BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17503
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATG-NKY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQ KIREE+PDRIMNT+SVVPSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
VEPYNATLSVHQL+ T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 61/64 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 335 bits (858), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAG-NKY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQ KIREE+PDRIMNT+SVVPSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
VEPYNATLSVHQL+ T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 61/64 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 335 bits (858), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAG-NKY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQ KIREE+PDRIMNT+SVVPSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
VEPYNATLSVHQL+ T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 61/64 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 335 bits (858), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAG-NKY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQ KIREE+PDRIMNT+SVVPSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
VEPYNATLSVHQL+ T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 61/64 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 334 bits (856), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATG-NKY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQ KIREE+PDRIMNT+SV+PSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
VEPYNATLSVHQL+ T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 61/64 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 334 bits (856), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATG-NKY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQ KIREE+PDRIMNT+SV+PSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
VEPYNATLSVHQL+ T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/64 (90%), Positives = 61/64 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MS+TFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 334 bits (856), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATG-NKY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQ KIREE+PDRIMNT+SV+PSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
VEPYNATLSVHQL+ T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 61/64 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 334 bits (856), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 158/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATG-NKY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQ KIREE+PDRIMNT+SV+PSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
VEPYNATLSVHQL+ T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 61/64 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 334 bits (856), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 158/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATG-NKY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQ KIREE+PDRIMNT+SV+PSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
VEPYNATLSVHQL+ T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 61/64 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 267 bits (683), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 129/214 (60%), Positives = 153/214 (71%), Gaps = 4/214 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREI+H+ GQCGNQIGA FWE I EHG+D G YHG D Q ER+NVY+NEA +
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGK-W 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPR+I VDLEPGT+DA R+ G +FRPDN++FGQS AGN WAKGHYTEGAELVDSV+DV
Sbjct: 60 VPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
+R+EAE CD LQGFQ KIREEFPDR+M T+SV+PSPK SDT
Sbjct: 120 IRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTR 179
Query: 181 VEPYNATLSVHQLM---SATFIGNSTCIQDLFKR 211
VEPYNATLSVHQL+ TF ++ + D+ +R
Sbjct: 180 VEPYNATLSVHQLVEHSDETFCIDNEALYDICQR 213
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 59/64 (92%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
M+ATFI NST IQ+LFKR+ DQF+AMF+RKAFLHWYT EGMDE+EF+EAESNM DLVSEY
Sbjct: 363 MAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEY 422
Query: 254 QQYQ 257
QQYQ
Sbjct: 423 QQYQ 426
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 7/220 (3%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYH---GDKDNQLERINVYYNEAQGR 57
MRE++ + GQ G QIG WE+ S EHGI P G E + +++E G
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHET-GY 59
Query: 58 NVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 117
+VPRAI VDLEP +D R+GPY +F P+ + G+ A NN+A+GHYT G E++ V
Sbjct: 60 GKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDV 119
Query: 118 LDVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVS 177
LD +RK A+ CD LQGF ++ E+ + ++V P+P+VS
Sbjct: 120 LDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVS 179
Query: 178 DTVVEPYNATLSVHQLM---SATFIGNSTCIQDLFKRISD 214
+VVEPYN L+ H + TF+ ++ I D+ KR D
Sbjct: 180 TSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLD 219
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
+ + N+T I + +KRI +F+ M+ ++AF+HWY GEGM+E EFTEA ++ L +Y
