Query psy17503
Match_columns 277
No_of_seqs 191 out of 1342
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:13:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 8E-99 2E-103 670.7 18.2 270 1-272 1-443 (443)
2 PLN00221 tubulin alpha chain; 100.0 1.1E-80 2.4E-85 589.8 19.1 269 1-270 1-449 (450)
3 PTZ00335 tubulin alpha chain; 100.0 2.9E-79 6.3E-84 579.8 19.4 260 1-261 1-440 (448)
4 PLN00220 tubulin beta chain; P 100.0 9.7E-79 2.1E-83 577.6 20.5 262 1-263 1-432 (447)
5 PTZ00010 tubulin beta chain; P 100.0 2E-77 4.4E-82 567.5 18.9 274 1-275 1-444 (445)
6 KOG1374|consensus 100.0 8.4E-77 1.8E-81 530.2 17.7 258 1-260 2-443 (448)
7 cd02186 alpha_tubulin The tubu 100.0 1.3E-74 2.9E-79 547.1 17.7 254 2-256 1-434 (434)
8 PLN00222 tubulin gamma chain; 100.0 6.2E-74 1.3E-78 543.8 19.2 259 1-261 2-446 (454)
9 cd02187 beta_tubulin The tubul 100.0 1.9E-73 4E-78 538.4 19.2 254 2-256 1-424 (425)
10 cd02188 gamma_tubulin Gamma-tu 100.0 1E-73 2.2E-78 539.5 16.2 250 2-253 1-431 (431)
11 PTZ00387 epsilon tubulin; Prov 100.0 1.8E-72 3.9E-77 534.2 19.3 251 1-260 1-453 (465)
12 cd02189 delta_tubulin The tubu 100.0 1.2E-69 2.6E-74 514.9 17.2 245 4-254 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 3.5E-68 7.6E-73 495.5 16.1 223 2-256 1-379 (379)
14 KOG1376|consensus 100.0 1.2E-65 2.7E-70 457.0 11.4 248 1-250 1-406 (407)
15 cd06059 Tubulin The tubulin su 100.0 7.2E-60 1.6E-64 441.4 15.6 213 3-255 1-382 (382)
16 KOG1375|consensus 100.0 6.6E-48 1.4E-52 344.7 11.8 202 40-262 4-356 (369)
17 PF00091 Tubulin: Tubulin/FtsZ 100.0 2.2E-46 4.8E-51 325.1 4.7 201 3-210 1-204 (216)
18 cd06060 misato Human Misato sh 100.0 4.5E-40 9.7E-45 313.3 15.4 185 2-193 1-216 (493)
19 cd00286 Tubulin_FtsZ Tubulin/F 100.0 3.1E-38 6.7E-43 290.1 11.2 150 3-193 1-150 (328)
20 KOG2530|consensus 100.0 4.2E-30 9.1E-35 234.9 8.9 188 1-193 1-272 (483)
21 smart00864 Tubulin Tubulin/Fts 99.9 5.5E-27 1.2E-31 200.0 5.6 149 49-209 3-160 (192)
22 cd02202 FtsZ_type2 FtsZ is a G 99.8 8.5E-21 1.8E-25 175.4 9.8 160 1-203 1-171 (349)
23 PF14881 Tubulin_3: Tubulin do 99.6 1.4E-16 2.9E-21 134.2 5.6 110 83-193 17-141 (180)
24 cd02191 FtsZ FtsZ is a GTPase 99.6 2.9E-15 6.2E-20 136.2 10.3 150 4-202 3-156 (303)
25 PF10644 Misat_Tub_SegII: Misa 99.5 6.8E-15 1.5E-19 115.3 4.3 70 2-78 1-73 (115)
26 cd02201 FtsZ_type1 FtsZ is a G 99.4 6.5E-13 1.4E-17 121.0 9.5 141 4-193 3-143 (304)
27 TIGR00065 ftsZ cell division p 99.4 1.1E-12 2.3E-17 121.3 10.0 150 4-202 20-173 (349)
28 PRK09330 cell division protein 99.2 1.3E-10 2.8E-15 108.4 9.2 142 3-193 15-156 (384)
29 PRK13018 cell division protein 99.1 7.3E-10 1.6E-14 103.3 10.7 150 4-202 31-184 (378)
30 PF13809 Tubulin_2: Tubulin li 96.8 0.012 2.6E-07 54.7 10.6 60 134-193 150-217 (345)
31 COG0206 FtsZ Cell division GTP 96.8 0.0073 1.6E-07 55.7 9.0 89 107-202 75-167 (338)
32 PF03953 Tubulin_C: Tubulin C- 82.9 0.44 9.6E-06 37.5 0.4 21 194-214 106-126 (126)
33 PF12953 DUF3842: Domain of un 74.8 2.8 6E-05 33.3 2.6 26 142-167 6-32 (131)
34 PTZ00010 tubulin beta chain; P 72.0 2.4 5.1E-05 40.9 1.9 66 4-70 135-205 (445)
35 PRK14484 phosphotransferase ma 55.2 10 0.00022 29.9 2.4 29 114-144 41-69 (124)
36 PF03610 EIIA-man: PTS system 43.3 49 0.0011 25.2 4.5 31 114-144 40-70 (116)
37 cd00006 PTS_IIA_man PTS_IIA, P 42.8 63 0.0014 24.9 5.1 30 115-144 41-70 (122)
38 TIGR00824 EIIA-man PTS system, 42.2 72 0.0016 24.5 5.3 31 114-144 41-71 (116)
39 cd02186 alpha_tubulin The tubu 33.9 41 0.00089 32.3 3.3 28 4-31 136-163 (434)
40 cd00741 Lipase Lipase. Lipase 31.5 42 0.00092 26.6 2.6 51 105-159 2-52 (153)
41 PF13508 Acetyltransf_7: Acety 28.1 60 0.0013 22.4 2.6 22 145-166 40-61 (79)
42 TIGR01732 tiny_TM_bacill conse 25.9 46 0.00099 18.7 1.2 13 141-153 1-13 (26)
43 PF02456 Adeno_IVa2: Adenoviru 25.6 1.3E+02 0.0029 27.9 4.8 28 145-172 212-243 (369)
44 PLN02847 triacylglycerol lipas 25.5 47 0.001 33.3 2.1 61 105-169 225-287 (633)
45 PF02044 Bombesin: Bombesin-li 25.4 16 0.00035 17.3 -0.5 10 99-108 1-10 (14)
46 PLN00221 tubulin alpha chain; 25.0 62 0.0013 31.3 2.8 28 4-31 137-164 (450)
47 cd06408 PB1_NoxR The PB1 domai 25.0 90 0.002 23.0 3.0 49 197-248 16-69 (86)
48 cd00519 Lipase_3 Lipase (class 24.2 59 0.0013 27.8 2.3 53 104-160 101-153 (229)
49 PTZ00335 tubulin alpha chain; 24.1 67 0.0015 31.0 2.9 27 4-30 137-163 (448)
50 COG1528 Ftn Ferritin-like prot 23.0 19 0.00041 29.9 -1.0 35 218-258 112-146 (167)
51 PF12910 RelB_N: Antitoxin of 23.0 66 0.0014 20.5 1.8 21 234-254 1-21 (46)
52 PF12532 DUF3732: Protein of u 22.7 2.6E+02 0.0056 23.7 5.9 38 8-68 70-107 (193)
53 COG1086 Predicted nucleoside-d 22.0 52 0.0011 32.7 1.7 24 142-166 257-280 (588)
54 COG0572 Udk Uridine kinase [Nu 21.9 1.1E+02 0.0023 26.7 3.3 27 136-163 9-35 (218)
55 COG2518 Pcm Protein-L-isoaspar 20.5 56 0.0012 28.2 1.3 18 141-158 78-95 (209)
