RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17502
(461 letters)
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 273 bits (698), Expect = 7e-84
Identities = 79/364 (21%), Positives = 146/364 (40%), Gaps = 39/364 (10%)
Query: 9 HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
S V L NF E W+V+++APW ++ E K +T L G +K
Sbjct: 433 FAKESVNSHVTTLGPQNFPAS---DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLK 489
Query: 69 VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGG 128
VG ++ + L + + + +PT +F ++ + Y+G +A+ I++
Sbjct: 490 VGTLDCTIHEGLCNMYNIQAYPTTVVF-NQSSIHEYEGHHSAEQILEFI----------- 537
Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYN--SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE 186
+ +VV LT S F +LV D++W+V+F++PW + L P W++ A L
Sbjct: 538 ----EDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593
Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQDIVTWALN 245
G + +G+VD + + N++ YP I+F+ S A YNG R + + +W L
Sbjct: 594 GLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLG 653
Query: 246 KYTENVPPPEIKQIVSEATFKEACEDHPLCIVAV-LPHILDCQSSCRNNYLEILQKLGDK 304
P + + ++ + +V P Q N+ + L
Sbjct: 654 F-----LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQ-----NFAPEFELLARM 703
Query: 305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLK---GPFSYDGINE 361
K KV + Q + + G YP++ + ++ K S+ + I
Sbjct: 704 IKGKV---RAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAA 760
Query: 362 FLRD 365
+
Sbjct: 761 LIYG 764
Score = 245 bits (625), Expect = 2e-73
Identities = 72/453 (15%), Positives = 142/453 (31%), Gaps = 78/453 (17%)
Query: 9 HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
I D + S E+W V +Y+P H + + A + G+++
Sbjct: 108 DFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLR 167
Query: 69 VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGG 128
+GAVN +++ L GV +P++ IF Y G R+ ++++ A++ +R
Sbjct: 168 IGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRS----- 222
Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWE--KAASELE 186
V EL+ NF + + V + +C ++ + + L+
Sbjct: 223 ----------TVTELSTGNFVNAI-ETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLD 271
Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
G V +G VD + + T F + A
Sbjct: 272 GLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGA-----TLNDREKSSVLFLNSLDAKEI 326
Query: 247 YTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYK 306
Y E + +++S ++ H + + L+KL K
Sbjct: 327 YMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENAND-------PELKKLKTLLK 379
Query: 307 QKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMK-YSLLKGPFSYDGINEFLRD 365
+ + + + P + + L + P++AV + K Y + G I F +
Sbjct: 380 NEHIQVVRFDCSSAPGICSDLYV---FQPSLAVFKGQGTKEYEIHHGKKILYDILAFAK- 435
Query: 366 LSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVI 425
+ + + L F
Sbjct: 436 --------------------------------------ESVNSHVTTLGPQNFP-----A 452
Query: 426 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
E W+V+++APW ++ E K +T L
Sbjct: 453 SDKEPWLVDFFAPWSPPSRALLPELRKASTLLY 485
Score = 231 bits (590), Expect = 2e-68
Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 16/250 (6%)
Query: 16 SDVIKLTTSNFDDKVI--KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
V+ LT S F++ V K DEVW+V++Y+PW Q E+ ++A L G++ VG+V+
Sbjct: 543 PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVD 602
Query: 74 ADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGG 132
+ S + V +P ++ + Y + +
Sbjct: 603 CGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP------ 656
Query: 133 RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLG 192
+A ++LT F + V W+V+F+APW G +N P +E A ++GKV+ G
Sbjct: 657 -----QASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAG 711
Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP 252
VD + + + I+ YP++K + S +E R ++ I K
Sbjct: 712 KVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET--L 769
Query: 253 PPEIKQIVSE 262
++K+ E
Sbjct: 770 QSQVKRNKDE 779
Score = 222 bits (566), Expect = 6e-65
Identities = 85/450 (18%), Positives = 159/450 (35%), Gaps = 78/450 (17%)
Query: 12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVG 70
+ D L+ + +D++ + + + + E KL T LK ++V
Sbjct: 331 IHNLPDFELLSANQLEDRLAHHR----WLVFFHFGKNENANDPELKKLKTLLKNEHIQVV 386
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSDKRN--PTPYQGARTADAIIDVALEAIRQKVKGG 128
+ + S V P++ +F + + G + I+ A E+
Sbjct: 387 RFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKILYDILAFAKES-------- 437
Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK 188
+ V L NF + + WLV+FFAPW + L P KA++ L G+
Sbjct: 438 -------VNSHVTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ 487
Query: 189 VKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT 248
+K+G +D T+H+ + +NI+ YPT F+ S EY G +++ I+ +
Sbjct: 488 LKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSI-----HEYEGHHSAEQILEFI----- 537
Query: 249 ENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQK 308
E++ P + + + + + V + S + +++
Sbjct: 538 EDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPS--QVLMPEWKRMARTLTGL 595
Query: 309 VWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSY 368
+ + + YP + K K + Y N + RD
Sbjct: 596 I-NVGSVDCGQYHSFCTQENVQ--RYPEIRFYPQKSSK------AYQYHSYNGWNRDAYS 646
Query: 369 GRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSD 428
+ +W G LPQ F++KV++
Sbjct: 647 ------------------LRSW--GLGFLPQASIDLTPQ-----------TFNEKVLQGK 675
Query: 429 EVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
W+V++YAPW G Q+F E+ LA +K
Sbjct: 676 THWVVDFYAPWSGPSQNFAPEFELLARMIK 705
Score = 158 bits (400), Expect = 5e-42
Identities = 79/447 (17%), Positives = 147/447 (32%), Gaps = 79/447 (17%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK--DEYMKLATALKGVVKVGAVN 73
S V +L+T NF I++ V + +C + ++L+ L G+V VG V+
Sbjct: 222 STVTELSTGNFV-NAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVD 280
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGR 133
D + SL S T T + + +D + I ++
Sbjct: 281 CDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDA--KEIYMEIIHNLPDFE 338
Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL-EGKVKLG 192
S+ + + + WLV F + + +P +K + L +++
Sbjct: 339 LLSANQLED----------RLAHHRWLVFFH--FGKNENANDPELKKLKTLLKNEHIQVV 386
Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP 252
D + I + + P++ F + + ++G + DI+ +A +V
Sbjct: 387 RFDCSSAPGICSDLYVF-QPSLAVFKGQG--TKEYEIHHGKKILYDILAFAKESVNSHV- 442
Query: 253 PPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGW 312
+ F + + P + P + L L+K ++
Sbjct: 443 -----TTLGPQNFPAS-DKEPWLVDFFAPWSPPSR-----ALLPELRKASTLLYGQL-KV 490
Query: 313 IWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFLRDLSYGRG 371
+ L N+ I YP V N + +Y +G S + I EF+ DL
Sbjct: 491 GTLDCTIHEGLCNMYNI--QAYPTTVVFNQSSIHEY---EGHHSAEQILEFIEDLR---- 541
Query: 372 HTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVW 431
+ + L FN K K DEVW
Sbjct: 542 -----------------------------------NPSVVSLTPSTFNELVKQRKHDEVW 566
Query: 432 IVEYYAPWCGHCQSFKDEYMKLATALK 458
+V++Y+PW Q E+ ++A L
Sbjct: 567 MVDFYSPWSHPSQVLMPEWKRMARTLT 593
Score = 130 bits (328), Expect = 1e-32
Identities = 63/371 (16%), Positives = 109/371 (29%), Gaps = 61/371 (16%)
Query: 88 GFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSN 147
+ +K D R G + + G ++ L
Sbjct: 70 AYEVLKDE-DLRKKYDKYGEKGLEDNQG---GQYESWSYYRYDFGIYDDDPEIITLERRE 125
Query: 148 FEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFN 207
F+ V NS ++W V F++P H +L P W + A E++G +++GAV+ + +
Sbjct: 126 FDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKG 184
Query: 208 IRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKE 267
+ YP++ F G + +YNG R+ + +V +A+ V +S F
Sbjct: 185 VNSYPSLFIFRSGMAA----VKYNGDRSKESLVAFAMQHVRSTVT------ELSTGNFVN 234
Query: 268 ACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVL 327
A E V I C + +L V W + AQ L L
Sbjct: 235 AIETAF--AAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLV-NVGWVDCDAQDSLCKSL 291
Query: 328 EIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQV 387
+ A K + +
Sbjct: 292 DTTA---STTAYFPPGATLNDREKSSVLFLNSLDAK------------------------ 324
Query: 388 DAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFK 447
E+ E +L D +L + E + + + +
Sbjct: 325 --------EIYMEIIHNLPDFELLSANQLEDRLAHH--------RWLVFFHFGKNENAND 368
Query: 448 DEYMKLATALK 458
E KL T LK
Sbjct: 369 PELKKLKTLLK 379
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 247 bits (633), Expect = 3e-80
Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 22/237 (9%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAV 72
+ V+ L +NFD+ + + ++E+YAPWCGHC+ F EY K+A LK + V +
Sbjct: 15 NGVLVLNDANFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGG 132
+A L+S V+G+PT+KI Y+G+RT + I+ E +
Sbjct: 74 DATSASVLASRFDVSGYPTIKILKKG-QAVDYEGSRTQEEIVAKVREVSQPDWTPPPE-- 130
Query: 133 RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---V 189
+ LT NF+++V N DI LVEF+APWCGHCK L P +EKAA EL + +
Sbjct: 131 ------VTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPI 183
Query: 190 KLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
L VDAT +A F++ GYPT+K F G +YNG R IV + + +
Sbjct: 184 PLAKVDATAETDLAKRFDVSGYPTLKIFRKG-----RPYDYNGPREKYGIVDYMIEQ 235
Score = 162 bits (411), Expect = 3e-47
Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 18/237 (7%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLG 192
V+ L D+NF+ V D L+EF+APWCGHCK P +EK A+ L+ K + +
Sbjct: 13 EENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVA 71
Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP 252
+DAT +A F++ GYPTIK G A +Y G RT ++IV +
Sbjct: 72 KIDATSASVLASRFDVSGYPTIKILKKG-----QAVDYEGSRTQEEIVAKVREVSQPDWT 126
Query: 253 -PPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWG 311
PPE+ ++++ F E D + +V Y + ++L +
Sbjct: 127 PPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA 186
Query: 312 WIWSEAVAQPDLENVLEIGGFGYPAMAVL-NAKKMKYSLLKGPFSYDGINEFLRDLS 367
+ +A A+ DL ++ GYP + + + Y+ GP GI +++ + S
Sbjct: 187 KV--DATAETDLAKRFDVS--GYPTLKIFRKGRPYDYN---GPREKYGIVDYMIEQS 236
Score = 109 bits (273), Expect = 1e-27
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKV 69
P + LT NFD +V+ ++ +VE+YAPWCGHC+ EY K A L + +
Sbjct: 127 PPPEVTLVLTKENFD-EVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPL 185
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
V+A E L+ V+G+PT+KIF R P Y G R I+D
Sbjct: 186 AKVDATAETDLAKRFDVSGYPTLKIFRKGR-PYDYNGPREKYGIVD 230
Score = 66.4 bits (162), Expect = 1e-12
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 395 GELPQEEDIDLSDV-DLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKL 453
G L E+D+++ + + L F D + + ++E+YAPWCGHC+ F EY K+
Sbjct: 1 GPLGSEDDLEVKEENGVLVLNDANF---DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKI 57
Query: 454 ATALK 458
A LK
Sbjct: 58 ANILK 62
Score = 57.5 bits (139), Expect = 1e-09
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 39/127 (30%)
Query: 333 GYPAMAVL-NAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWD 391
GYP + +L + + Y G + + I +R+
Sbjct: 89 GYPTIKILKKGQAVDYE---GSRTQEEIVAKVRE------------------------VS 121
Query: 392 GKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYM 451
D P E + L+ + D+V+ ++ +VE+YAPWCGHC+ EY
Sbjct: 122 QPDWTPPPEVTLVLTKENF-----------DEVVNDADIILVEFYAPWCGHCKKLAPEYE 170
Query: 452 KLATALK 458
K A L
Sbjct: 171 KAAKELS 177
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 240 bits (612), Expect = 3e-74
Identities = 97/452 (21%), Positives = 163/452 (36%), Gaps = 61/452 (13%)
Query: 16 SDVIKLTTSNFDDKV--IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
SDV++LT NF+ ++ S + +VE++APWCGH + EY AT LKG+V + V+
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGR 133
+ + +GV+G+PT+KIF D Y G RTAD I+ +
Sbjct: 61 CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHL---------------K 105
Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
K + A V L K + D +V FF + + KAAS L +
Sbjct: 106 KQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHS---EFLKAASNLRDNYRFAH 162
Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY---NGGRTSQDIVTWALNKYTEN 250
+ + + E++ G I F + + + TS I +
Sbjct: 163 TNV---ESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGI 219
Query: 251 VPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSC---RNNYLEILQKLGDKYKQ 307
P ++E + L I RN + + +K D +
Sbjct: 220 CPH------MTEDNKDL-IQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHK 272
Query: 308 KVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLL-KGPFSYDGINEFLRDL 366
+ + + + LE P +A+ AK K+ + + + FL+D
Sbjct: 273 LNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDY 332
Query: 367 SYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIK 426
G + NFD+ V
Sbjct: 333 FDGNLKRYLKSEPIPESNDGPVKVV------------------------VAENFDEIVNN 368
Query: 427 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
++ ++E+YAPWCGHC++ + +Y +L L
Sbjct: 369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLS 400
Score = 145 bits (367), Expect = 9e-39
Identities = 53/252 (21%), Positives = 96/252 (38%), Gaps = 24/252 (9%)
Query: 37 WIVEYYAPWCGHC----QSFKDEYMKLATALKG-------VVKVGAVNADEEKSLSSSHG 85
++ YY +++ M +A V + E
Sbjct: 236 LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLEST 295
Query: 86 VTGFPTVKIFSD--KRNPTPYQGARTADAIIDVA--LEAIRQKVKGGKSGGRKGSSKAVV 141
P V I + ++ + +R A+ K + + V
Sbjct: 296 AGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVK 355
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVH 199
+ NF+++V N + L+EF+APWCGHCKNLEP +++ +L + + +DAT +
Sbjct: 356 VVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN 415
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQI 259
+ + +RG+PTI F + + ++Y GGR D +++ P + Q
Sbjct: 416 D-VPSPYEVRGFPTIYFSPANKK--LNPKKYEGGRELSDFISYL----QREATNPPVIQE 468
Query: 260 VSEATFKEACED 271
K+A ED
Sbjct: 469 EKPKKKKKAQED 480
Score = 96.9 bits (240), Expect = 9e-22
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV--VKV 69
+ V + NFD+ V ++ ++E+YAPWCGHC++ + +Y +L L + +
Sbjct: 348 ESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVI 407
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGARTADAIID 115
++A + S + V GFPT+ K NP Y+G R I
Sbjct: 408 AKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFIS 454
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 209 bits (533), Expect = 1e-63
Identities = 65/405 (16%), Positives = 138/405 (34%), Gaps = 54/405 (13%)
Query: 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK------GV 66
P S++ L T N D+ ++ + +V +V +YA WC Q + + + +K
Sbjct: 2 PLGSEITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQ 60
Query: 67 VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQKV 125
V V+ D+ ++ + ++ +PT+K+F + Y+G R+ A+ D
Sbjct: 61 VVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYI-------- 112
Query: 126 KGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL 185
R+ S + E+ D + ++ +F + +E+ A+ L
Sbjct: 113 -------RQQKSDPIQEIRDLAEIT-TLDRSKRNIIGYFE---QKDSDNYRVFERVANIL 161
Query: 186 EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQD-IVTWAL 244
+ V + I + PG ++ Y G T+ D W
Sbjct: 162 HDDCAFLSAFGDVS-----KPERYSGDNIIYKPPG--HSAPDMVYLGAMTNFDVTYNWIQ 214
Query: 245 NKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDK 304
+K P +++I E + E P I+ + + + + +
Sbjct: 215 DKCV-----PLVREITFENGEELTEEGLPFLILFHMKE----DTESLEIFQNEVARQLIS 265
Query: 305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFL 363
K + ++ ++ ++ P +A+ + + M + K + +F+
Sbjct: 266 EKGTIN-FLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFV 324
Query: 364 RDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDV 408
DL G+ H P D GE Q+ +
Sbjct: 325 FDLHSGKLH-REFHHGPDP-------TDTAPGEQAQDVASSPPES 361
Score = 62.7 bits (152), Expect = 7e-11
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
N D+ ++ + +V +V +YA WC Q + + + +K
Sbjct: 14 NIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIK 52
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 193 bits (492), Expect = 3e-59
Identities = 38/250 (15%), Positives = 77/250 (30%), Gaps = 23/250 (9%)
Query: 6 ASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG 65
+ + LY + L V+ S W VE++A WCGHC +F + LA +K
Sbjct: 2 SHMSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKA 61
Query: 66 ---VVKVGAVNADEE--KSLSSSHGVTGFPTVKIF----SDKRNPTPYQGARTADAIIDV 116
+ + A++ EE ++ + GFPTV+ F + + +
Sbjct: 62 WRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRER 121
Query: 117 ALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP 176
++A+ + N+++ + F + +
Sbjct: 122 LIDALESHHDTWP----PACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVAL 177
Query: 177 HWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTS 236
+ V + V T + +F + +P+ S
Sbjct: 178 DLSQ-----HKGVAVRRVLNT-EANVVRKFGVTDFPSCYLLFRNGS----VSRVPVLMES 227
Query: 237 QDIVTWALNK 246
+ T L +
Sbjct: 228 RSFYTAYLQR 237
Score = 158 bits (401), Expect = 8e-46
Identities = 48/244 (19%), Positives = 84/244 (34%), Gaps = 26/244 (10%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLG 192
S + L V S W VEFFA WCGHC P W A +++ + L
Sbjct: 10 PSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLA 69
Query: 193 AVDAT--VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN----- 245
A+D + + +FNI G+PT++FF + + S A G Q + ++
Sbjct: 70 ALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESH 129
Query: 246 --KYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGD 303
+ PP E + F + L ++ R L++ Q G
Sbjct: 130 HDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXG----GSYLAREVALDLSQHKGV 185
Query: 304 KYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFL 363
++ + ++ + +P+ +L + S +L
Sbjct: 186 AVRRV--------LNTEANVVRKFGVT--DFPSCYLLFRNGSVSRVPVLMESRSFYTAYL 235
Query: 364 RDLS 367
+ LS
Sbjct: 236 QRLS 239
Score = 73.9 bits (181), Expect = 4e-15
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
V+ S W VE++A WCGHC +F + LA +K
Sbjct: 21 TVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVK 60
Score = 29.6 bits (66), Expect = 1.9
Identities = 2/43 (4%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 411 EDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKL 453
++ F + ++E + + + + +
Sbjct: 142 PAXLEEIDGFFAR--NNEEYLALIFEXGGSYLAREVALDLSQH 182
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 199 bits (506), Expect = 2e-58
Identities = 86/454 (18%), Positives = 153/454 (33%), Gaps = 62/454 (13%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKV 69
+ P S V+KL T +F++ I+S ++ + E++APWCGHC++ EY+K A L + +
Sbjct: 9 VAPEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITL 67
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIIDVALEAIRQKVKG 127
++ E + L H + GFP++KIF SD N Y+G RTA+AI+ ++ + V
Sbjct: 68 AQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAV 127
Query: 128 GKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG 187
+ L + F V +F A + ++ ++E
Sbjct: 128 --------VADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAE--- 176
Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
+ + D K+
Sbjct: 177 ------------------NADDDFKLSIYLPSAMDEPVVYNGKKADIADAD----VFEKW 214
Query: 248 TENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQ 307
+ P +I + PL + Y + +L K +
Sbjct: 215 LQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDE------EELEEYKPLFTELAKKNRG 268
Query: 308 KVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL---LKGPFSYDGINEFLR 364
+ ++ +A L + + +KY L + F L
Sbjct: 269 LM-NFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLE 327
Query: 365 DLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKV 424
+ +KG A P + + ++ +D + Q N D+ V
Sbjct: 328 SKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQL---------------VGKNHDEIV 372
Query: 425 IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+ +V YYAPWCGHC+ Y +LA
Sbjct: 373 NDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYA 406
Score = 176 bits (446), Expect = 9e-50
Identities = 53/277 (19%), Positives = 103/277 (37%), Gaps = 26/277 (9%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
++ S F + + + + +K + +LA +G++ +++A +
Sbjct: 223 FGEIDGSVFAQ--YVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKF 280
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID-------VALEAIRQKVKGGKS 130
+ + + + D Y + ++ D + +AI VK
Sbjct: 281 GRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK 340
Query: 131 GGRKGSSK----------AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK 180
G K +V +L N +++V + LV ++APWCGHCK L P +++
Sbjct: 341 GDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQE 400
Query: 181 AASEL---EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A V + +D T + I GYPTI + G + S++ Y G R+
Sbjct: 401 LADTYANATSDVLIAKLDHTEND--VRGVVIEGYPTIVLYPGGKK--SESVVYQGSRSLD 456
Query: 238 DIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPL 274
+ + +V + + E +EA D L
Sbjct: 457 SLFDFIKENGHFDVDGKALYEEAQEKAAEEADADAEL 493
Score = 150 bits (379), Expect = 3e-40
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL-EG 187
+ AVV+L +F + + S D+ L EFFAPWCGHCKN+ P + KAA L E
Sbjct: 5 QQEAVAPEDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK 63
Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
+ L +D T +Q + E NI G+P++K F +++ +Y G RT++ IV + + +
Sbjct: 64 NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDV--NNSIDYEGPRTAEAIVQFMIKQ- 120
Query: 248 TENVPPPEIKQIVSEATFKEACEDHPLCIV 277
P + + + IV
Sbjct: 121 ----SQPAVAVVADLPAYLANETFVTPVIV 146
Score = 108 bits (269), Expect = 2e-25
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 7/141 (4%)
Query: 15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGA 71
S V +L N D+ V + +V YYAPWCGHC+ Y +LA V +
Sbjct: 357 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAK 416
