+++++++.|++++|.+...+..+...+++ ..+++++.+|+....
T Consensus 120 q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 120 QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRT 166 (331)
T ss_pred HHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhh
Confidence 99999999999999765333333333332 245999999998876
No 246
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.85 E-value=4.8e-05 Score=61.15 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=50.6
Q ss_pred cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc---CCCCccEEEEEcC
Q psy17502 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH---GVTGFPTVKIFSD 97 (461)
Q Consensus 21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~P~l~~~~~ 97 (461)
++++....+.....+..++.|..+|||.|++..|.+.++++... .+.+-.+.-++++++.++| |.+.+|+++++.+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 44444444223355678888999999999999999999999754 4777777777788777665 6888999999974
Q ss_pred -CCCCcc
Q psy17502 98 -KRNPTP 103 (461)
Q Consensus 98 -g~~~~~ 103 (461)
|+...+
T Consensus 107 ~~~~lg~ 113 (129)
T PF14595_consen 107 DGKELGR 113 (129)
T ss_dssp T--EEEE
T ss_pred CCCEeEE
Confidence 444333
No 247
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.85 E-value=3.6e-05 Score=58.78 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=68.7
Q ss_pred CCceEcCccchhHHHhcCCCeEEEEEECCCCHh---HHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGH---CQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV 92 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~---C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l 92 (461)
.....++.+++++ ++......+++|. ..|.. +....-.+-++.+.+.+.+..+.|.-..++.|..+||+..+|++
T Consensus 9 ~g~~~vd~~~ld~-~l~~~~~~vlf~~-gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 9 HGWPRVDADTLDA-FLAAPGDAVLFFA-GDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp -TEEEE-CCCHHH-HHHCCSCEEEEES-S-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred cCCeeechhhHHH-HHhCCCcEEEEEC-CCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence 4567889999999 7777766655555 44443 44444466667777888888888998888999999999999999
Q ss_pred EEEcCCCCCccccCCcchh
Q psy17502 93 KIFSDKRNPTPYQGARTAD 111 (461)
Q Consensus 93 ~~~~~g~~~~~y~g~~~~~ 111 (461)
+++++|+......|.++-+
T Consensus 87 vf~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 87 VFFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp EEEETTEEEEEEESSSTHH
T ss_pred EEEECCEEEEEecCeeccc
Confidence 9999987666666666544
No 248
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.81 E-value=0.00012 Score=63.21 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=34.9
Q ss_pred CC-eEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecC
Q psy17502 34 DE-VWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD 75 (461)
Q Consensus 34 ~~-~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~ 75 (461)
++ .+++.+||+||++|+..+|.+++++++++++ +.++.|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 44 4456669999999999999999999999763 888888864
No 249
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.81 E-value=0.0001 Score=63.17 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502 33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS 82 (461)
Q Consensus 33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~ 82 (461)
.+++++|.|| +.||++|....+++.++++++.+ .+.++.|+.+.. ..+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3578999999 89999999999999999999864 466666665432 13556
Q ss_pred hcCCC------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHHH
Q psy17502 83 SHGVT------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALEA 120 (461)
Q Consensus 83 ~~~i~------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~~ 120 (461)
+|++. ..|+.+++. +|.....+.+ .++.+++...|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 67775 467888887 5544445533 23556677777553
No 250
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.80 E-value=9.9e-05 Score=61.45 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=36.7
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchh
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKS 79 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~ 79 (461)
.+..+++.|++.||+.|+...|.+.++++++.+ .+.++.|+.+....
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~ 70 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK 70 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence 344555555699999999999999999999864 48888888776543
No 251
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.76 E-value=0.00017 Score=61.31 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=36.7
Q ss_pred CCCeEEEEEECCC-CHhHHhhHHHHHHHHHHcCCceEEEEEecCC
Q psy17502 33 SDEVWIVEYYAPW-CGHCQSFKDEYMKLATALKGVVKVGAVNADE 76 (461)
Q Consensus 33 ~~~~~lv~f~~~~-c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~ 76 (461)
.+++++|.||+.| |+.|....|.+.++++++. .+.++.|+++.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCC
Confidence 4568999999999 9999999999999999985 57777777663
No 252
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.76 E-value=0.00014 Score=63.15 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=61.7
Q ss_pred CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC-------------------------chhhHhhcC
Q psy17502 33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE-------------------------EKSLSSSHG 85 (461)
Q Consensus 33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 85 (461)
.+++++|.|| +.||+.|....+++.++++++.+ .+.++.|+++. +..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3568999999 99999999999999999998864 35666666542 224777888
Q ss_pred CC------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHH
Q psy17502 86 VT------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALE 119 (461)
Q Consensus 86 i~------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~ 119 (461)
+. ..|+.+++. +|.....+.+ .+..+++...|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 86 358888886 6644433321 3467777777654
No 253
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.75 E-value=0.00017 Score=58.20 Aligned_cols=66 Identities=12% Similarity=0.272 Sum_probs=48.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc---------------------------ccHhhhhhc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT---------------------------VHQRIAGEF 206 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~---------------------------~~~~l~~~~ 206 (461)
.+++++|.|++.||+.|....+.+.++++.+++ .+.+..|... ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 357999999999999999999999999999974 4666665321 112345567
Q ss_pred CcccccEEEEEcCC
Q psy17502 207 NIRGYPTIKFFSPG 220 (461)
Q Consensus 207 ~i~~~P~i~~~~~~ 220 (461)
++.++|+.+++.+.
T Consensus 102 ~v~~~P~~~vid~~ 115 (126)
T cd03012 102 GNQYWPALYLIDPT 115 (126)
T ss_pred CCCcCCeEEEECCC
Confidence 77777877777543
No 254
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.74 E-value=0.00025 Score=51.32 Aligned_cols=71 Identities=20% Similarity=0.408 Sum_probs=53.7
Q ss_pred EeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC-CCCHHHHHH
Q psy17502 163 FFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVT 241 (461)
Q Consensus 163 f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~ 241 (461)
+++++|++|..+...+.+++..+ + +.+-.++....+++ .+||+.+.|++++ + ....|.| --+.+.|.+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--n------g~~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSVPALVI--N------GKVVFVGRVPSKEELKE 73 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSSSEEEE--T------TEEEEESS--HHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCCCEEEE--C------CEEEEEecCCCHHHHHH
Confidence 36888999999999999999888 3 66666676556666 9999999999976 2 3466888 567788888
Q ss_pred HHH
Q psy17502 242 WAL 244 (461)
Q Consensus 242 fi~ 244 (461)
|+.
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 873
No 255
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.74 E-value=0.0016 Score=66.68 Aligned_cols=195 Identities=15% Similarity=0.184 Sum_probs=126.1
Q ss_pred hhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502 148 FEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASD 226 (461)
Q Consensus 148 ~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~ 226 (461)
+.+.+.+- +++.++.|..+.|..|.++....++++ .+.+++.+...|..++.+++++|++...|++.+++.+.. ..
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~--~~ 433 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGN--YT 433 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCc--cc
Confidence 44444333 345677888888888999998888888 556788888888778888999999999999999964321 23
Q ss_pred cccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHh-cCCCeEE-EEEeCCccccChhhHHHHHHHHHHHHHh
Q psy17502 227 AQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEAC-EDHPLCI-VAVLPHILDCQSSCRNNYLEILQKLGDK 304 (461)
Q Consensus 227 ~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~va~~ 304 (461)
..+|.|--.-.++..||.....-..+.+. + ++...+... -+.+..+ +++.+. ..........++++|..
T Consensus 434 ~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~---l-~~~~~~~i~~~~~~~~i~v~~~~~-----C~~Cp~~~~~~~~~~~~ 504 (555)
T TIGR03143 434 GLKFHGVPSGHELNSFILALYNAAGPGQP---L-GEELLEKIKKITKPVNIKIGVSLS-----CTLCPDVVLAAQRIASL 504 (555)
T ss_pred ceEEEecCccHhHHHHHHHHHHhcCCCCC---C-CHHHHHHHHhcCCCeEEEEEECCC-----CCCcHHHHHHHHHHHHh
Confidence 47787755555566666544322222222 2 233333222 2345434 334443 34455677788888888
Q ss_pred ccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHH
Q psy17502 305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFL 363 (461)
Q Consensus 305 ~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi 363 (461)
..+. ....++...++++++.+++. ..|+++|-. .+. +.|..+.+.|.+++
T Consensus 505 ~~~i--~~~~i~~~~~~~~~~~~~v~--~vP~~~i~~---~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 505 NPNV--EAEMIDVSHFPDLKDEYGIM--SVPAIVVDD---QQV--YFGKKTIEEMLELI 554 (555)
T ss_pred CCCc--eEEEEECcccHHHHHhCCce--ecCEEEECC---EEE--EeeCCCHHHHHHhh
Confidence 7643 45555666789999999998 689998842 222 34666888887765
No 256
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.72 E-value=0.00023 Score=55.82 Aligned_cols=66 Identities=14% Similarity=0.281 Sum_probs=46.3
Q ss_pred CCCeEEEEEECC-------CCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-------hhHh--hcCCCCccEEEEEc
Q psy17502 33 SDEVWIVEYYAP-------WCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-------SLSS--SHGVTGFPTVKIFS 96 (461)
Q Consensus 33 ~~~~~lv~f~~~-------~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-------~l~~--~~~i~~~P~l~~~~ 96 (461)
.+++++|+|++. ||+.|+...|.+.++-....+...++.|.+...+ .... +++++++|||+-+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 457899999854 9999999999999999887667888888774322 2333 58999999999998
Q ss_pred CC
Q psy17502 97 DK 98 (461)
Q Consensus 97 ~g 98 (461)
.+
T Consensus 98 ~~ 99 (119)
T PF06110_consen 98 TG 99 (119)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 257
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.66 E-value=0.00093 Score=49.84 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=72.0
Q ss_pred cceeecCHHHHHHHhc-CCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc-eEEEecccccchhHHH----hhC
Q psy17502 255 EIKQIVSEATFKEACE-DHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQPDLEN----VLE 328 (461)
Q Consensus 255 ~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~~~~~----~lg 328 (461)
.++.++.++.++.... -....+++|.. ....+-..++++++++|+.++... ..++++|.+.++-+.. .||
T Consensus 2 tlrkl~~~~m~e~wedd~~g~~IvAFae----e~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~ 77 (120)
T cd03074 2 TLRKLKPENMFETWEDDLDGIHIVAFAE----EEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFG 77 (120)
T ss_pred chhhccHHHHHHhhhcccCCceEEEEec----cCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcC
Confidence 3444555555544321 12445555532 234455678899999999998654 7899999888876655 477
Q ss_pred CCCCCCccEEEEccCc--cccccCCC---CCCHHHHHHHHHHHh
Q psy17502 329 IGGFGYPAMAVLNAKK--MKYSLLKG---PFSYDGINEFLRDLS 367 (461)
Q Consensus 329 l~~~~~P~l~i~~~~~--~k~~~~~~---~~~~~~i~~Fi~~~~ 367 (461)
|.- .-|.|.+++... ..+.-..+ ..+.+.|..||++++
T Consensus 78 IDl-~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 78 IDL-FRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ccc-CCCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 775 369999999875 23322222 368999999999874
No 258
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.65 E-value=0.00018 Score=60.40 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=55.8
Q ss_pred CCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch---------------------hhHhhcCCCCc
Q psy17502 33 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK---------------------SLSSSHGVTGF 89 (461)
Q Consensus 33 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~---------------------~l~~~~~i~~~ 89 (461)
.+++++|.||+. ||+.|....+.+.++++++++ .+.++.|+.+... .++++||+.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 456899999976 688899999999999998865 3777777765332 35666776543
Q ss_pred ------------cEEEEEc-CCCCCccccCCcchhH
Q psy17502 90 ------------PTVKIFS-DKRNPTPYQGARTADA 112 (461)
Q Consensus 90 ------------P~l~~~~-~g~~~~~y~g~~~~~~ 112 (461)
|+.+++. +|.....|.|....+.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 5556665 6666666777554444
No 259
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.65 E-value=0.00033 Score=52.11 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=64.1
Q ss_pred CCeEEEEEeCCccccChh-hHHHHHHHHHHHHHhcc----Cc----c-eEEEecccccchhHHHhhCCCCCCCccEEEEc
Q psy17502 272 HPLCIVAVLPHILDCQSS-CRNNYLEILQKLGDKYK----QK----V-WGWIWSEAVAQPDLENVLEIGGFGYPAMAVLN 341 (461)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~va~~~~----~~----~-f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~ 341 (461)
...|++.|... ..+ ..+...+.++.+|.++- .+ . .-|+..+.+....+.+..++.. .-|.++|++
T Consensus 14 ~~p~lvlf~D~----Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d-~~P~LviLD 88 (116)
T cd03071 14 EGPCLVLFVDS----EDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPE-AAPLLTILD 88 (116)
T ss_pred CCceEEEEecc----cchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCc-cCceEEEEe
Confidence 34556655432 233 46677777887776542 21 1 3456666656666777778875 689999999
Q ss_pred cCc-cccccCCCCCCHHHHHHHHHHHh
Q psy17502 342 AKK-MKYSLLKGPFSYDGINEFLRDLS 367 (461)
Q Consensus 342 ~~~-~k~~~~~~~~~~~~i~~Fi~~~~ 367 (461)
... ++|.+..+++|.+.+.+|+.+|+
T Consensus 89 ip~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 89 MSARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ccccceEeCchHhcCHHHHHHHHHHhh
Confidence 766 78988888999999999999986
No 260
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.65 E-value=0.00017 Score=53.64 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=54.9
Q ss_pred EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch----hhHhhcC--CCCccEEEEEcCCCCCccccCCcch
Q psy17502 37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK----SLSSSHG--VTGFPTVKIFSDKRNPTPYQGARTA 110 (461)
Q Consensus 37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~P~l~~~~~g~~~~~y~g~~~~ 110 (461)
-++.|+.+||++|+++...++++..++. .+.+..+|.+++. ++.+..+ +..+|++++ +|+.+. ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig------g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG------GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc------CH
Confidence 3788999999999999999999987653 4888888887643 4555555 488999864 554322 23
Q ss_pred hHHHHHHHHHH
Q psy17502 111 DAIIDVALEAI 121 (461)
Q Consensus 111 ~~i~~~i~~~~ 121 (461)
+++.++++..+
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T PRK11200 73 TDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHhc
Confidence 56677666543
No 261
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.65 E-value=0.00015 Score=64.85 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=59.1
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEE-----------------------------------------
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA----------------------------------------- 71 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~----------------------------------------- 71 (461)
+.+..++.|+.|.|++|+++.+++.++.+. .-.+.+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC-CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 346789999999999999999998876531 00111111
Q ss_pred -EecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502 72 -VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 72 -vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
.+..++.++++++||+++|+++ +.+|+ ...|..+.+.|.+++...
T Consensus 185 ~~~v~~~~~la~~lgi~gTPtiv-~~~G~---~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFGVQGTPAIV-LSNGT---LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcCCccccEEE-EcCCe---EeeCCCCHHHHHHHHHHc
Confidence 1112233589999999999999 56664 358999999999998764
No 262
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.64 E-value=0.00021 Score=49.34 Aligned_cols=60 Identities=37% Similarity=0.766 Sum_probs=49.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh---hcCcccccEEEEEcCC
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG---EFNIRGYPTIKFFSPG 220 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~---~~~i~~~P~i~~~~~~ 220 (461)
++.|+.+||++|....+.+.++ ......+.+..++++....... .+++...|+++++..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4678999999999999999988 4555689999999887665544 7888899999999865
No 263
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.63 E-value=0.00031 Score=55.44 Aligned_cols=65 Identities=37% Similarity=0.725 Sum_probs=57.9
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-ccHhhhhhcC--cccccEEEEEcCC
Q psy17502 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-VHQRIAGEFN--IRGYPTIKFFSPG 220 (461)
Q Consensus 156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-~~~~l~~~~~--i~~~P~i~~~~~~ 220 (461)
+.++++.|+++||++|....+.+.++++.+...+.+..++.. ....+...++ +..+|++.++.++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCc
Confidence 678889989999999999999999999999777888888886 6788889999 8889999988876
No 264
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.62 E-value=0.00015 Score=59.93 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCCeEEEEEECCCCHh-HHhhHHHHHHHHHHcCC----ceEEEEEecCC
Q psy17502 33 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALKG----VVKVGAVNADE 76 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~-C~~~~~~~~~~a~~~~~----~v~~~~vd~~~ 76 (461)
.+++++|.||++||+. |....+.+.++++++++ ++.+..|+.+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5679999999999998 99999999999999865 38888887653
No 265
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.59 E-value=0.00058 Score=59.31 Aligned_cols=85 Identities=20% Similarity=0.204 Sum_probs=56.7
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe-------------C-----cccHhhhhhcCcccccEEEE
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD-------------A-----TVHQRIAGEFNIRGYPTIKF 216 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~-------------~-----~~~~~l~~~~~i~~~P~i~~ 216 (461)
.+++++|.|+++||+.|+...|.+.++.+...-.+.++..+ . ....++++.|++.+.|+.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 46789999999999999999999999887654334443311 0 11345677889999999888
Q ss_pred EcCCCCCCcCcccccCC-CCHHHHHHHHH
Q psy17502 217 FSPGSRSASDAQEYNGG-RTSQDIVTWAL 244 (461)
Q Consensus 217 ~~~~~~~~~~~~~y~g~-~~~~~i~~fi~ 244 (461)
+.+. ....+.|. ...+.+.+.+.
T Consensus 153 ID~~-----G~I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 153 LDQD-----GKIRAKGLTNTREHLESLLE 176 (189)
T ss_pred ECCC-----CeEEEccCCCCHHHHHHHHH
Confidence 7754 23334454 24455555554
No 266
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.57 E-value=0.00029 Score=50.38 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=38.5
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc----CCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH----GVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~----~i~~~P~l~~ 94 (461)
++.|+++||++|+++...+.+. .+.+..+|.+.++...+.+ ++..+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5789999999999988776652 3667778887665544433 7889999976
No 267
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.54 E-value=0.00043 Score=49.57 Aligned_cols=68 Identities=16% Similarity=0.329 Sum_probs=49.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh----hhhhcCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR----IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT 235 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~----l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~ 235 (461)
+..|+++||++|....+.+.+ ..+.+..+|++.++. +.+.+++.++|++++. + .. ..| .+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-----~~--~~g-~~ 65 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-----KI--IVG-FD 65 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-----EE--Eee-CC
Confidence 467899999999998877755 247778888776543 5567899999999884 3 11 445 46
Q ss_pred HHHHHHHH
Q psy17502 236 SQDIVTWA 243 (461)
Q Consensus 236 ~~~i~~fi 243 (461)
.+.|.+|+
T Consensus 66 ~~~i~~~i 73 (74)
T TIGR02196 66 PEKLDQLL 73 (74)
T ss_pred HHHHHHHh
Confidence 78887776
No 268
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.53 E-value=0.00051 Score=60.63 Aligned_cols=86 Identities=14% Similarity=0.182 Sum_probs=65.8
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc---------ccHhhhhhcCcccccEEEEEcCCCCCCc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT---------VHQRIAGEFNIRGYPTIKFFSPGSRSAS 225 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~---------~~~~l~~~~~i~~~P~i~~~~~~~~~~~ 225 (461)
.++..++.||.+.|+.|..+.+++..+++.+.=.+..+.+|.. .+..+++++||..+|++++....++ .