56 COG4053 Uncharacterized protei 20.3 1.1E+02 0.0025 26.0 3.1 55 115-172 69-123 (244)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=8e-99 Score=670.72 Aligned_cols=270 Identities=55% Similarity=1.054 Sum_probs=261.0
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccC
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSG 80 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~ 80 (277)
||||||||+||||||||++||+++|.||||.++|.+++.++.++++.++||+|+.. +|||||||+|||||++|+.++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~-~k~vPRaI~vDLEP~vid~v~~g 79 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASD-GKFVPRAILVDLEPGVIDQVRNG 79 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCC-CccccceEEEecCcchHhhhccC
Confidence 99999999999999999999999999999999999988888888999999999998 99999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhc
Q psy17503 81 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEF 160 (277)
Q Consensus 81 ~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey 160 (277)
++++||+|+|++++++|||||||+|||++|+++.+.++|+|||++|.||.||||+++||++|||||||||+||++|++||
T Consensus 80 ~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~ey 159 (443)
T COG5023 80 PYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEY 159 (443)
T ss_pred ccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEeeCCCCCCCceeeecccchhhhhh-----------------------------------------------
Q psy17503 161 PDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL----------------------------------------------- 193 (277)
Q Consensus 161 ~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l----------------------------------------------- 193 (277)
|||.+.+|+|+|+|+.++++|||||++|++|.|
T Consensus 160 pkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTts 239 (443)
T COG5023 160 PKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTS 239 (443)
T ss_pred chhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhe
Confidence 999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 240 lRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG 319 (443)
T COG5023 240 LRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRG 319 (443)
T ss_pred eecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhc
Confidence
Q ss_pred ----------------------------------------------cccccccchHHHHHHHhhhhhhhhhhcccccccc
Q psy17503 194 ----------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLH 227 (277)
Q Consensus 194 ----------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~aflh 227 (277)
+++++|+|+|+|.++|+++.+||++||+||||||
T Consensus 320 ~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlh 399 (443)
T COG5023 320 DVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLH 399 (443)
T ss_pred CCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHH
Confidence 6789999999999999999999999999999999
Q ss_pred cccCCCCCccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q psy17503 228 WYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATVEEDGEFEEDEE 272 (277)
Q Consensus 228 ~y~~egm~~~~f~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~~ 272 (277)
||++|||+++||+|||+++++|++||+++++++.+++++ +||||
T Consensus 400 wY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~-~~~~~ 443 (443)
T COG5023 400 WYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE-DEEEM 443 (443)
T ss_pred HHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh-hhccC
Confidence 999999999999999999999999999999998775444 55543
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.1e-80 Score=589.75 Aligned_cols=269 Identities=42% Similarity=0.822 Sum_probs=250.3
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCc--ccccccccccccccCCCccccceeeecCCCCcccccc
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATR 78 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~ 78 (277)
||||||||+||||||||.+||+++|.||+++++|....... ...+.+++||+|+.+ ++|+|||||||+||++|++++
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~-~~~~pRav~iD~e~~~i~~i~ 79 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGA-GKHVPRAVFVDLEPTVIDEVR 79 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCC-cccccchhcCCCChhhhhhhc
Confidence 99999999999999999999999999999999987644332 234567899999988 999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHh
Q psy17503 79 SGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE 158 (277)
Q Consensus 79 ~~~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~d 158 (277)
+++++++|+|++++++++|+|||||+|||+.|+++.+.++|+||+++|+||+||||+++||++||||||+||+++++|+|
T Consensus 80 ~~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d 159 (450)
T PLN00221 80 TGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV 159 (450)
T ss_pred cCccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccceEEeeCCCCCCCceeeecccchhhhhh---------------------------------------------
Q psy17503 159 EFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL--------------------------------------------- 193 (277)