Query: 72 VNADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGARTADAIIDVALEAIRQKVKGGK 129
++ E + G+PT+ ++ K YQG+R+ D++ D E V G
Sbjct: 417 LDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKA 474
Query: 130 SGGRKGSSKAVVELTDSNFEK 150
A D+
Sbjct: 475 LYEEAQEKAAEEADADAELAD 495
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 185 bits (471), Expect = 2e-57
Identities = 72/136 (52%), Positives = 96/136 (70%), Gaps = 8/136 (5%)
Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL----EG 187
G GSS V+ELTD +F+K V +S+D+W+VEF+APWCGHCKNLEP W AASE+ +G
Sbjct: 1 GSSGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG 60
Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
KVKL AVDATV+Q +A + IRG+PTIK F G +Y+GGRT DIV+ AL+ +
Sbjct: 61 KVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGES----PVDYDGGRTRSDIVSRALDLF 116
Query: 248 TENVPPPEIKQIVSEA 263
++N PPPE+ + +
Sbjct: 117 SDNAPPPELLESGPSS 132
Score = 146 bits (371), Expect = 7e-43
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK----GV 66
S DVI+LT +FD V+ S++VW+VE+YAPWCGHC++ + E+ A+ +K G
Sbjct: 2 SSGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGK 61
Query: 67 VKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
VK+ AV+A + L+S +G+ GFPT+KIF +P Y G RT I+ AL+
Sbjct: 62 VKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAP 121
Score = 70.1 bits (172), Expect = 9e-15
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+FD V+ S++VW+VE+YAPWCGHC++ + E+ A+ +K
Sbjct: 16 SFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVK 55
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 188 bits (479), Expect = 1e-56
Identities = 70/295 (23%), Positives = 108/295 (36%), Gaps = 49/295 (16%)
Query: 9 HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
H Y S + +LT +FD + ++ +VE+YAPWCGHC+ + K A L GVV+
Sbjct: 10 HNFYDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQ 69
Query: 69 VGAVNAD--EEKSLSSSHGVTGFPTVKIF-----------------SDKRNPTPYQGART 109
V AVN D + K+L + + V GFPT+ +F Y GART
Sbjct: 70 VAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGART 129
Query: 110 ADAIIDVALEAIRQKVKGGKSGG------RKGSSKAVVELTDSNFEKLVYNS---DDIWL 160
I+D +L IR VK RK +VV + + VY S D +
Sbjct: 130 LAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGK 189
Query: 161 VEFFAPWCGHCKNL---EPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
+F++ K L P +EK + K+ + + F
Sbjct: 190 FDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-----------SKLVVF 238
Query: 218 SPGSRSASDAQEYNGGR-TSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACED 271
EY G DI + + ++ P + + +
Sbjct: 239 DADK---DKFWEYEGNSINKNDISKFLRDTFS---ITPNEGPFSRRSEYIAYLKT 287
Score = 171 bits (434), Expect = 4e-50
Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 38/259 (14%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV- 194
S + ELT +F+K ++N++ LVEF+APWCGHCK L + KAA L+G V++ AV
Sbjct: 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVN 74
Query: 195 -DATVHQRIAGEFNIRGYPTIKFFSPGSRSASD-------------AQEYNGGRTSQDIV 240
D ++ + ++++ G+PT+ F P S + Y+G RT IV
Sbjct: 75 CDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIV 134
Query: 241 TWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQK 300
++L++ +K+ V T P V + Q Y I
Sbjct: 135 DFSLSRI-----RSYVKKFVRIDTLGSLLRKSPKLSVVL----FSKQDKISPVYKSIALD 185
Query: 301 LGDKYK-------------QKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKY 347
K+ + + + + + + E + V +A K K+
Sbjct: 186 WLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKF 245
Query: 348 SLLKGP-FSYDGINEFLRD 365
+G + + I++FLRD
Sbjct: 246 WEYEGNSINKNDISKFLRD 264
Score = 70.9 bits (173), Expect = 7e-14
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+FD + ++ +VE+YAPWCGHC+ + K A L
Sbjct: 26 SFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD 65
Score = 32.4 bits (73), Expect = 0.24
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 10/132 (7%)
Query: 333 GYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPV---KGAALPQINQVDA 389
G+P + V K+ S S R V + +
Sbjct: 91 GFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVR 150
Query: 390 WDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKD- 448
D L + + + +D+ + K I D + ++Y+ + D
Sbjct: 151 IDTLGSLLRKSPKL----SVVLFSKQDKISPVYKSIALDWLGKFDFYSISNKKLKQLTDM 206
Query: 449 --EYMKLATALK 458
Y K K
Sbjct: 207 NPTYEKTPEIFK 218
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 189 bits (482), Expect = 2e-56
Identities = 57/376 (15%), Positives = 124/376 (32%), Gaps = 51/376 (13%)
Query: 12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV----- 66
Y V+ LT NF + K D + YY + + ++ L+ V
Sbjct: 7 YDGKDRVVSLTEKNFKQVLKKYD--VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLE 64
Query: 67 ---VKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQ 123
+ V+A +E L+ G ++ + + G AD +++ L+ I
Sbjct: 65 HKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGD-RTIEFDGEFAADVLVEFLLDLIED 123
Query: 124 KVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAAS 183
V+ + + + D I L+ FF +E+AA
Sbjct: 124 PVE--------------IINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAE 166
Query: 184 ELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243
+ +K AT + +A + +++ + F+ P + T +++V +
Sbjct: 167 HFQPYIKFF---ATFDKGVAKKLSLKM-NEVDFYEPFMDEPIAI--PDKPYTEEELVEFV 220
Query: 244 LNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGD 303
P ++++ E F+ +D + + +LEIL+++
Sbjct: 221 KEHQR-----PTLRRLRPEDMFETWEDDLNGIHIVA---FAERSDPDGYEFLEILKQVAR 272
Query: 304 KYKQK-VWGWIWSEAVAQPDLENVLEI---GGFGYPAMAVLNA-----KKMKYSLLKGPF 354
+W + P L E P + V+N M+
Sbjct: 273 DNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLP 332
Query: 355 SYDGINEFLRDLSYGR 370
+ + + +++ D+ G+
Sbjct: 333 TAEELEDWIEDVLSGK 348
Score = 54.7 bits (131), Expect = 3e-08
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 396 ELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
P + D + L E NF + K D + YY + + ++
Sbjct: 3 NFPTYDGKD----RVVSL--TEKNFKQVLKKYD--VLCLYYHESVSSDKVAQKQFQLKEI 54
Query: 456 ALKV 459
L++
Sbjct: 55 VLEL 58
Score = 28.1 bits (62), Expect = 6.5
Identities = 3/47 (6%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVYC 461
+ D++ ++ ++ + + + A + Y
Sbjct: 129 NSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAEHFQPYI 172
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 186 bits (473), Expect = 5e-55
Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 16/243 (6%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
VI+ T + I+ + + A + KG + +++D
Sbjct: 119 VIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHT 178
Query: 78 --KSLSSSHGVTG--FPTVKIF---SDKRNPTPYQGARTADAIIDVALEAIRQKVK---G 127
+ + G+ P V++ + P TA+ I + + K+K
Sbjct: 179 DNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLM 238
Query: 128 GKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG 187
+ + V L NFE + ++ VEF+APWCGHCK L P W+K +
Sbjct: 239 SQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD 298
Query: 188 --KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245
+ + +D+T ++ + +PT+KFF + +YNG RT + +
Sbjct: 299 HENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASAD--RTVIDYNGERTLDGFKKFLES 354
Query: 246 KYT 248
Sbjct: 355 GGQ 357
Score = 111 bits (278), Expect = 3e-27
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Query: 12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
V L NF+D + VE+YAPWCGHC+ + KL K +
Sbjct: 245 DWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 304
Query: 72 VNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIID 115
D + + V FPT+K F S R Y G RT D
Sbjct: 305 AKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKK 350
Score = 92.8 bits (230), Expect = 6e-21
Identities = 55/330 (16%), Positives = 104/330 (31%), Gaps = 48/330 (14%)
Query: 133 RKGSSKAVVELTDS-NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
+ S+ L D E LV S ++ ++ FF + +AA ++
Sbjct: 12 QGPGSEFATTLPDGAAAESLV-ESSEVAVIGFFKDVESDSA---KQFLQAAEAIDDIP-- 65
Query: 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251
T + + ++ + + F + G T ++++ + +
Sbjct: 66 --FGITSNSDVFSKYQLDKDGVVLFKKFDEGRN----NFEGEVTKENLLDFIKHNQL--- 116
Query: 252 PPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV-W 310
P + + + K + I+ LP S + L + + +K K+ +
Sbjct: 117 --PLVIEFTEQTAPKIFGGEIKTHILLFLPK----SVSDYDGKLSNFKTAAESFKGKILF 170
Query: 311 GWIWSEAVAQPDLENVLEIGGFGYPAMAV--LNAKKMKYSLLKGPFSYDGINEFLRDLSY 368
+I S+ + + PA+ + L + KY + + I EF
Sbjct: 171 IFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLE 230
Query: 369 GRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSD 428
G+ ED D V NF+D
Sbjct: 231 GKI-------------------KPHLMSQELPEDWDKQPV----KVLVGKNFEDVAFDEK 267
Query: 429 EVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+ VE+YAPWCGHC+ + KL K
Sbjct: 268 KNVFVEFYAPWCGHCKQLAPIWDKLGETYK 297
Score = 49.3 bits (117), Expect = 1e-06
Identities = 15/225 (6%), Positives = 44/225 (19%), Gaps = 61/225 (27%)
Query: 234 RTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNN 293
S + + A + E + ++ D +S
Sbjct: 2 HHSSGLEVLFQGP-----GSEFATTLPDGAAAESLVESSEVAVIGFFK---DVESDSAKQ 53
Query: 294 YLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGP 353
+L+ + + D +V + + + +G
Sbjct: 54 FLQAAEAI-DDIP-----------FGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGE 101
Query: 354 FSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDL 413
+ + + +F++ + P+ Q
Sbjct: 102 VTKENLLDFIKH------NQLPLVIEFTEQ------------------------------ 125
Query: 414 PKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+ I+ + + A + K
Sbjct: 126 -----TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK 165
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 176 bits (447), Expect = 4e-54
Identities = 58/121 (47%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 126 KGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL 185
G G SS V+ELT SNF + V SD +WLVEF+APWCGHC+ L P W+KAA+ L
Sbjct: 5 SSGAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATAL 64
Query: 186 EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245
+ VK+GAV+A HQ + G++ ++G+PTIK F D Y GGRT + IV AL+
Sbjct: 65 KDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPED---YQGGRTGEAIVDAALS 121
Query: 246 K 246
Sbjct: 122 A 122
Score = 160 bits (406), Expect = 5e-48
Identities = 70/128 (54%), Positives = 89/128 (69%), Gaps = 5/128 (3%)
Query: 6 ASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG 65
+V LY S DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ E+ K ATALK
Sbjct: 7 GAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD 66
Query: 66 VVKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQK 124
VVKVGAVNAD+ +SL +GV GFPT+KIF ++K P YQG RT +AI+D A
Sbjct: 67 VVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD----AALSA 122
Query: 125 VKGGKSGG 132
++ G S G
Sbjct: 123 LRSGPSSG 130
Score = 72.4 bits (178), Expect = 1e-15
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
NF+ +VI+SD +W+VE+YAPWCGHCQ E+ K ATALK
Sbjct: 26 NFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK 65
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 179 bits (455), Expect = 3e-52
Identities = 58/375 (15%), Positives = 130/375 (34%), Gaps = 49/375 (13%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKD------EYMKLATALK-GVVK 68
VI + N+ + V K EV + Y+ P S + A L+ V
Sbjct: 13 DRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVG 71
Query: 69 VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGG 128
G V+++++ +++ G+T ++ +F + Y G +AD +++ L+ + V+
Sbjct: 72 FGLVDSEKDAAVAKKLGLTEEDSIYVFKED-EVIEYDGEFSADTLVEFLLDVLEDPVE-- 128
Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK 188
+ + + D+I L+ +F +++AA E
Sbjct: 129 ------------LIEGERELQAFENIEDEIKLIGYFK---NKDSEHYKAFKEAAEEFHPY 173
Query: 189 VKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT 248
+ AT ++A + ++ I F+ + + ++IV +
Sbjct: 174 IPFF---ATFDSKVAKKLTLK-LNEIDFYEAFMEEPVTI--PDKPNSEEEIVNFVEEHRR 227
Query: 249 ENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQK 308
++++ E+ ++ +D + + +LEIL+ +
Sbjct: 228 -----STLRKLKPESMYETWEDDMDGIHIVA---FAEEADPDGYEFLEILKSVAQDNTDN 279
Query: 309 V-WGWIWSEAVAQPDLENVLEIG---GFGYPAMAVLNA-----KKMKYSLLKGPFSYDGI 359
IW + P L E P + V+N M+ + S + +
Sbjct: 280 PDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEEL 339
Query: 360 NEFLRDLSYGRGHTA 374
++L D+ G +T
Sbjct: 340 EDWLEDVLEGEINTE 354
Score = 53.9 bits (129), Expect = 5e-08
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 400 EEDIDLSDVDLED--LPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKD------EYM 451
EE +D + D D + + N+ + V K EV + Y+ P S +
Sbjct: 1 EEGLDFPEYDGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILE 59
Query: 452 KLATALK 458
A L+
Sbjct: 60 LAAQVLE 66
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 170 bits (432), Expect = 6e-52
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
+A ++LT F + V W+V+F+APWCG C+N P +E A ++GKV+ G VD
Sbjct: 2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDC 61
Query: 197 TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPP 253
+ + + I+ YP++K + S +E R ++ I + E +
Sbjct: 62 QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAAL-IYGKLETLQS 117
Score = 142 bits (359), Expect = 4e-41
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
I LT F++KV++ W+V++YAPWCG CQ+F E+ LA +KG V+ G V+
Sbjct: 3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQ 62
Query: 76 EEKSLSSSHGVTGFPTVKIFSD----KRNPTPYQGARTADAIIDVALEAIRQKVKGGKS 130
G+ +P+VK++ K +R A I + + K
Sbjct: 63 AYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKR 121
Score = 67.4 bits (165), Expect = 6e-14
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
F++KV++ W+V++YAPWCG CQ+F E+ LA +K
Sbjct: 12 TFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK 51
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 166 bits (423), Expect = 2e-50
Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 128 GKSGGRKGS------SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKA 181
G SG V L D NF+ V D L+EF+APWCGHCK P +EK
Sbjct: 1 GSSGSSGDDDLEVKEENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKI 59
Query: 182 ASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQD 238
AS L+ + + +DAT +A +F++ GYPTIK G A +Y+G RT ++
Sbjct: 60 ASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG-----QAVDYDGSRTQEE 114
Query: 239 IVTWALNKYTENV-PPPEIKQIVSEA 263
IV + PPPE+ S
Sbjct: 115 IVAKVREVSQPDWTPPPEVTSGPSSG 140
Score = 133 bits (337), Expect = 9e-38
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAV 72
+ V L NFD+ + + ++E+YAPWCGHC+ F EY K+A+ LK + V +
Sbjct: 17 NGVWVLNDGNFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKI 75
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
+A L+S V+G+PT+KI Y G+RT + I+
Sbjct: 76 DATSASMLASKFDVSGYPTIKILKKG-QAVDYDGSRTQEEIVA 117
Score = 67.0 bits (164), Expect = 1e-13
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 392 GKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYM 451
G G ++ + + L F D + + ++E+YAPWCGHC+ F EY
Sbjct: 1 GSSGSSGDDDLEVKEENGVWVLNDGNF---DNFVADKDTVLLEFYAPWCGHCKQFAPEYE 57
Query: 452 KLATALK 458
K+A+ LK
Sbjct: 58 KIASTLK 64
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 166 bits (422), Expect = 3e-50
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVK 190
G GSS V +TD N+ +L+ + W++EF+APWC C+NL+P WE A E +V
Sbjct: 1 GSSGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVN 57
Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN 250
+ VD T ++G F I PTI G + Y G RT +D + + +K ++
Sbjct: 58 IAKVDVTEQPGLSGRFIINALPTIYHCKDGEF-----RRYQGPRTKKDFINFISDKEWKS 112
Query: 251 VPPPE 255
+ P
Sbjct: 113 IEPVS 117
Score = 131 bits (331), Expect = 5e-37
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVG 70
S +V +T N+ + + + W++E+YAPWC CQ+ + E+ A + + V +
Sbjct: 3 SGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIA 59
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKS 130
V+ E+ LS + PT+ D YQG RT I+ + + ++ S
Sbjct: 60 KVDVTEQPGLSGRFIINALPTIYHCKDG-EFRRYQGPRTKKDFINFISDKEWKSIEPVSS 118
Query: 131 GGRKGSS 137
SS
Sbjct: 119 WFSGPSS 125
Score = 59.6 bits (145), Expect = 4e-11
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
N+ + + + W++E+YAPWC CQ+ + E+ A +
Sbjct: 16 NWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGE 52
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 161 bits (409), Expect = 1e-48
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 9/113 (7%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL---EGKVKLGA 193
V+ LT++NF+ + ++ I ++F+APWCGHCK L P WE+ + + VK+
Sbjct: 4 GSTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61
Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
VD T + I ++++RGYPT+ F G + E++GGR + + L++
Sbjct: 62 VDCTAERNICSKYSVRGYPTLLLFRGGKK----VSEHSGGRDLDSLHRFVLSQ 110
Score = 137 bits (346), Expect = 2e-39
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKV 69
P S V+ LT +NFDD + ++ + +++YAPWCGHC++ + +L+ VK+
Sbjct: 2 PLGSTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKI 59
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE 119
V+ E+++ S + V G+PT+ +F + + + G R D++ L
Sbjct: 60 AEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109
Score = 62.7 bits (153), Expect = 2e-12
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
NFDD + ++ + +++YAPWCGHC++ + +L+
Sbjct: 14 NFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEF 51
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 161 bits (410), Expect = 1e-48
Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLG 192
V+ L SNF + + + LVEF+APWCGHCK L P + KAA +L+ +++L
Sbjct: 5 EEDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLA 63
Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
VDAT +A ++ +RGYPTIKFF G + +EY GR + DIV W +
Sbjct: 64 KVDATEESDLAQQYGVRGYPTIKFFRNGDT--ASPKEYTAGREADDIVNWLKKR 115
Score = 135 bits (343), Expect = 6e-39
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAV 72
V+ L SNF + + + + +VE+YAPWCGHC++ EY K A LK +++ V
Sbjct: 7 DHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65
Query: 73 NADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGARTADAIID 115
+A EE L+ +GV G+PT+K F D +P Y R AD I++
Sbjct: 66 DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVN 110
Score = 66.2 bits (162), Expect = 2e-13
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 396 ELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
+ P+EED + L K F + + + + +VE+YAPWCGHC++ EY K A
Sbjct: 1 DAPEEED------HVLVLRKSNF---AEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAG 51
Query: 456 ALK 458
LK
Sbjct: 52 KLK 54
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 168 bits (426), Expect = 7e-47
Identities = 41/309 (13%), Positives = 89/309 (28%), Gaps = 18/309 (5%)
Query: 6 ASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG 65
+ + LY S + L + V+ S W VE++A WCGH +F + +LA +K
Sbjct: 2 SHMSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKD 61
Query: 66 ---VVKVGAVNADEE--KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA 120
+ + ++ EE ++ + GFPTV+ F A A +
Sbjct: 62 WRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMR 121
Query: 121 IRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLV---EFFAPWCGHCKNLEPH 177
+ ++ + + ++ + + +L E + G L+
Sbjct: 122 LIDALE-SHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLS 180
Query: 178 WEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A + +F + +P+ +
Sbjct: 181 QYHA--------VAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYT 232
Query: 238 DIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEI 297
+ L T + PP + ++ + + + R +
Sbjct: 233 SYLRG-LPGLTRDAPPTTATPVTADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKF 291
Query: 298 LQKLGDKYK 306
G +
Sbjct: 292 SVLEGQRLV 300
Score = 162 bits (411), Expect = 1e-44
Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 26/265 (9%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLG 192
SS + L + V S W VEFFA WCGH P W++ A++++ + L
Sbjct: 10 SSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLA 69
Query: 193 AVDAT--VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL------ 244
+D + + EFNI G+PT++FF +++ S A G Q + +
Sbjct: 70 VLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESH 129
Query: 245 -NKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGD 303
+ + PP E ++ F + L +V + R L++ Q
Sbjct: 130 RDTWPPACPPLEPAKLNDIDGFFTRNKADYLALV----FEREDSYLGREVTLDLSQYHAV 185
Query: 304 KYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFL 363
++ V + + V + G +P+ +L + S +L
Sbjct: 186 AVRR----------VLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYL 235
Query: 364 RDLSYGRGHTAPVKGAALPQINQVD 388
R L P +
Sbjct: 236 RGLPGLTRDAPPTTATPVTADKIAP 260
Score = 73.4 bits (179), Expect = 4e-14
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+ V+ S W VE++A WCGH +F + +LA +K
Sbjct: 21 SVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVK 60
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 150 bits (380), Expect = 4e-44
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KV 189
G GSS V + F+ +V + L+EF+APWCGHCK LEP + + +G +
Sbjct: 1 GSSGSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDL 60
Query: 190 KLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTE 249
+ +DAT + ++ + G+PTI F G + + + G R + + + T+
Sbjct: 61 VIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATK 119
Query: 250 NVPPPE 255
E
Sbjct: 120 RSRTKE 125
Score = 124 bits (312), Expect = 3e-34
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV--VK 68
S V + FD V+ + ++E+YAPWCGHC+ + Y L KG +
Sbjct: 2 SSGSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLV 61
Query: 69 VGAVNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQ-GARTADAIIDVALEAIRQKV 125
+ ++A + + V GFPT+ DK+NP ++ G R + + E ++