Sbjct: 375 AVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLMS---ATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLM---SATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLM---SATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLM---SATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D VRK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLM---SATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T + + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLM---SATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLMS---ATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLMS---ATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLM---SATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLMS---ATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLMS---ATFIGNSTCIQDLFKR 211
VVEPYN+ L+ H + F+ ++ I D+ +R
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 255 Q 255
+
Sbjct: 434 E 434
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 140 bits (353), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 2/195 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAY-HGDKDNQLERINVYYNEAQGRNV 59
+REI+ + GQCGNQI FW + EHG+ G G + V++++ +
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGK- 59
Query: 60 YVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 119
YVPRA+LVDLEPG + G Q+F + V GA NNWA+G+ EG +++D +++
Sbjct: 60 YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMN 119
Query: 120 VVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDT 179
V+ E LQGF ++R+ +P + + T+SVVPSP +SD+
Sbjct: 120 VIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDS 179
Query: 180 VVEPYNATLSVHQLM 194
VEPYNA L++ +++
Sbjct: 180 AVEPYNAILTLQRIL 194
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 201 NSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
N T I +F+R+ QF+ MF A+ HWY G+ +A + + L Y+
Sbjct: 370 NHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSYR 423
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 120/207 (57%), Gaps = 10/207 (4%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYV 61
REI+ +Q GQCGNQIG +FW+ + AEHGI P +R +V++ +A + Y+
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEH-YI 61
Query: 62 PRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLD 119
PRA+L+DLEP + + + PY +++ P+N + GAGNNWA G +++G ++ + + D
Sbjct: 62 PRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFD 120
Query: 120 VVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSP-KVSD 178
++ +EA+ D L+GF ++ + +P +++ TYSV P+ ++SD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 179 TVVEPYNATLSVHQLMSATFIGNSTCI 205
VV+PYN+ L++ +L N+ C+
Sbjct: 181 VVVQPYNSLLTLKRLTQ-----NADCL 202
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 189 SVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESN--- 245
S H++ S + N T I LF+R Q++ + +R+AFL + E M + F E +++
Sbjct: 369 SAHRV-SGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREI 427
Query: 246 MIDLVSEYQ 254
+ L+ EY
Sbjct: 428 VQQLIDEYH 436
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 120/207 (57%), Gaps = 10/207 (4%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYV 61
REI+ +Q GQCGNQIG +FW+ + AEHGI P +R +V++ +A + Y+
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEH-YI 61
Query: 62 PRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLD 119
PRA+L+DLEP + + + PY +++ P+N + GAGNNWA G +++G ++ + + D
Sbjct: 62 PRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFD 120
Query: 120 VVRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSP-KVSD 178
++ +EA+ D L+GF ++ + +P +++ TYSV P+ ++SD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 179 TVVEPYNATLSVHQLMSATFIGNSTCI 205
VV+PYN+ L++ +L N+ C+
Sbjct: 181 VVVQPYNSLLTLKRLTQ-----NADCL 202
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 189 SVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESN--- 245
S H++ S + N T I LF+R Q++ + +R+AFL + E M + F E +++
Sbjct: 369 SAHRV-SGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREI 427
Query: 246 MIDLVSEYQ 254
+ L+ EY
Sbjct: 428 VQQLIDEYH 436
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 10/214 (4%)
Query: 5 VHVQAGQCGNQIGAKFWEIISAEHGIDP----TGAYHGDKDNQLERINVYYNEAQGRNVY 60
+ V GQ GNQI A FW+ + EHGIDP T + N + + G Y
Sbjct: 7 IVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS--Y 64
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAI+VDLEP +D ++ G +F P N + GAG N+A G+ G E++ V+
Sbjct: 65 VPRAIMVDLEPSVIDNVKA-TSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSR 123
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
+ E + CD + G ++E++ + + + +V+PSP+VS V
Sbjct: 124 LDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVV 183
Query: 181 VEPYNATLSVHQL---MSATFIGNSTCIQDLFKR 211
EPYN +++ L A I ++ + DL R
Sbjct: 184 TEPYNTVFALNTLRRSADACLIFDNEALFDLAHR 217
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
S + N+T I + RI F+ +++RKAF +WY EGM E + ++ +LV YQ
Sbjct: 369 SMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQ 428
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,514,253
Number of Sequences: 62578
Number of extensions: 301798
Number of successful extensions: 690
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 52
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)