Q Consensus 159 ey~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l--------------------------------------------- 193 (277)
+||++.+.+++|+|++..++++++|||++|++++|
T Consensus 160 ~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T 239 (450)
T PLN00221 160 DYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLT 239 (450)
T ss_pred hcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhccccc
Confidence 99999999999999987788999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 240 ~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~ 319 (450)
T PLN00221 240 ASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMY 319 (450)
T ss_pred ccccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------cccccccchHHHHHHHhhhhhhhhhhc
Q psy17503 194 -----------------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMF 220 (277)
Q Consensus 194 -----------------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~ 220 (277)
.++++++|+|+|...|+++.++|++||
T Consensus 320 RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf 399 (450)
T PLN00221 320 RGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMY 399 (450)
T ss_pred cCCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 136788999999999999999999999
Q ss_pred ccccccccccCCCCCccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q psy17503 221 RRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATVEEDGEFEED 270 (277)
Q Consensus 221 ~~~aflh~y~~egm~~~~f~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~ 270 (277)
+||||||||+++|||++||.||+++|++|+++|+++.+...+++.|++||
T Consensus 400 ~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~ 449 (450)
T PLN00221 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEE 449 (450)
T ss_pred hhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99999999999999999999999999999999999988776665555443
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=2.9e-79 Score=579.77 Aligned_cols=260 Identities=42% Similarity=0.842 Sum_probs=244.4
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCc--ccccccccccccccCCCccccceeeecCCCCcccccc
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATR 78 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~ 78 (277)
|||||+||+||||||||.+||+++++||+++++|.++..+. ...+..++||+|+.+ ++|+||||+||+||++|++++
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~-~~~~pRav~iD~e~~~i~~i~ 79 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGA-GKHVPRCVFLDLEPTVIDEVR 79 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCC-CccccccccccCCcchhhhcc
Confidence 99999999999999999999999999999999987654332 234567899999988 899999999999999999999
Q ss_pred cCCCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHh
Q psy17503 79 SGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE 158 (277)
Q Consensus 79 ~~~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~d 158 (277)
.++++++|+|++++++++|+|||||+|||+.|+++.+.++|+||+++|+||+||||+++||++||||||+||+|+++|+|
T Consensus 80 ~~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d 159 (448)
T PTZ00335 80 TGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSV 159 (448)
T ss_pred cCccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccceEEeeCCCCCCCceeeecccchhhhhh---------------------------------------------
Q psy17503 159 EFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL--------------------------------------------- 193 (277)
Q Consensus 159 ey~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l--------------------------------------------- 193 (277)
+||++++.+++|+|++..++++++|||++|++++|
T Consensus 160 ~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t 239 (448)
T PTZ00335 160 DYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLT 239 (448)
T ss_pred hccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhcccc
Confidence 99999999999999887789999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 240 ~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~ 319 (448)
T PTZ00335 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMY 319 (448)
T ss_pred cccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------cccccccchHHHHHHHhhhhhhhhhhc
Q psy17503 194 -----------------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMF 220 (277)
Q Consensus 194 -----------------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~ 220 (277)
.++++++|+|+|.+.|+++.++|++||
T Consensus 320 RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf 399 (448)
T PTZ00335 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMY 399 (448)
T ss_pred cCCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 136788999999999999999999999
Q ss_pred ccccccccccCCCCCccchhHHHHHHHHHHHHHHHHhhhcc
Q psy17503 221 RRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATV 261 (277)
Q Consensus 221 ~~~aflh~y~~egm~~~~f~ea~~~l~~l~~~Y~~~~~~~~ 261 (277)
+||||||||+++|||++||+||+++|++|+++|+++.++..