Sbjct: 62 IAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRS 121
Query: 126 K 126
+
Sbjct: 122 R 122
Score = 67.4 bits (165), Expect = 7e-14
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
FD V+ + ++E+YAPWCGHC+ + Y L K
Sbjct: 16 TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYK 55
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 149 bits (379), Expect = 5e-44
Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-----KVKLGA 193
VVELTD F+ +V + + V ++ PW H W+ +
Sbjct: 16 RVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAAR 75
Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
+D + + + G+PT+++++ + + EY+G R + ++
Sbjct: 76 IDGEKYPDVIERMRVSGFPTMRYYTRIDK--QEPFEYSGQRYLSLVDSFVFQN 126
Score = 126 bits (318), Expect = 4e-35
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-----VKVG 70
S V++LT FD V+ ++ V YY PW H + + L+ +
Sbjct: 15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA 74
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGARTADAIID 115
++ ++ + V+GFPT++ ++ DK+ P Y G R +
Sbjct: 75 RIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDS 121
Score = 66.6 bits (163), Expect = 1e-13
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
FD V+ ++ V YY PW H + + L+ +
Sbjct: 24 TFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQS 63
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 144 bits (365), Expect = 1e-40
Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 19/220 (8%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-------K 188
+K + L F K++ S + LV+F + K +++ A +
Sbjct: 3 HTKGALPLDTVTFYKVIPKSKFV-LVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAE 59
Query: 189 VKLGAVDATVHQRIAGEFNI--RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
V + ++ ++ ++ + YP F G + Y G I W +
Sbjct: 60 VGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDF--ENPVPYTGAVKVGAIQRWLKGQ 117
Query: 247 YTENVPPPEIKQI--VSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDK 304
P + ++ + + + ++ L + + E K+ K
Sbjct: 118 GVYLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGK 177
Query: 305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKK 344
+ + SE + ++E L
Sbjct: 178 ILDQGEDFPASEMT---RIARLIEKNKMSDGKKEELQKSL 214
Score = 105 bits (263), Expect = 3e-26
Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 25/161 (15%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-----VVKVG 70
+ L T F KVI + +V++ + + +DE+ +LA V +VG
Sbjct: 5 KGALPLDTVTFY-KVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVG 61
Query: 71 AVNADE--EKSLSSSHGV--TGFPTVKIF--SDKRNPTPYQGARTADAIIDVALEAIRQK 124
+ + LS + + +P +F D NP PY GA AI
Sbjct: 62 ISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWL------- 114
Query: 125 VKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFA 165
K G + + D+ + + S
Sbjct: 115 ----KGQGVYLGMPGCLPVYDALAGEFIRASGVEARQALLK 151
Score = 57.7 bits (139), Expect = 1e-09
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
D F KVI + +V++ + + +DE+ +LA
Sbjct: 11 DTVTFY-KVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSA 50
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 137 bits (348), Expect = 1e-39
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAA-----SELE 186
G GS V + N+ ++V + L+EF+APWCGHCK L P +E+ SE +
Sbjct: 1 GPLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFK 60
Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
+V + VDAT + I+G+PTIK + G++ Y+G RT +D++ +
Sbjct: 61 DRVVIAKVDATANDV---PDEIQGFPTIKLYPAGAK--GQPVTYSGSRTVEDLIKFIAEN 115
Query: 247 YTENV 251
Sbjct: 116 GKYKA 120
Score = 114 bits (287), Expect = 7e-31
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV----- 66
S V + N+++ V+ + ++E+YAPWCGHC++ +Y +L
Sbjct: 3 LGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDR 62
Query: 67 VKVGAVNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIID 115
V + V+A + GFPT+K++ K P Y G+RT + +I
Sbjct: 63 VVIAKVDATANDVP---DEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIK 110
Score = 63.9 bits (156), Expect = 8e-13
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
N+++ V+ + ++E+YAPWCGHC++ +Y +L
Sbjct: 16 NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYA 55
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 142 bits (358), Expect = 1e-37
Identities = 37/264 (14%), Positives = 87/264 (32%), Gaps = 28/264 (10%)
Query: 120 AIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHW 178
++ Q G G +VV+L+ +F ++ + W+V F+ CG C+ +
Sbjct: 5 SVAQVATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTF 64
Query: 179 EKAASELEGK--------VKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY 230
K A L+ + AV+ + +++I P + FF P S+ E
Sbjct: 65 SKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSN--EE 122
Query: 231 NGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSC 290
G + + + + + + + H + ++ +D
Sbjct: 123 CGTSSLEHVAFENSHLEVDELESE----------VRRLVNKHMVVDDSLKERCIDMHFKL 172
Query: 291 RNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVL------EIGGFGYPAMAVLNAKK 344
+ E++++ + ++ + + D+ ++ G L A +
Sbjct: 173 YTSKEELVKRSVSSTDE-SGRFVETTELYATDIAGAFFSAMHYDVSLVGTEPRERLTALE 231
Query: 345 MKYSLLKGPFSYDGINEFLRDLSY 368
L+K G + + L
Sbjct: 232 DFVLLVKDSLPSIGADGVVSALES 255
Score = 118 bits (295), Expect = 4e-29
Identities = 27/180 (15%), Positives = 51/180 (28%), Gaps = 20/180 (11%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEV-WIVEYYAPWCGHCQSFKDEYMKLATALKG---- 65
L+ S V+ L+ +F + WIV +Y CG C+ + + K A LK
Sbjct: 18 LFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGK 77
Query: 66 ----VVKVGAVNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIIDVALE 119
+ AVN E L + + P + F D G + + +
Sbjct: 78 DALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSH 137
Query: 120 AIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWE 179
+++ L + + + + K +
Sbjct: 138 LEVDELESEVRRLVNKHMVVDDSLKERCID---------MHFKLYTSKEELVKRSVSSTD 188
Score = 63.5 bits (153), Expect = 5e-11
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 419 NFDDKVIKSDEV-WIVEYYAPWCGHCQSFKDEYMKLATALKVY 460
+F + WIV +Y CG C+ + + K A LKV
Sbjct: 32 DFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVE 74
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 134 bits (337), Expect = 9e-37
Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 26/225 (11%)
Query: 28 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-----VKVGAVNADEEKSLSS 82
K K + A C CQ+ ++ + + +K+ + K +
Sbjct: 16 QKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETE 75
Query: 83 SHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVE 142
+GV PT+ I DK Y G + + +
Sbjct: 76 KYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQ------------- 122
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
L++ E L I + F CG+C + A + +DA+ +Q +
Sbjct: 123 LSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA-NDYITSKVIDASENQDL 181
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
A +F + G P I E+ G + + + + Y
Sbjct: 182 AEQFQVVGVPKIVI-------NKGVAEFVGAQPENAFLGYIMAVY 219
Score = 66.6 bits (162), Expect = 1e-12
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 4/112 (3%)
Query: 20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS 79
+L+ + + + I + CG+C S A + ++A E +
Sbjct: 122 QLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFA-LANDYITSKVIDASENQD 180
Query: 80 LSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSG 131
L+ V G P + I + + GA+ +A + + + + +
Sbjct: 181 LAEQFQVVGVPKIVI---NKGVAEFVGAQPENAFLGYIMAVYEKLKREKEQA 229
Score = 37.0 bits (85), Expect = 0.007
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 422 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
K K + A C CQ+ ++ + +
Sbjct: 16 QKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIG 52
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 93.2 bits (232), Expect = 7e-23
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 127 GGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE 186
G K VVE + F + V + LV+FFAPWCG C+ + P E+ A +
Sbjct: 22 VPVCGACKTPLPWVVEADEKGFAQEVAGAPLT-LVDFFAPWCGPCRLVSPILEELARDHA 80
Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
G++K+ V+ H +A + +R PT+ F G
Sbjct: 81 GRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRG 114
Score = 74.4 bits (183), Expect = 3e-16
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
V++ F +V + +V+++APWCG C+ +LA G +KV VN D
Sbjct: 33 PWVVEADEKGFAQEVAGAPLT-LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVD 91
Query: 76 EEKSLSSSHGVTGFPTVKIFSD 97
E L++ +GV PT+ +F
Sbjct: 92 EHPGLAARYGVRSVPTLVLFRR 113
Score = 40.1 bits (94), Expect = 2e-04
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
F +V + +V+++APWCG C
Sbjct: 42 GFAQEVAGAPLT-LVDFFAPWCGPC 65
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 93.3 bits (232), Expect = 9e-23
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 116 VALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLE 175
+ E I K G+ G + V+ T +K + D +++F+APWCG C++
Sbjct: 17 LPEERIDDGAKCGRCGHSLFDGE-VINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFA 74
Query: 176 PHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
P + + A+E GKV+ V+ ++ F IR PTI + G
Sbjct: 75 PIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNG 119
Score = 74.8 bits (184), Expect = 2e-16
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
VI T D +++ D +++++APWCG C+SF + + A G V+ VN + E
Sbjct: 40 VINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE 98
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+LS+ + PT+ ++ +
Sbjct: 99 PALSTRFRIRSIPTIMLYRN 118
Score = 39.7 bits (93), Expect = 4e-04
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
D +++ D +++++APWCG C+SF + + A
Sbjct: 47 TLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA 85
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 92.1 bits (229), Expect = 2e-22
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD 195
+ +++E D + + V +S +V F++P C +CK +EP++E+ A E G ++
Sbjct: 4 NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRIN 63
Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPG 220
+ A ++ ++G PT KFF G
Sbjct: 64 IATNPWTAEKYGVQGTPTFKFFCHG 88
Score = 73.2 bits (180), Expect = 7e-16
Identities = 19/87 (21%), Positives = 38/87 (43%)
Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
+ + S +I+ + +V S + +V +Y+P C +C++ + + + A G
Sbjct: 1 MSLNGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFG 60
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSD 97
+N + +GV G PT K F
Sbjct: 61 RINIATNPWTAEKYGVQGTPTFKFFCH 87
Score = 40.5 bits (95), Expect = 2e-04
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
+ +V S + +V +Y+P C +C
Sbjct: 15 TWSQQVEDSKKPVVVMFYSPACPYC 39
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 92.2 bits (229), Expect = 2e-22
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
V D D LV+F+APWCG C+ + P ++ AA+ L G+V+L +D
Sbjct: 47 GKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA 106
Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
H +AG I+G P F G
Sbjct: 107 HPAVAGRHRIQGIPAFILFHKG 128
Score = 78.3 bits (193), Expect = 2e-17
Identities = 17/89 (19%), Positives = 37/89 (41%)
Query: 9 HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
C + + + + D +V+++APWCG C+ ++ A L G V+
Sbjct: 39 ICGAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVR 98
Query: 69 VGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
+ ++ +++ H + G P +F
Sbjct: 99 LAKIDTQAHPAVAGRHRIQGIPAFILFHK 127
Score = 41.7 bits (98), Expect = 8e-05
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSF 446
+ + D +V+++APWCG C+
Sbjct: 55 AILARAERDDLPLLVDFWAPWCGPCRQM 82
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 89.0 bits (221), Expect = 2e-21
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
++ SN V + + ++ FFA WC C +K ++ L VD
Sbjct: 25 PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK 84
Query: 199 HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
++ +A +F+++ PTI + A +S D++ + K+
Sbjct: 85 NESLARKFSVKSLPTIILLKNKTMLARKD----HFVSSNDLIAL-IKKH 128
Score = 70.1 bits (172), Expect = 6e-15
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
++ SN + V + V ++ ++A WC C E KL + + V+ D+
Sbjct: 26 RLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKN 85
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+SL+ V PT+ + +
Sbjct: 86 ESLARKFSVKSLPTIILLKN 105
Score = 40.5 bits (95), Expect = 2e-04
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
N + V + V ++ ++A WC C
Sbjct: 33 NIINGVNMKNTVIVLYFFAKWCQAC 57
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 87.4 bits (217), Expect = 4e-21
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
++ +L + FE+L+Y+ LV F C C+ + P E+ E VD
Sbjct: 5 SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE 64
Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
+ + F+++G P I +F G
Sbjct: 65 EKTLFQRFSLKGVPQILYFKDG 86
Score = 71.2 bits (175), Expect = 2e-15
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
+ KL T+ F+ + + +V + C CQ +E L + V+
Sbjct: 6 LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEE---LRLNYEESFGFYYVDV 62
Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
+EEK+L + G P + F D
Sbjct: 63 EEEKTLFQRFSLKGVPQILYFKD 85
Score = 39.6 bits (93), Expect = 2e-04
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
F+ + + +V + C CQ
Sbjct: 13 TFEQLIYDEGKACLVMFSRKNCHVCQ 38
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 86.9 bits (216), Expect = 5e-21
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
+V+E+TD NFE+ V SD LV+F+APWCG C+ + P E+ A E EGKVK+ V+
Sbjct: 2 SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDE 61
Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
+ A ++ IR PT+ F G
Sbjct: 62 NPNTAAQYGIRSIPTLLLFKNG 83
Score = 68.5 bits (168), Expect = 2e-14
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
VI++T NF+ +V+KSD+ +V+++APWCG C+ +E LA +G VKV VN
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEE---LAKEYEGKVKVVKVNV 59
Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
DE + ++ +G+ PT+ +F +
Sbjct: 60 DENPNTAAQYGIRSIPTLLLFKN 82
Score = 39.2 bits (92), Expect = 3e-04
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
NF+ +V+KSD+ +V+++APWCG C
Sbjct: 10 NFEQEVLKSDKPVLVDFWAPWCGPC 34
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 86.5 bits (215), Expect = 5e-21
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
V ++ DS++++ V S+ +V+F+APWCG CK + P ++ A E GK+ + ++
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 200 QRIAGEFNIRGYPTIKFFSPG 220
IA ++NIR PT+ FF G
Sbjct: 62 PGIATQYNIRSIPTVLFFKNG 82
Score = 69.6 bits (171), Expect = 6e-15
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVN 73
+V + S++ + V++S+ +V+++APWCG C+ DE LA G + V +N
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDE---LAKEYSGKIAVYKLN 57
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
DE +++ + + PTV F +
Sbjct: 58 TDEAPGIATQYNIRSIPTVLFFKN 81
Score = 39.2 bits (92), Expect = 3e-04
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
++ + V++S+ +V+++APWCG C
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPC 33
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 91.8 bits (228), Expect = 6e-21
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKVK 190
G S + +V + +SN ++++ S L F++ HC L P E A++ G+
Sbjct: 1 GSHMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFI 60
Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
L +D Q IA +F +R PT+ F G
Sbjct: 61 LAKLDCDAEQMIAAQFGLRAIPTVYLFQNG 90
Score = 74.8 bits (184), Expect = 3e-15
Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 16 SDVIKLTTSNFDDKVIKSDEV-WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
+++ + SN + +S + +++ HC LA G + ++
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDC 66
Query: 75 DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV 116
D E+ +++ G+ PTV +F + + +QG + +AI +
Sbjct: 67 DAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRAL 108
Score = 34.8 bits (80), Expect = 0.041
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 416 DEFNFDDKVIKSDEV-WIVEYYAPWCGHCQSFKDEYMKLATA 456
+E N + +S + +++ HC LA
Sbjct: 13 NESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQ 54
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 87.0 bits (216), Expect = 6e-21
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
SK V+ +TD+ FE V ++ LV F+A WCG C+ + P AA+ ++K+ ++
Sbjct: 6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 65
Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
+ ++ + G P ++
Sbjct: 66 DPNPTTVKKYKVEGVPALRLVKGE 89
Score = 67.3 bits (165), Expect = 5e-14
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
VI +T + F+ +V+K+++ +V ++A WCG CQ + A +KV +
Sbjct: 9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINL---AANTYSDRLKVVKLEI 65
Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
D + + V G P +++
Sbjct: 66 DPNPTTVKKYKVEGVPALRLVKG 88
Score = 38.4 bits (90), Expect = 6e-04
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
F+ +V+K+++ +V ++A WCG C
Sbjct: 16 EFESEVLKAEQPVLVYFWASWCGPC 40
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 86.6 bits (215), Expect = 7e-21
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
+ + +TD +FE+ V +D LV+F+A WCG C+ + P E A+E K+++ ++
Sbjct: 4 AGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNI 63
Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
+ A ++ + PT+ + G
Sbjct: 64 DENPGTAAKYGVMSIPTLNVYQGG 87
Score = 68.1 bits (167), Expect = 2e-14
Identities = 19/80 (23%), Positives = 42/80 (52%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+ +T +F+ V+K+D+ +V+++A WCG C+ +A +++ +N DE
Sbjct: 7 LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDEN 66
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
++ +GV PT+ ++
Sbjct: 67 PGTAAKYGVMSIPTLNVYQG 86
Score = 38.8 bits (91), Expect = 4e-04
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
+F+ V+K+D+ +V+++A WCG C
Sbjct: 14 SFEQDVLKNDKPVLVDFWAAWCGPC 38
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 86.5 bits (215), Expect = 8e-21
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
S ++ LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
+ A ++ IRG PT+ F G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNG 84
Score = 68.0 bits (167), Expect = 2e-14
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
+I LT +FD V+K+D +V+++A WCG C+ DE +A +G + V +N
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLNI 60
Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
D+ + +G+ G PT+ +F +
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKN 83
Score = 39.2 bits (92), Expect = 3e-04
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
+FD V+K+D +V+++A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 87.1 bits (216), Expect = 8e-21
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
S ++ LTD +F+ V +D LV+F+A WCG K + P ++ A E +GK+ + ++
Sbjct: 21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNI 80
Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
+ A ++ IRG PT+ F G
Sbjct: 81 DQNPGTAPKYGIRGIPTLLLFKNG 104
Score = 69.0 bits (169), Expect = 2e-14
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
+I LT +FD V+K+D +V+++A WCG + DE +A +G + V +N
Sbjct: 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDE---IADEYQGKLTVAKLNI 80
Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
D+ + +G+ G PT+ +F +
Sbjct: 81 DQNPGTAPKYGIRGIPTLLLFKN 103
Score = 39.3 bits (92), Expect = 4e-04
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
+FD V+K+D +V+++A WCG
Sbjct: 31 SFDTDVLKADGAILVDFWAEWCGPA 55
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 89.5 bits (222), Expect = 9e-21
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGY 211
NS ++W V F++P C HC +L P W + A E++G +++GAV+ + + + Y
Sbjct: 110 AVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSY 169
Query: 212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251
P++ F G + +YNG R+ + +V +A+ V
Sbjct: 170 PSLFIFRSGMAA----VKYNGDRSKESLVAFAMQHVRSTV 205
Score = 88.0 bits (218), Expect = 3e-20
Identities = 28/99 (28%), Positives = 53/99 (53%)
Query: 28 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVT 87
D + S E+W V +Y+P C HC + + A + G++++GAVN +++ L GV
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVN 167
Query: 88 GFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
+P++ IF Y G R+ ++++ A++ +R V
Sbjct: 168 SYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVT 206
Score = 39.8 bits (93), Expect = 8e-04
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 422 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
D + S E+W V +Y+P C HC + + A +
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD 144
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 85.4 bits (212), Expect = 2e-20
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
S+ + ++DS+F++ V + + LV+F+A WCG CK + P + E GKV + V+
Sbjct: 1 SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60
Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
+ + +R PT+ G
Sbjct: 61 DDNPETPNAYQVRSIPTLMLVRDG 84
Score = 67.7 bits (166), Expect = 3e-14
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+ ++ S+FD V+K+ + +V+++A WCG C+ ++ G V V VN D+
Sbjct: 4 TLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDN 63
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+++ V PT+ + D
Sbjct: 64 PETPNAYQVRSIPTLMLVRD 83
Score = 38.8 bits (91), Expect = 4e-04
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
+FD V+K+ + +V+++A WCG C+
Sbjct: 11 SFDQDVLKASGLVLVDFWAEWCGPCK 36
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 85.4 bits (212), Expect = 2e-20
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
+ D F+ +V S LV+F+APWCG C+ + P ++ A E + K+K ++
Sbjct: 2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61
Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
+A E+ IR PTI F G
Sbjct: 62 SPNVASEYGIRSIPTIMVFKGG 83
Score = 67.7 bits (166), Expect = 3e-14
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
+ F + V++S +V+++APWCG C+ DE +A K +K +N
Sbjct: 3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDE---IAGEYKDKLKCVKLNT 59
Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
DE +++S +G+ PT+ +F
Sbjct: 60 DESPNVASEYGIRSIPTIMVFKG 82
Score = 39.2 bits (92), Expect = 3e-04
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
F + V++S +V+++APWCG C
Sbjct: 10 TFKNVVLESSVPVLVDFWAPWCGPC 34
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 85.5 bits (212), Expect = 2e-20
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 134 KGSSKAVVELTD-SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLG 192
+ D +F+ V NS+ +V+F A WCG CK L P EK ++ GKV +
Sbjct: 8 HHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMA 67
Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPG 220
VD H +A E+ + PT+ G
Sbjct: 68 KVDIDDHTDLAIEYEVSAVPTVLAMKNG 95
Score = 68.1 bits (167), Expect = 3e-14
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 16 SDVIKLTT-SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
S + +F D+V+ S+ +V+++A WCG C+ K+ G V + V+
Sbjct: 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDI 71
Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
D+ L+ + V+ PTV +
Sbjct: 72 DDHTDLAIEYEVSAVPTVLAMKN 94
Score = 40.8 bits (96), Expect = 1e-04
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHC 443
D +F D+V+ S+ +V+++A WCG C
Sbjct: 19 DGPDFQDRVVNSETPVVVDFHAQWCGPC 46
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 84.7 bits (210), Expect = 3e-20
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
+ LT+ NF++ V ++ + LV+ +A WC C EP ++K A + +GK G ++
Sbjct: 3 EDVTLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNV 61
Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
+Q+IA ++++ PT F G
Sbjct: 62 DENQKIADKYSVLNIPTTLIFVNG 85
Score = 67.8 bits (166), Expect = 3e-14
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+ LT NFD+ VI+++++ +V+ +A WC C ++ Y K+A KG G +N DE
Sbjct: 6 TLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDEN 64
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+ ++ + V PT IF +
Sbjct: 65 QKIADKYSVLNIPTTLIFVN 84
Score = 36.9 bits (86), Expect = 0.002
Identities = 10/25 (40%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
NFD+ VI+++++ +V+ +A WC C
Sbjct: 13 NFDE-VIRNNKLVLVDCWAEWCAPC 36
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 85.3 bits (211), Expect = 4e-20
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEG-KV 189
G GSS + D ++ + + W+VEFFA W C++ P + + + +
Sbjct: 1 GSSGSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGL 60
Query: 190 KLGAVDATVHQRIAGEFNI------RGYPTIKFFSPG 220
G VD + ++ + + + PT+ F G
Sbjct: 61 NFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGG 97
Score = 64.9 bits (158), Expect = 7e-13
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 16 SDVIK-LTTSNFDDKVIKSDEV-WIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAV 72
S IK D+++ + V WIVE++A W CQSF Y L+ + G V
Sbjct: 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKV 65
Query: 73 NADEEKSLSSSHGVT------GFPTVKIFSD 97
+ +S+ + V+ PT+ +F
Sbjct: 66 DVGRYTDVSTRYKVSTSPLTKQLPTLILFQG 96
Score = 44.5 bits (105), Expect = 8e-06
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 419 NFDDKVIKSDEV-WIVEYYAPWCGHCQSF 446
D+++ + V WIVE++A W CQSF
Sbjct: 16 TIDEELERDKRVTWIVEFFANWSNDCQSF 44
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 87.2 bits (216), Expect = 6e-20
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
S ++ LTD +F+ V +D LV+F+A WCG CK + P ++ A E +GK+ + ++
Sbjct: 11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 70
Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
+ A ++ IRG PT+ F G
Sbjct: 71 DQNPGTAPKYGIRGIPTLLLFKNG 94
Score = 68.3 bits (167), Expect = 2e-13
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
+I LT +FD V+K+D +V+++A WCG C+ DE +A +G + V +N
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLNI 70
Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
D+ + +G+ G PT+ +F +
Sbjct: 71 DQNPGTAPKYGIRGIPTLLLFKN 93
Score = 39.8 bits (93), Expect = 9e-04
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
+FD V+K+D +V+++A WCG C
Sbjct: 21 SFDTDVLKADGAILVDFWAEWCGPC 45
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 84.0 bits (208), Expect = 1e-19
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIW-----------LVEFFAPWCGHCKNLEPHWEKAA 182
+ V+ LT + F VYN + +V+F+A WCG CK + P ++ A
Sbjct: 5 TEGNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELA 64
Query: 183 SELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
E +G++ + VD Q +AG F IR P+I F
Sbjct: 65 KEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPME 102
Score = 66.7 bits (163), Expect = 1e-13
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
+ + N ++ + D+ IV++YA WCG C+ +LA G + + V+
Sbjct: 18 EFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVD 77
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKG 127
++E+ L+ + G+ P++ + P QGA + A++ K +G
Sbjct: 78 TEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKK-AIDEFLLKKEG 130
Score = 41.3 bits (97), Expect = 9e-05
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 403 IDLSDVD-LEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHC 443
I L+ + L + E N ++ + D+ IV++YA WCG C
Sbjct: 12 IHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPC 53
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 83.6 bits (207), Expect = 1e-19
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
A +++TD++F V +S+ LV+F+A WCG CK + P E+ A+E + + +D
Sbjct: 11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDV 70
Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
+ A F + PT+ F G
Sbjct: 71 DTNPETARNFQVVSIPTLILFKDG 94
Score = 67.8 bits (166), Expect = 4e-14
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAV 72
S IK+T ++F V+ S++ +V+++A WCG C+ +E +AT + V +
Sbjct: 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEE---IATERATDLTVAKL 68
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSD 97
+ D + + V PT+ +F D
Sbjct: 69 DVDTNPETARNFQVVSIPTLILFKD 93
Score = 38.5 bits (90), Expect = 7e-04
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
+F V+ S++ +V+++A WCG C
Sbjct: 21 SFATDVLSSNKPVLVDFWATWCGPC 45
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 86.7 bits (214), Expect = 1e-19
Identities = 43/222 (19%), Positives = 72/222 (32%), Gaps = 23/222 (10%)
Query: 31 IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL-KGVVKVGAVNADEEKSLSSSHGVTGF 89
+ + IV C +C K +L+ K ++ + E K L+ + +
Sbjct: 20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRA 79
Query: 90 PTVKIFSD-KRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNF 148
P I D K Y G LE I S+ L D
Sbjct: 80 PATTITQDGKDFGVRYFGLPAGHEFAAF-LEDIVD------------VSREETNLMDETK 126
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASE----LEGKVKLGAVDATVHQRIAG 204
+ + D+ ++ F P C +C K A E +GK+ V+A + A
Sbjct: 127 QAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWAD 186
Query: 205 EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
++N+ P I G D E+ G + + L+
Sbjct: 187 QYNVMAVPKIVIQVNG----EDRVEFEGAYPEKMFLEKLLSA 224
Score = 61.3 bits (148), Expect = 6e-11
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 19 IKLTTSNFDDKVIK-----SDEVWIVEYYAPWCGHCQSFKDEYMKLAT----ALKGVVKV 69
+ +N D+ + +V I+ + P C +C K A A KG +
Sbjct: 114 VSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILG 173
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI 121
V A E + + V P + I + + ++GA ++ L A+
Sbjct: 174 DMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225
Score = 28.5 bits (63), Expect = 4.1
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 404 DLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
D+ DV E+ + +V I+ + P C +C K A
Sbjct: 110 DIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFA 160
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 81.6 bits (202), Expect = 3e-19
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
+E+TD NF++ + LV+F+A WC C+ + P E+ A E EGK+ + +D +
Sbjct: 3 PIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDEN 61
Query: 200 QRIAGEFNIRGYPTIKFFSPG 220
+ A + + PT+ F G
Sbjct: 62 PKTAMRYRVMSIPTVILFKDG 82
Score = 66.6 bits (163), Expect = 8e-14
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
+ I++T NFD+ + + +V+++A WC C+ ++A +G + V ++ D
Sbjct: 1 AKPIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVD 59
Query: 76 EEKSLSSSHGVTGFPTVKIFSD 97
E + + V PTV +F D
Sbjct: 60 ENPKTAMRYRVMSIPTVILFKD 81
Score = 36.5 bits (85), Expect = 0.003
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
NFD+ + + +V+++A WC C
Sbjct: 10 NFDE-TLGQHPLVLVDFWAEWCAPC 33
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 82.6 bits (204), Expect = 5e-19
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIW-----------LVEFFAPWCGHCKNLEPH 177
+ + + LT + F K + + ++ +V+F+A WCG CK + P
Sbjct: 13 DTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPI 72
Query: 178 WEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
E+ + E GK+ + V+ +A +F I+ PTI F
Sbjct: 73 LEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMK 115
Score = 65.3 bits (159), Expect = 5e-13
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 16 SDVIKLTTSNFDDKVI-----------KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 64
S I LT + F K+ D+ IV++YA WCG C+ +L+
Sbjct: 22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA 81
Query: 65 GVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK 124
G + + VN D+E L+ G+ PT+ K P GA + + + + + ++
Sbjct: 82 GKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLLKQ 141
Score = 37.5 bits (87), Expect = 0.002
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 393 KDGELPQEEDIDLSDVDLE-DLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHC 443
E PQ I L+ + + E + + D+ IV++YA WCG C
Sbjct: 15 VQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPC 66
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 81.2 bits (201), Expect = 5e-19
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
A+ ++T +V F C HCKN+E +K + V + +VD+
Sbjct: 2 SAIRDITTEAGMAHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ-VAISSVDSE 59
Query: 198 VHQRIAGEFNIRGYPTIKFFSPG 220
+ E PT+ F G
Sbjct: 60 ARPELMKELGFERVPTLVFIRDG 82
Score = 66.6 bits (163), Expect = 7e-14
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
I+ T+ + IV ++ C HC++ + K V + +V+++
Sbjct: 4 IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ-VAISSVDSEARP 62
Query: 79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKG 127
L G PT+ D + + G L+A+ +
Sbjct: 63 ELMKELGFERVPTLVFIRDGKVAKVFSGIMNPR-----ELQALYASIHH 106
Score = 38.5 bits (90), Expect = 6e-04
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 418 FNFDDKVIKSDEVWIVEYYAPWCGHCQSF 446
+ IV ++ C HC++
Sbjct: 9 TEAGMAHFEGLSDAIVFFHKNLCPHCKNM 37
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 80.4 bits (199), Expect = 8e-19
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
A + LTD+NF++ D LV+F+A WCG C+ + P E+ A KV + ++
Sbjct: 1 ATMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE 59
Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
+ +F I PT+ F G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGG 81
Score = 64.6 bits (158), Expect = 3e-13
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+ LT +NF I+ D +V+++A WCG C+ + A A V V +N DE
Sbjct: 2 TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+S G+ PT+ +F
Sbjct: 61 PETTSQFGIMSIPTLILFKG 80
Score = 36.1 bits (84), Expect = 0.004
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
NF I+ D +V+++A WCG C
Sbjct: 9 NFQQ-AIQGDGPVLVDFWAAWCGPC 32
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 80.5 bits (199), Expect = 1e-18
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
A+V++TD++F+ V + LV+F+A CG CK + P E+ A++ EGK + +D
Sbjct: 4 AIVKVTDADFDSKVESGV--QLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE 61
Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
+ A ++ + PT+ F G
Sbjct: 62 NPSTAAKYEVMSIPTLIVFKDG 83
Score = 60.8 bits (148), Expect = 8e-12
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
++K+T ++FD KV V +V+++A CG C+ +LA +G + ++ DE
Sbjct: 5 IVKVTDADFDSKVESG--VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDEN 62
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
S ++ + V PT+ +F D
Sbjct: 63 PSTAAKYEVMSIPTLIVFKD 82
Score = 31.9 bits (73), Expect = 0.10
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
+FD KV V +V+++A CG C
Sbjct: 12 DFDSKVESG--VQLVDFWATACGPC 34
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 80.0 bits (198), Expect = 1e-18
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
A+V+ TD +F S+ + L +F+APWCG K + P E+ E+ K+K+ +D
Sbjct: 2 AIVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE 59
Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
+Q AG++ + PT+ G
Sbjct: 60 NQETAGKYGVMSIPTLLVLKDG 81
Score = 60.0 bits (146), Expect = 2e-11
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
++K T +F + S+ V + +++APWCG + +E L + +K+ ++
Sbjct: 3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEE---LDQEMGDKLKIVKIDV 57
Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
DE + + +GV PT+ + D
Sbjct: 58 DENQETAGKYGVMSIPTLLVLKD 80
Score = 31.9 bits (73), Expect = 0.11
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
+F + S+ V + +++APWCG
Sbjct: 10 SFSAET--SEGVVLADFWAPWCGPS 32
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 78.9 bits (195), Expect = 5e-18
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT 197
+V ++ + K V D + +++F+A WCG CK + P +EK + G KV VD
Sbjct: 16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75
Query: 198 VHQRIAGEFNIRGYPTIKFFSPG 220
+IA E IR PT FF G
Sbjct: 76 EQSQIAQEVGIRAMPTFVFFKNG 98
Score = 66.6 bits (163), Expect = 1e-13
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE 76
V +++ + +V D+V +++++A WCG C+ + K++ G V V+ DE
Sbjct: 17 VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE 76
Query: 77 EKSLSSSHGVTGFPTVKIFSD 97
+ ++ G+ PT F +
Sbjct: 77 QSQIAQEVGIRAMPTFVFFKN 97
Score = 38.9 bits (91), Expect = 5e-04
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
+ +V D+V +++++A WCG C+
Sbjct: 24 DQFKQVTGGDKVVVIDFWATWCGPCK 49
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 77.4 bits (191), Expect = 1e-17
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
V+ L NF+ S +I +V+F+A WC C L P E+ A + +V G +++ +
Sbjct: 1 VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDEN 58
Query: 200 QRIAGEFNIRGYPTIKFFSPG 220
IA + + PT+ FF G
Sbjct: 59 PDIAARYGVMSLPTVIFFKDG 79
Score = 63.5 bits (155), Expect = 8e-13
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKGVVKVG 70
VI L + NFD + S E+ +V+++A WC C ++Y + V G
Sbjct: 1 VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--------VGFG 51
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSD 97
+N+DE +++ +GV PTV F D
Sbjct: 52 KLNSDENPDIAARYGVMSLPTVIFFKD 78
Score = 36.5 bits (85), Expect = 0.002
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
NFD + S E+ +V+++A WC C
Sbjct: 8 NFDS-FLASHEIAVVDFWAEWCAPC 31
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 78.3 bits (193), Expect = 1e-17
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV- 198
++ +T F +L+ D ++ ++ C HC P +A+ E++ + + + +
Sbjct: 18 LIYITPEEFRQLL--QGDA-ILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIG 74
Query: 199 ------HQRIAGEFNIRGYPTIKFFSPG 220
+ + + G PT+ F+ G
Sbjct: 75 ERELSAARLEMNKAGVEGTPTLVFYKEG 102
Score = 63.3 bits (154), Expect = 2e-12
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK-------DEYMKLATALKGVVK 68
+I +T F ++++ D + + Y+ C HC E
Sbjct: 16 GRLIYITPEEFR-QLLQGDAI--LAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSL 72
Query: 69 VGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
+G + + GV G PT+ + +
Sbjct: 73 IGERELSAARLEMNKAGVEGTPTLVFYKE 101
Score = 36.7 bits (85), Expect = 0.004
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 405 LSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
L D L + +EF ++++ D + + Y+ C HC
Sbjct: 13 LEDGRLIYITPEEF---RQLLQGDAI--LAVYSKTCPHCH 47
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 77.4 bits (191), Expect = 1e-17
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 128 GKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG 187
G S ++ +LT+ + + +D +++F+A WCG CK ++PH K
Sbjct: 2 GHHHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP- 60
Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
V+ D IA E + PT G
Sbjct: 61 DVRFVKCDVDESPDIAKECEVTAMPTFVLGKDG 93
Score = 66.6 bits (163), Expect = 8e-14
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAV 72
SY+ + KLT +IK ++ ++++YA WCG C+ + KL A V+
Sbjct: 9 SSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKC 67
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSD 97
+ DE ++ VT PT + D
Sbjct: 68 DVDESPDIAKECEVTAMPTFVLGKD 92
Score = 36.2 bits (84), Expect = 0.004
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+IK ++ ++++YA WCG C+ + KL A
Sbjct: 21 TEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP 60
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 77.9 bits (192), Expect = 1e-17
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCG--------------HCKNLEPHWEKAA 182
S ++ LTD +F+ V +D LV+F+A WCG CK + P ++ A
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61
Query: 183 SELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
E +GK+ + ++ + A ++ IRG PT+ F G
Sbjct: 62 DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
Score = 62.9 bits (153), Expect = 2e-12
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMK--------------LATAL 63
+I LT +FD V+K+D +V+++A WCG + D +A
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 64 KGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
+G + V +N D+ + +G+ G PT+ +F +
Sbjct: 65 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 98
Score = 36.7 bits (85), Expect = 0.003
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCG 441
+FD V+K+D +V+++A WCG
Sbjct: 12 SFDTDVLKADGAILVDFWAEWCG 34
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 79.7 bits (196), Expect = 4e-17
Identities = 20/194 (10%), Positives = 56/194 (28%), Gaps = 27/194 (13%)
Query: 131 GGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL---EG 187
+ V+L + +FEK V +V+F + +
Sbjct: 9 HHGSVTCTGCVDLDELSFEKTVERFPYS-VVKFDIASP--YGEKHEAFTAFSKSAHKATK 65
Query: 188 KVKLGAVDATVH-----QRIAGEFNI--RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIV 240
+ + V + + + + + + +P+I F + + T ++
Sbjct: 66 DLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQ-LPSHVDVTLDNLK 124
Query: 241 TWALNKYTENVPP-----PEIKQIVSEATFKEACEDHPLCIV-----AVLPHILDCQSSC 290
+ ++ T E +++ + + L ++ Q
Sbjct: 125 AF-VSANTPLYIGRDGCIKEFNEVLKN--YANIPDAEQLKLIEKLQAKQEQLTDPEQQQN 181
Query: 291 RNNYLEILQKLGDK 304
YL ++K+ +
Sbjct: 182 ARAYLIYMRKIHEV 195
Score = 62.8 bits (152), Expect = 2e-11
Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 16/113 (14%)
Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG------VVKV 69
+ + L +F+ K ++ +V++ + + + + + + V
Sbjct: 16 TGCVDLDELSFE-KTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATV 72
Query: 70 GAVNADEE--KSLSSSHGVT--GFPTVKIF---SDKRNPTPYQGARTADAIID 115
G + E K+L + V FP++ +F +D+ P T D +
Sbjct: 73 GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKA 125
Score = 32.7 bits (74), Expect = 0.18
Identities = 5/42 (11%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
DE +F+ K ++ +V++ + + + + +
Sbjct: 22 DELSFE-KTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSA 60
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 75.1 bits (185), Expect = 8e-17
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 139 AVVELTDSNFEKLVYNSDDIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
V E+ F +V + D +++ F WCG K + P +EK A E + L +D
Sbjct: 6 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFL-KLDCN 64
Query: 198 V-HQRIAGEFNIRGYPTIKFF 217
++ +A E IR PT K
Sbjct: 65 QENKTLAKELGIRVVPTFKIL 85
Score = 59.3 bits (144), Expect = 3e-11
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 16 SDVIKLTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
V ++ F V + D+ +++ + WCG ++ +Y KLA V+ + ++
Sbjct: 5 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFL-KLDC 63
Query: 75 DEE-KSLSSSHGVTGFPTVKIFSD 97
++E K+L+ G+ PT KI +
Sbjct: 64 NQENKTLAKELGIRVVPTFKILKE 87
Score = 31.5 bits (72), Expect = 0.14
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 419 NFDDKVIKS-DEVWIVEYYAPWCGHCQ 444
F V + D+ +++ + WCG +
Sbjct: 14 TFWPIVKAAGDKPVVLDMFTQWCGPSK 40
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 75.1 bits (185), Expect = 1e-16
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
T + + + LV+FFA WCG C+ L A V VD +
Sbjct: 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNG 66
Query: 201 RIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
A + + P + F ++ G S+
Sbjct: 67 NAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSR 103
Score = 58.6 bits (142), Expect = 7e-11
Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
T +++ ++ + +V+++A WCG CQ +A A V V+ D+
Sbjct: 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNG 66
Query: 79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
+ + ++GV+ P + + N +T D + + I+ ++
Sbjct: 67 NAADAYGVSSIPALFFVKKEGNE-----IKTLDQFVGADVSRIKADIE 109
Score = 37.0 bits (86), Expect = 0.002
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
+++ ++ + +V+++A WCG CQ
Sbjct: 14 ALLNRIKEAPGLVLVDFFATWCGPCQ 39
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 75.1 bits (185), Expect = 1e-16