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~--~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK--K 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC--e
Confidence 3678899999999999999999999999999534555555521 3577899999999999999998742 1
Q ss_pred CcccccCCCCHHHHHHH
Q psy17502 226 DAQEYNGGRTSQDIVTW 242 (461)
Q Consensus 226 ~~~~y~g~~~~~~i~~f 242 (461)
....-.|-.+.++|.+=
T Consensus 197 ~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEEeeecCCHHHHHHh
Confidence 22233588888887653
No 269
>KOG3425|consensus
Probab=97.52 E-value=0.00063 Score=51.95 Aligned_cols=65 Identities=15% Similarity=0.298 Sum_probs=52.9
Q ss_pred CCCeEEEEEEC--------CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-------hhHhhcCC-CCccEEEEEc
Q psy17502 33 SDEVWIVEYYA--------PWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-------SLSSSHGV-TGFPTVKIFS 96 (461)
Q Consensus 33 ~~~~~lv~f~~--------~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-------~l~~~~~i-~~~P~l~~~~ 96 (461)
+++-++|+|++ +||+.|.+..|.+.++-+....++.|+.|++.+-+ .+....++ .++|||.=+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 45569999985 49999999999999999977778999999987533 35555666 8999999887
Q ss_pred C
Q psy17502 97 D 97 (461)
Q Consensus 97 ~ 97 (461)
+
T Consensus 104 ~ 104 (128)
T KOG3425|consen 104 R 104 (128)
T ss_pred C
Confidence 4
No 270
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.46 E-value=0.00081 Score=61.08 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=72.2
Q ss_pred ceeEcC-hhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502 139 AVVELT-DSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK 215 (461)
Q Consensus 139 ~v~~l~-~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~ 215 (461)
.|..++ .+.|.+.+... ...++|.||.+.+..|..+...+..+|..+ ..++|.++...... +...|.+...|+|+
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC-cccCCcccCCCEEE
Confidence 477775 46777765332 346889999999999999999999999999 57999998765433 67789999999999
Q ss_pred EEcCCCCCCcCccc---ccC-CCCHHHHHHHHHhhc
Q psy17502 216 FFSPGSRSASDAQE---YNG-GRTSQDIVTWALNKY 247 (461)
Q Consensus 216 ~~~~~~~~~~~~~~---y~g-~~~~~~i~~fi~~~~ 247 (461)
+|++|.... .... .-| +++..+|..|+.++.
T Consensus 204 vYk~G~l~~-~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 204 VYKNGDLIG-NFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEETTEEEE-EECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEECCEEEE-eEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 999873211 1111 223 578889999998764
No 271
>KOG2501|consensus
Probab=97.46 E-value=0.00036 Score=56.78 Aligned_cols=66 Identities=21% Similarity=0.519 Sum_probs=50.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-----eEEEEEeCcc-----------------------cHhhhhhc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-----VKLGAVDATV-----------------------HQRIAGEF 206 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-----i~f~~v~~~~-----------------------~~~l~~~~ 206 (461)
.++++.++|.+.||++|+.+.|...++.+.++.. +.|+.-|-+. .++++.+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 3589999999999999999999988888877654 4444444221 12477899
Q ss_pred CcccccEEEEEcCC
Q psy17502 207 NIRGYPTIKFFSPG 220 (461)
Q Consensus 207 ~i~~~P~i~~~~~~ 220 (461)
+|.+.|++++..+.
T Consensus 112 ~v~~iP~l~i~~~d 125 (157)
T KOG2501|consen 112 EVKGIPALVILKPD 125 (157)
T ss_pred ccCcCceeEEecCC
Confidence 99999999998876
No 272
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.43 E-value=0.00062 Score=51.72 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=58.8
Q ss_pred CccchhHHHhcC--CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCC-ccEEEE
Q psy17502 22 TTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTG-FPTVKI 94 (461)
Q Consensus 22 ~~~~f~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~-~P~l~~ 94 (461)
|.+.+++ +++. +++++|+=+++.|+-+.....+|++......+.+.++.+|.-+.+. ++++|||.+ -|.+++
T Consensus 6 t~eql~~-i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 6 TEEQLEE-ILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp SHHHHHH-HHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred CHHHHHH-HHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 3466777 6665 7799999999999999999999999999887779999999988764 788999986 999999
Q ss_pred EcCCCCC
Q psy17502 95 FSDKRNP 101 (461)
Q Consensus 95 ~~~g~~~ 101 (461)
+++|+.+
T Consensus 85 i~~g~~v 91 (105)
T PF11009_consen 85 IKNGKVV 91 (105)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 9998654
No 273
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.43 E-value=0.00065 Score=58.23 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=46.0
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC--------c---hhhHh-hcCCCCccEEEEE
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE--------E---KSLSS-SHGVTGFPTVKIF 95 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~--------~---~~l~~-~~~i~~~P~l~~~ 95 (461)
.++++||.|+|.||+.|++ .+.++++++++++ .+.+..+.|+. . .++|+ ++++. +|.+.-.
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~ 97 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKI 97 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEE
Confidence 4689999999999999975 8899999999976 48899998852 1 23554 56663 6655334
No 274
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.43 E-value=0.0017 Score=48.03 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=71.6
Q ss_pred cceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecc--cccchhHHHhhCCCCC
Q psy17502 255 EIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSE--AVAQPDLENVLEIGGF 332 (461)
Q Consensus 255 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d--~~~~~~~~~~lgl~~~ 332 (461)
.+..+++...+...+..+.-+++.|.. +..+....+..+.++|...+|.. ..+++| ......+++.+.+.++
T Consensus 2 ~ie~i~d~KdfKKLLRTr~NVLvLy~k-----s~k~a~~~Lk~~~~~A~~vkG~g-T~~~vdCgd~e~kKLCKKlKv~~~ 75 (112)
T cd03067 2 LIEDISDHKDFKKLLRTRNNVLVLYSK-----SAKSAEALLKLLSDVAQAVKGQG-TIAWIDCGDSESRKLCKKLKVDPS 75 (112)
T ss_pred ccccccchHHHHHHHhhcCcEEEEEec-----chhhHHHHHHHHHHHHHHhcCce-eEEEEecCChHHHHHHHHHccCCC
Confidence 345566777777777665555555543 36677888899999999999987 455555 4457889999999855
Q ss_pred CCccEEEE-ccCccccc-cCCCCCCHHHHHHHHHH
Q psy17502 333 GYPAMAVL-NAKKMKYS-LLKGPFSYDGINEFLRD 365 (461)
Q Consensus 333 ~~P~l~i~-~~~~~k~~-~~~~~~~~~~i~~Fi~~ 365 (461)
..|.=..+ +-.++.|. -|+..++..+|..|+++
T Consensus 76 ~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 76 SKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CCCCcchhhcccCCCccccccchhhHHHHHHHhhC
Confidence 55553333 22223332 24557889999999975
No 275
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.40 E-value=0.0011 Score=57.22 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=63.3
Q ss_pred CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC-------------------------chhhHhhcC
Q psy17502 33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE-------------------------EKSLSSSHG 85 (461)
Q Consensus 33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 85 (461)
.++++++.|| +.||+.|....+.|.+.++++.+ .+.+..|+.+. +..++++||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3458899999 99999999999999999999854 36666666543 235778888
Q ss_pred C----CCc--cEEEEEc-CCCCCccc----cCCcchhHHHHHHHHH
Q psy17502 86 V----TGF--PTVKIFS-DKRNPTPY----QGARTADAIIDVALEA 120 (461)
Q Consensus 86 i----~~~--P~l~~~~-~g~~~~~y----~g~~~~~~i~~~i~~~ 120 (461)
+ .+. |+.++.. +|.....+ ...++.+++...+...
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 8889887 55433222 2346888888887553
No 276
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.38 E-value=0.0013 Score=54.52 Aligned_cols=66 Identities=20% Similarity=0.419 Sum_probs=51.8
Q ss_pred CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc---------------------cHhhhhhcCcc--
Q psy17502 155 SDDIWLVEFFAP-WCGHCKNLEPHWEKAASELEG-KVKLGAVDATV---------------------HQRIAGEFNIR-- 209 (461)
Q Consensus 155 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~---------------------~~~l~~~~~i~-- 209 (461)
.+++++|.|++. ||++|....+.+.++++.+++ .+.+..+..+. +..+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 468899999999 999999999999999888664 46665554322 23578889988
Q ss_pred -------cccEEEEEcCC
Q psy17502 210 -------GYPTIKFFSPG 220 (461)
Q Consensus 210 -------~~P~i~~~~~~ 220 (461)
++|+.+++...
T Consensus 107 ~~~~~~~~~P~~~lId~~ 124 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKD 124 (146)
T ss_dssp CCTTTTSSSSEEEEEETT
T ss_pred cccccCCeecEEEEEECC
Confidence 89998888765
No 277
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.38 E-value=0.00051 Score=60.21 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=53.5
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCce--EEE-----------------------------------------
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVV--KVG----------------------------------------- 70 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v--~~~----------------------------------------- 70 (461)
.+..++.|+.+.|++|+++.+.+.+. .+++ .+.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 46899999999999999999888751 1111 111
Q ss_pred --EEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502 71 --AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 71 --~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i 117 (461)
..+..++..+++++||+++|+++ +.+|.. +.|..+.+.|.+|+
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 11222233588999999999997 777643 57888888777653
No 278
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.38 E-value=0.00071 Score=55.59 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=36.7
Q ss_pred CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC
Q psy17502 33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE 76 (461)
Q Consensus 33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~ 76 (461)
.+++++|.|| +.||+.|....+.+.+++++++. .+.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5678899999 78999999999999999999853 47777777654
No 279
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.37 E-value=0.00091 Score=55.64 Aligned_cols=45 Identities=7% Similarity=0.137 Sum_probs=35.7
Q ss_pred cCCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC
Q psy17502 32 KSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE 76 (461)
Q Consensus 32 ~~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~ 76 (461)
+..++++|.|| ++||+.|....|++.++++++.+ .+.++.|+.+.
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 34467777777 99999999999999999999864 47777776553
No 280
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.37 E-value=0.0012 Score=57.64 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=36.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDA 196 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~ 196 (461)
.+++++|.|+++||+.|....+.+.++++.+++ .+.+..|++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 357999999999999999999999999999975 478877765
No 281
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.33 E-value=0.00074 Score=55.79 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=44.7
Q ss_pred CCCeEEEEEECCC-CHhHHhhHHHHHHHHHHcCCceEEEEEecCCch---hhHhhcCCCCcc
Q psy17502 33 SDEVWIVEYYAPW-CGHCQSFKDEYMKLATALKGVVKVGAVNADEEK---SLSSSHGVTGFP 90 (461)
Q Consensus 33 ~~~~~lv~f~~~~-c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~P 90 (461)
.++++++.||+.| |++|+..+|.+.++++++. .+.++.|+.+... +..+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 3578999999998 6999999999999999986 5888899887542 344555655555
No 282
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.31 E-value=0.00092 Score=45.82 Aligned_cols=51 Identities=29% Similarity=0.447 Sum_probs=39.5
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 94 (461)
++.|+.+||++|+.+...|.+. .+.+-.+|.+++++ +.+..|...+|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999988777322 27888889887654 444459999999987
No 283
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.31 E-value=0.0029 Score=53.40 Aligned_cols=82 Identities=26% Similarity=0.412 Sum_probs=62.3
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHc--CCceEEEEEecCCch--------------------------------
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATAL--KGVVKVGAVNADEEK-------------------------------- 78 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~--~~~v~~~~vd~~~~~-------------------------------- 78 (461)
..++.++.|+...|++|+.+.+.+.++.+++ .+++.+..++.....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3468999999999999999999999999998 678888877663211
Q ss_pred ------------------------------------hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHH
Q psy17502 79 ------------------------------------SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE 119 (461)
Q Consensus 79 ------------------------------------~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~ 119 (461)
..+++.||.++||+++ +|+. +.|..+.+++.+.|.+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 1556678999999888 6643 5778888888887753
No 284
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.28 E-value=0.0011 Score=58.23 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=61.8
Q ss_pred CCe-EEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC---------------------------chhhHhhc
Q psy17502 34 DEV-WIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE---------------------------EKSLSSSH 84 (461)
Q Consensus 34 ~~~-~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~---------------------------~~~l~~~~ 84 (461)
++. +|+.|++.||+.|....+.+.+.++++++ .+.++.|+++. +..+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 444 44568899999999999999999998864 36666666552 12467778
Q ss_pred CCC------CccEEEEEc-CCCCCcc----ccCCcchhHHHHHHHHHH
Q psy17502 85 GVT------GFPTVKIFS-DKRNPTP----YQGARTADAIIDVALEAI 121 (461)
Q Consensus 85 ~i~------~~P~l~~~~-~g~~~~~----y~g~~~~~~i~~~i~~~~ 121 (461)
|+. .+|+++++. +|..... ..+.++.+++...+....
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 874 489999997 4432211 245688899988887643
No 285
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.28 E-value=0.0024 Score=56.95 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=36.4
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDA 196 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~ 196 (461)
.+++++|.|+++||+.|....+.+.++++.+++ .+.+..|++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 358999999999999999999999999999975 477777765
No 286
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.26 E-value=0.0036 Score=53.42 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=52.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcc-----------------------------cHhhhh
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATV-----------------------------HQRIAG 204 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~-----------------------------~~~l~~ 204 (461)
.++++++.|+++||+.|....+.+.+++..+. ..+.|..|..+. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 46789999999999999999999999999987 367777775532 123566
Q ss_pred hcCcccccEEEEEcCC
Q psy17502 205 EFNIRGYPTIKFFSPG 220 (461)
Q Consensus 205 ~~~i~~~P~i~~~~~~ 220 (461)
.|++...|+++++.+.
T Consensus 104 ~~~v~~~P~~~lid~~ 119 (171)
T cd02969 104 AYGAACTPDFFLFDPD 119 (171)
T ss_pred HcCCCcCCcEEEECCC
Confidence 7888889999999765
No 287
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.24 E-value=0.0027 Score=52.99 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=27.8
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 64 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~ 64 (461)
+.++.++.|+.++|++|+.+.|.+.++...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 35689999999999999999999999877664
No 288
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.22 E-value=0.0014 Score=48.03 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=60.3
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC--CCCCccccCCcchhHHHH
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD--KRNPTPYQGARTADAIID 115 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~--g~~~~~y~g~~~~~~i~~ 115 (461)
+++|+.+.|+-|..+...+..+.... .+.+-.||+++++++.++|+. .+|.+.+-.. ........+..+.+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 78999999999999998888865443 389999999999999999996 7999877541 111345677888999988
Q ss_pred HHH
Q psy17502 116 VAL 118 (461)
Q Consensus 116 ~i~ 118 (461)
|++
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 289
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.22 E-value=0.00089 Score=49.77 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=51.2
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc----hhhHhhcCC--CCccEEEEEcCCCCCccccCCcchh
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE----KSLSSSHGV--TGFPTVKIFSDKRNPTPYQGARTAD 111 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i--~~~P~l~~~~~g~~~~~y~g~~~~~ 111 (461)
++.|+.+||++|+++...+.++..+.. .+.+..+|.+.+ .++.+..|- ..+|++++ +|+.+ -..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i------gG~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV------GGCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe------cCHH
Confidence 678999999999999988888765433 367777887643 356666664 78999965 44321 2236
Q ss_pred HHHHHHHHH
Q psy17502 112 AIIDVALEA 120 (461)
Q Consensus 112 ~i~~~i~~~ 120 (461)
+|.+++.+.
T Consensus 73 dl~~~~~~~ 81 (86)
T TIGR02183 73 DFEQLVKEN 81 (86)
T ss_pred HHHHHHHhc
Confidence 677776654
No 290
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.21 E-value=0.0059 Score=47.02 Aligned_cols=94 Identities=11% Similarity=0.237 Sum_probs=69.5
Q ss_pred eEc-CccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 19 IKL-TTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 19 ~~l-~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
..| +.++.++ ++. +++.++|-|+..--+ .....|.++|..++..+.|+... +.++.+++++. .|++++++
T Consensus 3 ~~i~~~~~~e~-~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~ 74 (102)
T cd03066 3 EIINSERELQA-FENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYE 74 (102)
T ss_pred eEcCCHHHHHH-HhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeC
Confidence 455 4455777 777 778888888766444 35668999999998888886654 45677788775 69999997
Q ss_pred C-CCCCccc-cCCcchhHHHHHHHHH
Q psy17502 97 D-KRNPTPY-QGARTADAIIDVALEA 120 (461)
Q Consensus 97 ~-g~~~~~y-~g~~~~~~i~~~i~~~ 120 (461)
+ ......| .|..+.+.|.+||...
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 4 4455669 7888999999999753
No 291
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.20 E-value=0.00075 Score=49.89 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=40.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-----hhhhhcCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-----RIAGEFNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-----~l~~~~~i~~~P~i~~ 216 (461)
++.|+++||++|....+.+.++. ..+.+.+..++.+.+. .+.+..++.++|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 46899999999999999998876 3344677777654332 2566678889999854
No 292
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.18 E-value=0.001 Score=67.59 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=79.5
Q ss_pred CCceEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502 16 SDVIKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 94 (461)
..-..|+++.-+. +.+ .++.-+-.|++++|++|......+.+++... ..|..-.||..+.++++++|+|.++|++++
T Consensus 98 ~~~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 98 GHPPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQDEVEARNIMAVPTVFL 175 (517)
T ss_pred CCCCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHhHHHhcCCcccCEEEE
Confidence 3445666666665 433 3456799999999999999999999998864 468899999999999999999999999976
Q ss_pred EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502 95 FSDKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
+|+ ..+.|..+.+++.+.+.+..
T Consensus 176 --~~~--~~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 176 --NGE--EFGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred --CCc--EEEecCCCHHHHHHHHhccc
Confidence 443 34789999988888887653
No 293
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.17 E-value=0.0011 Score=48.71 Aligned_cols=53 Identities=23% Similarity=0.368 Sum_probs=39.7
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-h----hhHhhcCCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-K----SLSSSHGVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-~----~l~~~~~i~~~P~l~~ 94 (461)
++.|+++||++|+.+.+.+.++.. ...+..++.+.+ . .+.+..|+..+|++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 578999999999999988887654 356667776654 2 3556678899999743
No 294
>PRK15000 peroxidase; Provisional
Probab=97.16 E-value=0.0021 Score=56.28 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502 33 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS 82 (461)
Q Consensus 33 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~ 82 (461)
.++.+++.||+. ||+.|....++|.+.+++++. .+.++.|+++.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 457899999985 999999999999999999864 366666666521 13666
Q ss_pred hcCCC------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHH
Q psy17502 83 SHGVT------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALE 119 (461)
Q Consensus 83 ~~~i~------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~ 119 (461)
.||+. ..|+.+++. +|.....+.| .++.++++..+..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 77876 688888887 5543333333 4677788877754
No 295
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.09 E-value=0.0035 Score=56.88 Aligned_cols=83 Identities=12% Similarity=0.244 Sum_probs=57.3
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe----------------------------------------
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN---------------------------------------- 73 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd---------------------------------------- 73 (461)
.+.+++.|+.+.|++|+++.+++..+.+. +++.+..+-
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 35789999999999999999888765543 222221110
Q ss_pred ------cC----CchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHH
Q psy17502 74 ------AD----EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVAL 118 (461)
Q Consensus 74 ------~~----~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~ 118 (461)
|. ++..+++++||+++|++++-...+.+....|..+.++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 00 1123777899999999999863335556789998888887663
No 296
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.09 E-value=0.0029 Score=55.64 Aligned_cols=85 Identities=22% Similarity=0.233 Sum_probs=59.2
Q ss_pred eEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc---------------------------hhhHhhcCCC
Q psy17502 36 VWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE---------------------------KSLSSSHGVT 87 (461)
Q Consensus 36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~---------------------------~~l~~~~~i~ 87 (461)
.+|+.|++.||+.|....+.+.++++++++ .+.++.|+++.. ..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 556688899999999999999999999965 377777776641 2467788875
Q ss_pred ----C----ccEEEEEc-CCCCCccccC----CcchhHHHHHHHHH
Q psy17502 88 ----G----FPTVKIFS-DKRNPTPYQG----ARTADAIIDVALEA 120 (461)
Q Consensus 88 ----~----~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~~ 120 (461)
+ .|+.+++. +|.....+.+ .++.+++...+...
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 34577776 5533323222 45677787777553
No 297
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.07 E-value=0.0044 Score=48.81 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=63.9
Q ss_pred hcCCCeEEEEEeCC----CChhhhhhhHHHHHHHHHhcCceEEEEEeCcc--cHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502 153 YNSDDIWLVEFFAP----WCGHCKNLEPHWEKAASELEGKVKLGAVDATV--HQRIAGEFNIRGYPTIKFFSPGSRSASD 226 (461)
Q Consensus 153 ~~~~~~~~v~f~~~----~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~--~~~l~~~~~i~~~P~i~~~~~~~~~~~~ 226 (461)
.++.+..+|+++++ ||..|+.... =.++.+.+..++.+...|++. ...++..+++.++|++.++...+.....