T Consensus 400 ~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~ 440 (448)
T PTZ00335 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA 440 (448)
T ss_pred hhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999975443
No 4
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=9.7e-79 Score=577.59 Aligned_cols=262 Identities=85% Similarity=1.390 Sum_probs=247.5
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccC
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSG 80 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~ 80 (277)
|||||+||+||||||||.+||+++++||+++++|.++...+.+.+.+++||+++.+ ++|+||||+||+||++|++++.+
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~-~~~~pRav~iD~e~~~i~~i~~~ 79 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASG-GRYVPRAVLMDLEPGTMDSVRSG 79 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCC-CcccceeEecCCcHHHHHHHhcC
Confidence 99999999999999999999999999999999887765544444567899999888 89999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhc
Q psy17503 81 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEF 160 (277)
Q Consensus 81 ~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey 160 (277)
+++.+|+|++++++++|+|||||+|||+.|+++.+.++|+||+++|+||+||||+++||++||||||+|++++++|+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y 159 (447)
T PLN00220 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (447)
T ss_pred ccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEeeCCCCCCCceeeecccchhhhhh-----------------------------------------------
Q psy17503 161 PDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL----------------------------------------------- 193 (277)
Q Consensus 161 ~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l----------------------------------------------- 193 (277)
|++.+.+++|+|++..++++++|||++|++++|
T Consensus 160 ~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~s 239 (447)
T PLN00220 160 PDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCC 239 (447)
T ss_pred cccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchh
Confidence 999999999999987789999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 240 lRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG 319 (447)
T PLN00220 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG 319 (447)
T ss_pred hccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcC
Confidence
Q ss_pred -------------------------------------------cccccccchHHHHHHHhhhhhhhhhhccccccccccc
Q psy17503 194 -------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYT 230 (277)
Q Consensus 194 -------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~aflh~y~ 230 (277)
.++++|+|+|+|...|+++.++|++||+||||||||+
T Consensus 320 ~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~ 399 (447)
T PLN00220 320 KMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399 (447)
T ss_pred CCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 4678899999999999999999999999999999999
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHhhhcccc
Q psy17503 231 GEGMDEMEFTEAESNMIDLVSEYQQYQEATVEE 263 (277)
Q Consensus 231 ~egm~~~~f~ea~~~l~~l~~~Y~~~~~~~~~~ 263 (277)
++|||+++|.||+++|++|+++|+++.+...+.