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 139 AVVELTDSNFEKLVYNSDDIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
V E+ F +V + D +++ F WCG CK + P +EK A E + L +D
Sbjct: 19 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDCN 77
Query: 198 VH-QRIAGEFNIRGYPTIKFF 217
+ +A E IR PT K
Sbjct: 78 QENKTLAKELGIRVVPTFKIL 98
Score = 60.1 bits (146), Expect = 2e-11
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 16 SDVIKLTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
V ++ F V + D+ +++ + WCG C++ +Y KLA V+ + ++
Sbjct: 18 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDC 76
Query: 75 DEE-KSLSSSHGVTGFPTVKIFSD 97
++E K+L+ G+ PT KI +
Sbjct: 77 NQENKTLAKELGIRVVPTFKILKE 100
Score = 31.6 bits (72), Expect = 0.16
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 419 NFDDKVIKS-DEVWIVEYYAPWCGHCQ 444
F V + D+ +++ + WCG C+
Sbjct: 27 TFWPIVKAAGDKPVVLDMFTQWCGPCK 53
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 74.7 bits (184), Expect = 2e-16
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
+VV++ + + + D + + F A WCG CK +E EK A E VK VDA
Sbjct: 20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADN 78
Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
+ I + + PT G
Sbjct: 79 NSEIVSKCRVLQLPTFIIARSG 100
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
Y V+ + + ++ D + + + A WCG C++ + K+A VK V+
Sbjct: 17 RYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT-VKFAKVD 75
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
AD + S V PT I
Sbjct: 76 ADNNSEIVSKCRVLQLPTFIIARS 99
Score = 35.1 bits (81), Expect = 0.012
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
++ D + + + A WCG C+
Sbjct: 28 EQFRNIMSEDILTVAWFTAVWCGPCK 53
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 74.5 bits (183), Expect = 3e-16
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 137 SKAVVELTDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAV 194
++ + S + + D + L+ + + E ++
Sbjct: 16 TRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVA 75
Query: 195 DATVHQRIAGEFNIRGYPTIKFFSPG 220
D + I FN+R +P F+ G
Sbjct: 76 DLEQSEAIGDRFNVRRFPATLVFTDG 101
Score = 57.1 bits (138), Expect = 3e-10
Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 21 LTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEK 78
+ S DD + + D V ++ +L +V + ++ +
Sbjct: 22 VEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE 81
Query: 79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
++ V FP +F+D + G ++
Sbjct: 82 AIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLT 118
Score = 32.5 bits (74), Expect = 0.13
Identities = 4/30 (13%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 416 DEFNFDDKVIKS-DEVWIVEYYAPWCGHCQ 444
+ DD + + D V ++
Sbjct: 23 EASTVDDWIKRVGDGVILLSSDPRRTPEVS 52
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 72.1 bits (177), Expect = 1e-15
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
+G + + + ++ F C +C ++ + E EGK +
Sbjct: 4 EGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYY 63
Query: 194 --VDATVHQRIAGEFNIRGYPTIKFF 217
++ + +A +++ PT F
Sbjct: 64 ARLEEEKNIDLAYKYDANIVPTTVFL 89
Score = 61.7 bits (150), Expect = 6e-12
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
+ + + K I+ + C +C + E ++ +G + +EEK
Sbjct: 11 FQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK 70
Query: 79 S--LSSSHGVTGFPTVKIFSDKRNPT-PYQGARTADAIIDV 116
+ L+ + PT + N +QG + I +
Sbjct: 71 NIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETI 111
Score = 39.4 bits (92), Expect = 4e-04
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 412 DLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
+ + + K I+ + C +C
Sbjct: 10 NFQSINVVENLEEAKEGIPTIIMFKTDTCPYCV 42
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 71.2 bits (175), Expect = 2e-15
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
T + + L+ CG C + V+ + Q IA
Sbjct: 7 TIEELATYI-EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIA 64
Query: 204 GEFNIRGYPTIKFFSPG 220
G + + PT+ F G
Sbjct: 65 GRYAVFTGPTVLLFYNG 81
Score = 64.6 bits (158), Expect = 3e-13
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
+ T I+ ++ ++ CG C + + V+ + +
Sbjct: 2 MNTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNY-VEKIEILLQDM 60
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
+ ++ + V PTV +F +
Sbjct: 61 QEIAGRYAVFTGPTVLLFYN 80
Score = 37.3 bits (87), Expect = 0.001
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
+E I+ ++ ++ CG C + +
Sbjct: 8 IEELA---TYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLE 45
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 70.4 bits (173), Expect = 4e-15
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 144 TDSNFEKLVYNSDDIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
++ + + + +++FFA WCG CK + P + +++ V + VD + I
Sbjct: 7 DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDI 66
Query: 203 AGEFNIRGYPTIKFF 217
A E+NI PT F
Sbjct: 67 AMEYNISSMPTFVFL 81
Score = 57.7 bits (140), Expect = 9e-11
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 18 VIKLTT-SNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
V ++ ++ D ++ K S ++ +++++A WCG C+ + ++L+T V V V+ D
Sbjct: 2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD 61
Query: 76 EEKSLSSSHGVTGFPTVKIFSD 97
E + ++ + ++ PT +
Sbjct: 62 ECEDIAMEYNISSMPTFVFLKN 83
Score = 33.4 bits (77), Expect = 0.026
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 415 KDEFNFDDKVIK-SDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
KD+ + D ++ K S ++ +++++A WCG C+ ++ LKV
Sbjct: 6 KDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKV 58
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 68.8 bits (169), Expect = 6e-15
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
+ F +P C HC + E+ A+E+ V++ ++ + + A E+ I PTI
Sbjct: 6 IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGD 65
Query: 220 G 220
Sbjct: 66 V 66
Score = 54.2 bits (131), Expect = 8e-10
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
I + +P C HC + K ++A + V+V +N E + +G+ PT+ I D
Sbjct: 6 IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGD 65
Score = 28.0 bits (63), Expect = 1.7
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 432 IVEYYAPWCGHC 443
I + +P C HC
Sbjct: 6 IELFTSPMCPHC 17
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 69.3 bits (170), Expect = 1e-14
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 144 TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
+ + ++ + +V+F A WCG CK + P +E +++ GKV VD
Sbjct: 9 SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA 68
Query: 201 RIAGEFNIRGYPTIKFF 217
+A I PT +
Sbjct: 69 AVAEAAGITAMPTFHVY 85
Score = 57.0 bits (138), Expect = 2e-10
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 17 DVIKLTT-SNFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAV 72
VI + + + +D ++ K + +V++ A WCG C+ + L+ G V V
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSD 97
+ D +++ + G+T PT ++ D
Sbjct: 63 DVDAVAAVAEAAGITAMPTFHVYKD 87
Score = 31.5 bits (72), Expect = 0.17
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 419 NFDDKVIK---SDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKV 459
+D ++ K + +V++ A WCG C+ + ++Y LKV
Sbjct: 12 AWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 68.9 bits (169), Expect = 1e-14
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
T S F+ + D + +V+F+A WCG CK + P EK + + +
Sbjct: 3 HHHHMVTQFKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYK 60
Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPG 220
+D +A + + PT+ F G
Sbjct: 61 LDVDELGDVAQKNEVSAMPTLLLFKNG 87
Score = 60.0 bits (146), Expect = 2e-11
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
V + T++ D I D++ +V++YA WCG C+ K + ++ DE
Sbjct: 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDEL 66
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
++ + V+ PT+ +F +
Sbjct: 67 GDVAQKNEVSAMPTLLLFKN 86
Score = 33.8 bits (78), Expect = 0.027
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
EF D I D++ +V++YA WCG C+
Sbjct: 14 ASEF---DSAIAQDKLVVVDFYATWCGPCK 40
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 68.3 bits (167), Expect = 5e-14
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 130 SGGRKGSSKAVVELTD-SNFEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG 187
+G + + AV E+ FE+L+ + + +V F+APW C + + A EL
Sbjct: 4 AGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP- 62
Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
+V ++A ++ ++ I PT FF
Sbjct: 63 QVSFVKLEAEGVPEVSEKYEISSVPTFLFF 92
Score = 60.6 bits (147), Expect = 3e-11
Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 9/140 (6%)
Query: 14 SYSDVIKLTT-SNFDDKV-IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
+ + V ++ + F++ + +K+ + +V ++APW C + +LA L V
Sbjct: 10 AVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVS-FVK 68
Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSG 131
+ A+ +S + ++ PT F + + GA L Q+ S
Sbjct: 69 LEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAP------ELTKKVQRHASSGSF 122
Query: 132 GRKGSSKAVVELTDSNFEKL 151
K + S+ +KL
Sbjct: 123 LPSAKVKVDTDPNSSSVDKL 142
Score = 34.1 bits (78), Expect = 0.037
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 415 KDEFNFDDKV-IKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
F++ + +K+ + +V ++APW C + +LA
Sbjct: 18 GSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAK 59
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 67.0 bits (164), Expect = 6e-14
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 140 VVELTDS---NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVD 195
V+E+ D + D + ++ F W CK L+ +E ++E V ++D
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61
Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPG 220
A + I+ F I P G
Sbjct: 62 ADENSEISELFEISAVPYFIIIHKG 86
Score = 53.9 bits (130), Expect = 2e-09
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 18 VIKLTTS---NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-GVVKVGAVN 73
VI++ + D++ ++ ++ W C++ K + ++ V +++
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
ADE +S ++ P I
Sbjct: 62 ADENSEISELFEISAVPYFIIIHK 85
Score = 38.1 bits (89), Expect = 9e-04
Identities = 5/40 (12%), Positives = 20/40 (50%)
Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
+++F + D++ ++ ++ W C++ K + ++
Sbjct: 8 QEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAIS 47
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 65.8 bits (161), Expect = 9e-14
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI 214
+ F +P C +C ++A E K+ + +D V + A E+ + P I
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAI 59
Score = 54.2 bits (131), Expect = 9e-10
Identities = 9/59 (15%), Positives = 23/59 (38%)
Query: 36 VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94
V I + +P C +C + + + V ++ ++ + +G+ P + I
Sbjct: 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61
Score = 28.8 bits (65), Expect = 0.87
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 430 VWIVEYYAPWCGHC 443
V I + +P C +C
Sbjct: 3 VNIEVFTSPTCPYC 16
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 66.2 bits (162), Expect = 1e-13
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 135 GSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV 194
V +T + + +++ +V+FFA WCG CK + P +E+ + K+ V
Sbjct: 5 HHHHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKV 63
Query: 195 DATVHQRIAGEFNIRGYPTIKFF 217
D + + NI PT K +
Sbjct: 64 DVDEVSEVTEKENITSMPTFKVY 86
Score = 60.0 bits (146), Expect = 1e-11
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
V +T+ D +I +E+ IV+++A WCG C+ Y + + +V V+ DE
Sbjct: 10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV-FIKVDVDEV 68
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
++ +T PT K++ +
Sbjct: 69 SEVTEKENITSMPTFKVYKN 88
Score = 35.0 bits (81), Expect = 0.009
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
+ EF D +I +E+ IV+++A WCG C+ Y + +
Sbjct: 16 QAEF---DSIISQNELVIVDFFAEWCGPCKRIAPFYEECSK 53
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 65.7 bits (161), Expect = 1e-13
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 141 VELTDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
V T ++ EKL+ + + +V+FFA WCG C+N+ P E A E+ +V+ VD +
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQN 61
Query: 200 QRIAGEFNIRGYPTIKFF 217
+ A ++++ PT F
Sbjct: 62 EEAAAKYSVTAMPTFVFI 79
Score = 52.6 bits (127), Expect = 5e-09
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 22 TTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
T ++ + + ++ + +V+++A WCG C++ + LA + V V+ D+ +
Sbjct: 6 TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVE-FAKVDVDQNEEA 64
Query: 81 SSSHGVTGFPTVKIFSD 97
++ + VT PT D
Sbjct: 65 AAKYSVTAMPTFVFIKD 81
Score = 30.7 bits (70), Expect = 0.26
Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 419 NFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
+ + + ++ + +V+++A WCG C++ + LA
Sbjct: 9 DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAK 46
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 65.8 bits (161), Expect = 2e-13
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 137 SKAVVELTDSNFEKLVYNSDDIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD 195
S+ + D + E L+ + +V+FFA WCG CK + P +++ + + VD
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVD 70
Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPG 220
+ A ++NI PT G
Sbjct: 71 VDKLEETARKYNISAMPTFIAIKNG 95
Score = 57.0 bits (138), Expect = 2e-10
Identities = 14/84 (16%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 16 SDVIKLTT-SNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
S++I+L + + + + +++ +V+++A WCG C++ + +L+ V+
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD--AIFVKVD 70
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
D+ + + + ++ PT +
Sbjct: 71 VDKLEETARKYNISAMPTFIAIKN 94
Score = 33.5 bits (77), Expect = 0.033
Identities = 8/46 (17%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 415 KDEFNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459
K + + + + + +++ +V+++A WCG C++ + +L+
Sbjct: 19 KQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA 64
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 65.4 bits (160), Expect = 2e-13
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
V+ +FEK S + +V+F A WC CK + P + + A + V VD +
Sbjct: 12 VDTWKEHFEKGK-GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELK 69
Query: 201 RIAGEFNIRGYPTIKFF 217
+A E+N+ PT F
Sbjct: 70 AVAEEWNVEAMPTFIFL 86
Score = 52.7 bits (127), Expect = 7e-09
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
+ +F+ K S ++ +V++ A WC C+ + +LA V V+ DE K
Sbjct: 12 VDTWKEHFE-KGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVT-FLKVDVDELK 69
Query: 79 SLSSSHGVTGFPTVKIFSDKR 99
+++ V PT D +
Sbjct: 70 AVAEEWNVEAMPTFIFLKDGK 90
Score = 31.5 bits (72), Expect = 0.15
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 422 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
+K S ++ +V++ A WC C+ + +LA
Sbjct: 20 EKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAK 53
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 65.2 bits (159), Expect = 4e-13
Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 136 SSKAVVELTDSNFEKLVYNS---DDIWLVEFFAPWCGHCKNLEP--HWEKAASELEGKVK 190
+ + + +F + + + D + V+ F WCG CK L + ++ +
Sbjct: 4 AQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHF 63
Query: 191 LGA---VDATVHQRIAGEFNIRGYPTIKFFSPG 220
+ ++ + ++ + YPT+ F +
Sbjct: 64 VNLKMDMEKGEGVELRKKYGVHAYPTLLFINSS 96
Score = 54.4 bits (131), Expect = 2e-09
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 16 SDVIKLTTSNFDDKVIKS---DEVWIVEYYAPWCGHCQ-----SFKDEYMKLATALKGVV 67
+D I +F + + ++ D++ V+ + WCG C+ FKD +A
Sbjct: 6 ADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDS--LVADYFNRHF 63
Query: 68 KVGAVNAD--EEKSLSSSHGVTGFPTVKIFSDKRNP-TPYQGARTADAIIDVALEAIRQK 124
++ + E L +GV +PT+ + GA A ++ + +
Sbjct: 64 VNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE 123
Query: 125 VK 126
Sbjct: 124 GH 125
Score = 30.1 bits (68), Expect = 0.57
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 397 LPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
L Q + I ++ + K + D++ V+ + WCG C+
Sbjct: 3 LAQADGIAFRELSFPEALK-------RAEVEDKLLFVDCFTTWCGPCK 43
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 62.7 bits (153), Expect = 2e-12
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 129 KSGGRKGSSKAVVELTDSNF--EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE 186
+ +V ++ E L D + +V+F A WCG K ++P + + +
Sbjct: 2 RGSHHHHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS 61
Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
V VD Q +A E ++ PT +FF G
Sbjct: 62 -NVIFLEVDVDDCQDVASECEVKSMPTFQFFKKG 94
Score = 55.8 bits (135), Expect = 5e-10
Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 14 SYSDVIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
+ V ++ + + + + D++ +V++ A WCG + K + L+ V+
Sbjct: 9 HHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLE 67
Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
V+ D+ + ++S V PT + F + + GA
Sbjct: 68 VDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGA 103
Score = 30.8 bits (70), Expect = 0.34
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 415 KDEFNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLA 454
+ + F + + + D++ +V++ A WCG + K + L+
Sbjct: 17 ESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLS 57
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 62.7 bits (153), Expect = 2e-12
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 135 GSSKAVVEL-TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVK 190
AV+ T F+ + ++ + +++F A WCG C+ + P + + A + G +
Sbjct: 3 AEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIF 62
Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFF 217
L VD + +A +N+ PT F
Sbjct: 63 L-KVDVDELKDVAEAYNVEAMPTFLFI 88
Score = 54.3 bits (131), Expect = 2e-09
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 16 SDVIKLTT-SNFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
VI T FD + + ++ I+++ A WCG C+ + + A G +
Sbjct: 6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI-FLK 64
Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSD 97
V+ DE K ++ ++ V PT D
Sbjct: 65 VDVDELKDVAEAYNVEAMPTFLFIKD 90
Score = 28.8 bits (65), Expect = 1.4
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 419 NFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
FD + + ++ I+++ A WCG C+ + + A
Sbjct: 16 EFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAK 55
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 63.2 bits (154), Expect = 2e-12
Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 140 VVELTDSNF--EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
+EL ++ + + +++F A WC C ++ +++ + V L +D
Sbjct: 22 YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN--YYYVTLVDIDVD 79
Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG 232
+H ++ + NI+ PT +F+ + G
Sbjct: 80 IHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEG 114
Score = 55.5 bits (134), Expect = 1e-09
Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 12 YPSYSDVIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
+ S I+L + ++V S + ++++ A WC C K+ + V +
Sbjct: 16 FQGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY--VTL 73
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
++ D L+ H + PT + + + + I + +
Sbjct: 74 VDIDVDIHPKLNDQHNIKALPTFEFYFNLN-----NEWVLVHTVEGANQNDIEKAFQ 125
Score = 30.5 bits (69), Expect = 0.46
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 415 KDEFNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459
K+ + + + + ++++ A WC C K+ + V
Sbjct: 26 KNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYYV 71
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 63.2 bits (154), Expect = 2e-12
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 144 TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
F+ + + + +++F A WCG C+ + P + + A + G V L VD +
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVDELK 79
Query: 201 RIAGEFNIRGYPTIKFF 217
+A ++N+ PT F
Sbjct: 80 EVAEKYNVEAMPTFLFI 96
Score = 52.4 bits (126), Expect = 1e-08
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 16 SDVIKLTT-SNFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
VI FD ++ K + +V I+++ A WCG C+ + + A G V
Sbjct: 14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLK 72
Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSD 97
V+ DE K ++ + V PT D
Sbjct: 73 VDVDELKEVAEKYNVEAMPTFLFIKD 98
Score = 29.7 bits (67), Expect = 0.81
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 415 KDEFNFD-DKVIKSDEVWIVEYYAPWCGHCQ 444
KDEF+ K ++ +V I+++ A WCG C+
Sbjct: 22 KDEFDAQMTKAKEAGKVVIIDFTASWCGPCR 52
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 62.3 bits (152), Expect = 2e-12
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 139 AVVEL-TDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
V + +D +F+ + + + +V+F CG C + P + +++ + VD
Sbjct: 2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDV 60
Query: 197 TVHQRIAGEFNIRGYPTIKFF 217
Q A NI PT +FF
Sbjct: 61 HQCQGTAATNNISATPTFQFF 81
Score = 55.4 bits (134), Expect = 6e-10
Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 18 VIKLTT-SNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
V + + +F ++ + + +V++ CG C + ++ V V+
Sbjct: 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAV-FLEVDVH 61
Query: 76 EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
+ + ++++ ++ PT + F +K YQGA
Sbjct: 62 QCQGTAATNNISATPTFQFFRNKVRIDQYQGA 93
Score = 33.8 bits (78), Expect = 0.023
Identities = 5/41 (12%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 415 KDEFNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLA 454