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 56788999999999 7888865531 112333444566666677653 4568899999999999998533211123
Q ss_pred cccccCCCCHHHHHHHHHh
Q psy17502 227 AQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 227 ~~~y~g~~~~~~i~~fi~~ 245 (461)
..+..|..+.+++...+..
T Consensus 93 v~~i~G~~~~~~ll~~L~~ 111 (116)
T cd02991 93 VGRLEGLIQPEDLINRLTF 111 (116)
T ss_pred EEEEeCCCCHHHHHHHHHH
Confidence 5567899999999887754
No 298
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.07 E-value=0.0027 Score=51.02 Aligned_cols=78 Identities=19% Similarity=0.386 Sum_probs=48.6
Q ss_pred EcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc---CcccccEEEEEc
Q psy17502 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF---NIRGYPTIKFFS 218 (461)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~---~i~~~P~i~~~~ 218 (461)
.++++..+.......+..++.|..+||+.|....|.+.++|+.. +.+.+-.+.-+.+.++.++| |....|+++++.
T Consensus 27 ~l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d 105 (129)
T PF14595_consen 27 QLSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLD 105 (129)
T ss_dssp H--HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEc
Confidence 35555555443345567888888999999999999999999875 46666655555677776665 566789999997
Q ss_pred CC
Q psy17502 219 PG 220 (461)
Q Consensus 219 ~~ 220 (461)
..
T Consensus 106 ~~ 107 (129)
T PF14595_consen 106 KD 107 (129)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 299
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.05 E-value=0.0033 Score=45.44 Aligned_cols=54 Identities=24% Similarity=0.415 Sum_probs=38.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhh-----cCcccccEEEEEcCC
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE-----FNIRGYPTIKFFSPG 220 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~-----~~i~~~P~i~~~~~~ 220 (461)
++.|+++||++|+.+.+.+.+.. +.+-.+|.+.+...... +++.+.|++ ++.+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC
Confidence 56899999999999888776543 34456777666555544 378889997 45554
No 300
>KOG3414|consensus
Probab=97.03 E-value=0.0038 Score=48.15 Aligned_cols=68 Identities=15% Similarity=0.301 Sum_probs=60.9
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN 100 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~ 100 (461)
..+.++|.|...|.+.|-++...+.++++.+.+=..+..||.++-+++.+-|++...|++++|-+++.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 55699999999999999999999999999998877888899999999999999999999888865543
No 301
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.02 E-value=0.0045 Score=48.57 Aligned_cols=67 Identities=25% Similarity=0.471 Sum_probs=46.3
Q ss_pred cCCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh-------hhh--hcCcccccEEEEE
Q psy17502 154 NSDDIWLVEFFA-------PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR-------IAG--EFNIRGYPTIKFF 217 (461)
Q Consensus 154 ~~~~~~~v~f~~-------~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~-------l~~--~~~i~~~P~i~~~ 217 (461)
.++.+.+|+|++ +||+.|....|...++-....+...|+.+.+...+. ... +++++++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 355788899985 499999999999999888776678888776543222 233 5899999999999
Q ss_pred cCC
Q psy17502 218 SPG 220 (461)
Q Consensus 218 ~~~ 220 (461)
..+
T Consensus 97 ~~~ 99 (119)
T PF06110_consen 97 ETG 99 (119)
T ss_dssp TSS
T ss_pred CCC
Confidence 865
No 302
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.02 E-value=0.0038 Score=56.17 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=66.7
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---------cHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---------HQRIAGEFNIRGYPTIKFFSPGSRSASD 226 (461)
Q Consensus 156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---------~~~l~~~~~i~~~P~i~~~~~~~~~~~~ 226 (461)
++..++.||.+.|+.|..+.+....+++.+.=.+..+.+|..- +..+++++|+..+|++++....++ ..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~--~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ--KM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC--cE
Confidence 4589999999999999999999999999996445555555431 245789999999999999987743 11
Q ss_pred cccccCCCCHHHHHHHHHh
Q psy17502 227 AQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 227 ~~~y~g~~~~~~i~~fi~~ 245 (461)
...=.|-.+.++|.+-|..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 228 SPLAYGFISQDELKERILN 246 (256)
T ss_pred EEEeeccCCHHHHHHHHHH
Confidence 2223588899988766644
No 303
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.00 E-value=0.0024 Score=45.65 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=39.6
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc---CCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH---GVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~P~l~~ 94 (461)
+..|+.++|++|++....+.+ ..+.+-.+|.++++...+.+ |...+|++++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 357889999999998887764 23778888998877655554 8889999866
No 304
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0083 Score=48.34 Aligned_cols=87 Identities=17% Similarity=0.336 Sum_probs=62.7
Q ss_pred hhcCCCeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCcc----------------cHhhhhhcCccccc
Q psy17502 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWE---KAASELEGKVKLGAVDATV----------------HQRIAGEFNIRGYP 212 (461)
Q Consensus 152 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~i~f~~v~~~~----------------~~~l~~~~~i~~~P 212 (461)
+...++..++.|-++.|..|..+..... ++-+.+.+++.+..++++. .++|++.|++++.|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 3456788999999999999998866433 3455566667777766421 34799999999999
Q ss_pred EEEEEcCCCCCCcCcccccCCCCHHHHHH
Q psy17502 213 TIKFFSPGSRSASDAQEYNGGRTSQDIVT 241 (461)
Q Consensus 213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~ 241 (461)
++++|...++ ......|-...+++..
T Consensus 118 tfvFfdk~Gk---~Il~lPGY~ppe~Fl~ 143 (182)
T COG2143 118 TFVFFDKTGK---TILELPGYMPPEQFLA 143 (182)
T ss_pred eEEEEcCCCC---EEEecCCCCCHHHHHH
Confidence 9999987643 3444567777776443
No 305
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.96 E-value=0.00069 Score=56.61 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred CccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-|+|.|+|.||+ |.+-.|.+.+|+++|++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~ 52 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKD 52 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC
Confidence 68899999999999 99999999999999864
No 306
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.95 E-value=0.0026 Score=45.06 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=38.7
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 94 (461)
++.|+++||++|+.+...+.+.. +.+..+|...+.+ +.+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 57899999999999988877553 6677888877654 344457788998754
No 307
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.90 E-value=0.0058 Score=54.67 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=66.1
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---------cHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---------HQRIAGEFNIRGYPTIKFFSPGSRSASD 226 (461)
Q Consensus 156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---------~~~l~~~~~i~~~P~i~~~~~~~~~~~~ 226 (461)
++..+++||.+.|++|..+.|+...+++.+.=.+..+.+|..- +...+.++|+..+|++++....++ ..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~--~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSG--SV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCC--cE
Confidence 4578999999999999999999999999996455556665422 334667899999999999987743 11
Q ss_pred cccccCCCCHHHHHHHHHh
Q psy17502 227 AQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 227 ~~~y~g~~~~~~i~~fi~~ 245 (461)
...-.|..+.++|.+-+..
T Consensus 221 ~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred EEEeeccCCHHHHHHHHHH
Confidence 2223588899888766543
No 308
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.89 E-value=0.0033 Score=45.86 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=41.2
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc---hhhHhhcCCCCccEEEE
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE---KSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~P~l~~ 94 (461)
.+.-++.|+.+||++|++....|.+. .+.+-.+|++++ ..+.+..|...+|.+++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 34458899999999999988887632 266777887765 34555678999999965
No 309
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.89 E-value=0.0044 Score=52.87 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHH-hcC-ceEE-EEEeC-----------------------------cccHhhh
Q psy17502 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASE-LEG-KVKL-GAVDA-----------------------------TVHQRIA 203 (461)
Q Consensus 156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~-~~~-~i~f-~~v~~-----------------------------~~~~~l~ 203 (461)
+++.+|.|+|.||++|+...|.+.+++.. +.- +++- .-|+. +....+.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 78999999999999999999999998642 210 0000 22221 1233456
Q ss_pred hhcCcccccEE-EEEcCCCCCCcCcccccCCCCHHHHHHH
Q psy17502 204 GEFNIRGYPTI-KFFSPGSRSASDAQEYNGGRTSQDIVTW 242 (461)
Q Consensus 204 ~~~~i~~~P~i-~~~~~~~~~~~~~~~y~g~~~~~~i~~f 242 (461)
..|++.+.|+- +++...+ .....+.|..+.+++.+.
T Consensus 139 ~~~gv~~~P~T~fVIDk~G---kVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTG---KVKFVKEGALSDSDIQTV 175 (184)
T ss_pred HhcCCCCCCceEEEECCCC---cEEEEEeCCCCHHHHHHH
Confidence 68888888766 5666543 245667898888877663
No 310
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.89 E-value=0.0057 Score=55.39 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------------chhhHh
Q psy17502 33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------------EKSLSS 82 (461)
Q Consensus 33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 82 (461)
.++.+++.|| +.||+.|....+.|.+.++++++ .+.+..|.++. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 3456777777 89999999999999999999864 36666666553 124778
Q ss_pred hcCCC-----CccEEEEEc-CCCCCccc----cCCcchhHHHHHHHHH
Q psy17502 83 SHGVT-----GFPTVKIFS-DKRNPTPY----QGARTADAIIDVALEA 120 (461)
Q Consensus 83 ~~~i~-----~~P~l~~~~-~g~~~~~y----~g~~~~~~i~~~i~~~ 120 (461)
.||+. ..|+.+++. +|.....+ ...++.++++..+...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 88885 479999997 55433322 3456788888777543
No 311
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.88 E-value=0.0068 Score=48.45 Aligned_cols=44 Identities=14% Similarity=0.371 Sum_probs=37.3
Q ss_pred CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc
Q psy17502 155 SDDIWLVEFFAP-WCGHCKNLEPHWEKAASELEG-KVKLGAVDATV 198 (461)
Q Consensus 155 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~ 198 (461)
.+++++|.||+. ||+.|....+.+.++...++. .+.+..|..+.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~ 69 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD 69 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence 458999999998 999999999999999998875 58887776543
No 312
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.82 E-value=0.013 Score=45.28 Aligned_cols=89 Identities=17% Similarity=0.318 Sum_probs=66.0
Q ss_pred ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC-----
Q psy17502 23 TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD----- 97 (461)
Q Consensus 23 ~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~----- 97 (461)
.++..+ ++...+.++|-|+..--. .....|.++|..+++.+.|+... +.++.+++++ .|++++|+.
T Consensus 8 ~~~l~~-f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 8 EAEFEK-FLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred HHHHHH-HhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhc
Confidence 345666 677788888888766444 45678999999998888887665 4577888888 788888831
Q ss_pred --CCCCccccCCcchhHHHHHHHHH
Q psy17502 98 --KRNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 98 --g~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
......|.|..+.+.|.+|+...
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 12335699988899999999753
No 313
>PLN02412 probable glutathione peroxidase
Probab=96.81 E-value=0.0013 Score=55.92 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=29.7
Q ss_pred CccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-|||.|+|+||+.|++-.|.+.+|.++|++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~ 60 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKE 60 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999999874
No 314
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.79 E-value=0.0039 Score=63.36 Aligned_cols=99 Identities=13% Similarity=0.200 Sum_probs=78.4
Q ss_pred CCceEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502 16 SDVIKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 94 (461)
..-..|+++.-+. +.+ .++.-+-.|+++.|++|......+.+++.... .|..-.+|..+.++++++|++.++|++++
T Consensus 99 ~~~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 99 GHGPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL 176 (515)
T ss_pred CCCCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE
Confidence 3445666766665 433 44567999999999999999999988887754 58888899999999999999999999987
Q ss_pred EcCCCCCccccCCcchhHHHHHHHHH
Q psy17502 95 FSDKRNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 95 ~~~g~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
+|+ ..+.|..+.+++.+.+.+.
T Consensus 177 --~~~--~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 177 --NGE--EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred --CCc--EEEecCCCHHHHHHHHhhc
Confidence 443 3478888888887777654
No 315
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.76 E-value=0.0066 Score=53.68 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=61.6
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc---------------------------hhhHhhc
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE---------------------------KSLSSSH 84 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~---------------------------~~l~~~~ 84 (461)
.+..+|+.|++.||+.|....+.|.+++.++.. .+.++.|+++.. ..+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 333457788899999999999999999999864 377777776642 2367778
Q ss_pred CCC-------CccEEEEEc-CCCCCcc--c--cCCcchhHHHHHHHH
Q psy17502 85 GVT-------GFPTVKIFS-DKRNPTP--Y--QGARTADAIIDVALE 119 (461)
Q Consensus 85 ~i~-------~~P~l~~~~-~g~~~~~--y--~g~~~~~~i~~~i~~ 119 (461)
|+. ..|+++++. +|..... | ...++.+++...+..
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 873 579999997 5533222 2 224677888887764
No 316
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.74 E-value=0.0059 Score=46.16 Aligned_cols=59 Identities=36% Similarity=0.469 Sum_probs=44.9
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec--CCc------------------------------hhhHhhcC
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA--DEE------------------------------KSLSSSHG 85 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~--~~~------------------------------~~l~~~~~ 85 (461)
++.|+++.|++|..+.+.+.++.....+++.+..+.. ... ..++++.|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999866666665555443 221 23567789
Q ss_pred CCCccEEEEEc
Q psy17502 86 VTGFPTVKIFS 96 (461)
Q Consensus 86 i~~~P~l~~~~ 96 (461)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999865
No 317
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.73 E-value=0.0053 Score=46.89 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=38.8
Q ss_pred HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh-------hHhhcCCCCccEEEE
Q psy17502 30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS-------LSSSHGVTGFPTVKI 94 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~-------l~~~~~i~~~P~l~~ 94 (461)
.+++++ ++.|..+||++|+++...|.+. .+.+..+|.++.++ +.+..|.+.+|.+++
T Consensus 4 ~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 4 MVSEKA--VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred hhccCC--EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 455555 7789999999999988766543 24555677765533 333446789999844
No 318
>PRK13189 peroxiredoxin; Provisional
Probab=96.70 E-value=0.0077 Score=53.60 Aligned_cols=85 Identities=12% Similarity=0.102 Sum_probs=58.9
Q ss_pred eEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc---------------------------hhhHhhcCCC
Q psy17502 36 VWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE---------------------------KSLSSSHGVT 87 (461)
Q Consensus 36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~---------------------------~~l~~~~~i~ 87 (461)
.+|+.|++.||+.|....++|.+.+++++. .+.++.|+++.. ..+++.||+.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 555677799999999999999999999864 366666665521 2467778865
Q ss_pred -------CccEEEEEc-CCCCCcc----ccCCcchhHHHHHHHHH
Q psy17502 88 -------GFPTVKIFS-DKRNPTP----YQGARTADAIIDVALEA 120 (461)
Q Consensus 88 -------~~P~l~~~~-~g~~~~~----y~g~~~~~~i~~~i~~~ 120 (461)
..|+.+++. +|..... ....++.+++...+...
T Consensus 118 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 118 SPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred ccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 468888887 5532212 23456778888877654
No 319
>KOG0911|consensus
Probab=96.69 E-value=0.015 Score=50.24 Aligned_cols=77 Identities=16% Similarity=0.335 Sum_probs=65.4
Q ss_pred hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC
Q psy17502 153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG 232 (461)
Q Consensus 153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g 232 (461)
.......++.|+++||..|..+...+..+++.. ..+.|+.++.+..++++..+.+...|..+.+..+ ....+..|
T Consensus 14 ~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~----~~v~~l~~ 88 (227)
T KOG0911|consen 14 DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG----EKVDRLSG 88 (227)
T ss_pred HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecc----hhhhhhhc
Confidence 346778899999999999999999999999988 7899999999999999999999999999998766 23444455
Q ss_pred CC
Q psy17502 233 GR 234 (461)
Q Consensus 233 ~~ 234 (461)
..
T Consensus 89 ~~ 90 (227)
T KOG0911|consen 89 AD 90 (227)
T ss_pred cC
Confidence 43
No 320
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.67 E-value=0.0019 Score=54.09 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=29.3
Q ss_pred CccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-|||.|.|+||+.|++-.|.+.+++++|++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~ 53 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGP 53 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh
Confidence 67799999999999999999999999999864
No 321
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.62 E-value=0.0087 Score=43.01 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=37.6
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhH----hhcCCC-CccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS----SSHGVT-GFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~P~l~~ 94 (461)
++.|+.+||++|+++...|.+. .+.+-.+|++.+++.. +..+.. .+|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5788999999999988777642 3677788888765443 345766 8998854
No 322
>PHA03050 glutaredoxin; Provisional
Probab=96.61 E-value=0.0065 Score=47.16 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=40.9
Q ss_pred HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC---c----hhhHhhcCCCCccEEEE
Q psy17502 30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE---E----KSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~---~----~~l~~~~~i~~~P~l~~ 94 (461)
.+++++ ++.|..+||++|++....|.+..-... .+-.+|.++ . ..+.+.-|.+.+|++++
T Consensus 9 ~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 9 RLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 555655 788999999999998887766532211 355556654 2 23555668889999955
No 323
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.59 E-value=0.0094 Score=42.65 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=39.1
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 94 (461)
++.|+.+||++|+++...+++. .+.+-.+|+.+++. +.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6788999999999988777742 36777888887654 555567788999855
No 324
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.57 E-value=0.011 Score=43.29 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=50.3
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhH---hhcCCCCccEEEEEcCCCCCccccCCcchhHHH
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS---SSHGVTGFPTVKIFSDKRNPTPYQGARTADAII 114 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~ 114 (461)
++.|+.+||++|++....|.+ ..|.|-.+|++++++.. +..|...+|++++ ++. .-+....+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~~~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----SWSGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----EEecCCHHHHH
Confidence 678899999999998877743 23788889998877533 3457788999965 321 23456677777
Q ss_pred HHHHHH
Q psy17502 115 DVALEA 120 (461)
Q Consensus 115 ~~i~~~ 120 (461)
+.+..+
T Consensus 71 ~~~~~~ 76 (81)
T PRK10329 71 RLHPAP 76 (81)
T ss_pred HHHHhh
Confidence 776654
No 325
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.53 E-value=0.0069 Score=44.10 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=37.3
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhh----HhhcCCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL----SSSHGVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~P~l~~ 94 (461)
++.|+.+||++|++....+.+. .+.+-.+|++.+++. .+..|...+|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3678899999999998888743 256677777766544 34457888999854
No 326
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.52 E-value=0.021 Score=44.88 Aligned_cols=98 Identities=19% Similarity=0.293 Sum_probs=69.2
Q ss_pred hhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCcc-EEEEEcCCCCC--
Q psy17502 26 FDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFP-TVKIFSDKRNP-- 101 (461)
Q Consensus 26 f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P-~l~~~~~g~~~-- 101 (461)
-++.++ ++++.+++.|...|-+.|.++-..+.++|++.++-..++.||.++-+++.+-|.+. -| |+++|.+++..
T Consensus 11 VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~v 89 (133)
T PF02966_consen 11 VDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMMV 89 (133)
T ss_dssp HHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEEE
T ss_pred HHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEEE
Confidence 344333 46679999999999999999999999999999887899999999999999999999 77 46555332221
Q ss_pred -------ccccCCc-chhHHHHHHHHHHhhh
Q psy17502 102 -------TPYQGAR-TADAIIDVALEAIRQK 124 (461)
Q Consensus 102 -------~~y~g~~-~~~~i~~~i~~~~~~~ 124 (461)
.+..+.. +.++++.-+.-..+..
T Consensus 90 D~GtgnnnKin~~~~~kqe~iDiie~iyrga 120 (133)
T PF02966_consen 90 DFGTGNNNKINWAFEDKQEFIDIIETIYRGA 120 (133)
T ss_dssp ESSSSSSSSBCS--SCHHHHHHHHHHHHHHH
T ss_pred EecCCCccEEEEEcCcHHHHHHHHHHHHHHh
Confidence 2344443 3566666665554444
No 327
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.52 E-value=0.012 Score=43.03 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=58.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHH
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI 239 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i 239 (461)
++.|..+.|.-|......+.+++... .+.+-.+|++.++++..+|+.. .|.+.+-....- .......+.++.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~~-IPVl~~~~~~~~--~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGYR-IPVLHIDGIRQF--KEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCTS-TSEEEETT-GGG--CTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcCC-CCEEEEcCcccc--cccceeCCCCCHHHH
Confidence 57888999999998888888765443 4888899999999999999975 898766442210 113445677899999
Q ss_pred HHHHH
Q psy17502 240 VTWAL 244 (461)
Q Consensus 240 ~~fi~ 244 (461)
.+|+.