T Consensus 400 ~~Gmee~ef~ea~~~l~~li~~Y~~~~~~~~~~ 432 (447)
T PLN00220 400 GEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 432 (447)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999998765333
No 5
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=2e-77 Score=567.53 Aligned_cols=274 Identities=85% Similarity=1.381 Sum_probs=255.6
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccC
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSG 80 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~ 80 (277)
|||||+||+||||||||.+||++++.||+++++|.++...+.+.+.+++||+|+.. ++|+||||+||+||++|+.++.+
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~-~~~~pRav~iD~e~~vi~~i~~~ 79 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATG-GRYVPRAVLMDLEPGTMDSVRAG 79 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCC-CceEEeeeeccCChhhhhhhccc
Confidence 99999999999999999999999999999999887655433333567899999988 99999999999999999999998
Q ss_pred CCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhc
Q psy17503 81 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEF 160 (277)
Q Consensus 81 ~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey 160 (277)
+++.+|+|++++++++|+|||||+|||+.|+++.+.++|+||+++|+||++|||+++||++||||||+|++++++|+|+|
T Consensus 80 ~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey 159 (445)
T PTZ00010 80 PYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEY 159 (445)
T ss_pred chhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEeeCCCCCCCceeeecccchhhhhh-----------------------------------------------
Q psy17503 161 PDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL----------------------------------------------- 193 (277)
Q Consensus 161 ~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l----------------------------------------------- 193 (277)
||+.+.+++|+|++..++++++|||++|++++|
T Consensus 160 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~ 239 (445)
T PTZ00010 160 PDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCC 239 (445)
T ss_pred CccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccc
Confidence 999999999999987789999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 240 ~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG 319 (445)
T PTZ00010 240 LRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRG 319 (445)
T ss_pred eecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcC
Confidence
Q ss_pred -------------------------------------------cccccccchHHHHHHHhhhhhhhhhhccccccccccc
Q psy17503 194 -------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYT 230 (277)
Q Consensus 194 -------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~aflh~y~ 230 (277)
+++++++|+|+|...|+++.++|++||+||||||||+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~ 399 (445)
T PTZ00010 320 RMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYT 399 (445)
T ss_pred CCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhh
Confidence 4578899999999999999999999999999999999
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcc
Q psy17503 231 GEGMDEMEFTEAESNMIDLVSEYQQYQEATVEEDGEFEEDEEPLE 275 (277)
Q Consensus 231 ~egm~~~~f~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~ 275 (277)
++|||++||.||+++|++|+++|+++.....+.+.+.|||++.-|
T Consensus 400 ~eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~~~~ 444 (445)
T PTZ00010 400 GEGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYE 444 (445)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhccC
Confidence 999999999999999999999999998887666666777766543
No 6
>KOG1374|consensus
Probab=100.00 E-value=8.4e-77 Score=530.21 Aligned_cols=258 Identities=40% Similarity=0.797 Sum_probs=244.0
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccC
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSG 80 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~ 80 (277)
||||||+|+||||||||.+||+++|+||+|.++|......+.+.++-++||++..+ +.|+||||||||||+||+.+.++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd-~~yipRAvLvDlEPrVIn~~~~~ 80 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADD-NHYIPRAVLVDLEPRVINQILSS 80 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccC-CccccceeeeccchHHHhccccc
Confidence 68999999999999999999999999999999999877777777888999999988 99999999999999999999999
Q ss_pred CCCCCCCCCCcccc--cCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHh
Q psy17503 81 PYGQIFRPDNFVFG--QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE 158 (277)
Q Consensus 81 ~~~~lf~~~~~i~~--~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~d 158 (277)
+++++|+|+|+... ..|+|||||.|| ..|+++.++|+|.|+|++|.||+|.||+++||++||||||+||.|+|+|+|
T Consensus 81 ~~s~l~n~eni~~s~~ggGAGNNWA~GY-~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~d 159 (448)
T KOG1374|consen 81 PYSGLYNPENIFLSDHGGGAGNNWASGY-SQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLND 159 (448)
T ss_pred hhhcccCccceEEecCCCCccccccccc-ccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHH
Confidence 99999999998764 468999999996 459999999999999999999999999999999999999999999999999
Q ss_pred hccccccceEEeeCCC-CCCCceeeecccchhhhhh--------------------------------------------
Q psy17503 159 EFPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQL-------------------------------------------- 193 (277)
Q Consensus 159 ey~~~~~~~~~v~p~~-~~~~~~v~~yN~~ls~~~l-------------------------------------------- 193 (277)
+||||.+.+++|||+. ..+|++|||||++|++++|
T Consensus 160 rypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~s 239 (448)
T KOG1374|consen 160 RYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAS 239 (448)
T ss_pred hchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999975 3689999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 240 t~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~ 319 (448)
T KOG1374|consen 240 TTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYI 319 (448)
T ss_pred cccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchH
Confidence
Q ss_pred ------------------------------------------------------cccccccchHHHHHHHhhhhhhhhhh
Q psy17503 194 ------------------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAM 219 (277)
Q Consensus 194 ------------------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m 219 (277)
.++++++|+|+|..+|++++.|||||
T Consensus 320 si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydkl 399 (448)
T KOG1374|consen 320 SILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKL 399 (448)
T ss_pred hHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999
Q ss_pred cccccccccccCCCCCcc---chhHHHHHHHHHHHHHHHHhhhc
Q psy17503 220 FRRKAFLHWYTGEGMDEM---EFTEAESNMIDLVSEYQQYQEAT 260 (277)
Q Consensus 220 ~~~~aflh~y~~egm~~~---~f~ea~~~l~~l~~~Y~~~~~~~ 260 (277)
++||||||.|+++||+++ ||+|+++.+++|++||..+++..