+ +F ++ + + +V++ CG C + ++
Sbjct: 7 GSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMS 47
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 63.4 bits (154), Expect = 3e-12
Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 20 KLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
KLT+ D+ IKS ++V ++ + C D K ++ L + + V+ D+
Sbjct: 7 KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQT 66
Query: 78 KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV 116
+ ++ P+ F + ++ G+ +
Sbjct: 67 AVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGS 105
Score = 62.7 bits (152), Expect = 4e-12
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD 195
S K V + S EK++ ++ F C L+ K +S+L + VD
Sbjct: 10 SKKEVDQAIKSTAEKVL-------VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVD 62
Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPG 220
F+I P+ FF G
Sbjct: 63 VDQTAVYTQYFDISYIPSTVFFFNG 87
Score = 31.1 bits (70), Expect = 0.36
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 422 DKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
D+ IKS ++V ++ + C D K ++ L
Sbjct: 15 DQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS 53
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 61.5 bits (150), Expect = 4e-12
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 140 VVELTDSNF--EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
V ++ E L D + +V+F A WCG CK ++P + + + V VD
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVD 60
Query: 198 VHQRIAGEFNIRGYPTIKFF 217
Q +A E ++ PT +FF
Sbjct: 61 DCQDVASESEVKSMPTFQFF 80
Score = 54.6 bits (132), Expect = 1e-09
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 18 VIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
V ++ + + + + D++ +V++ A WCG C+ K + L+ V+ V+ D
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVD 60
Query: 76 EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
+ + ++S V PT + F + + GA
Sbjct: 61 DCQDVASESEVKSMPTFQFFKKGQKVGEFSGA 92
Score = 28.8 bits (65), Expect = 1.4
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 415 KDEFNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
+ + F + + + D++ +V++ A WCG C+ K + L+
Sbjct: 6 ESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSE 47
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 62.2 bits (151), Expect = 5e-12
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 8/112 (7%)
Query: 140 VVELTDSNFEKLVYNSD-DIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
+ E++ + + V N++ D+W ++ + C + H A + + K
Sbjct: 12 LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIV- 69
Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSAS--DAQEYNGGRTSQDIVTWALNKY 247
++ PTI + G E G + + W L++
Sbjct: 70 --NSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119
Score = 46.0 bits (109), Expect = 2e-06
Identities = 9/87 (10%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 13 PSYSDVIKLTTSNFDDKVIKSDE-VW-IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
+ ++ +++ + + ++V +++ +W ++ Y C LA K
Sbjct: 7 GKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFV 65
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSD 97
+ + PT+ ++ +
Sbjct: 66 KAIVNS---CIEHYHDNCLPTIFVYKN 89
Score = 30.2 bits (68), Expect = 0.63
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 419 NFDDKVIKSDE-VW-IVEYYAPWCGHCQSFKDEYMKLAT 455
+ ++V +++ +W ++ Y C LA
Sbjct: 19 QYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLAR 57
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 64.8 bits (157), Expect = 5e-12
Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 20/238 (8%)
Query: 139 AVVELTDS-NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
E+ ++ + + DD+ ++ F G ++ AA+ L K T
Sbjct: 7 PSKEILTLKQVQEFLKDGDDVVILGVFQ---GVGDPGYLQYQDAANTLREDYKFHH---T 60
Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE----YNGGRTSQDIVTWALNKYTENVPP 253
IA + + +S + + G + I + + V
Sbjct: 61 FSTEIAKFLKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGH 120
Query: 254 PEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWI 313
+ + PL +V + + + ++ + + +
Sbjct: 121 ------RKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTF--A 172
Query: 314 WSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFLRDLSYGR 370
++ L + G A + + K+++ F D + EF+ G+
Sbjct: 173 IADEEDYATEVKDLGLSESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKKGK 230
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 61.7 bits (150), Expect = 6e-12
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)
Query: 140 VVELTDSNFEKLVYNSD-DIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
+ E++ + + V N++ D+W ++ + C + H A + + K
Sbjct: 5 LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIV- 62
Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSAS--DAQEYNGGRTSQDIVTWALNKY 247
++ PTI + G A E G + + W L +
Sbjct: 63 --NSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112
Score = 45.9 bits (109), Expect = 2e-06
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 15 YSDVIKLTTSNFDDKVIKSDE-VW-IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAV 72
+ ++ +++ + + ++V ++E VW I+ Y C LA K
Sbjct: 2 FGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE-TKFVKA 60
Query: 73 NADEEKSLSSSHGVTGFPTVKIFSD 97
+ + PT+ ++ +
Sbjct: 61 IVNS---CIQHYHDNCLPTIFVYKN 82
Score = 30.9 bits (70), Expect = 0.33
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 419 NFDDKVIKSDE-VW-IVEYYAPWCGHCQSFKDEYMKLA 454
+ ++V ++E VW I+ Y C LA
Sbjct: 12 QYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLA 49
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 61.2 bits (149), Expect = 9e-12
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 128 GKSGGRKGSSKAVVEL-TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAAS 183
S + V+ + + + + + + +++F A WCG C+ + P + A
Sbjct: 2 AASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK 61
Query: 184 ELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
+ V L VD + IA +F++ PT F
Sbjct: 62 KFPNAVFL-KVDVDELKPIAEQFSVEAMPTFLFM 94
Score = 54.7 bits (132), Expect = 2e-09
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 16 SDVIKLTT-SNFDD---KVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
++VI + + + + + ++ ++++ A WCG C+ + LA V
Sbjct: 12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAV-FLK 70
Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSD 97
V+ DE K ++ V PT +
Sbjct: 71 VDVDELKPIAEQFSVEAMPTFLFMKE 96
Score = 31.2 bits (71), Expect = 0.27
Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 415 KDEFNFD-DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
+++ ++ + ++ ++++ A WCG C+ + LA
Sbjct: 20 LEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK 61
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 63.3 bits (153), Expect = 2e-11
Identities = 31/198 (15%), Positives = 58/198 (29%), Gaps = 26/198 (13%)
Query: 43 APWCGHCQSFKDEYMKLA--TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN 100
C + + + ++K+ + + S V PTV +
Sbjct: 39 CETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGGE-- 96
Query: 101 PTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWL 160
+ G + I + +E I + S+ L D+ E L + +
Sbjct: 97 -VRWTGIPAGEEIRAL-VEVIMRL------------SEDESGLEDATKEALKSLKGRVHI 142
Query: 161 VEFFAPWCGHCKNLEPHWEKAASELEG----KVKLGAVDATVHQRIAGEFNIRGYPTI-- 214
P C +C A E + AV+A + IA ++ + P+I
Sbjct: 143 ETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI 202
Query: 215 --KFFSPGSRSASDAQEY 230
G D +Y
Sbjct: 203 NGYLVFVGVPYEEDFLDY 220
Score = 41.7 bits (97), Expect = 2e-04
Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 15/122 (12%)
Query: 23 TSNFDDKVIK-----SDEVWIVEYYAPWCGHCQSFKDEYMKLA----TALKGVVKVGAVN 73
S +D + V I P C +C A V+ AV
Sbjct: 122 ESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVE 181
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI--RQKVKGGKSG 131
A E ++ +GV P++ I + G + +D A R VKG
Sbjct: 182 AYENPDIADKYGVMSVPSIAINGYLV----FVGVPYEEDFLDYVKSAAEGRLTVKGPIRA 237
Query: 132 GR 133
G
Sbjct: 238 GE 239
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 60.1 bits (146), Expect = 2e-11
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
VE + +K S + +V+F A WCG C+ + P + A +L V VD +
Sbjct: 24 VETWNEQLQK-ANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELK 81
Query: 201 RIAGEFNIRGYPTIKFF 217
+A ++ I+ PT F
Sbjct: 82 SVASDWAIQAMPTFMFL 98
Score = 52.8 bits (127), Expect = 8e-09
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 16 SDVIKLTT-SNFDD---KVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
VI T +++ K +S + +V++ A WCG C+ + LA L V+
Sbjct: 16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL-FLK 74
Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSD 97
V+ DE KS++S + PT +
Sbjct: 75 VDTDELKSVASDWAIQAMPTFMFLKE 100
Score = 29.7 bits (67), Expect = 0.75
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 415 KDEFN-FDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
+ +N K +S + +V++ A WCG C+ + LA
Sbjct: 24 VETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAK 65
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 59.0 bits (143), Expect = 8e-11
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 122 RQKVKGGKSGGRKGSSKAVVEL-TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPH 177
R + + V + T +++ + I L F A WCG + + P+
Sbjct: 8 RNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPY 67
Query: 178 WEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
+ + + + +D + + I+ PT F
Sbjct: 68 YIELSENYP-SLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Score = 52.5 bits (126), Expect = 2e-08
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 16 SDVIKLTT-SNFD---DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
+V +TT +D + + ++ + + A WCG + Y++L+ ++
Sbjct: 24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLM-FLV 82
Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSDKR 99
++ DE S+S + PT D +
Sbjct: 83 IDVDELSDFSASWEIKATPTFFFLRDGQ 110
Score = 31.3 bits (71), Expect = 0.27
Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 415 KDEFNFD-DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
K+ ++ + + ++ + + A WCG + Y++L+
Sbjct: 32 KERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSE 73
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 58.3 bits (141), Expect = 1e-10
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 160 LVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATV----HQRIAGEFNIRGYP 212
+++ +A WC CK E + + L V L + T + N+ G P
Sbjct: 35 MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLL-QANVTANDAQDVALLKHLNVLGLP 93
Query: 213 TIKFFSP 219
TI FF
Sbjct: 94 TILFFDG 100
Score = 50.2 bits (120), Expect = 7e-08
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 22 TTSNFDDKVIKSDEVWI-VEYYAPWCGHCQSFKDEYMKLA---TALKGVVKVGA---VNA 74
T + ++++ + ++ YA WC C+ F+ AL V + A N
Sbjct: 18 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 77
Query: 75 DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQ---GARTADAIID 115
++ +L V G PT+ F + P G A+
Sbjct: 78 AQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSA 121
Score = 30.1 bits (68), Expect = 0.61
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 432 IVEYYAPWCGHCQSFKDEYMKLA 454
+++ YA WC C+ F+
Sbjct: 35 MLDLYADWCVACKEFEKYTFSDP 57
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
sapiens}
Length = 252
Score = 57.8 bits (139), Expect = 1e-09
Identities = 41/240 (17%), Positives = 73/240 (30%), Gaps = 22/240 (9%)
Query: 139 AVVELTDS-NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
A V L F+K + + D +V FF + KAAS L + T
Sbjct: 7 ASVPLRTEEEFKKFI-SDKDASIVGFFD---DSFSEAHSEFLKAASNLRDNYRFAH---T 59
Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY---NGGRTSQDIVTWALNKYTENVPPP 254
+ + E++ G I F + + + TS I + P
Sbjct: 60 NVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPH- 118
Query: 255 EIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSC---RNNYLEILQKLGDKYKQKVWG 311
++E + L I RN + + +K D + +
Sbjct: 119 -----MTEDNKDL-IQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFA 172
Query: 312 WIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLL-KGPFSYDGINEFLRDLSYGR 370
+ + + LE P +A+ AK K+ + + + FL+D G
Sbjct: 173 VASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGN 232
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 6e-09
Identities = 68/509 (13%), Positives = 142/509 (27%), Gaps = 126/509 (24%)
Query: 16 SDVIK--LTTSNFDDKVIKSDEV-------WIVEYYAPWCGHCQSF-----KDEYMKLAT 61
D+ K L+ D ++ D V W + Q F + Y L +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMS 96
Query: 62 ALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI 121
+K + + + ++++D + Y +R +
Sbjct: 97 PIKTEQRQ---PSMMTRMYIEQRD-------RLYNDNQVFAKYNVSRLQP------YLKL 140
Query: 122 RQKVKGGKSG------GRKGSSKAVVELTDSNFEKLVYNSDD--IWL--------VEFFA 165
RQ + + G GS K V L K+ D WL
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 166 PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP------------- 212
++P+W + +KL + + Y
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 213 TIKFFSPG------SRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATF- 265
F+ +R + T+ +L+ ++ + P E+K ++ +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTH----ISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 266 ------KEACEDHPLCIVAVLPHILDCQSSCRNNYLEI------------LQKLGDKYKQ 307
+E +P + +++ + + +N+ + L L +
Sbjct: 314 RPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 308 KVWGWIWSEAVAQPDL---ENVLEI---GGFGYPAMAVLNAKKMKYSLLKG---PFSYDG 358
K++ +V P +L + M V+N K KYSL++ +
Sbjct: 373 KMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTI-S 427
Query: 359 INEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEED------------IDLS 406
I +L + + + + N +D D P + I+
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 407 DVDLEDLPK---DEFNF-DDKVIKSDEVW 431
+ + D F F + K+ W
Sbjct: 488 E-RMTLFRMVFLD-FRFLEQKIRHDSTAW 514
Score = 32.5 bits (73), Expect = 0.39
Identities = 31/262 (11%), Positives = 82/262 (31%), Gaps = 84/262 (32%)
Query: 237 QDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPH-------ILDCQSS 289
+DI++ + + +N +++ + KE + I+ + S
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIMS-KDAVSGTLRLFWTLLS 73
Query: 290 CRNNYLEILQKLGDKYKQKVWGWIWS---EAVAQPDL----------------------- 323
+ ++QK ++ + + ++ S QP +
Sbjct: 74 KQEE---MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 324 ----ENVLEI------------------GGFGYPAMA--VLNAKKMKYSLLKGPF----- 354
+ L++ G G +A V + K++ + F
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 355 ---SYDGINEFLRDLSY--GRGHTAPVKGAALPQINQVDAWDGKDGELPQEED-----ID 404
S + + E L+ L Y T+ ++ ++ + + + L + + +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYENCLLV 249
Query: 405 LSDV-DLEDLPKDEFNFDDKVI 425
L +V + + + FN K++
Sbjct: 250 LLNVQNAKAW--NAFNLSCKIL 269
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 48.2 bits (114), Expect = 2e-07
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 161 VEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
+ A WC HC++ + + A ++ T + E I YPT
Sbjct: 17 TMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII---- 72
Query: 221 SRSASDAQEYNGGRTSQDIVTW 242
+ + Y G R+ + +
Sbjct: 73 -----NGRTYTGVRSLEALAVA 89
Score = 43.6 bits (102), Expect = 9e-06
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
Y A WC HCQ K+ + + V + + G+T +PT I
Sbjct: 16 GTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--- 72
Query: 98 KRNPTPYQGARTADAI 113
N Y G R+ +A+
Sbjct: 73 --NGRTYTGVRSLEAL 86
Score = 32.0 bits (72), Expect = 0.10
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 432 IVEYYAPWCGHCQSFKDEYMKLATALKVY 460
Y A WC HCQ K+ + +
Sbjct: 16 GTMYGAYWCPHCQDQKELFGAAFDQVPYV 44
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 48.4 bits (115), Expect = 2e-07
Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 9/111 (8%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL---- 191
+ K + T ++ + + C +C+ +E + +
Sbjct: 10 NIKDLEVTTVVRAQEALDKKETA-TFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSE 68
Query: 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
Q + I P + G + + ++Q+I +
Sbjct: 69 EPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRC----DSSMSAQEIKDF 115
Score = 48.4 bits (115), Expect = 3e-07
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK----V 69
+ D+ T + + E C +C+ F + K +
Sbjct: 10 NIKDLEVTTVVRAQEA-LDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSE 68
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
++ ++ S +G+ P +D + + +A I D
Sbjct: 69 EPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKD 114
Score = 34.2 bits (78), Expect = 0.021
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 422 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV 459
+ + E C +C+ F + K
Sbjct: 23 QEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA 60
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 6e-07
Identities = 71/434 (16%), Positives = 123/434 (28%), Gaps = 164/434 (37%)
Query: 72 VNADEEKSLSSSHGV--TGF--PTV---------KIFSDKRNPTPYQGARTADAIIDVA- 117
++A + L+ SHG PT + F+ K P P +G D A
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFN-KILPEPTEGFAADDEPTTPAE 59
Query: 118 -----LEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDI-------------- 158
L + V+ K G V+ L + FE +DI
Sbjct: 60 LVGKFLGYVSSLVEPSKVG----QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 159 ------WLVEFFAPWCGHCKNLEPHWEKAASEL-----EGKVKLGAVDATVHQRIAGEF- 206
+ + P +K+ S L EG +L A+ F
Sbjct: 116 LVKTKELIKNYIT---ARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----------FG 161
Query: 207 ---NIRGY------------PTIKFF--------SPGSRSASDAQE-YNGGRTSQDIVTW 242
N Y + S R+ DA++ + G +I+ W
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL---NILEW 218
Query: 243 ALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAV-LPHILDCQSSCRNNYLEILQKL 301
L N P + L + + P I Q + +Y+ + L
Sbjct: 219 -LEN-PSNTPDKDY-----------------LLSIPISCPLIGVIQLA---HYVVTAKLL 256
Query: 302 GDKYKQ----------KVWGWIWSEAVAQPD-----LENVLE-------IGGFG---YPA 336
G + G + + A+A+ D +V + IG YP
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 337 MAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAP---VKGAALPQI-NQVDAWDG 392
+ L ++ S L G +P + Q+ + V+
Sbjct: 317 TS-LPPSILEDS-----------------LENNEGVPSPMLSISNLTQEQVQDYVNK--- 355
Query: 393 KDGELPQEEDIDLS 406
+ LP + +++S
Sbjct: 356 TNSHLPAGKQVEIS 369
Score = 38.5 bits (89), Expect = 0.005
Identities = 53/365 (14%), Positives = 98/365 (26%), Gaps = 127/365 (34%)
Query: 2 LLTVASVHC--LYPSYSDVIKLTTSNFDDKVIKSDEVWI--------VEY--YAP--W-- 45
L+ ++ L + D K+ T + I W+ +Y P
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLN---ILE---WLENPSNTPDKDYLLSIPISCPL 240
Query: 46 -----CGH----CQSFKDEYMKLATALKGVVKVG-----AV---NADEEKSL--SSSHGV 86
H + +L + LKG AV D +S S +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 87 TGFPTVKIFSDKRNPTPYQGARTADA--IIDVALEAIRQKVKGGKSGGR-------KGSS 137
T +F + G R +A + + ++ + G +
Sbjct: 301 T-----VLF--------FIGVRCYEAYPNTSLPPSILEDSLENNE--GVPSPMLSISNLT 345
Query: 138 KAVVE--LTDSN----FEKLVY----NSDDIWLVEFFAPWCGH-------CKNLEPHWEK 180
+ V+ + +N K V N +V G L K
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV------SGPPQSLYGLNLTLRK--AK 397
Query: 181 AASELE-GKVKLGAVDATVHQRIAGEFNIRGYP-TIKFFSPGSRSASDAQEYNGGRTSQD 238
A S L+ ++ +R +F+ R P F S ASD ++
Sbjct: 398 APSGLDQSRIPF-------SER-KLKFSNRFLPVASPFHSHLLVPASDLIN---KDLVKN 446
Query: 239 IVTWA----------------LNKYTENVPPPEIKQIVSE-ATFKEACEDHPLCIVAVLP 281
V++ L + ++ + I+ ++ +
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT------- 499
Query: 282 HILDC 286
HILD
Sbjct: 500 HILDF 504
Score = 28.1 bits (62), Expect = 7.8
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 388 DAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFK 447
D W+ D + D+ + + +F + K I E Y+ ++
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR----IRENYSAMI--FETIV 1697
Query: 448 DEYMKLATALK 458
D +K K
Sbjct: 1698 DGKLKTEKIFK 1708
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 48.9 bits (116), Expect = 1e-06
Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 115 DVALEAIRQKVKGGKSGGRKGSSK--AVVELTD-SNFEKLVYNS--DDIWLVEFFAPWCG 169
+ L R++ + V EL F + + +V +
Sbjct: 87 ENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIK 146
Query: 170 HCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS--DA 227
C L A+E VK + A+ + F+ PT+ + G ++
Sbjct: 147 GCDALNSSLICLAAEY-PMVKFCKIKAS-NTGAGDRFSSDVLPTLLVYKGGELLSNFISV 204
Query: 228 QEYNGGRTSQDIVTWALNKY 247
E V LN+Y
Sbjct: 205 TEQLAEEFFTGDVESFLNEY 224
Score = 37.0 bits (85), Expect = 0.008
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 13 PSYSDVIKLTT-SNFDDKVIKSDE--VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
P Y V +L + F + + K + +V Y C + + LA +VK
Sbjct: 109 PRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEY-PMVKF 167
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFSD 97
+ A PT+ ++
Sbjct: 168 CKIKAS-NTGAGDRFSSDVLPTLLVYKG 194
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 46.6 bits (111), Expect = 1e-06
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 160 LVEFFAPWCGHCKNLE----PHWEKAASELEGKVKLGAVDATV--HQRIAGEFNIRGYPT 213
+V F + C +C+ + + LE + + +V Q +A + + G PT
Sbjct: 23 MVYFHSEHCPYCQQMNTFVLSD-PGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPT 81
Query: 214 IKFFSPGSRSASDAQEYNGGRTSQD 238
F P + + + G R +
Sbjct: 82 FVFLVPKAGAWEEVGRLFGSRPRAE 106
Score = 42.3 bits (100), Expect = 4e-05
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 38 IVEYYAPWCGHCQSFKDEYM---KLATALKGVVKVGAVNAD--EEKSLSSSHGVTGFPTV 92
+V +++ C +CQ + ++ L+ V +V+ D E + L+ + V G PT
Sbjct: 23 MVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTF 82
Query: 93 KIFSDKRNPTP----YQGARTADAIIDVALEAIRQK 124
K G+R + L + K