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99874
No 328
>KOG1672|consensus
Probab=96.43 E-value=0.0084 Score=50.27 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=66.9
Q ss_pred eeEc-ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502 140 VVEL-TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS 218 (461)
Q Consensus 140 v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~ 218 (461)
...+ ++.+|-+... ...-+++-||-+.-..|+-+-..++.+|+.+- ..+|.+|++...+=++.+++|+-.|++.+|+
T Consensus 68 y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k 145 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFK 145 (211)
T ss_pred EEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEE
Confidence 4444 5777777654 45668899999888889999999999998874 6899999999999999999999999999999
Q ss_pred CC
Q psy17502 219 PG 220 (461)
Q Consensus 219 ~~ 220 (461)
+|
T Consensus 146 ~g 147 (211)
T KOG1672|consen 146 NG 147 (211)
T ss_pred cC
Confidence 88
No 329
>KOG3425|consensus
Probab=96.40 E-value=0.019 Score=44.11 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=50.3
Q ss_pred CCCeEEEEEeC--------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-------hhhhhcCc-ccccEEEEEc
Q psy17502 155 SDDIWLVEFFA--------PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-------RIAGEFNI-RGYPTIKFFS 218 (461)
Q Consensus 155 ~~~~~~v~f~~--------~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-------~l~~~~~i-~~~P~i~~~~ 218 (461)
+++..+|+|++ +||+.|....|.+.++-+....++.|.++++..-+ ......++ ...||++=+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 34558899985 49999999999999999988788999999875432 34445565 7789988887
Q ss_pred C
Q psy17502 219 P 219 (461)
Q Consensus 219 ~ 219 (461)
.
T Consensus 104 ~ 104 (128)
T KOG3425|consen 104 R 104 (128)
T ss_pred C
Confidence 4
No 330
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.40 E-value=0.0099 Score=44.01 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=52.8
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc----HhhhhhcC--cccccEEEEEcCCCCCCcCcccccC
Q psy17502 159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH----QRIAGEFN--IRGYPTIKFFSPGSRSASDAQEYNG 232 (461)
Q Consensus 159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~----~~l~~~~~--i~~~P~i~~~~~~~~~~~~~~~y~g 232 (461)
-++.|..+||++|......+++++..+ ..+.+..+|.+.+ .++....+ ..++|+|++ +| +. -|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g-----~~---ig 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQ-----KH---IG 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CC-----EE---Ec
Confidence 367889999999999999999998765 4677777777653 24544444 467899764 44 11 12
Q ss_pred CCCHHHHHHHHHhhc
Q psy17502 233 GRTSQDIVTWALNKY 247 (461)
Q Consensus 233 ~~~~~~i~~fi~~~~ 247 (461)
..++|.+++..++
T Consensus 71 --g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 --GCTDFEAYVKENL 83 (85)
T ss_pred --CHHHHHHHHHHhc
Confidence 3477888777654
No 331
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.36 E-value=0.016 Score=41.33 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=37.4
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh---hHhhcCCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS---LSSSHGVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~P~l~~ 94 (461)
+++|..+||+.|.+....+.+. .+.+-.+|.+++.. +.+..|...+|.+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi 56 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE
Confidence 6889999999999988777642 36677778766542 334458889999843
No 332
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.34 E-value=0.0088 Score=45.82 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=56.9
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhh---hHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNL---EPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF 216 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~---~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~ 216 (461)
...++..+++.++ ..... .|.|++..|..+.+. .-++-++.+.+.+.+..+.+.-..+.++..+||+..+|++++
T Consensus 11 ~~~vd~~~ld~~l-~~~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 11 WPRVDADTLDAFL-AAPGD-AVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp EEEE-CCCHHHHH-HCCSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CeeechhhHHHHH-hCCCc-EEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEE
Confidence 5677888888876 44444 445555544444444 337777888888888888887667889999999999999999
Q ss_pred EcCC
Q psy17502 217 FSPG 220 (461)
Q Consensus 217 ~~~~ 220 (461)
++.|
T Consensus 89 ~R~g 92 (107)
T PF07449_consen 89 FRDG 92 (107)
T ss_dssp EETT
T ss_pred EECC
Confidence 9998
No 333
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.31 E-value=0.021 Score=39.00 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=37.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhh----hhcCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA----GEFNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~----~~~~i~~~P~i~~ 216 (461)
++.|..++|++|......+++ ..+.+..+|.+.+++.. +..|..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 467889999999988877744 34777778877664433 3348889999886
No 334
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.25 E-value=0.031 Score=48.96 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=57.8
Q ss_pred CCeEEEEEEC-CCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHhh
Q psy17502 34 DEVWIVEYYA-PWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSSS 83 (461)
Q Consensus 34 ~~~~lv~f~~-~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~~ 83 (461)
++.++|.||+ .||+.|....+++.++++++.. .+.++.|+++.. .++++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 5688889995 7899999989999999999875 377777776532 136677
Q ss_pred cCCC------CccEEEEEc-CCCCCccc----cCCcchhHHHHHHHH
Q psy17502 84 HGVT------GFPTVKIFS-DKRNPTPY----QGARTADAIIDVALE 119 (461)
Q Consensus 84 ~~i~------~~P~l~~~~-~g~~~~~y----~g~~~~~~i~~~i~~ 119 (461)
||+. .+|+.+++. +|.....+ ...++.++++..+..
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 7874 368888887 44322221 223455566665543
No 335
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.25 E-value=0.0051 Score=50.60 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=29.8
Q ss_pred CCccEEEEEecCcchh-hhhchhHHHHHHHHHhh
Q psy17502 427 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALKV 459 (461)
Q Consensus 427 ~~kdvlv~fyapwC~~-Ck~l~p~~~~la~~~k~ 459 (461)
.+|-++|.|+++||+. |.+..|.+.++.+.|++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 4688999999999997 99999999999998864
No 336
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.25 E-value=0.011 Score=49.05 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=53.3
Q ss_pred eEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhH-HHHH--HHHHhcCceEEEEEeCcccHhhhhhc--------Ccc
Q psy17502 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP-HWEK--AASELEGKVKLGAVDATVHQRIAGEF--------NIR 209 (461)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~~~--~a~~~~~~i~f~~v~~~~~~~l~~~~--------~i~ 209 (461)
....++.++.. .+.+++++|.++.+||..|..+.. .|.. +|..+...+.-+.+|.++.+++...| |..
T Consensus 23 ~~w~~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~g 101 (163)
T PF03190_consen 23 QPWGEEALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSG 101 (163)
T ss_dssp B-SSHHHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS--
T ss_pred ccCCHHHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCC
Confidence 34456667664 577899999999999999998865 5544 77777777788889998888887777 788
Q ss_pred cccEEEEEcCC
Q psy17502 210 GYPTIKFFSPG 220 (461)
Q Consensus 210 ~~P~i~~~~~~ 220 (461)
++|+.++..+.
T Consensus 102 GwPl~vfltPd 112 (163)
T PF03190_consen 102 GWPLTVFLTPD 112 (163)
T ss_dssp -SSEEEEE-TT
T ss_pred CCCceEEECCC
Confidence 99999988876
No 337
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.23 E-value=0.024 Score=46.43 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=32.3
Q ss_pred CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC
Q psy17502 156 DDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDA 196 (461)
Q Consensus 156 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~ 196 (461)
+++++|.|+ +.||+.|....+.+.+++..+.+ .+.+..|..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~ 65 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSP 65 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 578888888 58999999999999999888863 466666543
No 338
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.22 E-value=0.029 Score=49.62 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=59.2
Q ss_pred eEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc---------------------------hhhHhhcCCC
Q psy17502 36 VWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE---------------------------KSLSSSHGVT 87 (461)
Q Consensus 36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~---------------------------~~l~~~~~i~ 87 (461)
.+|+.|++.||+.|....+.|.+.+.+++. .+.++.|+++.. .+++++||+.
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~ 115 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMI 115 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence 455577899999999999999999999864 366777766532 1356677763
Q ss_pred -------CccEEEEEc-CCCCCcc--c--cCCcchhHHHHHHHHH
Q psy17502 88 -------GFPTVKIFS-DKRNPTP--Y--QGARTADAIIDVALEA 120 (461)
Q Consensus 88 -------~~P~l~~~~-~g~~~~~--y--~g~~~~~~i~~~i~~~ 120 (461)
..|+.+++. +|..... | ...++.++++..+...
T Consensus 116 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 116 HAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred ccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 368888887 4432222 1 2346888888888654
No 339
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.04 E-value=0.022 Score=48.66 Aligned_cols=36 Identities=19% Similarity=0.424 Sum_probs=27.1
Q ss_pred EEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC
Q psy17502 40 EYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75 (461)
Q Consensus 40 ~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~ 75 (461)
+|+.|.|+.|-.+.|.+.++..++++++.+-.|=..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEcc
Confidence 699999999999999999999999987666555443
No 340
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.028 Score=40.97 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=37.3
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-----hhHhhc-CCCCccEEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-----SLSSSH-GVTGFPTVKIF 95 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~P~l~~~ 95 (461)
++.|..++|++|++....+.+ ..+.+..+|.+.+. +..++. |.+.+|.|++=
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~ 60 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG 60 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC
Confidence 678899999999998776662 23667777766554 334444 78999998873
No 341
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.81 E-value=0.012 Score=48.80 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=26.6
Q ss_pred CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~ 459 (461)
++.++|.|| +.||+.|++-.|.+.++.+.+++
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~ 55 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDA 55 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh
Confidence 355666666 99999999999999999998853
No 342
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.81 E-value=0.044 Score=41.68 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=39.7
Q ss_pred HhcCCCeEEEEEE---CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502 30 VIKSDEVWIVEYY---APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI 94 (461)
Q Consensus 30 ~~~~~~~~lv~f~---~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 94 (461)
+++++++++..=. +|||++|++....|.+. .+.+..+|..++++ +.+..|...+|.+++
T Consensus 8 ~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 8 QIKENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HhccCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 5666654333222 38999999988777653 25677888876654 444557788999865
No 343
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.78 E-value=0.13 Score=39.89 Aligned_cols=96 Identities=15% Similarity=0.288 Sum_probs=63.0
Q ss_pred ceeecCHHHHHHHhcCC-CeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCC
Q psy17502 256 IKQIVSEATFKEACEDH-PLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGY 334 (461)
Q Consensus 256 v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~ 334 (461)
+.++++...+..+.... ..++++++... .....+.+.++|..+|+.. .|.... ...+...+++. .
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~-------~~~~~~~F~~vA~~~Rdd~-~F~~t~---~~~~~~~~~~~---~ 67 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGE-------EDPAYQLYQDAANSLREDY-KFHHTF---DSEIFKSLKVS---P 67 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCC-------CCHHHHHHHHHHHhcccCC-EEEEEC---hHHHHHhcCCC---C
Confidence 45567777788777665 78888886431 1134567889999998875 454333 23566777775 5
Q ss_pred ccEEEEccCc--ccc----ccCCCC-CCHHH-HHHHHHH
Q psy17502 335 PAMAVLNAKK--MKY----SLLKGP-FSYDG-INEFLRD 365 (461)
Q Consensus 335 P~l~i~~~~~--~k~----~~~~~~-~~~~~-i~~Fi~~ 365 (461)
|.++++.|.. .|| ..|.+. .+.++ |.+|++.
T Consensus 68 ~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 68 GQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 7888887664 233 334555 66655 9999975
No 344
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.75 E-value=0.032 Score=39.47 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=35.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc----CcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF----NIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~----~i~~~P~i~~ 216 (461)
++.|+++||++|..+...+.+. .+.+..++.+.+....+.+ +..++|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5678999999999877766552 3556666666554443333 5778999876
No 345
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.64 E-value=0.042 Score=46.60 Aligned_cols=53 Identities=17% Similarity=0.362 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---cHhhhhhcCcc
Q psy17502 156 DDIWLVEFFAPW-CGHCKNLEPHWEKAASELEGKVKLGAVDATV---HQRIAGEFNIR 209 (461)
Q Consensus 156 ~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---~~~l~~~~~i~ 209 (461)
+++++|.||+.| |+.|....+.+.++++.+. .+.+..+..+. ..++++++++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 568999999999 9999999999999999884 67777776553 33456666654
No 346
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.59 E-value=0.012 Score=50.79 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=27.0
Q ss_pred CccE-EEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVW-IVEYYAPWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdv-lv~fyapwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-| |+.+.|.||+.|++-.|.++++.++|++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~ 72 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS 72 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 5644 5566899999999999999999999874
No 347
>KOG3170|consensus
Probab=95.58 E-value=0.056 Score=45.60 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=64.9
Q ss_pred CCceEcCccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502 16 SDVIKLTTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93 (461)
Q Consensus 16 ~~v~~l~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 93 (461)
..|..++..+|.+.+.+.+ -.|+|..|...-+.|+-+...++++|.++.. +.|+++-.+..- ..|-=...|||+
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~cI---pNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTCI---PNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccccc---CCCcccCCCeEE
Confidence 4588999999998775433 3788899999999999999999999999875 888887765442 234446789999
Q ss_pred EEcCCCCCc
Q psy17502 94 IFSDKRNPT 102 (461)
Q Consensus 94 ~~~~g~~~~ 102 (461)
+|..|....
T Consensus 167 VY~~G~lk~ 175 (240)
T KOG3170|consen 167 VYHHGALKK 175 (240)
T ss_pred EeecchHHh
Confidence 999775443
No 348
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.58 E-value=0.03 Score=40.93 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=37.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc-H----hhhhhcCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH-Q----RIAGEFNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~-~----~l~~~~~i~~~P~i~~ 216 (461)
++.|+++||++|..+...+.++.. .+.+..++...+ . .+.+..|..++|.+++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 577889999999999988888654 455666665433 2 3445568888998743
No 349
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.52 E-value=0.049 Score=44.80 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=41.7
Q ss_pred CCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCccc---HhhhhhcCccccc
Q psy17502 156 DDIWLVEFFAPW-CGHCKNLEPHWEKAASELEGKVKLGAVDATVH---QRIAGEFNIRGYP 212 (461)
Q Consensus 156 ~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~---~~l~~~~~i~~~P 212 (461)
++++++.||+.| |++|....+.+.++++.++ .+.+..|..+.. .++.+++++..+|
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 568999999988 6999999999999999885 677877776543 3344555554444
No 350
>PRK10638 glutaredoxin 3; Provisional
Probab=95.52 E-value=0.047 Score=40.12 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=37.9
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 94 (461)
++.|..+||++|++....+.+. .+.+..+|++.+++ +.+..|...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5688899999999988777643 26677788876653 445567888998854
No 351
>KOG3414|consensus
Probab=95.50 E-value=0.098 Score=40.57 Aligned_cols=75 Identities=13% Similarity=0.280 Sum_probs=62.7
Q ss_pred hhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502 146 SNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220 (461)
Q Consensus 146 ~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~ 220 (461)
.+.++.+. ...+.+++-|-.+|.+.|-.+-..+.++|..+.+-..++.+|.++-+++-+-|++...|++++|-++
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 34444443 3467888899999999999999999999999988788888999988899999999999999888765
No 352
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.47 E-value=0.016 Score=47.99 Aligned_cols=31 Identities=3% Similarity=0.094 Sum_probs=27.2
Q ss_pred ccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502 429 EVWIVEYY-APWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 429 kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~ 459 (461)
|.++|.|+ ++||..|.+-.|.+.+++++|++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~ 60 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA 60 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh
Confidence 67777777 99999999999999999998863
No 353
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.41 E-value=0.04 Score=40.81 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=49.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc----cHhhhhhcCc--ccccEEEEEcCCCCCCcCcccccCC
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV----HQRIAGEFNI--RGYPTIKFFSPGSRSASDAQEYNGG 233 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~----~~~l~~~~~i--~~~P~i~~~~~~~~~~~~~~~y~g~ 233 (461)
++.|..+||++|......+.++.... ..+.+..+|.+. ..++....+- .++|+|++ ++ . +-|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g-----~---~ig- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DE-----K---HVG- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CC-----E---Eec-
Confidence 56788999999999998888876443 246676777653 2345555563 67899854 33 1 122
Q ss_pred CCHHHHHHHHHhhc
Q psy17502 234 RTSQDIVTWALNKY 247 (461)
Q Consensus 234 ~~~~~i~~fi~~~~ 247 (461)
..++|.+++.++.
T Consensus 70 -G~~dl~~~~~~~~ 82 (86)
T TIGR02183 70 -GCTDFEQLVKENF 82 (86)
T ss_pred -CHHHHHHHHHhcc
Confidence 2478888876643
No 354
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.38 E-value=0.061 Score=40.25 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=38.7
Q ss_pred HhcCCCeEEEEEE---CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502 30 VIKSDEVWIVEYY---APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI 94 (461)
Q Consensus 30 ~~~~~~~~lv~f~---~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 94 (461)
.+++++++++.=. .|||++|++....+.+. .+.+..+|...+++ +.+..|-..+|.+++
T Consensus 4 ~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 4 LIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred hhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 4566653333221 27999999988777654 26677788776654 344457888999854
No 355
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.35 E-value=0.018 Score=49.27 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=29.0
Q ss_pred CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-|+|.|| +.||.+|..-.|.+.++++.|++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~ 61 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK 61 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH
Confidence 578999999 89999999999999999999864
No 356
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.25 E-value=0.11 Score=43.33 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=32.5
Q ss_pred CCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc
Q psy17502 156 DDIWLVEFFAP-WCGHCKNLEPHWEKAASELEG-KVKLGAVDAT 197 (461)
Q Consensus 156 ~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~ 197 (461)
+++++|.|++. ||+.|....+.+.++++.+.+ .+.+..|..+
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46788889875 688899989999998888864 4777666554
No 357
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.08 E-value=0.14 Score=39.09 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=53.6
Q ss_pred Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH----hhhhhcCccc-ccEEEEE
Q psy17502 144 TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ----RIAGEFNIRG-YPTIKFF 217 (461)
Q Consensus 144 ~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~----~l~~~~~i~~-~P~i~~~ 217 (461)
+.+++++++.. .++++++.=.+..|+-+......|++.+....+.+.++.+|.-+++ .+++++||.- -|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 56677776543 3677777778899999989999999999888766999999886644 5688999873 5999999
Q ss_pred cCC
Q psy17502 218 SPG 220 (461)
Q Consensus 218 ~~~ 220 (461)
++|
T Consensus 86 ~~g 88 (105)
T PF11009_consen 86 KNG 88 (105)
T ss_dssp ETT
T ss_pred ECC
Confidence 998
No 358
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.04 E-value=0.16 Score=45.58 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=55.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEE----------------------------------------
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV---------------------------------------- 194 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v---------------------------------------- 194 (461)
+.+..++.|..+.|++|+.+.+.+.++.+ ..+.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 45678889999999999998887776532 11111111
Q ss_pred ----eCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502 195 ----DATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 195 ----~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
+...+.++++++||.+.|+++ +.+| . ...|..+.+.|.+++...