T Consensus 400 rk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~~ 443 (448)
T KOG1374|consen 400 RKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQPD 443 (448)
T ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999998 99999999999999999886644
No 7
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.3e-74 Score=547.10 Aligned_cols=254 Identities=43% Similarity=0.850 Sum_probs=239.7
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCc--ccccccccccccccCCCccccceeeecCCCCccccccc
Q psy17503 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRS 79 (277)
Q Consensus 2 ~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~ 79 (277)
||||+||+||||||||.+||+++++||+++++|...+..+ ...+.+++||+|+.+ ++|+||||+||+||++|++++.
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~-~~~~pRav~iD~e~~~i~~i~~ 79 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGS-GKHVPRAVFIDLEPTVIDEVRT 79 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCC-CcCcccccccCCcHHHHHhhcc
Confidence 7999999999999999999999999999999987654433 234578999999988 9999999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhh
Q psy17503 80 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 159 (277)
Q Consensus 80 ~~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~de 159 (277)
++++.+|+|++++.+++|+|||||+|||..|+++.+.++|+||+++|+||++|||+++||++||||||+||+++++|+|+
T Consensus 80 ~~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~ 159 (434)
T cd02186 80 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVD 159 (434)
T ss_pred CccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEEeeCCCCCCCceeeecccchhhhhh----------------------------------------------
Q psy17503 160 FPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL---------------------------------------------- 193 (277)
Q Consensus 160 y~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l---------------------------------------------- 193 (277)
||++++.+++|+|++..++++++|||++|++++|
T Consensus 160 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~ 239 (434)
T cd02186 160 YGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (434)
T ss_pred cCccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccc
Confidence 9999999999999877678999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 240 ~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~R 319 (434)
T cd02186 240 SLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 319 (434)
T ss_pred ceecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHc
Confidence
Q ss_pred ----------------------------------------------------cccccccchHHHHHHHhhhhhhhhhhcc
Q psy17503 194 ----------------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFR 221 (277)
Q Consensus 194 ----------------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~ 221 (277)
+++++++|+|+|.+.|+++.++|++||+
T Consensus 320 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~ 399 (434)
T cd02186 320 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYS 399 (434)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHh
Confidence 1367899999999999999999999999
Q ss_pred cccccccccCCCCCccchhHHHHHHHHHHHHHHHH
Q psy17503 222 RKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQY 256 (277)
Q Consensus 222 ~~aflh~y~~egm~~~~f~ea~~~l~~l~~~Y~~~ 256 (277)
||||||||+++|||++||.||+++|++|+++|+++
T Consensus 400 rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 400 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred hcchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999863
No 8
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=6.2e-74 Score=543.75 Aligned_cols=259 Identities=36% Similarity=0.718 Sum_probs=240.5
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccC
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSG 80 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~ 80 (277)
|||||+||+||||||||.+||+++++||+++++|.+....+.+.+..++||+|+.. ++|+|||||||+||++|++++++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~-~~~~pRav~iD~e~~vi~~i~~~ 80 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADD-EHYIPRALLIDLEPRVINGIQNS 80 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCC-CcccceeeecCCCcchhhhhccC
Confidence 69999999999999999999999999999999987755444445678999999888 89999999999999999999999
Q ss_pred CCCCCCCCCCcccccC--CCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHh
Q psy17503 81 PYGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE 158 (277)
Q Consensus 81 ~~~~lf~~~~~i~~~~--~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~d 158 (277)
+++++|+|++++++++ |+|||||+||+ .|+++.+.++|+||+++|.||++|||+++||++||||||+|++|+++|+|
T Consensus 81 ~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d 159 (454)
T PLN00222 81 EYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALND 159 (454)
T ss_pred ccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHh
Confidence 9999999999999996 69999999955 79999999999999999999999999999999999999999999999999
Q ss_pred hccccccceEEeeCCCC-CCCceeeecccchhhhhh--------------------------------------------
Q psy17503 159 EFPDRIMNTYSVVPSPK-VSDTVVEPYNATLSVHQL-------------------------------------------- 193 (277)
Q Consensus 159 ey~~~~~~~~~v~p~~~-~~~~~v~~yN~~ls~~~l-------------------------------------------- 193 (277)
+||++.+.+++|+|++. .++++++|||++|++++|
T Consensus 160 ~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~ 239 (454)
T PLN00222 160 RYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAS 239 (454)
T ss_pred hcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCc
Confidence 99999999999999863 578899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 240 T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~ 319 (454)
T PLN00222 240 TTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKY 319 (454)
T ss_pred ccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccch
Confidence
Q ss_pred -------------------------------------------------------cccccccchHHHHHHHhhhhhhhhh
Q psy17503 194 -------------------------------------------------------MSATFIGNSTCIQDLFKRISDQFNA 218 (277)
Q Consensus 194 -------------------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~ 218 (277)
.++++|+|+|+|.+.|+++.++|++
T Consensus 320 la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~ 399 (454)
T PLN00222 320 ISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDK 399 (454)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 2467899999999999999999999
Q ss_pred hcccccccccccCCCCC----ccchhHHHHHHHHHHHHHHHHhhhcc
Q psy17503 219 MFRRKAFLHWYTGEGMD----EMEFTEAESNMIDLVSEYQQYQEATV 261 (277)
Q Consensus 219 m~~~~aflh~y~~egm~----~~~f~ea~~~l~~l~~~Y~~~~~~~~ 261 (277)
||+||||||||+++||+ ++||.||+++|++|+++|++++....