Sbjct: 83 VFLVPKAGAWEEVGRLFGSRPRAEFLKE-LRQVCVK 117
Score = 27.3 bits (61), Expect = 6.2
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 432 IVEYYAPWCGHCQSFKDE 449
+V +++ C +CQ
Sbjct: 23 MVYFHSEHCPYCQQMNTF 40
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 47.3 bits (111), Expect = 4e-06
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
+ A WC HC++ + + A ++ T + E I YPT
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--- 257
Query: 220 GSRSASDAQEYNGGRTSQDIVTWA 243
+ + Y G R+ + + +
Sbjct: 258 ------NGRTYTGVRSLEALAVAS 275
Score = 39.2 bits (90), Expect = 0.002
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
Y A WC HCQ K+ + + V + + G+T +PT I
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--- 257
Query: 98 KRNPTPYQGARTADAI 113
N Y G R+ +A+
Sbjct: 258 --NGRTYTGVRSLEAL 271
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 45.8 bits (108), Expect = 5e-06
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE-FNIRG--YPTIKF 216
+V WCG CK L+P + ++ E V+ + E F+ G P I F
Sbjct: 50 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 109
Query: 217 FSP 219
P
Sbjct: 110 LDP 112
Score = 41.2 bits (96), Expect = 1e-04
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-EEKSLSSSHGVTG--FPTVKI 94
+V + WCG C++ K ++ + + VN + EE+ G P +
Sbjct: 50 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 109
Query: 95 FSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKA 139
P + + Q V+G K + + A
Sbjct: 110 LDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDA 154
Score = 33.1 bits (75), Expect = 0.083
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 432 IVEYYAPWCGHCQSFKDEYMKLATALK 458
+V + WCG C++ K ++ + +
Sbjct: 50 MVIIHKSWCGACKALKPKFAESTEISE 76
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 44.3 bits (104), Expect = 1e-05
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPW--CGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
+ ++ + + +S I ++ F +L + + G++ V A
Sbjct: 19 LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAE 78
Query: 200 QRIAGEFNIRGYPTIKFFSPG 220
+ + F + P++ P
Sbjct: 79 RGLMARFGVAVCPSLAVVQPE 99
Score = 37.0 bits (85), Expect = 0.003
Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYM--KLATALKGVVKVGAVNADEEK 78
+ + DD + S ++ ++ + ++ + +L A G + V A+ E+
Sbjct: 20 VDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAER 79
Query: 79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
L + GV P++ + +R + + +
Sbjct: 80 GLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLA 116
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 43.7 bits (103), Expect = 1e-05
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 160 LVEFFAPWCGHCKNLEPHWE--KAASELEGKVKLGAVDAT---VHQRIAGEFNI---RGY 211
L+ F A WC C+ L+ K + + ++ +D + ++ + G
Sbjct: 33 LLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI 92
Query: 212 PTIKFFSPG----SRSASDAQEYNGGRTSQDIVTWALNKYTE 249
P + + + + Q I + K TE
Sbjct: 93 PAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDF-FAKITE 133
Score = 33.0 bits (75), Expect = 0.072
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 38 IVEYYAPWCGHCQSFK-----DEYMKLATALKGVVKVGAVNADEEKSLSSSHGVT---GF 89
++ + A WC C++ + L VVK+ N D LS ++G G
Sbjct: 33 LLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI 92
Query: 90 PTVKIFSDKRNP 101
P V + +
Sbjct: 93 PAVVVVNSDGKV 104
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 45.0 bits (106), Expect = 1e-05
Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 15/143 (10%)
Query: 115 DVALEAIRQK-----VKGGKSGGRKGSSKAVVELTD-SNFEKLVYNSD-DIWLVEFF-AP 166
+ L R++ + G R G V EL F + + +V
Sbjct: 74 EGCLRKYRRQCMQDMHQKLSFGPRYGF---VYELETGEQFLETIEKEQKVTTIVVNIYED 130
Query: 167 WCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS- 225
C L E A+E VK + A+ F+ PT+ + G ++
Sbjct: 131 GVRGCDALNSSLECLAAEY-PMVKFCKIRASNTGAGD-RFSSDVLPTLLVYKGGELISNF 188
Query: 226 -DAQEYNGGRTSQDIVTWALNKY 247
E V LN+Y
Sbjct: 189 ISVAEQFAEDFFAADVESFLNEY 211
Score = 28.4 bits (63), Expect = 3.8
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 13 PSYSDVIKLTT-SNFDDKVIKSDE--VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
P Y V +L T F + + K + +V Y C + LA +VK
Sbjct: 96 PRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKF 154
Query: 70 GAVNADEEKSLSSSHGVTGFPTVKIFSD 97
+ A PT+ ++
Sbjct: 155 CKIRASNT-GAGDRFSSDVLPTLLVYKG 181
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 41.9 bits (98), Expect = 1e-04
Identities = 16/143 (11%), Positives = 38/143 (26%), Gaps = 24/143 (16%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFF--------APWCGHCKNLEPHWEKAA----- 182
V+ +T N+ L + + + C C + E + A
Sbjct: 16 DDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRS 75
Query: 183 SELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
+ VD ++ + ++ P + + P + E+
Sbjct: 76 QAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPF------- 128
Query: 243 ALNKYTENVPPPEIKQIVSEATF 265
Y ++ P + + F
Sbjct: 129 ----YQYSLVPENAENTLQFGDF 147
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 41.4 bits (97), Expect = 1e-04
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 14/76 (18%)
Query: 158 IWLVEFFAPWCGHCKNLE------PHWEKAASE--------LEGKVKLGAVDATVHQRIA 203
I L + WC C ++ ++ A K +Q +
Sbjct: 50 IGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELK 109
Query: 204 GEFNIRGYPTIKFFSP 219
++ + G+P + F
Sbjct: 110 AQYKVTGFPELVFIDA 125
Score = 33.7 bits (77), Expect = 0.055
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 14/80 (17%)
Query: 36 VWIVEYYAPWCGHCQSFKDEYM---KLATALKG---VVKV--------GAVNADEEKSLS 81
+ + + WC C +D+ + + +V+V + + L
Sbjct: 50 IGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELK 109
Query: 82 SSHGVTGFPTVKIFSDKRNP 101
+ + VTGFP + +
Sbjct: 110 AQYKVTGFPELVFIDAEGKQ 129
Score = 27.2 bits (60), Expect = 8.2
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 430 VWIVEYYAPWCGHCQSFKDE 449
+ + + WC C +D+
Sbjct: 50 IGLFFTGSDWCMWCIKMQDQ 69
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 39.2 bits (91), Expect = 3e-04
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 13/119 (10%)
Query: 143 LTDSNFEKLVYNSD----DIWLVEFFAPWCGHCKNLE----PHWEKAASELEGKVKLGAV 194
+ S+ + D ++ L+ F P C +C + P + V+ +
Sbjct: 1 MRGSHHHHHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQM 60
Query: 195 DATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPP 253
+ + + PT + S + Y G +D L + P
Sbjct: 61 RDPLPPGLELARPVTFTPTFVLMAGDVESGR-LEGYPG----EDFFWPMLARLIGQAEP 114
Score = 37.7 bits (87), Expect = 0.001
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 33 SDEVWIVEYYAPWCGHCQSFKDE----YMKLATALKGVVKVGAVNADEEKSLSSSHGVTG 88
E+ ++ + P C +C + E Y V+ + L + VT
Sbjct: 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTF 76
Query: 89 FPTVKIFSDKRNPTPYQGARTAD 111
PT + + +G D
Sbjct: 77 TPTFVLMAGDVESGRLEGYPGED 99
Score = 28.8 bits (64), Expect = 1.3
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMK 452
+ E+ ++ + P C +C + E
Sbjct: 5 HHHHHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAP 42
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 38.5 bits (89), Expect = 8e-04
Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 15/92 (16%)
Query: 146 SNFEKLVYNSDDIWLVEFFA--------PWCGHCKNLEPHWEKAASELEGKVKLGAVDA- 196
F + V + + +F WC C EP + +
Sbjct: 13 EEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVG 72
Query: 197 ------TVHQRIAGEFNIRGYPTIKFFSPGSR 222
+ + PT+ + +
Sbjct: 73 EKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQK 104
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 39.3 bits (91), Expect = 8e-04
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
+ I +VE F C HC + + + + V+ V A
Sbjct: 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGG 69
Score = 30.5 bits (68), Expect = 0.76
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
+ ++ +VE + C HC F + V+
Sbjct: 23 LAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRF 60
Score = 28.2 bits (62), Expect = 4.0
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 426 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
+ ++ +VE + C HC F +
Sbjct: 23 LAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQ 54
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 38.2 bits (88), Expect = 0.002
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
S + EFF+ +C HC EP + +L K
Sbjct: 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKF 53
Score = 32.0 bits (72), Expect = 0.23
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
S + E+++ +C HC +F+ +L L K
Sbjct: 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKF 53
Score = 28.9 bits (64), Expect = 2.5
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 427 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
S + E+++ +C HC +F+ +L L
Sbjct: 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP 48
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 37.5 bits (86), Expect = 0.004
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
+ + ++EFF +C HC +LEP K A + + L
Sbjct: 22 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYL 59
Score = 32.5 bits (73), Expect = 0.18
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
++ +V ++E++ +C HC + K A + K + +
Sbjct: 22 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYL 59
Score = 29.0 bits (64), Expect = 2.6
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 426 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
++ +V ++E++ +C HC + K A + K
Sbjct: 22 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFK 54
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 36.7 bits (84), Expect = 0.006
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD 195
S AV + + E+LV + F + C ++ K A +++ + VD
Sbjct: 28 SGWAVDQAIVNEDERLV-------CIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVD 80
Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPGS 221
T + + ++ FF
Sbjct: 81 ITEVPDFNTMYELYDPVSVMFFYRNK 106
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 36.9 bits (85), Expect = 0.007
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
I ++EFFA C HC +EP E A V L
Sbjct: 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVL 60
Score = 30.4 bits (68), Expect = 0.93
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
++ ++E++A C HC + + A V +
Sbjct: 23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVL 60
Score = 28.8 bits (64), Expect = 2.9
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 426 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
++ ++E++A C HC + + A
Sbjct: 23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAP 55
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Length = 133
Score = 35.2 bits (81), Expect = 0.012
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
+ E+ + Y S I L FA K L + A G + G +DA
Sbjct: 8 IGEIGPETYSD--YMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAF 65
Query: 200 QRIAGEFNIRG--YPTIKFFSP 219
AG N++ +P
Sbjct: 66 GAHAGNLNLKTDKFPAFAIQEV 87
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 35.9 bits (82), Expect = 0.014
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
I +VE F C HC EP + +L V
Sbjct: 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHF 60
Score = 29.8 bits (66), Expect = 1.2
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
+ ++ +VE + C HC +F+ + + L V
Sbjct: 23 QPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHF 60
Score = 27.8 bits (61), Expect = 6.4
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 426 KSDEVWIVEYYAPWCGHCQSFKDEYMKL 453
+ ++ +VE + C HC +F+ +
Sbjct: 23 QPGKIEVVELFWYGCPHCYAFEPTIVPW 50
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 35.2 bits (80), Expect = 0.020
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
S I ++EFF +C HC + +P K L L
Sbjct: 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYL 57
Score = 29.0 bits (64), Expect = 2.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
+S ++ ++E++ +C HC F +KL AL +
Sbjct: 20 QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYL 57
Score = 27.9 bits (61), Expect = 6.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 426 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+S ++ ++E++ +C HC F +KL AL
Sbjct: 20 QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALP 52
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 35.1 bits (80), Expect = 0.024
Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 16/147 (10%)
Query: 76 EEKSLSSSHGVTGFPTV----KIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSG 131
+++ ++ + G P + K + + D +K G +
Sbjct: 38 QQEKAAADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQ 97
Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP---HWEKAASELEGK 188
G +E + ++EFF+ +C HC E + +L
Sbjct: 98 YEDGKQYTTLEKPVA---------GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG 148
Query: 189 VKLGAVDATVHQRIAGEFNIRGYPTIK 215
VK+ G+ + +
Sbjct: 149 VKMTKYHVNFMGGDLGKDLTQAWAVAM 175
Score = 28.2 bits (62), Expect = 5.1
Identities = 7/33 (21%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 64
+ ++E+++ +C HC F +E + ++ +K
Sbjct: 111 VAGAPQVLEFFSFFCPHCYQF-EEVLHISDNVK 142
Score = 28.2 bits (62), Expect = 5.1
Identities = 7/33 (21%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 426 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
+ ++E+++ +C HC F +E + ++ +K
Sbjct: 111 VAGAPQVLEFFSFFCPHCYQF-EEVLHISDNVK 142
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 34.6 bits (78), Expect = 0.038
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVK 190
+ N + E FA CGHC+N+E + E +
Sbjct: 18 LENDGMAPVTEVFALSCGHCRNMENFLPVISQEAGTDIG 56
Score = 31.1 bits (69), Expect = 0.48
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 27 DDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
+ + E +A CGHC++ ++ ++ +
Sbjct: 15 STSLENDGMAPVTEVFALSCGHCRNMENFLPVISQEAGTDIG 56
Score = 30.4 bits (67), Expect = 0.95
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 421 DDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVY 460
+ + E +A CGHC++ ++ ++
Sbjct: 15 STSLENDGMAPVTEVFALSCGHCRNMENFLPVISQEAGTD 54
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 33.5 bits (77), Expect = 0.050
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 26/80 (32%)
Query: 160 LVEFFAPWCGHCKNLEPH--------------------------WEKAASELEGKVKLGA 193
++ F+ CGHC+ P W K + L
Sbjct: 35 ILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNV 94
Query: 194 VDATVHQRIAGEFNIRGYPT 213
D+ H ++I P
Sbjct: 95 RDSKNHTDFKITYDIYATPV 114
Score = 28.8 bits (65), Expect = 2.2
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 13/63 (20%)
Query: 20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQ----SFKDEYMKLATALKGVVKVGAVNAD 75
+ K I+ ++ CGHCQ D ++K KG+ N +
Sbjct: 23 YRYLYDVQAKYT------ILFFWDSQCGHCQQETPKLYDWWLKNRA--KGIQVYA-ANIE 73
Query: 76 EEK 78
+
Sbjct: 74 RKD 76
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 33.7 bits (76), Expect = 0.072
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWE 179
+ + ++EFF+ +C HC E
Sbjct: 20 AGEPQVLEFFSFYCPHCYQFEEVLH 44
Score = 28.3 bits (62), Expect = 3.6
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 427 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVY 460
+ E ++E+++ +C HC F++ K
Sbjct: 20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKL 53
Score = 27.9 bits (61), Expect = 5.2
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 64
+ E ++E+++ +C HC F++ K
Sbjct: 20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKK 51
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 33.1 bits (74), Expect = 0.11
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWE 179
D +VEFF+ +C C
Sbjct: 13 VDAPAVVEFFSFYCPPCYAFSQTMG 37
Score = 28.4 bits (62), Expect = 3.6
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 427 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVY 460
D +VE+++ +C C +F V
Sbjct: 13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVL 46
Score = 28.0 bits (61), Expect = 5.3
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 33 SDEVWIVEYYAPWCGHCQSFKDEYMKL 59
D +VE+++ +C C +F
Sbjct: 13 VDAPAVVEFFSFYCPPCYAFSQTMGVD 39
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 32.3 bits (74), Expect = 0.12
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKA 181
L+ P C C + + +
Sbjct: 35 LLFINNPGCHACAEMIEGLKAS 56
Score = 29.6 bits (67), Expect = 0.88
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 38 IVEYYAPWCGHCQ----SFKDEYMKLATALKGVVKVGAVNADEEK 78
++ P C C K + +KV ++ DEE
Sbjct: 35 LLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEEL 79
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 32.3 bits (74), Expect = 0.13
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 22/77 (28%)
Query: 159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV----DATVHQ-------------- 200
++ F+APWC C+ P + A+ +G + +
Sbjct: 28 AVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA 87
Query: 201 ----RIAGEFNIRGYPT 213
+ F + P
Sbjct: 88 DTDGSVWANFGVTQQPA 104
Score = 30.3 bits (69), Expect = 0.59
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 23/111 (20%)
Query: 36 VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN---------------------- 73
++ ++APWC CQ ++A + V VG
Sbjct: 27 PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQL 86
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK 124
AD + S+ ++ GVT P N +G + D + + A+ +
Sbjct: 87 ADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTR-RVTALTSR 136
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Length = 175
Score = 32.3 bits (74), Expect = 0.16
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 144 TDSNFEKLVYNSDDIW---------LVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
+++N + L + + +VEFF C +C+ + + V+L
Sbjct: 1 SNANRDSLFNDPNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDA-DPNVRL 56
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 31.9 bits (73), Expect = 0.17
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 21/75 (28%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLG--------AVDATVHQ----------- 200
++ F+ PWC C P + A+ +G A+ + V +
Sbjct: 28 VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDA 87
Query: 201 --RIAGEFNIRGYPT 213
I +N+ P
Sbjct: 88 DGVIWARYNVPWQPA 102
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 31.9 bits (73), Expect = 0.21
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGY 211
L+ F++ C CK P + + + ++ + AV + I+
Sbjct: 33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKET 84
Score = 26.9 bits (60), Expect = 7.8
Identities = 6/75 (8%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 19 IKLTTSNFDDKVIKSDE----VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
+ + + +V + ++ +++ C C+ + + + + V AV+
Sbjct: 10 LTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHM 69
Query: 75 DEEKSLSSSHGVTGF 89
+ +
Sbjct: 70 PRSEDDLDPGKIKET 84
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone,
endoplasmic reticulum, isomeras membrane, redox-active
center; 2.20A {Homo sapiens}
Length = 147
Score = 31.6 bits (71), Expect = 0.22
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 291 RNNYLEILQKLGDKYKQKVW-GWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM--KY 347
+ L + + +K K+ +I S+ + + PA+ ++ ++ KY
Sbjct: 47 YDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKY 106
Query: 348 SLLKGPFSYDGINEFLRDLSYGR 370
+ + I EF G+
Sbjct: 107 KPESEELTAERITEFCHRFLEGK 129
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 31.8 bits (71), Expect = 0.27
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASE 184
+ D L++ F+ C C + SE
Sbjct: 16 NADKTLIKVFSYACPFCYKYDKAVTGPVSE 45
Score = 29.1 bits (64), Expect = 2.5
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 28 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMK 58
+K I + + +++ ++ C C +
Sbjct: 11 EKPIPNADKTLIKVFSYACPFCYKYDKAVTG 41
Score = 29.1 bits (64), Expect = 2.5
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 422 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMK 452
+K I + + +++ ++ C C +
Sbjct: 11 EKPIPNADKTLIKVFSYACPFCYKYDKAVTG 41
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 31.2 bits (71), Expect = 0.28
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKA 181
++ F+ P C +C+ E + +
Sbjct: 31 MLFFYDPDCSNCRKFEKLFAEI 52
Score = 28.5 bits (64), Expect = 2.7
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK----GVVKVGAVNAD 75
S + ++ +Y P C +C+ F+ + ++ ++ G ++V A+ D
Sbjct: 19 NSRMSRLKAQYT------MLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPD 72
Query: 76 EEK 78
E +
Sbjct: 73 ENR 75
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 31.5 bits (72), Expect = 0.33
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 407 DVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
LE L + V+ + ++ +A WC C+
Sbjct: 30 KFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCR 67
Score = 28.0 bits (63), Expect = 3.9
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASE 184
L+ +A WC C+ + + +++
Sbjct: 49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 79
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown
function, STRU genomics, PSI, MCSG, protein structure
initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Length = 208
Score = 31.9 bits (72), Expect = 0.34
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKV 125
L+ S GV +P++ + + + + + + E I + +
Sbjct: 154 VFQDQLS--LAKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERIIENM 206
Score = 27.3 bits (60), Expect = 9.8
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
L P C C +P EK +L G ++
Sbjct: 5 LYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQF 36
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 31.2 bits (71), Expect = 0.34
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK 188
L+ F+A + + ++