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G-----~--~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG-----T--LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC-----e--EeeCCCCHHHHHHHHHHc
Confidence 011233588899999999998 5555 2 347888999999998653
No 359
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.01 E-value=0.026 Score=48.91 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=29.0
Q ss_pred CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-|+|.|| +.||..|..-.|.+.++.+.|++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~ 63 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKK 63 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh
Confidence 678999999 99999999999999999998863
No 360
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.83 E-value=0.032 Score=45.61 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=28.8
Q ss_pred CCccEEEEEe-cCcchhhhhchhHHHHHHHHHh
Q psy17502 427 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALK 458 (461)
Q Consensus 427 ~~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k 458 (461)
.+|-++|.|+ +.||..|....|.+.+++++|+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~ 53 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA 53 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH
Confidence 4788899988 7999999999999999999885
No 361
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.80 E-value=0.1 Score=37.94 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=37.9
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc---HhhhhhcCcccccEEEE
Q psy17502 157 DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH---QRIAGEFNIRGYPTIKF 216 (461)
Q Consensus 157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~---~~l~~~~~i~~~P~i~~ 216 (461)
+..++.|..+||++|......+.+. .+.+-.+|++.+ .++....|...+|.+++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 3456788999999999988877642 355666666544 34445567788999864
No 362
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=94.65 E-value=0.093 Score=45.04 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=34.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT 197 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~ 197 (461)
.+++++|.|+|+||+.|.+ .+.+.++.+.+++ .+.+..+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 3589999999999999964 7899999999975 5777777663
No 363
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.63 E-value=0.092 Score=36.86 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=35.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhh----hhhcCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI----AGEFNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l----~~~~~i~~~P~i~~ 216 (461)
++.|.++||++|......+.+.. +.+..+|...+.+. .+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56788999999998888777643 56667777665443 33346667787644
No 364
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.62 E-value=0.099 Score=37.15 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=36.5
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc---CcccccEEEE
Q psy17502 161 VEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF---NIRGYPTIKF 216 (461)
Q Consensus 161 v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~---~i~~~P~i~~ 216 (461)
..|..++|+.|......+.+ ..+.|..+|++.+++..+.+ |..++|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 46778999999988877764 35677777877766555544 7777898766
No 365
>KOG3171|consensus
Probab=94.60 E-value=0.2 Score=42.85 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=76.3
Q ss_pred CCceEcCc-cchhHHHhcCC---CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccE
Q psy17502 16 SDVIKLTT-SNFDDKVIKSD---EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT 91 (461)
Q Consensus 16 ~~v~~l~~-~~f~~~~~~~~---~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~ 91 (461)
.-|+++++ +.|-+ .+... -..+|..|-+.-.-|..+...+.-+|.++.- +.|.++-.+ +....++|...++|+
T Consensus 138 ~~V~El~~gkqfld-~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss-~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 138 GFVYELETGKQFLD-TIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSS-NTGASDRFSLNVLPT 214 (273)
T ss_pred ceEEEeccchhHHH-HHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeec-cccchhhhcccCCce
Confidence 45777765 66777 55433 3688999999999999999999999988754 899988765 344578899999999
Q ss_pred EEEEcCCCCCccc-------cCCcchhHHHHHHHHH
Q psy17502 92 VKIFSDKRNPTPY-------QGARTADAIIDVALEA 120 (461)
Q Consensus 92 l~~~~~g~~~~~y-------~g~~~~~~i~~~i~~~ 120 (461)
|.+|++|..+..| -...-+.++..|++.+
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999998766443 2234455666666654
No 366
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.45 E-value=0.22 Score=43.49 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=50.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEE-----------------------------------------
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA----------------------------------------- 193 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~----------------------------------------- 193 (461)
+.+..++.|+.+.|++|+.+.+.+.+. .+.+.+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 357889999999999999988877641 11111111
Q ss_pred ----EeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 194 ----VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 194 ----v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
.+...+..+++++|+.+.|+++ +.+| . ...|..+.+.|.+|+
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G-----~--~~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADG-----R--VVPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCC-----e--EecCCCCHHHHHhhC
Confidence 1112234578899999999997 6655 1 256777777776653
No 367
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.31 E-value=0.075 Score=45.47 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=36.1
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~ 74 (461)
..++.++.|+.+.|++|+.+.+.+..+.+++.+++.+..+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 567899999999999999999999999998877777765554
No 368
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.18 E-value=0.44 Score=37.69 Aligned_cols=72 Identities=15% Similarity=0.287 Sum_probs=56.6
Q ss_pred hhhhhhhh-hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccE-EEEE
Q psy17502 145 DSNFEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT-IKFF 217 (461)
Q Consensus 145 ~~~~~~~~-~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~-i~~~ 217 (461)
....++.+ .+.++++++-|-.+|.+.|-.+-+.+.++|...+.-..++.+|.++-+++.+-|.+. -|. +.+|
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 34444444 345788999999999999999999999999999988999999999988888889998 575 4444
No 369
>PRK10824 glutaredoxin-4; Provisional
Probab=94.02 E-value=0.17 Score=39.60 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=37.7
Q ss_pred HhcCCCeEEEEEEC---CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhH----hhcCCCCccEEEE
Q psy17502 30 VIKSDEVWIVEYYA---PWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS----SSHGVTGFPTVKI 94 (461)
Q Consensus 30 ~~~~~~~~lv~f~~---~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~P~l~~ 94 (461)
.+++++++++.=.+ |||++|++....|.+.. +.+..+|.++++++. +.-|-+.+|.+++
T Consensus 11 ~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 11 QIAENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 56676644432222 69999999887776542 445556776665443 3346778999877
No 370
>KOG2640|consensus
Probab=94.00 E-value=0.021 Score=51.74 Aligned_cols=87 Identities=20% Similarity=0.405 Sum_probs=70.5
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe-cCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchh
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN-ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD 111 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd-~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~ 111 (461)
+..++-..||+.||+..+..+|++.-....+.. +....|+ ...-+.+..++++.+.|++.+... .-...|.|.++..
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l~ 152 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDLA 152 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeecc-ccchhhcccccHH
Confidence 367899999999999999999999877766652 3333333 234577899999999999998865 5778999999999
Q ss_pred HHHHHHHHHH
Q psy17502 112 AIIDVALEAI 121 (461)
Q Consensus 112 ~i~~~i~~~~ 121 (461)
.|++|..+.+
T Consensus 153 sLv~fy~~i~ 162 (319)
T KOG2640|consen 153 SLVNFYTEIT 162 (319)
T ss_pred HHHHHHHhhc
Confidence 9999998875
No 371
>KOG1752|consensus
Probab=93.95 E-value=0.3 Score=37.40 Aligned_cols=62 Identities=24% Similarity=0.338 Sum_probs=41.5
Q ss_pred hhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-h----hHhhcCCCCccEEEE
Q psy17502 26 FDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-S----LSSSHGVTGFPTVKI 94 (461)
Q Consensus 26 f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-~----l~~~~~i~~~P~l~~ 94 (461)
..+ ++.+++ +|.|..+||++|..+..-|.+ +.....+..+|-..+. + |.+.-+.+.+|.+++
T Consensus 7 v~~-~i~~~~--VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 7 VRK-MISENP--VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHH-HhhcCC--EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 344 566665 778999999999997777766 4444566666655432 3 333345678999887
No 372
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.85 E-value=0.22 Score=35.49 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=34.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh----hcCcc-cccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG----EFNIR-GYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~----~~~i~-~~P~i~~ 216 (461)
++.|..++|++|......+.+. .+.|..++++.+++..+ ..+.. ++|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 4678889999999888777652 46666777766544333 34655 7898754
No 373
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.80 E-value=0.15 Score=36.94 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=34.2
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh----hcCcccccEEEE
Q psy17502 161 VEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG----EFNIRGYPTIKF 216 (461)
Q Consensus 161 v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~----~~~i~~~P~i~~ 216 (461)
+.|..++|++|......+.+. .+.+..+|++.++...+ ..|..++|+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 567889999999988888752 35555666665544433 346677898754
No 374
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=93.62 E-value=0.3 Score=34.35 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=50.8
Q ss_pred eEEEEEECCCCHhHHhhHHHHHHHHHHc-CCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502 36 VWIVEYYAPWCGHCQSFKDEYMKLATAL-KGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95 (461)
Q Consensus 36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 95 (461)
..|-+|-+...+.+++....+.++.+++ .+.+.+=.||..+++++++.++|-.+|||+-.
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 4567777888888998888888888766 56799999999999999999999999997643
No 375
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.47 E-value=0.25 Score=37.00 Aligned_cols=59 Identities=29% Similarity=0.448 Sum_probs=43.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc--c------------------------------cHhhhhhcC
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT--V------------------------------HQRIAGEFN 207 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~--~------------------------------~~~l~~~~~ 207 (461)
++.|+.+.|++|..+.+.+.++.....+++.+...... . +..++.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 35789999999999999999987666666666554321 1 123566789
Q ss_pred cccccEEEEEc
Q psy17502 208 IRGYPTIKFFS 218 (461)
Q Consensus 208 i~~~P~i~~~~ 218 (461)
+.+.|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998865
No 376
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.38 E-value=0.32 Score=34.59 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=36.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh----hhhhcCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR----IAGEFNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~----l~~~~~i~~~P~i~~ 216 (461)
++.|..++|+.|+.....+++ ..+.+..+|+..++. +.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 567889999999988877775 246676777766543 444456667888754
No 377
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.26 E-value=0.74 Score=41.84 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=54.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe----------------C----------------------
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD----------------A---------------------- 196 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~----------------~---------------------- 196 (461)
+.+.+++.|+.+.|++|+++.+......+. +.+.+..+- |
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 345678899999999999998776654332 122221110 0
Q ss_pred ------------cccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502 197 ------------TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243 (461)
Q Consensus 197 ------------~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi 243 (461)
..+..+..++|+++.|++++-... .......|..+.+.|.+.+
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~----G~~~~v~G~~~~~~L~~~l 248 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKD----GTLQQVVGLPDPAQLAEIM 248 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC----CCEEEecCCCCHHHHHHHh
Confidence 012236778999999999887643 2444567888888887766
No 378
>PHA03050 glutaredoxin; Provisional
Probab=93.20 E-value=0.44 Score=36.96 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=34.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---c----HhhhhhcCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---H----QRIAGEFNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---~----~~l~~~~~i~~~P~i~~ 216 (461)
++.|..+||++|......+.+..-.. . .|..++++. . ..+.+.-|-.++|+|++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 67788999999998888777653211 1 233444433 2 23444557778899855
No 379
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=92.89 E-value=0.28 Score=37.40 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=32.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh-------hhhhcCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR-------IAGEFNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~-------l~~~~~i~~~P~i~~ 216 (461)
++.|..+||++|......+.+. .+.|..+|++.+++ +.+..|..++|.|++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 6678899999999888766653 24444555544322 223335678898743
No 380
>PRK10329 glutaredoxin-like protein; Provisional
Probab=92.86 E-value=0.45 Score=34.69 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=48.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh---hcCcccccEEEEEcCCCCCCcCcccccCCCCH
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG---EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTS 236 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~---~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~ 236 (461)
+..|..++|++|......+.+ ..+.|-.+|++.+++... ..|...+|++++ ++ . --+.++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-----~---~~~Gf~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-----L---SWSGFRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-----E---EEecCCH
Confidence 567888999999988777754 357888888877665433 346667898865 22 1 1235677
Q ss_pred HHHHHHHHhhc
Q psy17502 237 QDIVTWALNKY 247 (461)
Q Consensus 237 ~~i~~fi~~~~ 247 (461)
+.|.+.+..+.
T Consensus 67 ~~l~~~~~~~~ 77 (81)
T PRK10329 67 DMINRLHPAPH 77 (81)
T ss_pred HHHHHHHHhhh
Confidence 88888776543
No 381
>PRK13190 putative peroxiredoxin; Provisional
Probab=92.65 E-value=0.92 Score=39.75 Aligned_cols=90 Identities=14% Similarity=0.202 Sum_probs=56.0
Q ss_pred CCeEEE-EEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC---------------------------cccHhhhhhc
Q psy17502 156 DDIWLV-EFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDA---------------------------TVHQRIAGEF 206 (461)
Q Consensus 156 ~~~~~v-~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~---------------------------~~~~~l~~~~ 206 (461)
++.+++ .|.+.||+.|....+.|.+.+..++. .+.+..+.+ +.+..+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 344444 56789999999999999988887753 344433332 2234567777
Q ss_pred Ccc------cccEEEEEcCCCCCCcCcccc--cCCCCHHHHHHHHHhh
Q psy17502 207 NIR------GYPTIKFFSPGSRSASDAQEY--NGGRTSQDIVTWALNK 246 (461)
Q Consensus 207 ~i~------~~P~i~~~~~~~~~~~~~~~y--~g~~~~~~i~~fi~~~ 246 (461)
|+. ..|+.+++.+.++-. ....| .+.++.+++.+.+...
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~-~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVR-WMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHHh
Confidence 773 368888887653210 01112 3457888888877543
No 382
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=92.46 E-value=0.14 Score=44.17 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=29.1
Q ss_pred CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-|+|.|| +.||..|.+-.|.|.+++++|++
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~ 63 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQK 63 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh
Confidence 578999999 99999999999999999999864
No 383
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.28 E-value=0.52 Score=33.35 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=34.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH---hhhhhcCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ---RIAGEFNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~---~l~~~~~i~~~P~i~~ 216 (461)
++.|..++|+.|......+.+. .+.+..+|++.+. .+....|...+|.|++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi 56 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE
Confidence 5778899999999887777642 4556666665443 2333347778898743
No 384
>KOG3170|consensus
Probab=92.03 E-value=2.5 Score=36.03 Aligned_cols=104 Identities=17% Similarity=0.268 Sum_probs=70.2
Q ss_pred CceeEcChhhhhhhhhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502 138 KAVVELTDSNFEKLVYNSD--DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK 215 (461)
Q Consensus 138 ~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~ 215 (461)
..|..|+..++.+.+.... --|+|-.|...-+.|.-+...++.+|..| +.++|+.+-.++. ...|--.+.|||+
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~c---IpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATTC---IPNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEecccccc---cCCCcccCCCeEE
Confidence 3588898888877775433 34667788888888999999999999999 4788888743321 2345556689999
Q ss_pred EEcCCCCCCc--CcccccCC-CCHHHHHHHHHh
Q psy17502 216 FFSPGSRSAS--DAQEYNGG-RTSQDIVTWALN 245 (461)
Q Consensus 216 ~~~~~~~~~~--~~~~y~g~-~~~~~i~~fi~~ 245 (461)
+|..|.-... ....+-|. .+.+++..++-+
T Consensus 167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred EeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 9998742221 23334443 456666655544
No 385
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=0.48 Score=34.46 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=34.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-----hhhhhc-CcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-----RIAGEF-NIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-----~l~~~~-~i~~~P~i~~ 216 (461)
++.|..++|++|......+.+ ..+.|..++.+.+. +..++. |..++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567788999999888777663 34555555544433 333444 6788999877
No 386
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=91.81 E-value=0.37 Score=47.24 Aligned_cols=51 Identities=12% Similarity=0.252 Sum_probs=37.9
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh---hHhh---------cCCCCccEEEE
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS---LSSS---------HGVTGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~---l~~~---------~~i~~~P~l~~ 94 (461)
++.|+.+||++|++...-+.+. .|.+-.+|+++++. +.++ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999887666642 37788889887663 2222 36788999976
No 387
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.54 Score=47.87 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=63.1
Q ss_pred cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCchhhHhhcC--------CCCc
Q psy17502 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEKSLSSSHG--------VTGF 89 (461)
Q Consensus 21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~~--------i~~~ 89 (461)
=.++.|.+ .-++++|+|+-....||.=|.-|..+= .++|..++..+.-++||-++-|++-+.|. --|.
T Consensus 31 W~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 31 WGEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred cCHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 36788888 888999999999999999999987654 78888888889999999999998777663 5579
Q ss_pred cEEEEE-cCCC
Q psy17502 90 PTVKIF-SDKR 99 (461)
Q Consensus 90 P~l~~~-~~g~ 99 (461)
|--++. .+|+
T Consensus 110 PLtVfLTPd~k 120 (667)
T COG1331 110 PLTVFLTPDGK 120 (667)
T ss_pred ceeEEECCCCc
Confidence 954444 4553
No 388
>KOG2640|consensus
Probab=91.37 E-value=0.11 Score=47.26 Aligned_cols=87 Identities=17% Similarity=0.378 Sum_probs=67.4
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe-CcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD-ATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG 233 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~-~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~ 233 (461)
....+-..||+.||+..+...+.|+-....+.. +....++ ......+..++++.+.|++.+.... -...|-|.
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-----~~~~~~~~ 148 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-----CPASYRGE 148 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeeccc-----cchhhccc
Confidence 456788999999999988889988888777752 2222232 1124567789999999999999876 67889999
Q ss_pred CCHHHHHHHHHhhc
Q psy17502 234 RTSQDIVTWALNKY 247 (461)
Q Consensus 234 ~~~~~i~~fi~~~~ 247 (461)
.+..+|++|-.+.+
T Consensus 149 r~l~sLv~fy~~i~ 162 (319)
T KOG2640|consen 149 RDLASLVNFYTEIT 162 (319)
T ss_pred ccHHHHHHHHHhhc
Confidence 99999999987754
No 389
>PRK15000 peroxidase; Provisional
Probab=91.22 E-value=0.24 Score=43.29 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=29.4
Q ss_pred CCccEEEEEecC-cchhhhhchhHHHHHHHHHhh
Q psy17502 427 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 427 ~~kdvlv~fyap-wC~~Ck~l~p~~~~la~~~k~ 459 (461)
.+|-|+|.||+. ||..|.+-.|.+.++++.|++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~ 66 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK 66 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 468899999995 999999999999999999864
No 390
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.21 E-value=1.2 Score=33.84 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=30.5
Q ss_pred CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhh----hhhcCcccccEEEE
Q psy17502 166 PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI----AGEFNIRGYPTIKF 216 (461)
Q Consensus 166 ~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l----~~~~~i~~~P~i~~ 216 (461)
+||++|......+.+. .+.|..+|...+.++ .+.-|..++|.|++
T Consensus 25 ~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 8999999888877663 355666776555443 33345667888755
No 391
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.92 E-value=0.32 Score=42.88 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=33.8
Q ss_pred CCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEec
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNA 74 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~ 74 (461)
+++-+|.|++..|+||+.+.+.+ ..+.+.+.+++.+..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 45779999999999999999876 788888877777766654
No 392
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=90.67 E-value=1.9 Score=37.80 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=29.6
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC
Q psy17502 158 IWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDA 196 (461)
Q Consensus 158 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~ 196 (461)
++++.|.+.||+.|....+.+.+++..++. .+.+..+.+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~ 67 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSV 67 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 445567789999999999999999988863 455555543
No 393
>PRK10638 glutaredoxin 3; Provisional
Probab=89.99 E-value=1 Score=32.88 Aligned_cols=51 Identities=10% Similarity=0.142 Sum_probs=34.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh----hhhhcCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR----IAGEFNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~----l~~~~~i~~~P~i~~ 216 (461)
++.|..++|++|......+.+. .+.+..+|++.+.+ +.+..+...+|+|++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5677789999999888777752 45666677765543 334446667898754
No 394
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=89.69 E-value=1.7 Score=31.82 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=59.5
Q ss_pred CeEEEEEECCCCHhHHhhHHHHHHHHHH-cCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcch
Q psy17502 35 EVWIVEYYAPWCGHCQSFKDEYMKLATA-LKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA 110 (461)
Q Consensus 35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~-~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~ 110 (461)
.++|=.|.+..-+.+++....+.++.++ +.+.+.+=.||..++|++++.++|-.+|||+=-.. ....+.-|..+.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P-~P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILP-PPVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCC-CCcceeeccccc
Confidence 4677788888999999988888888764 45678888999999999999999999999765443 345566776653
No 395
>PRK09301 circadian clock protein KaiB; Provisional
Probab=88.53 E-value=2.2 Score=32.32 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=61.5
Q ss_pred CCeEEEEEECCCCHhHHhhHHHHHHHHHH-cCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcch
Q psy17502 34 DEVWIVEYYAPWCGHCQSFKDEYMKLATA-LKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA 110 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~-~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~ 110 (461)
..++|=+|.+..-+.+++....+.++-+. +.+.+.+=.||..++|++++.++|-.+|||+=-.. ....+.-|..+.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P-~P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILP-PPVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCC-CCcceeeccccc
Confidence 45788888899999999988888888764 45678888999999999999999999999765443 355667787654
No 396
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=88.45 E-value=6.3 Score=29.61 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC-CccccCCcchh
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN-PTPYQGARTAD 111 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~-~~~y~g~~~~~ 111 (461)
.+++.++.|..+. ..|..+..-++++|. +.++|.+-..+... ..|++.+..+|+. -.+|.|.-...