T Consensus 400 mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y 446 (454)
T PLN00222 400 LRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDY 446 (454)
T ss_pred HHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999993 79999999999999999999875554
No 9
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1.9e-73 Score=538.35 Aligned_cols=254 Identities=89% Similarity=1.417 Sum_probs=240.2
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCC
Q psy17503 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGP 81 (277)
Q Consensus 2 ~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~ 81 (277)
||||+||+||||||||.+||+++++||+++++|.+++..+...+.+++||+|+.+ ++|+||||+||+||++|++++.++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~-~~~~pRav~iD~e~~~i~~i~~~~ 79 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASG-GKYVPRAILVDLEPGTMDSVRSGP 79 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCC-CceeeeeeeccCChhhhhhhhcCc
Confidence 7999999999999999999999999999998887654433333567899999888 999999999999999999999988
Q ss_pred CCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhcc
Q psy17503 82 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFP 161 (277)
Q Consensus 82 ~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~ 161 (277)
++.+|+|++++.+++|+|||||+|||..|+++.+.++|+||+++|+||++|||+++||++||||||+|++++++|+|+||
T Consensus 80 ~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~ 159 (425)
T cd02187 80 FGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP 159 (425)
T ss_pred ccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEeeCCCCCCCceeeecccchhhhhh------------------------------------------------
Q psy17503 162 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL------------------------------------------------ 193 (277)
Q Consensus 162 ~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l------------------------------------------------ 193 (277)
++.+.+++|+|++..++++++|||++||+++|
T Consensus 160 ~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~ 239 (425)
T cd02187 160 DRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCL 239 (425)
T ss_pred CcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceee
Confidence 99999999999887678999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 240 Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~ 319 (425)
T cd02187 240 RFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGR 319 (425)
T ss_pred ecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCC
Confidence
Q ss_pred ------------------------------------------cccccccchHHHHHHHhhhhhhhhhhcccccccccccC
Q psy17503 194 ------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTG 231 (277)
Q Consensus 194 ------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~aflh~y~~ 231 (277)
.++++++|+|+|...|+++.++|++||+||||||||++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~ 399 (425)
T cd02187 320 VSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 399 (425)
T ss_pred CCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhc
Confidence 45778999999999999999999999999999999999
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHH
Q psy17503 232 EGMDEMEFTEAESNMIDLVSEYQQY 256 (277)
Q Consensus 232 egm~~~~f~ea~~~l~~l~~~Y~~~ 256 (277)
+|||++||.||+++|++|+++|+++
T Consensus 400 ~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 400 EGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999986
No 10
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1e-73 Score=539.54 Aligned_cols=250 Identities=42% Similarity=0.831 Sum_probs=234.9
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCC
Q psy17503 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGP 81 (277)
Q Consensus 2 ~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~ 81 (277)
||||+||+||||||||.+||++++.||+++++|..++.++...+.+++||+|+.+ ++|+||||+||+||++|+++++++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~-~~~~pRav~iD~Ep~vi~~i~~~~ 79 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADD-EHYVPRAILIDLEPRVINSIQNSE 79 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCC-CccCCcceeccCCcchhhhhhcCc
Confidence 7999999999999999999999999999999987765443345678999999988 999999999999999999999999
Q ss_pred CCCCCCCCCcccccC--CCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhh
Q psy17503 82 YGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 159 (277)
Q Consensus 82 ~~~lf~~~~~i~~~~--~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~de 159 (277)
++++|+|++++.+++ |+|||||+||+ .|+++.+.++|+||+++|+||++|||+++||++||||||+||+|+++|+|+
T Consensus 80 ~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~ 158 (431)
T cd02188 80 YRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDR 158 (431)
T ss_pred cccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhH
Confidence 999999999999987 99999999965 699999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEEeeCCCCC-CCceeeecccchhhhhh---------------------------------------------
Q psy17503 160 FPDRIMNTYSVVPSPKV-SDTVVEPYNATLSVHQL--------------------------------------------- 193 (277)
Q Consensus 160 y~~~~~~~~~v~p~~~~-~~~~v~~yN~~ls~~~l--------------------------------------------- 193 (277)
||++.+.+++|+|++.. ++++++|||++|++++|
T Consensus 159 y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t 238 (431)