Sbjct: 36 LLNFWAAYDAESRARNVQLANEVNKFGPD 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.35
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 444 QSFKDEYMKLATALKVY 460
Q+ K KL +LK+Y
Sbjct: 20 QALK----KLQASLKLY 32
Score = 30.3 bits (67), Expect = 0.67
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 9/29 (31%)
Query: 179 EKAA-SELEGKVKLGAVD--------ATV 198
EK A +L+ +KL A D AT+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
Score = 30.3 bits (67), Expect = 0.79
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 21/42 (50%)
Query: 306 KQKVWGWIWSEAVAQPDLENVLEIGGFGY-----PAMAVLNA 342
KQ + L+ L++ Y PA+A+ A
Sbjct: 19 KQAL-----------KKLQASLKL----YADDSAPALAI-KA 44
Score = 27.6 bits (60), Expect = 5.6
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 50 QSFKDEYMKLATALK----GVVKVGAVNADEE 77
Q+ K KL +LK A+ A E
Sbjct: 20 QALK----KLQASLKLYADDSAPALAIKATME 47
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 31.1 bits (71), Expect = 0.36
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 23/77 (29%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK------VKLGAVDATVHQ------------- 200
++F+A WCG C+ P + ++ + K V L A +
Sbjct: 32 YLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAF 91
Query: 201 ----RIAGEFNIRGYPT 213
+ + ++G PT
Sbjct: 92 DPKGQTPRLYGVKGMPT 108
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 31.0 bits (70), Expect = 0.39
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 160 LVEFFAPWCGHCKNLEPH-W--EKAASELEGKVKLGAVDATVH--QRIAGEFNIRGYPTI 214
++ C+ L W E + + V QR + + +P +
Sbjct: 46 MINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV 105
Query: 215 KFFSP 219
P
Sbjct: 106 SILDP 110
Score = 27.6 bits (61), Expect = 6.3
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 32 KSDEVWI-VEYYAPWCGHCQS-----FKDEYMKLATALKGVVKVGAVNADEEKSLSSSHG 85
+ W+ + CQ + +E +K + +++E + +
Sbjct: 39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYK 98
Query: 86 VTGFPTVKIF 95
+ FP V I
Sbjct: 99 LGDFPYVSIL 108
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 31.5 bits (71), Expect = 0.45
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK 124
A + + G++GFP + + S G R +A+ L+ Q+
Sbjct: 161 RTLAGFQ--RVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQ-LLDTWLQQ 211
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 30.8 bits (69), Expect = 0.49
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 160 LVEFFAPWCGHCKNLEP 176
+V C + + L+
Sbjct: 48 MVIHHLEDCQYSQALKK 64
Score = 30.4 bits (68), Expect = 0.68
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG-AVNADEEKSLSSSHGVTGFPTVKIFS 96
+V ++ C + Q+ K + + + +N E + + + +F
Sbjct: 48 MVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFV 107
Query: 97 DKR 99
D
Sbjct: 108 DPS 110
Score = 29.3 bits (65), Expect = 1.4
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 432 IVEYYAPWCGHCQSFKDEYMK 452
+V ++ C + Q+ K + +
Sbjct: 48 MVIHHLEDCQYSQALKKVFAQ 68
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 30.5 bits (69), Expect = 0.55
Identities = 10/86 (11%), Positives = 18/86 (20%), Gaps = 26/86 (30%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV------------------------- 194
F A WC + P K +
Sbjct: 32 FFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF 91
Query: 195 -DATVHQRIAGEFNIRGYPTIKFFSP 219
D + + F+++ PT+
Sbjct: 92 EDRKGMEFLTTGFDVKSIPTLVGVEA 117
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 30.6 bits (69), Expect = 0.64
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLG 192
++ F A WC C + ++ + +
Sbjct: 41 ILWFMAAWCPSCVYMADLLDRLTEKYREISVIA 73
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 30.4 bits (69), Expect = 0.65
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK 188
LV+F+ C C+ P+ K + + K
Sbjct: 33 LVDFWFAGCSWCRKETPYLLKTYNAFKDK 61
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 30.4 bits (68), Expect = 0.69
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 150 KLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASE 184
K V + + + F P C CK LE +EK
Sbjct: 8 KEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKMTDV 42
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 30.4 bits (69), Expect = 0.71
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 20/76 (26%)
Query: 158 IWLVEFFAPWCGHCKNLEPHWEKAASELEGK----------------VKLGAVDATVH-- 199
I LV F+A WC +C++ P ++ + V
Sbjct: 43 IVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSD 102
Query: 200 --QRIAGEFNIRGYPT 213
++ + P
Sbjct: 103 ATGQVQQRYGANRLPD 118
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell
adhes glycoprotein, toxin-cell adhesion complex; HET:
NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A
1dzi_A
Length = 200
Score = 30.5 bits (69), Expect = 0.72
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 99 RNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTD 145
+ Y G T A++ R+ SGGR+ ++K +V +TD
Sbjct: 74 SQTSQYGGDLTN---TFGAIQYARKYAYSAASGGRRSATKVMVVVTD 117
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide
binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB:
4dmu_B 2adf_A 1fe8_A 1ao3_A
Length = 189
Score = 30.3 bits (69), Expect = 0.93
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 100 NPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTD 145
+ +G + I AL + + G R G+SKAVV L
Sbjct: 75 DVMQREGGPSQ---IGDALGFAVRYLTSEMHGARPGASKAVVILVT 117
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 31.1 bits (69), Expect = 0.99
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 82 SSHGVTGFPTVKIFSDKRNP------TPYQGARTADAIIDVALEAIRQKVKGGKSGGRKG 135
S+ T F + F NP T A A++ + ++ G R+
Sbjct: 175 SNKFQTHFT-FEEFRRSSNPLSLLASVHQLQGFTYTA---TAIQNVVHRLFHASYGARRD 230
Query: 136 SSKAVVELTD------SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK 180
++K ++ +TD S K V D + +A G W++
Sbjct: 231 AAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKE 281
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 29.7 bits (67), Expect = 1.1
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 29/83 (34%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQ------------------ 200
L++F+A WC C + EK A + + L V +
Sbjct: 42 LIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP 101
Query: 201 ----------RIAGEFNIRGYPT 213
IA NI YP+
Sbjct: 102 KLPVVTDNGGTIAQNLNISVYPS 124
>1yg0_A COP associated protein; open-faced beta-sandwich, missing
C-terminal beta-sheet, Met transport; NMR {Helicobacter
pylori}
Length = 66
Score = 28.0 bits (63), Expect = 1.1
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 168 CGHCKNLEPHWEKAASELEG----KVKLGAVDATV 198
C HC + EK E+EG V + V
Sbjct: 12 CNHCVD---KIEKFVGEIEGVSFIDVSVEKKSVVV 43
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 29.3 bits (66), Expect = 1.2
Identities = 11/86 (12%), Positives = 20/86 (23%), Gaps = 26/86 (30%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV------------------------- 194
F A WC + P + + V
Sbjct: 32 FFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPF 91
Query: 195 -DATVHQRIAGEFNIRGYPTIKFFSP 219
+ Q+++ FN+ PT+
Sbjct: 92 AQSEAVQKLSKHFNVESIPTLIGVDA 117
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
{Toxoplasma gondii}
Length = 178
Score = 29.6 bits (67), Expect = 1.3
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 100 NPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTD 145
PY+ T L+A +Q + G GR+ K V+ +TD
Sbjct: 89 LDMPYKKGSTN---TSDGLKACKQILFTGSRPGREHVPKLVIGMTD 131
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 29.6 bits (66), Expect = 1.4
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
L + E+L L+ WC C+ + A L+ ++L + +
Sbjct: 39 NGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQ-RLQPNIELAIISKGRAE 97
Query: 201 RIAGEFNIRGYPTI 214
+ I
Sbjct: 98 DDLRQRLALERIAI 111
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 29.2 bits (66), Expect = 1.5
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK 188
++ +A WCG C+ P ++ + GK
Sbjct: 34 YIDVWATWCGPCRGELPALKELEEKYAGK 62
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 28.5 bits (64), Expect = 1.7
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 13/65 (20%)
Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGV----VKVGAVNADEEK----SLSSSHGVTGF 89
++ Y C C+ K + + GV V V + EE+ + + F
Sbjct: 24 VIMYGLSTCVWCKKTK-KLLT----DLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSF 78
Query: 90 PTVKI 94
PT I
Sbjct: 79 PTTII 83
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 29.0 bits (65), Expect = 1.8
Identities = 8/86 (9%), Positives = 22/86 (25%), Gaps = 26/86 (30%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV------------------------- 194
F A WC C+ P + + +
Sbjct: 52 FFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPF 111
Query: 195 -DATVHQRIAGEFNIRGYPTIKFFSP 219
+ + + + ++++ PT+ +
Sbjct: 112 ANRNIVEALTKKYSVESIPTLIGLNA 137
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET:
CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Length = 165
Score = 29.0 bits (64), Expect = 1.9
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 232 GGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCR 291
GGR + +T+ + ++ + +++Q V+EA + E PL V D
Sbjct: 6 GGRWEKTDLTYRILRFPWQLVREQVRQTVAEA-LQVWSEVTPLTFTEVHEGRADIMIDFA 64
Query: 292 NNY 294
+
Sbjct: 65 RYW 67
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 28.8 bits (65), Expect = 2.0
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 23/77 (29%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK------VKLGAVDATVHQ------------- 200
+ F+ WC CK P+ + + V +G VH
Sbjct: 30 FLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVL 89
Query: 201 ----RIAGEFNIRGYPT 213
++ +++ PT
Sbjct: 90 DTDRQVLDAYDVSPLPT 106
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 28.9 bits (65), Expect = 2.0
Identities = 2/29 (6%), Positives = 8/29 (27%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK 188
L++F + ++ +
Sbjct: 39 LIDFTVYNNAMSAAHNLALRELYNKYASQ 67
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 29.6 bits (66), Expect = 2.0
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK 188
L++F+A C +C+ PH +
Sbjct: 86 LIDFWAYSCINCQRAIPHVVGWYQAYKDS 114
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 28.8 bits (65), Expect = 2.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK 188
L+ F+ P C C + P K A++ + K
Sbjct: 32 LINFWFPSCPGCVSEMPKIIKTANDYKNK 60
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 28.9 bits (65), Expect = 2.2
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 381 LPQINQVDAW---DGKDGEL-PQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYY 436
LP I+QV D + P E +++ +++P ++ F + Y
Sbjct: 107 LPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAFR-----VIHDPLKRYM 161
Query: 437 A 437
Sbjct: 162 E 162
>1jb7_B Telomere-binding protein beta subunit; DNA-protein interactions,
DNA HYDR sodium ION, quadruplex DNA, DNA-binding
protein-DNA complex; 1.86A {Sterkiella nova} SCOP:
b.40.4.3 PDB: 1otc_B* 1ph6_B 1ph1_B 1ph3_B 1ph2_B 1pa6_B
1ph4_B 1ph5_B* 1ph7_B 1ph8_B 1ph9_B 1phj_B*
Length = 260
Score = 29.4 bits (65), Expect = 2.4
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 65 GVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK 124
G+VK A DE S G T T+KI + + DA+ A K
Sbjct: 188 GIVKASASKGDEFSDFSFKEGNTA--TLKI------ADIFVQEKGKDALNKAADHTDGAK 239
Query: 125 VKGGKSGGRKGSSKA 139
VKGG G K ++KA
Sbjct: 240 VKGGAKGKGKAAAKA 254
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 28.4 bits (64), Expect = 2.4
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
L+ F+A WC ++ E +
Sbjct: 37 LLNFWASWCDPQPEANAELKRLNKEYKKNKNF 68
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 29.9 bits (66), Expect = 2.5
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 17/132 (12%)
Query: 238 DIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEI 297
V + +TE +P + V + ++ L I + S + + +I
Sbjct: 832 PTVKASCGFFTELLPRCGEVESVGKVVQEDGR---MLLIAVLEAIGGQASRSLMDCFADI 888
Query: 298 LQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKY--SLLKGPFS 355
L L + W ++ L+ GF P+ + +K + +L+ +
Sbjct: 889 LFALNKHCFSLLSMW----------IKEALQPPGF--PSARLSPEQKDTFSQQILRERVN 936
Query: 356 YDGINEFLRDLS 367
+ E +++ +
Sbjct: 937 KRRVKEMVKEFT 948
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 28.8 bits (65), Expect = 2.5
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK 188
+++F A WCG C+ P EK
Sbjct: 37 MLQFTASWCGVCRKEMPFIEKDIWLKHKD 65
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 28.5 bits (63), Expect = 2.9
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 160 LVEFFAPWCGHCKNLEPH-WEKA--ASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF 216
+++F C +C+ +E W +S + L + + I T +
Sbjct: 51 MLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERT 110
Query: 217 FSPGSRSASDAQEYNGGRTSQ 237
S Q G +Q
Sbjct: 111 LRTVGDKWSYLQRVKFGANAQ 131
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A
1bhq_1 1bho_1 1idn_1 3qa3_G
Length = 194
Score = 28.5 bits (64), Expect = 3.3
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 95 FSDKRNPT------PYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTD 145
F + NP RT + + +++ +G RK + K +V +TD
Sbjct: 62 FQNNPNPRSLVKPITQLLGRTH---TATGIRKVVRELFNITNGARKNAFKILVVITD 115
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 29.0 bits (66), Expect = 3.7
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 109 TADAIIDVALEAIRQKVKGGK-----SGG 132
T II+ ++ I++KV + SGG
Sbjct: 212 TTKHIIEDSIRDIQEKVGKEQVIVGLSGG 240
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 28.4 bits (64), Expect = 3.8
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 407 DVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
DL + + +K + +V + WC C+
Sbjct: 38 AFDLPSVQDPARRLTEADLK-GKPALVNVWGTWCPSCR 74
Score = 27.6 bits (62), Expect = 5.9
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASE 184
LV + WC C+ P + A +
Sbjct: 58 GKPALVNVWGTWCPSCRVEHPELTRLAEQ 86
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP:
c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Length = 213
Score = 28.6 bits (64), Expect = 4.1
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 99 RNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTD 145
+ G +T + + R++ G R+G K +V +TD
Sbjct: 75 KKIVQRGGRQTM---TALGTDTARKEAFTEARGARRGVKKVMVIVTD 118
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex,
immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Length = 223
Score = 28.6 bits (64), Expect = 4.1
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 99 RNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTD 145
G +T + ++ R++ G R+G K +V +TD
Sbjct: 90 NKIVQRGGRQTM---TALGIDTARKEAFTEARGARRGVKKVMVIVTD 133
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 29.0 bits (66), Expect = 4.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 109 TADAIIDVALEAIRQKVKGGK-----SGG 132
T IID A+ IR++V K SGG
Sbjct: 209 TPAKIIDDAVARIREQVGDDKVILGLSGG 237
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 29.0 bits (66), Expect = 4.2
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 109 TADAIIDVALEAIRQKVKGGK-----SGG 132
T + +++ L +R++ + SGG
Sbjct: 191 TPEHVLEELLREVRERAGKDRVLLAVSGG 219
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 27.8 bits (62), Expect = 4.5
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVK 190
F A WC C+ P SEL
Sbjct: 30 GFYFSAHWCPPCRGFTPILADMYSELVDDSA 60
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase;
HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB:
1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A*
1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A*
1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ...
Length = 253
Score = 28.3 bits (63), Expect = 4.5
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 49 CQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKIF--SDKRN-- 100
+ F + + K G V + E + +++ +G + I SD
Sbjct: 159 AELFYTPDPSMFDVMD---KYGIVGVEMEAAGIYGVAAEYGA---KALAICTVSDHIKTG 212
Query: 101 --PTPYQGARTADAIIDVALEAIRQKVKGGKSGGRK 134
T + T + +I++AL+++ + G GG
Sbjct: 213 EQTTSEERQNTFNEMIEIALDSVLIGDQAGYEGGSH 248
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 27.8 bits (61), Expect = 4.7
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 232 GGRTSQDIVTWALNKYTENVPPPEIKQIVSEA 263
G + +T+ +N YT ++ ++ + +A
Sbjct: 2 GPVWRKHYITYRINNYTPDMNREDVDYAIRKA 33
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 27.7 bits (62), Expect = 4.7
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD 195
++ F+A WC CK P + A E + + +
Sbjct: 33 AVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISRE 69
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 27.7 bits (62), Expect = 4.9
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 26/80 (32%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQ------------------ 200
++ F+ WC CK P ++ VKL V+ +
Sbjct: 38 ILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFP 97
Query: 201 -------RIAGEFNIRGYPT 213
+ E++I PT
Sbjct: 98 IVLDSKGELMKEYHIITIPT 117
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 28.6 bits (64), Expect = 5.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 231 NGGRT-SQDIVTWALNKYTENVPP-------PEIKQIVSEAT 264
NG RT + +VT LN ++ V P EI++ V
Sbjct: 315 NGERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCN 356
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 28.8 bits (65), Expect = 5.1
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 109 TADAIIDVALEAIRQKVKGGK-----SGG 132
T + I+++V K SGG
Sbjct: 222 TVQNRELECIREIKERVGTSKVLVLLSGG 250
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 27.7 bits (62), Expect = 5.4
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 24/78 (30%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDAT--------------------- 197
+V F+A WC C+ P + + + GK ++ V
Sbjct: 32 IVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVL 91
Query: 198 --VHQRIAGEFNIRGYPT 213
+R+ + G P
Sbjct: 92 LDADKRVGKLYGTTGVPE 109
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 27.8 bits (62), Expect = 5.6
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 160 LVEFFAPWCGHCKNLE-PHWEKAASELEGK 188
++E F C C P +K +
Sbjct: 32 VIEAFQMLCPGCVMHGIPLAQKVRAAFPED 61
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 28.4 bits (64), Expect = 5.7
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 179 EKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY-NGGRTSQ 237
E AA+ + + A + +R+ + I GYP + S A +A +Y + G T+Q
Sbjct: 49 EDAAAGITAAARTFAPEM---ERLRDDTEIVGYPILPLVEQLSAHAGEAGKYLHWGATTQ 105
Query: 238 DIV 240
DI+
Sbjct: 106 DIM 108
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 27.4 bits (61), Expect = 5.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK 188
+V +A WCG C+ P K +
Sbjct: 28 IVNLWATWCGPCRKEMPAMSKWYKAQKKG 56
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 27.7 bits (62), Expect = 5.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGK 188
+V FFA WC C++ P + +
Sbjct: 38 IVNFFATWCPPCRSEIPDMVQVQKTWASR 66
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo
sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I
3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A
1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B*
2ica_A* 2o7n_A* 3m6f_A* ...
Length = 179
Score = 27.7 bits (62), Expect = 6.6
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 103 PYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTD 145
+ T A+ + +V + G R ++K ++ +TD
Sbjct: 73 KHMLLLTN---TFGAINYVATEVFREELGARPDATKVLIIITD 112
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP:
c.47.1.13
Length = 175
Score = 27.4 bits (61), Expect = 6.7
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKL 191
++EF C +C+ E+ ++ GKV+
Sbjct: 31 MIEFINVRCPYCRKWFEESEELLAQSVKSGKVER 64
Score = 27.4 bits (61), Expect = 7.5
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 17 DVIKLTTSNFDDKVIKSDE---VWIVEYYAPWCGHCQSFKDEYMKL 59
VI T N + + + V ++E+ C +C+ + +E +L
Sbjct: 7 SVIDATKVNTETGLHIGESNAPVKMIEFINVRCPYCRKWFEESEEL 52
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 28.0 bits (62), Expect = 7.4
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 296 EILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMA 338
IL+ L DKY K GW W + L++G F Y +
Sbjct: 17 NILKDL-DKYTPKRRGWTWRQPAEN------LQMGPFIYKDAS 52
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 27.4 bits (61), Expect = 7.9
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 158 IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
+ ++ + WC C++ + EL+ TV
Sbjct: 61 VVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTV 101
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 26.9 bits (60), Expect = 9.4
Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 28/87 (32%)
Query: 160 LVEFFAPWCGHCKNLEPH---------------------------WEKAASELEGKVKLG 192
+ F A WC C+ P + ++
Sbjct: 32 FLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPF 91
Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSP 219
+TV + + F + PT+ +
Sbjct: 92 DQRSTVSE-LGKTFGVESIPTLITINA 117
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 27.6 bits (60), Expect = 9.6
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 232 GGRTSQDIVTWALNKYTENVPPPEIKQIVSEA 263
G + +T+ +N YT ++ ++ + +A
Sbjct: 1 GPVWRKHYITYRINNYTPDMNREDVDYAIRKA 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.419
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,424,098
Number of extensions: 460472
Number of successful extensions: 1903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1595
Number of HSP's successfully gapped: 466
Length of query: 461
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,993,456
Effective search space: 1453617984
Effective search space used: 1453617984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)