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~-lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIAS-LSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHH-hCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 4556777887765 888887777777775 34556664433221 4799999876532 37899999998
Q ss_pred HHHHHHHH
Q psy17502 112 AIIDVALE 119 (461)
Q Consensus 112 ~i~~~i~~ 119 (461)
++..++..
T Consensus 85 Ef~Slila 92 (94)
T cd02974 85 EFTSLVLA 92 (94)
T ss_pred hHHHHHHH
Confidence 98888764
No 397
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=88.33 E-value=0.55 Score=41.06 Aligned_cols=32 Identities=6% Similarity=0.135 Sum_probs=27.4
Q ss_pred CccEEEEEec-CcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYYA-PWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fya-pwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-++|.||+ .||.+|..-.+.+.+++++|++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~ 68 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE 68 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 6789999995 8899999888899999888864
No 398
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=88.25 E-value=5 Score=29.87 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=44.4
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG 233 (461)
Q Consensus 154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~ 233 (461)
+.++..+|+||... .......|+++|..+++...|...-.+ +.....-.+ +.+++|++.+. .....|.|.
T Consensus 14 d~~kr~iIgYF~~~---~~~eY~~f~kvA~~lr~dC~F~v~~G~----~~~~~~~~~-~~~i~frp~~~--~~~~~y~G~ 83 (91)
T cd03070 14 DRSKRNIIGYFESK---DSDEYDNFRKVANILRDDCSFLVGFGD----VTKPERPPG-DNIIYFPPGHN--APDMVYLGS 83 (91)
T ss_pred CcCCceEEEEEcCC---CChhHHHHHHHHHHHhhcCeEEEEecc----ccccccCCC-CCeEEECCCCC--CCceEEccC
Confidence 56677888888664 356788999999999987666442111 111222233 34566665422 345789998
Q ss_pred CC
Q psy17502 234 RT 235 (461)
Q Consensus 234 ~~ 235 (461)
.+
T Consensus 84 ~t 85 (91)
T cd03070 84 LT 85 (91)
T ss_pred CC
Confidence 63
No 399
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=88.22 E-value=0.37 Score=42.42 Aligned_cols=29 Identities=28% Similarity=0.745 Sum_probs=24.1
Q ss_pred ccEEEEEecCcchhhhhchhHH---HHHHHHH
Q psy17502 429 EVWIVEYYAPWCGHCQSFKDEY---MKLATAL 457 (461)
Q Consensus 429 kdvlv~fyapwC~~Ck~l~p~~---~~la~~~ 457 (461)
+..+|+|+..-|+||.+++|.+ ..+-+.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~ 69 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKL 69 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhC
Confidence 4569999999999999999876 6666654
No 400
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=88.15 E-value=1.8 Score=32.26 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhh----hhhcCcccccEEEE
Q psy17502 166 PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI----AGEFNIRGYPTIKF 216 (461)
Q Consensus 166 ~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l----~~~~~i~~~P~i~~ 216 (461)
+||++|......+.+. .+.|..+|...+.++ .+..|-.++|.|++
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 6999998888777663 256666666555443 33446677898744
No 401
>PRK13191 putative peroxiredoxin; Provisional
Probab=88.06 E-value=0.59 Score=41.37 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=26.5
Q ss_pred CccEEE-EEecCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIV-EYYAPWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv-~fyapwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-|+| .|-+.||..|..-.|.+.++++.|+.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~ 65 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK 65 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 565666 55599999999999999999999863
No 402
>PRK10824 glutaredoxin-4; Provisional
Probab=87.42 E-value=1.4 Score=34.48 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh----hcCcccccEEEE
Q psy17502 166 PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG----EFNIRGYPTIKF 216 (461)
Q Consensus 166 ~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~----~~~i~~~P~i~~ 216 (461)
|+|++|......+.+.. +.+..+|...+.++.. .-|-..+|.|++
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 59999999888877753 3444455544444333 335567787665
No 403
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=87.33 E-value=0.69 Score=42.07 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=28.5
Q ss_pred CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-|+|.|| +-||..|.+-.|.|.++.+.|++
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~ 130 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE 130 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 567888899 89999999999999999999864
No 404
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=86.84 E-value=1.6 Score=35.95 Aligned_cols=38 Identities=39% Similarity=0.615 Sum_probs=29.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEE
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~ 193 (461)
+.++.++.|+.++|++|..+.+.+.++...+ +++.+..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~ 41 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVF 41 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEE
Confidence 3567889999999999999999998877665 4444443
No 405
>PRK13189 peroxiredoxin; Provisional
Probab=86.81 E-value=0.76 Score=40.91 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=27.1
Q ss_pred CCccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502 427 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 427 ~~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~ 459 (461)
.+|-|+|+|| +.||..|.+-.+.+.++++.|++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~ 67 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE 67 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3566666555 99999999999999999999864
No 406
>KOG3171|consensus
Probab=86.67 E-value=5.2 Score=34.52 Aligned_cols=106 Identities=16% Similarity=0.217 Sum_probs=71.0
Q ss_pred ceeEc-ChhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502 139 AVVEL-TDSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK 215 (461)
Q Consensus 139 ~v~~l-~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~ 215 (461)
-|.++ +.++|.+.+... ....+|..|.+.-..|..+.....=+|..+ +.++|.++..+ +....++|.....|++.
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss-~~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS-NTGASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec-cccchhhhcccCCceEE
Confidence 36777 457777766333 235678889988888988888888888888 57999888543 33456788888999999
Q ss_pred EEcCCCCCCcCccc----ccCCCCHHHHHHHHHhhc
Q psy17502 216 FFSPGSRSASDAQE----YNGGRTSQDIVTWALNKY 247 (461)
Q Consensus 216 ~~~~~~~~~~~~~~----y~g~~~~~~i~~fi~~~~ 247 (461)
+|+.|.- ..+... +-.++...++..|+....
T Consensus 217 iYkgGeL-IgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 217 IYKGGEL-IGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred EeeCCch-hHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 9998821 001111 122355556666665543
No 407
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=86.27 E-value=1.5 Score=38.80 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCCCCCceEcCccc---hhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC
Q psy17502 12 YPSYSDVIKLTTSN---FDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76 (461)
Q Consensus 12 ~~~~~~v~~l~~~~---f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~ 76 (461)
...++.|+.++.++ +-+ +.+.++|.++.|.+-.|++-..-.++|.++++++.+.+.|..|-+.+
T Consensus 78 ~APns~vv~l~g~~~~~ild-f~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E 144 (237)
T PF00837_consen 78 PAPNSPVVTLDGQRSCRILD-FAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE 144 (237)
T ss_pred CCCCCceEeeCCCcceeHHH-hccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence 34567899998877 444 56789999999999999999999999999999998877777776553
No 408
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=85.90 E-value=2.4 Score=35.29 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=34.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHh--cCceEEEEEeC
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKLGAVDA 196 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~--~~~i~f~~v~~ 196 (461)
+.++.++.|+...|++|..+.+.+.++.+.+ .+.+.|.....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3467899999999999999999999988888 67788877654
No 409
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=85.87 E-value=1.4 Score=37.40 Aligned_cols=40 Identities=38% Similarity=0.555 Sum_probs=33.8
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEE
Q psy17502 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV 194 (461)
Q Consensus 155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v 194 (461)
+.++.++.|+...|++|..+.+....+.+.+.+.+.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 4678899999999999999999999998888766666543
No 410
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=84.60 E-value=0.84 Score=33.19 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=45.6
Q ss_pred EEECCCCHhHHhhHHHHHHHHHH-cCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502 40 EYYAPWCGHCQSFKDEYMKLATA-LKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 40 ~f~~~~c~~C~~~~~~~~~~a~~-~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 94 (461)
+|-+..-..++++...+..+.+. +.+.+.+-.||..++|++++.++|-.+|||+-
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 35566667778888888888876 45679999999999999999999999999764
No 411
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=84.48 E-value=9.1 Score=32.89 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=27.9
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEe
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVN 73 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd 73 (461)
+.+|+..-|+.|-...+.+.++.+.+.+ +|.+.-+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 6788999999999999999999988833 34444443
No 412
>PRK13599 putative peroxiredoxin; Provisional
Probab=83.37 E-value=1.1 Score=39.59 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=26.7
Q ss_pred CccE-EEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502 428 DEVW-IVEYYAPWCGHCQSFKDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdv-lv~fyapwC~~Ck~l~p~~~~la~~~k~ 459 (461)
+|-| |+.|-|.||+.|..-.|.|.+++++|++
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~ 60 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKE 60 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 4554 5666799999999999999999999864
No 413
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=83.19 E-value=3.3 Score=34.45 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=39.9
Q ss_pred CeEEEEEE-CCCCHhHHhh-HHHHHHHHHHcCC-ce-EEEEEecCCc---hhhHhhcCC-CCcc
Q psy17502 35 EVWIVEYY-APWCGHCQSF-KDEYMKLATALKG-VV-KVGAVNADEE---KSLSSSHGV-TGFP 90 (461)
Q Consensus 35 ~~~lv~f~-~~~c~~C~~~-~~~~~~~a~~~~~-~v-~~~~vd~~~~---~~l~~~~~i-~~~P 90 (461)
+.+++.|| +.||+.|..- .+.|.+.+.++.. .+ .+..|.++.. .+.++++++ ..+|
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 44555555 7799999998 9999999999864 35 4777777643 456777777 2454
No 414
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=82.68 E-value=4.6 Score=33.20 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=35.8
Q ss_pred EEEEECC------CCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCC----CCccEEEE
Q psy17502 38 IVEYYAP------WCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGV----TGFPTVKI 94 (461)
Q Consensus 38 lv~f~~~------~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i----~~~P~l~~ 94 (461)
+|.|+++ +|++|+++...|+.. .|.+-.+|.+.+++ |.+..+- ..+|.|++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4556666 899999888776643 37788899877654 4444454 67888876
No 415
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.20 E-value=10 Score=34.26 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=27.3
Q ss_pred hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502 79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA 120 (461)
Q Consensus 79 ~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~ 120 (461)
.+++++||.++|++++-.. .+.|..+.+++.+.+...
T Consensus 206 ~~a~~~gv~gTPt~~v~~~-----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNGK-----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEECCe-----eecCCCCHHHHHHHHHHh
Confidence 3667789999999888432 678888877777766543
No 416
>KOG1752|consensus
Probab=81.55 E-value=5.7 Score=30.43 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=35.0
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-hh----hhhcCcccccEEEE
Q psy17502 159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-RI----AGEFNIRGYPTIKF 216 (461)
Q Consensus 159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-~l----~~~~~i~~~P~i~~ 216 (461)
.+|.|..+||+.|..+...|.. +.....+..+|-..+. ++ .+--+-+++|.+++
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 3567889999999988777777 5445666777654322 22 22223456788766
No 417
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=80.91 E-value=16 Score=29.56 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=61.6
Q ss_pred hcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCch------------------hhHhhcCCCCc
Q psy17502 31 IKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEK------------------SLSSSHGVTGF 89 (461)
Q Consensus 31 ~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~------------------~l~~~~~i~~~ 89 (461)
-++.++.+|+.++|.-..+..|-... +.+.+-+++++.+-.-|.+... ..++.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 34568999999999875544443333 4444445566666666765432 24566789999
Q ss_pred cEEEEEcCC----CCCccccCCcchhHHHHHHHHHH
Q psy17502 90 PTVKIFSDK----RNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 90 P~l~~~~~g----~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
|.+.+.... ..+.+..|..+++++++-+...+
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 998887521 23466799999999999887764
No 418
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=5.3 Score=33.15 Aligned_cols=58 Identities=19% Similarity=0.397 Sum_probs=42.2
Q ss_pred CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC---chhhHhhcCCCCccE
Q psy17502 33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE---EKSLSSSHGVTGFPT 91 (461)
Q Consensus 33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~---~~~l~~~~~i~~~P~ 91 (461)
.++.++++|| ..+++-|-.-.-.|++...+++. ...+..|..+. .+.+++++++. +|-
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~-f~L 91 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT-FPL 91 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-cee
Confidence 4458888898 55888898888888888888865 46666677664 45677777766 443
No 419
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=80.52 E-value=8 Score=26.97 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=33.7
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC-chhhHhhcCCCCccEEEE
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE-EKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~P~l~~ 94 (461)
++|+.+||+.|++.+-.+.+. +-.+.+..||... .+++.+......+|+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~----gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA----GITVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc----CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 467889999999876444322 2135666666543 345656666778999864
No 420
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.69 E-value=2.9 Score=29.35 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=37.1
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch----------------hhHhhcCCCCccEEEEEcCCCC
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK----------------SLSSSHGVTGFPTVKIFSDKRN 100 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~----------------~l~~~~~i~~~P~l~~~~~g~~ 100 (461)
++|++..|+.|..+..+++++. +.+-.|++...- +-++.+|--|+|+|.+= +|+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~v 75 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKV 75 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcE
Confidence 7899999999998887777653 445556665432 12445677789998774 4433
No 421
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=78.91 E-value=4.6 Score=39.69 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=35.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh---hhhh---------cCcccccEEEE
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR---IAGE---------FNIRGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~---l~~~---------~~i~~~P~i~~ 216 (461)
++.|..+||++|......+.+ ..+.|..+|++.++. +.++ .|..++|+|++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 677889999999888776666 247777787775543 2112 35677899866
No 422
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=75.01 E-value=5.4 Score=35.39 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=49.9
Q ss_pred CCCCCCCceeEcChhh---hhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC
Q psy17502 132 GRKGSSKAVVELTDSN---FEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196 (461)
Q Consensus 132 ~~~~~~~~v~~l~~~~---~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~ 196 (461)
+...++++++.++.++ +-++ .+.+.|.++.|-+=.|++=..-...|.++++++.+...|..|.+
T Consensus 76 G~~APns~vv~l~g~~~~~ildf-~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDF-AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHh-ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 3456777888887766 4444 46789999999998888877778899999999988777777654
No 423
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=74.88 E-value=4.6 Score=30.97 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=24.1
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~ 77 (461)
+..|+.++|+.|++...-+.+. .+.+-.+|..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 3578899999999987555542 256667777654
No 424
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=71.92 E-value=7.5 Score=30.52 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=25.2
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~ 78 (461)
..|+.++|+.|++...-+.+ ..+.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence 46889999999998766654 23667778877654
No 425
>PHA03075 glutaredoxin-like protein; Provisional
Probab=71.13 E-value=8.6 Score=29.69 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=26.7
Q ss_pred CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec
Q psy17502 35 EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74 (461)
Q Consensus 35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~ 74 (461)
+.+||+|.-|-|+-|+.....+.++.. +..+.+||.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~led----eY~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELED----EYDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhc----cccEEEEEe
Confidence 458999999999999988877755444 345666663
No 426
>KOG2792|consensus
Probab=70.84 E-value=31 Score=31.01 Aligned_cols=89 Identities=11% Similarity=0.207 Sum_probs=59.5
Q ss_pred CCeEEEEEECCCCHh-HHhhHHHHHHHHHHcCCc------eEEEEEecCCch--------------------------hh
Q psy17502 34 DEVWIVEYYAPWCGH-CQSFKDEYMKLATALKGV------VKVGAVNADEEK--------------------------SL 80 (461)
Q Consensus 34 ~~~~lv~f~~~~c~~-C~~~~~~~~~~a~~~~~~------v~~~~vd~~~~~--------------------------~l 80 (461)
++.+|+||.=+.|+. |-.-...+.++.++++.+ -.|+.||-..+. ++
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 568999999999995 877777777777776542 267777764332 36
Q ss_pred HhhcCCCCcc-------------EEEEE--c-CCCCCccccC-CcchhHHHHHHHHHHhh
Q psy17502 81 SSSHGVTGFP-------------TVKIF--S-DKRNPTPYQG-ARTADAIIDVALEAIRQ 123 (461)
Q Consensus 81 ~~~~~i~~~P-------------~l~~~--~-~g~~~~~y~g-~~~~~~i~~~i~~~~~~ 123 (461)
|++|.|..-+ ++++| . +| +...|.| .++++++.+-|.+++..
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg-~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEG-EFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCc-ceehhhcccCCHHHHHHHHHHHHHh
Confidence 7777664422 34444 3 55 4455555 68899999888887643
No 427
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=70.52 E-value=16 Score=24.63 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=31.6
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch--hhHhhcCCCCccEEEE
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK--SLSSSHGVTGFPTVKI 94 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~--~l~~~~~i~~~P~l~~ 94 (461)
..|+.++|+.|++.+-.+.... -.+....++..... ++-+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKG----LPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcC----CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 4678899999998765555442 12444445543322 2445566778998765
No 428
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=69.77 E-value=26 Score=24.68 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=45.2
Q ss_pred EEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc-hhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502 40 EYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE-KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 40 ~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~-~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i 117 (461)
+++.++|+.|++.+-.+ ++++ .+.+..|+..+. ..+.+...-..+|+|. . +|.. ..+...|.+|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l-----~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~-~-~g~~------l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLAL-----EEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLV-D-DGEV------LTDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHH-----HHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE-E-TTEE------EESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHH-----HHcCCeEEEeccCcccchhHHHhhcccccceEEE-E-CCEE------EeCHHHHHHHH
Confidence 46789999999876333 3333 355666665543 5566666777899997 3 3431 23567888888
Q ss_pred HHHH
Q psy17502 118 LEAI 121 (461)
Q Consensus 118 ~~~~ 121 (461)
.+..
T Consensus 68 ~~~~ 71 (75)
T PF13417_consen 68 EERY 71 (75)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 8765
No 429
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=69.35 E-value=26 Score=24.83 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=40.1
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc----hhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHH
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE----KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i 113 (461)
+..++.++|+.|++.+-.+.+. + +.+-.++.... +++.+..+-..+|+|..-.+| . -......|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----g-i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~-~-----~l~es~~I 69 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----E-LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG-V-----QMFESADI 69 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----C-CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCC-e-----EEEcHHHH
Confidence 4567788999999866444332 2 33444555432 334444455679998542222 1 13455677
Q ss_pred HHHHHHH
Q psy17502 114 IDVALEA 120 (461)
Q Consensus 114 ~~~i~~~ 120 (461)
..|+.+.
T Consensus 70 ~~yL~~~ 76 (77)
T cd03041 70 VKYLFKT 76 (77)
T ss_pred HHHHHHh
Confidence 7777653
No 430
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=69.29 E-value=7.9 Score=30.08 Aligned_cols=52 Identities=27% Similarity=0.338 Sum_probs=31.7
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch----hhHhhcCCCCccEEEEEc
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK----SLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~P~l~~~~ 96 (461)
..|+.++|+.|++...-+++ ..+.|-.+|..+++ ++.+-.+..+.|.--+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 57889999999997755553 23677777776543 233323333445444444
No 431
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=68.58 E-value=7.3 Score=31.21 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=32.8
Q ss_pred CchhhHhhcCCCCccEEEEEcCCC-----------CCccccCCcchhHHHHHHHH
Q psy17502 76 EEKSLSSSHGVTGFPTVKIFSDKR-----------NPTPYQGARTADAIIDVALE 119 (461)
Q Consensus 76 ~~~~l~~~~~i~~~P~l~~~~~g~-----------~~~~y~g~~~~~~i~~~i~~ 119 (461)
-+|.+-++|+|+.+|++++.+++. ......|..+.+.-++.+.+
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 359999999999999999998653 23345677777666666654
No 432
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=68.10 E-value=14 Score=29.72 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=52.9
Q ss_pred CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCC----ccEEEEEcCCCCCccccCCcch
Q psy17502 35 EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTG----FPTVKIFSDKRNPTPYQGARTA 110 (461)
Q Consensus 35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~----~P~l~~~~~g~~~~~y~g~~~~ 110 (461)
..-++.+++|.|+=|+.+...++ .++ +.+..+..++-..+-+++||.. =-|.++ +| .-.+|...+
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk-----~~G-f~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G---y~vEGHVPa 93 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMK-----ANG-FEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG---YYVEGHVPA 93 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHH-----hCC-cEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC---EEEeccCCH
Confidence 35688899999999997665554 122 7777788887788888888753 223333 34 234788889
Q ss_pred hHHHHHHHHH
Q psy17502 111 DAIIDVALEA 120 (461)
Q Consensus 111 ~~i~~~i~~~ 120 (461)
++|..++.+.
T Consensus 94 ~aI~~ll~~~ 103 (149)
T COG3019 94 EAIARLLAEK 103 (149)
T ss_pred HHHHHHHhCC
Confidence 9998888764
No 433
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=67.82 E-value=5.5 Score=30.66 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=24.7
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~ 78 (461)
+..|+.|+|+.|++...-+.+- .+.+-.+|..+++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccCC
Confidence 3578899999999876555432 3667777776554
No 434
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=66.63 E-value=23 Score=24.49 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=32.5
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC----chhhHhhcCCCCccEEEE
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE----EKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~~ 94 (461)
.+|+.++|+.|++.+-.+....- .+....++... .+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 46888999999987755544321 24444555422 234555556677999875
No 435
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=66.38 E-value=17 Score=25.17 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=28.9
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 94 (461)
.+++.++|++|++.+-.+....- .+....++-.......+..+-..+|+|..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILEK 53 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEEe
Confidence 35778999999987655443311 23343444333222333444556888754
No 436
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=65.75 E-value=7.8 Score=32.23 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=26.4
Q ss_pred CccEEEEEe-cCcchhhhhc-hhHHHHHHHHHhh
Q psy17502 428 DEVWIVEYY-APWCGHCQSF-KDEYMKLATALKV 459 (461)
Q Consensus 428 ~kdvlv~fy-apwC~~Ck~l-~p~~~~la~~~k~ 459 (461)
+|.|+|.|| +-||..|-.- .+.|.+..+.|++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~ 62 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA 62 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH
Confidence 456777777 8999999997 9999999988864
No 437
>KOG2507|consensus
Probab=64.89 E-value=36 Score=32.87 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=66.5
Q ss_pred cCCCeEEEEEECCCCHhHHhhH-HHHHHHH--HHcCCceEEEEEecCC--chhhHhhcCCCCccEEEEEc-CCCCCcccc
Q psy17502 32 KSDEVWIVEYYAPWCGHCQSFK-DEYMKLA--TALKGVVKVGAVNADE--EKSLSSSHGVTGFPTVKIFS-DKRNPTPYQ 105 (461)
Q Consensus 32 ~~~~~~lv~f~~~~c~~C~~~~-~~~~~~a--~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~~-~g~~~~~y~ 105 (461)
+.++-++|.|.+......+.+. -.|.+.. +.+-..+..++|++.. ...+..-|-+-.+|++++.. .|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 4667888999999999888876 3443332 3333447777888754 45677888999999999987 666667789
Q ss_pred CCcchhHHHHHHHHHHh
Q psy17502 106 GARTADAIIDVALEAIR 122 (461)
Q Consensus 106 g~~~~~~i~~~i~~~~~ 122 (461)
|..++++|..-|.+...
T Consensus 96 g~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 96 GFVTADELASSIEKVWL 112 (506)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999998877666543
No 438
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=64.47 E-value=12 Score=30.10 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=24.6
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~ 78 (461)
+..|+.|+|+.|++...-+.+- .+.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4678899999999876554432 3667777776554
No 439
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=64.22 E-value=27 Score=24.62 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=41.1
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i 117 (461)
+..|+.+.|+.|++.+-.+....- .+.+..+|.....++ +.-+...+|+|..-..|... --.....|.+|+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi----~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~----~l~eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI----PYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQ----QLVDSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC----ceEEEECCchhHHHH-HHhCCCccCEEEECCCCCcc----EEEcHHHHHHHH
Confidence 457888999999988744433211 233333333222333 33456679998764211110 134566777887
Q ss_pred HHHH
Q psy17502 118 LEAI 121 (461)
Q Consensus 118 ~~~~ 121 (461)
.+.+
T Consensus 73 ~~~~ 76 (77)
T cd03040 73 KTYL 76 (77)
T ss_pred HHHc
Confidence 7653
No 440
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=63.53 E-value=4.7 Score=28.20 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=18.0
Q ss_pred EEEecCcchhhhhchhHHHHHHH
Q psy17502 433 VEYYAPWCGHCQSFKDEYMKLAT 455 (461)
Q Consensus 433 v~fyapwC~~Ck~l~p~~~~la~ 455 (461)
+.|+.+||++|.+.+-..++.+-
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl 24 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI 24 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC
Confidence 45789999999998877766543
No 441
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=61.12 E-value=32 Score=30.22 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=44.4
Q ss_pred CCCeEEEEEECCCCHh-HHhhHHHHHHHHHHcC-C---c--eEEEEEecCC-chhhHhhcCC-CCccEEEE
Q psy17502 33 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALK-G---V--VKVGAVNADE-EKSLSSSHGV-TGFPTVKI 94 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~-C~~~~~~~~~~a~~~~-~---~--v~~~~vd~~~-~~~l~~~~~i-~~~P~l~~ 94 (461)
++++++|.|.=..|+. |-.....+.++.+++. + + +.++.||-+. .+++.++|.. ...|....
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ 136 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIG 136 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeee
Confidence 6789999999899985 9888888999988886 2 2 5666666543 3666777776 44444433
No 442
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.79 E-value=24 Score=26.58 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=39.2
Q ss_pred hhHHHhcCCCeEEEEEECC---CCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcC-CCC---ccEEEE
Q psy17502 26 FDDKVIKSDEVWIVEYYAP---WCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHG-VTG---FPTVKI 94 (461)
Q Consensus 26 f~~~~~~~~~~~lv~f~~~---~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~-i~~---~P~l~~ 94 (461)
.++ .+++++++|.+=.+| .||.+.+... +-..+.. +.|+.||.-.++++.+... ... +|.|++
T Consensus 8 I~~-~i~~n~VvLFMKGtp~~P~CGFS~~~vq----iL~~~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi 77 (105)
T COG0278 8 IQK-QIKENPVVLFMKGTPEFPQCGFSAQAVQ----ILSACGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV 77 (105)
T ss_pred HHH-HhhcCceEEEecCCCCCCCCCccHHHHH----HHHHcCC-cceeEEeeccCHHHHhccHhhcCCCCCceeeE
Confidence 344 577888777776665 4666655443 3333333 7899999999998876654 233 555544
No 443
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=60.78 E-value=22 Score=27.78 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred CCchhhHhhcCCCCccEEEEEcC
Q psy17502 75 DEEKSLSSSHGVTGFPTVKIFSD 97 (461)
Q Consensus 75 ~~~~~l~~~~~i~~~P~l~~~~~ 97 (461)
.-+|.+.++|+|+.+|++++-++
T Consensus 58 ~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 58 QIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred eEChhHHhhCCceEcCEEEEEcC
Confidence 33599999999999999999876
No 444
>PRK12559 transcriptional regulator Spx; Provisional
Probab=59.40 E-value=16 Score=29.34 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=23.9
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~ 78 (461)
+..|+.|+|+.|++...-+++- .+.+-.+|..+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCCc
Confidence 5678899999999876544432 2566667765543
No 445
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=58.72 E-value=36 Score=23.52 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=40.1
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-hhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHH
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV 116 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~ 116 (461)
+..|+.++|+.|++..-.++...- .+....+|.... +++.+......+|++.. +|. -......|..|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~------~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLVD--RDL------VLYESRIIMEY 68 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEEE--CCE------EEEcHHHHHHH
Confidence 357788999999987655433221 244444554433 34555555678997742 321 13445567777
Q ss_pred HHH
Q psy17502 117 ALE 119 (461)
Q Consensus 117 i~~ 119 (461)
+.+
T Consensus 69 L~~ 71 (73)
T cd03059 69 LDE 71 (73)
T ss_pred HHh
Confidence 654
No 446
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=58.32 E-value=48 Score=23.46 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=41.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHh-cCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEKAASEL-EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~~a~~~-~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~ 219 (461)
+..|-+...+.+........++-+.+ .+.+.+-.+|..+++++++.++|-..||++=..+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P 64 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLP 64 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCC
Confidence 34444544344555555666655544 4678888899999999999999999999764443
No 447
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=57.75 E-value=36 Score=27.98 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=33.3
Q ss_pred EEEEeCC------CChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh----hhhhcCc----ccccEEEE
Q psy17502 160 LVEFFAP------WCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR----IAGEFNI----RGYPTIKF 216 (461)
Q Consensus 160 ~v~f~~~------~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~----l~~~~~i----~~~P~i~~ 216 (461)
+|.|+++ +|++|......+++. .+.|..+|++.+.+ +.+..+- ..+|.|++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566677 899998887777653 46777788766544 3333443 45787665
No 448
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=57.36 E-value=50 Score=24.19 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=33.3
Q ss_pred EEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc-hhhHhhcCCCCccEEEE
Q psy17502 37 WIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE-KSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~-~~l~~~~~i~~~P~l~~ 94 (461)
.+..|+.+.|+.|++..-.+.. .+ .+.+..++.... +++.+......+|+|..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~-----~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAA-----KNIPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHH-----cCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 3566778899999976543333 23 355555665443 33555556778999875
No 449
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=56.90 E-value=94 Score=24.39 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=56.9
Q ss_pred CCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCc-eEEEEE-ecCCch-----------hhHhhcCCC--CccEEEEEcC
Q psy17502 34 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKGV-VKVGAV-NADEEK-----------SLSSSHGVT--GFPTVKIFSD 97 (461)
Q Consensus 34 ~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~v-d~~~~~-----------~l~~~~~i~--~~P~l~~~~~ 97 (461)
..-+||.|. ++..+.-+.....+.+....+..+ +.+..+ +-.... .|.++|++. ++-.+++=++
T Consensus 9 ~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKD 88 (118)
T PF13778_consen 9 KNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKD 88 (118)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCC
Confidence 334455554 445666777777888766667654 444444 333333 688888854 4445566668
Q ss_pred CCCCccccCCcchhHHHHHHHH
Q psy17502 98 KRNPTPYQGARTADAIIDVALE 119 (461)
Q Consensus 98 g~~~~~y~g~~~~~~i~~~i~~ 119 (461)
|+...++.+..+.++|...|..
T Consensus 89 G~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 89 GGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred CcEEEecCCCCCHHHHHHHHhC
Confidence 8888889999999999887754
No 450
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=56.12 E-value=26 Score=27.39 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=24.1
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~ 77 (461)
+..|+.++|+.|++....+++. .+.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 4578899999999977666542 256667777654
No 451
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=55.40 E-value=20 Score=28.79 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=33.4
Q ss_pred ccHhhhhhcCcccccEEEEEcCCCC-------CCcCcccccCCCCHHHHHHHHHhh
Q psy17502 198 VHQRIAGEFNIRGYPTIKFFSPGSR-------SASDAQEYNGGRTSQDIVTWALNK 246 (461)
Q Consensus 198 ~~~~l~~~~~i~~~P~i~~~~~~~~-------~~~~~~~y~g~~~~~~i~~fi~~~ 246 (461)
-++.+.++|+|+..|++++.+.+.. ....+..-.|+.+.+.-.+.+.+.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 3789999999999999999987620 001233345777777666666543
No 452
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.36 E-value=18 Score=31.05 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=31.9
Q ss_pred hhhHhhcCCCCccEEEEEcCCCCCccccC--CcchhHHHHHHHHHH
Q psy17502 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQG--ARTADAIIDVALEAI 121 (461)
Q Consensus 78 ~~l~~~~~i~~~P~l~~~~~g~~~~~y~g--~~~~~~i~~~i~~~~ 121 (461)
..++++.++.++||+.+-++|+-...=.| ..+.+....++...+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 45899999999999999998754333345 456677777776653
No 453
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=53.82 E-value=48 Score=25.82 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502 173 NLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219 (461)
Q Consensus 173 ~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~ 219 (461)
.+.+....+.+.....-.-+.+ .-++.+.++|+|+..|++++-+.
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v--~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGV--QIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcce--eEChhHHhhCCceEcCEEEEEcC
Confidence 4555555555444322111222 24789999999999999999987
No 454
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=53.75 E-value=17 Score=27.82 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=16.0
Q ss_pred EEEeCCCChhhhhhhHHHHH
Q psy17502 161 VEFFAPWCGHCKNLEPHWEK 180 (461)
Q Consensus 161 v~f~~~~c~~c~~~~~~~~~ 180 (461)
..|+.++|+.|+.....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46788999999988766665
No 455
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=53.04 E-value=53 Score=27.34 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=37.0
Q ss_pred CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC--ceEEEE-EeC-cccHhhhhhcCcc
Q psy17502 156 DDIWLVEFFA-PWCGHCKNLEPHWEKAASELEG--KVKLGA-VDA-TVHQRIAGEFNIR 209 (461)
Q Consensus 156 ~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~--~i~f~~-v~~-~~~~~l~~~~~i~ 209 (461)
.+.++++||. .+++.|....-.|+.....+.. ...++. .|. ..++..+++++++
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 4588899995 5667788888899998888864 233332 232 2356778888876
No 456
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=52.41 E-value=65 Score=22.26 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=32.5
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC----chhhHhhcCCCCccEEEE
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE----EKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~~ 94 (461)
.+|+.++|++|++.+-.+... +-.+....+|..+ .+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 468899999998766444432 2234555566432 245666556678999953
No 457
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=47.93 E-value=1.3e+02 Score=23.21 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=71.6
Q ss_pred eEcCccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCchhhHh----hcCCCC-c
Q psy17502 19 IKLTTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEKSLSS----SHGVTG-F 89 (461)
Q Consensus 19 ~~l~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~~~l~~----~~~i~~-~ 89 (461)
..|+.+++.+ +-. .++..+|.|--+..+.-.+|.+.+.++|+.... ++.++-||-++-|-+.. -|+|.- -
T Consensus 4 rkl~~~~m~e-~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~ 82 (120)
T cd03074 4 RKLKPENMFE-TWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR 82 (120)
T ss_pred hhccHHHHHH-hhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence 4566666666 322 346889999999999999999999999998854 59999999998876543 456542 5
Q ss_pred cEEEEEc--CC-CCCccccC---CcchhHHHHHHHHH
Q psy17502 90 PTVKIFS--DK-RNPTPYQG---ARTADAIIDVALEA 120 (461)
Q Consensus 90 P~l~~~~--~g-~~~~~y~g---~~~~~~i~~~i~~~ 120 (461)
|.+-+.. +. +.-.+..+ ..+++++..|+...
T Consensus 83 PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 83 PQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 8777765 21 22233333 36788899998753
No 458
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.73 E-value=36 Score=30.11 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=33.8
Q ss_pred hHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhh
Q psy17502 80 LSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKV 125 (461)
Q Consensus 80 l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~ 125 (461)
.+++.||+++|++++ +| .....|..+.+.+..-|.+.+....
T Consensus 176 ~A~e~gI~gVP~fv~--d~--~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DG--KYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHCCCccCceEEE--cC--cEeecCCCCHHHHHHHHHHHHhccc
Confidence 677899999999998 32 2456999999999999998876543
No 459
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=47.57 E-value=1.5e+02 Score=24.00 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=47.4
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccc----cEEEEEcCCCCCCcCcccccCC
Q psy17502 158 IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGY----PTIKFFSPGSRSASDAQEYNGG 233 (461)
Q Consensus 158 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~----P~i~~~~~~~~~~~~~~~y~g~ 233 (461)
.-++.+++|.|+=|.......+. ..+.+-.+..+.-..+.+++||..- =|.++ .-...+|.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI---------~Gy~vEGH 90 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI---------NGYYVEGH 90 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE---------cCEEEecc
Confidence 45677899999988766554441 2355555554556667778998731 12222 12335788
Q ss_pred CCHHHHHHHHHhh
Q psy17502 234 RTSQDIVTWALNK 246 (461)
Q Consensus 234 ~~~~~i~~fi~~~ 246 (461)
.-.++|..++.+.
T Consensus 91 VPa~aI~~ll~~~ 103 (149)
T COG3019 91 VPAEAIARLLAEK 103 (149)
T ss_pred CCHHHHHHHHhCC
Confidence 9999999988763
No 460
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=46.69 E-value=98 Score=22.83 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=49.9
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHH-HhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502 159 WLVEFFAPWCGHCKNLEPHWEKAAS-ELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT 235 (461)
Q Consensus 159 ~~v~f~~~~c~~c~~~~~~~~~~a~-~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~ 235 (461)
++=.|++...+.+........++-+ .+.+.+.+-.+|..+++++++.++|-..||++=-.+. ...+.-|+++
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-----P~rriiGdls 77 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-----PVRKIIGDLS 77 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-----Ccceeecccc
Confidence 3445666655556666666666554 4456788888999999999999999999997655554 3445567653
No 461
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=45.18 E-value=37 Score=28.88 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=26.2
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCceEEEEE
Q psy17502 162 EFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV 194 (461)
Q Consensus 162 ~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v 194 (461)
+|..|.|+.|-...+.+.++...+...+.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 588999999999999999999999887766554
No 462
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=43.01 E-value=80 Score=26.73 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCCeEEEEEECCCCH-hHHhhHHHHHHHHHHcCC---ceEEEEEecC
Q psy17502 33 SDEVWIVEYYAPWCG-HCQSFKDEYMKLATALKG---VVKVGAVNAD 75 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~-~C~~~~~~~~~~a~~~~~---~v~~~~vd~~ 75 (461)
.+++++|.|.-..|+ -|-.....+.++.+++.. ++.+..|.++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 578999999999996 698888888888887742 4566555554
No 463
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=42.74 E-value=34 Score=29.28 Aligned_cols=28 Identities=29% Similarity=0.624 Sum_probs=25.3
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCC
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKG 65 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~ 65 (461)
+.+|+.+.|+.|-...+.+.++.+++.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6789999999999999999999999843
No 464
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=41.99 E-value=31 Score=27.79 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=23.6
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~ 78 (461)
+..|+.|+|+.|+....-+.+ ..+.+-.+|..+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA------HQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------cCCCeEEEECCCCC
Confidence 457889999999986644432 23667777776543
No 465
>PRK09301 circadian clock protein KaiB; Provisional
Probab=41.97 E-value=1.2e+02 Score=23.17 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=51.4
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHH-HhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502 158 IWLVEFFAPWCGHCKNLEPHWEKAAS-ELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT 235 (461)
Q Consensus 158 ~~~v~f~~~~c~~c~~~~~~~~~~a~-~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~ 235 (461)
.++=.|++...+.+........++-+ .+.+.+.+-.+|..+++++++.++|-..||++=-.+. ...+.-|+++
T Consensus 7 ~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-----P~rriiGDls 80 (103)
T PRK09301 7 YILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-----PVRKIIGDLS 80 (103)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-----Ccceeecccc
Confidence 34556666665556666666666654 4456788888999999999999999999997655544 4445667753
No 466
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=41.31 E-value=20 Score=25.32 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=17.9
Q ss_pred EEEEecCcchhhhhchhHHHHHH
Q psy17502 432 IVEYYAPWCGHCQSFKDEYMKLA 454 (461)
Q Consensus 432 lv~fyapwC~~Ck~l~p~~~~la 454 (461)
+..|+.++|+.|.+.+-..++.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g 24 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG 24 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC
Confidence 34688899999999887766654
No 467
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=39.86 E-value=91 Score=28.20 Aligned_cols=59 Identities=8% Similarity=-0.007 Sum_probs=35.7
Q ss_pred hcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502 31 IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS 96 (461)
Q Consensus 31 ~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 96 (461)
...+++.+++..+-||+.|...+=.+-.+-.++.. +.+..--.+ + .-.-..+|+|.+..
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~--~----~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSD--P----YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecC--c----ccCCCCCCeEEEec
Confidence 35788999999999999998655444444444533 322211111 1 11125689999875
No 468
>PHA03075 glutaredoxin-like protein; Provisional
Probab=39.21 E-value=57 Score=25.37 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=24.9
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe
Q psy17502 157 DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD 195 (461)
Q Consensus 157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~ 195 (461)
+.+++.|..|.|+-|+.......+ +.+++.+.+||
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~----ledeY~ilrVN 36 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKE----LEDEYDILRVN 36 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHH----hhccccEEEEE
Confidence 357899999999999887777644 44455555554
No 469
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=38.08 E-value=42 Score=26.18 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=22.9
Q ss_pred EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc
Q psy17502 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~ 77 (461)
+..|+.|.|..|++...-+++- .+.+-.+|..++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhcC
Confidence 4578899999999866444322 366666776544
No 470
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.22 E-value=3.9e+02 Score=25.72 Aligned_cols=176 Identities=14% Similarity=0.181 Sum_probs=110.4
Q ss_pred CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCC-CCccccCCcchhHH
Q psy17502 35 EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKR-NPTPYQGARTADAI 113 (461)
Q Consensus 35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~-~~~~y~g~~~~~~i 113 (461)
.++.+.-.......++.+..-+.+++.. .+++.+-.. .+ ...-|++.+-+.|. .-.+|-|.--..++
T Consensus 19 ~~i~l~asldds~~s~~~~~ll~eia~~-S~kis~~~~-----~~------~~RkpSF~i~r~g~~~gv~FAglPlGHEf 86 (520)
T COG3634 19 QPIELVASLDDSEKSKEIKELLDEIASL-SDKISLEED-----SD------LVRKPSFSINRPGEDQGVRFAGLPLGHEF 86 (520)
T ss_pred CCeEEEEecCcccccHHHHHHHHHHHhh-ccceeeeec-----Cc------cccCCceeecCCCcccceEEecCcccchH
Confidence 3445555666777888888888888754 344554322 11 24468888888663 44678888777888
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEE
Q psy17502 114 IDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193 (461)
Q Consensus 114 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~ 193 (461)
.+.+...+.-. |. -..+..+-+++.-.-+...-+=-|++-.|..|......+.-.+ -+.++|.-..
T Consensus 87 tSlVLaLlqv~---G~----------ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~ms-vlNp~I~H~~ 152 (520)
T COG3634 87 TSLVLALLQVG---GH----------PPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMS-VLNPRIKHTA 152 (520)
T ss_pred HHHHHHHHHhc---CC----------CCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHH-hcCCCceeEE
Confidence 88776654311 11 0123333334332235567777888888999977776665544 4557888888
Q ss_pred EeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL 244 (461)
Q Consensus 194 v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~ 244 (461)
+|....++-.+.-+|...|++++ +| +. .=+|.++.++|..-|-
T Consensus 153 IdGa~Fq~Evear~IMaVPtvfl--nG----e~--fg~GRmtleeilaki~ 195 (520)
T COG3634 153 IDGALFQDEVEARNIMAVPTVFL--NG----EE--FGQGRMTLEEILAKID 195 (520)
T ss_pred ecchhhHhHHHhccceecceEEE--cc----hh--hcccceeHHHHHHHhc
Confidence 88665555556668889999766 33 11 1257788888766553
No 471
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=36.91 E-value=42 Score=27.67 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=25.3
Q ss_pred CccEEEEEecCcchhhhhchhHHHHHHHHHhhh
Q psy17502 428 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKVY 460 (461)
Q Consensus 428 ~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~~ 460 (461)
+|-+||.--|+-||. .|.|+.|...|+.|
T Consensus 25 GkVlLIVNtASkCGf----TpQYegLe~Ly~ky 53 (162)
T COG0386 25 GKVLLIVNTASKCGF----TPQYEGLEALYKKY 53 (162)
T ss_pred CcEEEEEEcccccCC----cHhHHHHHHHHHHH
Confidence 677888888999997 89999999988876
No 472
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=35.88 E-value=59 Score=28.19 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=32.0
Q ss_pred chhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHH
Q psy17502 77 EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE 119 (461)
Q Consensus 77 ~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~ 119 (461)
+|.+.++|+|+.+|++++... .......|..+...-.+.+..
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEEecccHHHHHHHHHh
Confidence 589999999999999999754 344566788877666655543
No 473
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=35.21 E-value=1.4e+02 Score=20.22 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=30.7
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC----chhhHhhcCCCCccEEEE
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE----EKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~~ 94 (461)
.+|+.+.|+.|++.+-.+... +-.+....+|... .+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL----GIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc----CCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 467889999999766444332 1134555555432 233444444567899864
No 474
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=35.16 E-value=56 Score=25.20 Aligned_cols=69 Identities=14% Similarity=0.327 Sum_probs=38.9
Q ss_pred EECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCC--ccE-EEEEcCCCCCccccCCcchhHH
Q psy17502 41 YYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTG--FPT-VKIFSDKRNPTPYQGARTADAI 113 (461)
Q Consensus 41 f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~P~-l~~~~~g~~~~~y~g~~~~~~i 113 (461)
||..+|+-|......+.+... .+.+.|.-+.-....++.+.+++.. .-+ +.+..+|+ ..|.|......+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~~~G~~A~~~l 73 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE--RVYRGSDAVLRL 73 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC--EEEEcHHHHHHH
Confidence 789999999988776665521 2346665443334444556777653 333 33334554 235554444333
No 475
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=33.50 E-value=76 Score=27.53 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=32.8
Q ss_pred ccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245 (461)
Q Consensus 198 ~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 245 (461)
-++.+.++|+|..+|++++.-.. .+....|..+...-.+.+..
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~-----~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQ-----GYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCC-----CCCEEEecccHHHHHHHHHh
Confidence 36889999999999999997543 44556788888776666654
No 476
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=32.92 E-value=1.6e+02 Score=23.89 Aligned_cols=64 Identities=13% Similarity=0.258 Sum_probs=46.0
Q ss_pred cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCc-cEEEEEcC
Q psy17502 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGF-PTVKIFSD 97 (461)
Q Consensus 32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~-P~l~~~~~ 97 (461)
+.+++-+|.+|...|.-|.....-+.+.- -.+.+.|+.+.......+.+..++..- +-.+++..
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~ 68 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVE 68 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhhHHhhcCCChhhhheeeEec
Confidence 45678899999999999998554444332 235699999998888888888887653 55555543
No 477
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.45 E-value=41 Score=30.23 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.0
Q ss_pred ccEEEEEecCcchhhhhchhHHHHH
Q psy17502 429 EVWIVEYYAPWCGHCQSFKDEYMKL 453 (461)
Q Consensus 429 kdvlv~fyapwC~~Ck~l~p~~~~l 453 (461)
+-++++|+.+-|+||++..|..++.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~ 109 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKK 109 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHH
Confidence 6689999999999998888777763
No 478
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=30.58 E-value=84 Score=27.96 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=40.5
Q ss_pred eEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC----ceEEEEEecC
Q psy17502 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG----VVKVGAVNAD 75 (461)
Q Consensus 19 ~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~----~v~~~~vd~~ 75 (461)
..+++.+--. -..+.+++|-+-..+|..|..-...++.+-.+|.. +|.|..||--
T Consensus 13 W~i~~~~pm~--~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 13 WKIGGQDPML--NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred ceECCchHhh--hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 4444443332 23557889999999999999988999888887753 4889888854
No 479
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.08 E-value=57 Score=28.11 Aligned_cols=35 Identities=14% Similarity=0.376 Sum_probs=25.7
Q ss_pred hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502 79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 79 ~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i 117 (461)
+.+.+.||.++|++++ +|+ ....|..+.+.+.+-|
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHh
Confidence 4677889999999988 443 2357888887776644
No 480
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=28.83 E-value=79 Score=24.61 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=23.4
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~ 77 (461)
..|+.|.|..|++...-+++. .+.+-.+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 478899999999977655542 355666776554
No 481
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=28.33 E-value=22 Score=30.68 Aligned_cols=11 Identities=27% Similarity=0.776 Sum_probs=9.1
Q ss_pred cCcchhhhhch
Q psy17502 437 APWCGHCQSFK 447 (461)
Q Consensus 437 apwC~~Ck~l~ 447 (461)
-.-|+|||+|+
T Consensus 195 ErPClHCKAmR 205 (243)
T PF15468_consen 195 ERPCLHCKAMR 205 (243)
T ss_pred cccchhhHHHH
Confidence 46799999986
No 482
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.11 E-value=1.1e+02 Score=32.00 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=58.4
Q ss_pred eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhH-HHH--HHHHHhcCceEEEEEeCcccHhhhhhcC--------c
Q psy17502 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP-HWE--KAASELEGKVKLGAVDATVHQRIAGEFN--------I 208 (461)
Q Consensus 140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~~--~~a~~~~~~i~f~~v~~~~~~~l~~~~~--------i 208 (461)
-..-..+.|.+. ...++|+++..-..||..|.-+.. .|+ ++|..+...+.-++||-++-+++-+.|. -
T Consensus 28 W~pW~~eAf~~A-~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~ 106 (667)
T COG1331 28 WYPWGEEAFAKA-KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQ 106 (667)
T ss_pred ccccCHHHHHHH-HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccC
Confidence 344578888875 578899999999999999987754 454 4888888888888998777666544442 4
Q ss_pred ccccEEEEEcCC
Q psy17502 209 RGYPTIKFFSPG 220 (461)
Q Consensus 209 ~~~P~i~~~~~~ 220 (461)
.++|--++..+.
T Consensus 107 GGWPLtVfLTPd 118 (667)
T COG1331 107 GGWPLTVFLTPD 118 (667)
T ss_pred CCCceeEEECCC
Confidence 468866666654
No 483
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=27.94 E-value=79 Score=24.83 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.7
Q ss_pred EEEEECCCCHhHHhhHHHHH
Q psy17502 38 IVEYYAPWCGHCQSFKDEYM 57 (461)
Q Consensus 38 lv~f~~~~c~~C~~~~~~~~ 57 (461)
+..|+.|.|+.|+....-++
T Consensus 3 itiy~~p~C~t~rka~~~L~ 22 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLE 22 (117)
T ss_pred EEEEeCCCChHHHHHHHHHH
Confidence 56788999999998775544
No 484
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=27.62 E-value=98 Score=24.81 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=15.3
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q psy17502 160 LVEFFAPWCGHCKNLEPHWEK 180 (461)
Q Consensus 160 ~v~f~~~~c~~c~~~~~~~~~ 180 (461)
+..|+.++|+.|+.....+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456788999999886655444
No 485
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=27.01 E-value=31 Score=18.54 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=18.4
Q ss_pred chhhhhchhHHHHHHHHHhhhC
Q psy17502 440 CGHCQSFKDEYMKLATALKVYC 461 (461)
Q Consensus 440 C~~Ck~l~p~~~~la~~~k~~~ 461 (461)
|..|.+.-+....|-+..+.||
T Consensus 4 C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 4 CDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp ETTTTEEESSHHHHHHHHCTTT
T ss_pred CCccCCccCChhHHHHHhHHhc
Confidence 8889998888888888887764
No 486
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=26.46 E-value=2.3e+02 Score=19.71 Aligned_cols=51 Identities=12% Similarity=-0.120 Sum_probs=31.6
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC----chhhHhhcCCCCccEEE
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE----EKSLSSSHGVTGFPTVK 93 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~ 93 (461)
..|+.+.|+.|++.+-.+. +.+-.+.+..+|... .+++.+...-..+|+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~----e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIA----EKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHH----HcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 5678889999977653222 222246666676532 23465555667799985
No 487
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=26.32 E-value=62 Score=27.60 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=0.0
Q ss_pred CchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502 76 EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA 117 (461)
Q Consensus 76 ~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i 117 (461)
++.+.+.+.||.++|++++ +|+ .+-|....+.+...+
T Consensus 155 ~~~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 155 ANTEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
No 488
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=26.15 E-value=70 Score=24.80 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=22.5
Q ss_pred EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc
Q psy17502 39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77 (461)
Q Consensus 39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~ 77 (461)
..|+.|.|..|++...-+++. .+.+-.+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccC
Confidence 578899999999976444432 355666776544
No 489
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=25.78 E-value=2.6e+02 Score=21.57 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=34.5
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE 76 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~ 76 (461)
+++++||.=.|..|+.-. -...++++.+++++ .+.+...=|..
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 568899999999999998 56699999999975 36676666754
No 490
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=24.82 E-value=93 Score=23.92 Aligned_cols=45 Identities=13% Similarity=0.370 Sum_probs=28.7
Q ss_pred EeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcc
Q psy17502 163 FFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIR 209 (461)
Q Consensus 163 f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~ 209 (461)
||...|+-|......+.+.. -.+.+.|..+......++...++++
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--~~~~l~~~~~~~~~~~~~~~~~~~~ 46 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--RGGRLRFVDIQSEPDQALLASYGIS 46 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--CCCCEEEEECCChhhhhHHHhcCcC
Confidence 68899999988777666652 1246777766333344445566665
No 491
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=24.33 E-value=1.6e+02 Score=23.34 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=32.4
Q ss_pred ceEEEEEecCCchh----------hHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502 66 VVKVGAVNADEEKS----------LSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI 121 (461)
Q Consensus 66 ~v~~~~vd~~~~~~----------l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~ 121 (461)
.+.+.+.|...++. +-++.|...+|.+++ +| .+.....+-+.++|.+|+.-..
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dG-eiv~~G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DG-EIVKTGRYPTNEELAEWLGISF 102 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TT-EEEEESS---HHHHHHHHT--G
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CC-EEEEecCCCCHHHHHHHhCCCc
Confidence 49999999998874 445668999998776 44 4445555678889999886544
No 492
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=3.8e+02 Score=22.29 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=33.0
Q ss_pred CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC
Q psy17502 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE 76 (461)
Q Consensus 33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~ 76 (461)
.++++||-=.|+.|+.--++ ..++.+.++++++ +.+..+-|+.
T Consensus 24 ~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred CCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccc
Confidence 67899999999999987754 4778888888764 6666666653
No 493
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=23.73 E-value=47 Score=26.74 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=10.4
Q ss_pred CCHhHHhhHHHHH
Q psy17502 45 WCGHCQSFKDEYM 57 (461)
Q Consensus 45 ~c~~C~~~~~~~~ 57 (461)
=||+||++.-||.
T Consensus 87 PCG~CRQ~i~Ef~ 99 (134)
T COG0295 87 PCGACRQVLAEFC 99 (134)
T ss_pred CcHHHHHHHHHhc
Confidence 4999999887664
No 494
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=23.06 E-value=99 Score=26.99 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=24.2
Q ss_pred HHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502 56 YMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94 (461)
Q Consensus 56 ~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 94 (461)
+.++.++++.++.| +....|.++|+|+.+|+++-
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~g~Lt~rF~I~~VPavV~ 191 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQHGKLTQKFGIKHVPARVS 191 (202)
T ss_pred HHHHHHHhCCceEE-----cCCchHhhccCceeeceEEE
Confidence 44555555544544 34567999999999999886
No 495
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=3.1e+02 Score=26.29 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=65.2
Q ss_pred eEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502 19 IKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97 (461)
Q Consensus 19 ~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~ 97 (461)
..++.+-.++ +-. ++.+-+=-|++-.|..|-..-..+.-++ -++.+|.-..||..--.+-.+.-+|-.+|++++ +
T Consensus 101 pk~~q~vieq-ik~i~g~~~FETy~SltC~nCPDVVQALN~ms-vlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--n 176 (520)
T COG3634 101 PKEDQDVIEQ-IKAIDGDFHFETYFSLTCHNCPDVVQALNLMS-VLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--N 176 (520)
T ss_pred CchhHHHHHH-HHhcCCceeEEEEEEeeccCChHHHHHHHHHH-hcCCCceeEEecchhhHhHHHhccceecceEEE--c
Confidence 3444555555 322 5567888888999999977666665444 456779999999776665566668999999877 4
Q ss_pred CCCCccccCCcchhHHHHHHH
Q psy17502 98 KRNPTPYQGARTADAIIDVAL 118 (461)
Q Consensus 98 g~~~~~y~g~~~~~~i~~~i~ 118 (461)
|+.. -+|..+.++|..-+.
T Consensus 177 Ge~f--g~GRmtleeilaki~ 195 (520)
T COG3634 177 GEEF--GQGRMTLEEILAKID 195 (520)
T ss_pred chhh--cccceeHHHHHHHhc
Confidence 5332 367888888877554
No 496
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=23.00 E-value=5.8e+02 Score=23.22 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=42.2
Q ss_pred CCCceEcCccchhHHHhcCCCeEEEEEECCC------CHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhh----c
Q psy17502 15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPW------CGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSS----H 84 (461)
Q Consensus 15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~------c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~----~ 84 (461)
.+.+..|++.+-+- +-+=++++-|.+|.+. -..-+.+..-+.+.+..-++++.+-.||.+.+++.+++ +
T Consensus 6 ~~k~ysLS~~T~~~-L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~ 84 (271)
T PF09822_consen 6 ANKRYSLSDQTKKV-LKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEY 84 (271)
T ss_pred CCCCccCCHHHHHH-HHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhc
Confidence 45566676666554 3333345555544443 22333333344444443345899999999777766655 8
Q ss_pred CCCCcc
Q psy17502 85 GVTGFP 90 (461)
Q Consensus 85 ~i~~~P 90 (461)
||...+
T Consensus 85 Gi~~~~ 90 (271)
T PF09822_consen 85 GIQPVQ 90 (271)
T ss_pred CCCccc
Confidence 887744
No 497
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=22.87 E-value=48 Score=24.15 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=35.7
Q ss_pred hhhhhHHHHHHHHH-hcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502 171 CKNLEPHWEKAASE-LEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS 218 (461)
Q Consensus 171 c~~~~~~~~~~a~~-~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~ 218 (461)
+.........+... +.+.+.+-.+|..++++++..++|-..||++--.
T Consensus 11 s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~~ 59 (82)
T PF07689_consen 11 SERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIKES 59 (82)
T ss_dssp HHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEeecc
Confidence 34445556666554 3467999999999999999999998889875433
No 498
>KOG1364|consensus
Probab=22.82 E-value=1.6e+02 Score=27.83 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=48.6
Q ss_pred ceEEEEEecCCchhhHhhcCCCCccEEEEEc--CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502 66 VVKVGAVNADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGARTADAIIDVALEAIRQK 124 (461)
Q Consensus 66 ~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~--~g~~~~~y~g~~~~~~i~~~i~~~~~~~ 124 (461)
...++..|..+...+..-|.+...|.+.++. .|+...+..|...+.+++.-+++.+..-
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~ 192 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSC 192 (356)
T ss_pred eEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcC
Confidence 3666677788888899999999999888887 6778888889988999998888887543
No 499
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=22.82 E-value=3.8e+02 Score=20.98 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHhccCcc-eEEEecccccch-----------hHHHhhCCCCCCCccEEEEccCccccccCCCCCCHH
Q psy17502 290 CRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQP-----------DLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYD 357 (461)
Q Consensus 290 ~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~-----------~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~ 357 (461)
......+.+.+....+..+- ..++.++..... .+.+.|+++... -.++++..++..-..+...++.+
T Consensus 24 ~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~-f~~vLiGKDG~vK~r~~~p~~~~ 102 (118)
T PF13778_consen 24 RYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGG-FTVVLIGKDGGVKLRWPEPIDPE 102 (118)
T ss_pred HHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCc-eEEEEEeCCCcEEEecCCCCCHH
Confidence 34556666666555555443 233333333333 788889988544 45566665553222246678999
Q ss_pred HHHHHHHHH
Q psy17502 358 GINEFLRDL 366 (461)
Q Consensus 358 ~i~~Fi~~~ 366 (461)
.|-..|...
T Consensus 103 ~lf~~ID~M 111 (118)
T PF13778_consen 103 ELFDTIDAM 111 (118)
T ss_pred HHHHHHhCC
Confidence 998888764
No 500
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=22.51 E-value=3.4e+02 Score=20.30 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=44.1
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT 235 (461)
Q Consensus 156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~ 235 (461)
+++.++.|..+. ..|.++....+++|.. .+++.+-..+.. - ..|++.+..++. ....+|.|--.
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~l-SdkI~~~~~~~~----------~-~~P~~~i~~~~~---~~gIrF~GiP~ 82 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASL-SDKITLEEDNDD----------E-RKPSFSINRPGE---DTGIRFAGIPM 82 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHh-CCceEEEEecCC----------C-CCCEEEEecCCC---cccEEEEecCC
Confidence 455566666554 6788887777777754 356666432211 0 359999987662 24577877544
Q ss_pred HHHHHHHHH
Q psy17502 236 SQDIVTWAL 244 (461)
Q Consensus 236 ~~~i~~fi~ 244 (461)
-.++..||.
T Consensus 83 GhEf~Slil 91 (94)
T cd02974 83 GHEFTSLVL 91 (94)
T ss_pred chhHHHHHH
Confidence 455666654
Done!