T cd02188 159 YPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAST 238 (431)
T ss_pred cCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCcc
Confidence 99999999999998753 58899999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 239 ~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~ 318 (431)
T cd02188 239 TTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILN 318 (431)
T ss_pred cceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHH
Confidence
Q ss_pred --------------------------------------------------cccccccchHHHHHHHhhhhhhhhhhcccc
Q psy17503 194 --------------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRK 223 (277)
Q Consensus 194 --------------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~ 223 (277)
.++++++|+|+|.+.|+++.++|++||+||
T Consensus 319 ~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~kr 398 (431)
T cd02188 319 IIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRR 398 (431)
T ss_pred HHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhC
Confidence 345689999999999999999999999999
Q ss_pred cccccccCCCCC---ccchhHHHHHHHHHHHHH
Q psy17503 224 AFLHWYTGEGMD---EMEFTEAESNMIDLVSEY 253 (277)
Q Consensus 224 aflh~y~~egm~---~~~f~ea~~~l~~l~~~Y 253 (277)
||||||+++||| ++||.||+++|++|+++|
T Consensus 399 AflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 399 AFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred chhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 999999999999 999999999999999998
No 11
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.8e-72 Score=534.23 Aligned_cols=251 Identities=38% Similarity=0.732 Sum_probs=232.9
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhC-CCCCCCccCCCcccccccccccccccC----CC--ccccceeeecCCCCc
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHG-IDPTGAYHGDKDNQLERINVYYNEAQG----RN--VYVPRAILVDLEPGT 73 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~-~~~~g~~~~~~~~~~~~~~~~F~e~~~----~~--~~~pRavlvDle~~~ 73 (277)
|||||+||+||||||||.+||+++|.||+ ++++|.+ ++.+++||++... .+ +|+||||+||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777754 2467899985432 13 499999999999999
Q ss_pred ccccccCCCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHH
Q psy17503 74 MDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLI 153 (277)
Q Consensus 74 i~~i~~~~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~ll 153 (277)
|+++++++++++|+|++++++++|+|||||+|||..|+++.+.++|+||+++|+||+||||+++||++||||||+|+.++
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccceEEeeCCCCCCCceeeecccchhhhhh----------------------------------------
Q psy17503 154 SKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL---------------------------------------- 193 (277)
Q Consensus 154 e~l~dey~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l---------------------------------------- 193 (277)
++|+|+||++.+.+++|+|+. .++++++|||++|++++|
T Consensus 154 e~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 999999999999999999975 578899999999987643
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence
Q ss_pred ---------------------------------------------------------------------------ccccc
Q psy17503 194 ---------------------------------------------------------------------------MSATF 198 (277)
Q Consensus 194 ---------------------------------------------------------------------------~s~~~ 198 (277)
+++++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~ 392 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKEQLNMIYWNEDGFKTGLCNVSPLGQPYSLLC 392 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhccccccccCCCceEEEeeccCCCCCceeEEE
Confidence 46788
Q ss_pred ccchHHHHHHHhhhhhhhhhhcccccccccccCCCCCccchhHHHHHHHHHHHHHHHHhhhc
Q psy17503 199 IGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEAT 260 (277)
Q Consensus 199 l~NstsI~~~~~~i~~~f~~m~~~~aflh~y~~egm~~~~f~ea~~~l~~l~~~Y~~~~~~~ 260 (277)
++|+|+|.+.|++++++|++||+||||||||+ +||+++||+||+++|++|+++|++++...
T Consensus 393 lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~~ 453 (465)
T PTZ00387 393 LANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTAE 453 (465)
T ss_pred ecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999 89999999999999999999999997443
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=1.2e-69 Score=514.91 Aligned_cols=245 Identities=33% Similarity=0.661 Sum_probs=230.5
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCCCC
Q psy17503 4 IVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYG 83 (277)
Q Consensus 4 iItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~~ 83 (277)
||+||+||||||||.+||+++++||+++++|.+. ...+.+++||.+..+ ++|+||||+||+||++|+++++++.+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~-~~~~pRav~iD~ep~vi~~i~~~~~~ 76 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSD-GQPIARSVLVDMEPKVIESTLSKSSG 76 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCC-CCcCCceeecCCCchHHHHhhcCCCC
Confidence 7999999999999999999999999998877643 223567899999887 89999999999999999999987643
Q ss_pred --CCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhcc
Q psy17503 84 --QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFP 161 (277)
Q Consensus 84 --~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~ 161 (277)
.+|+|++++++++|+|||||+|||..|+++.+.++|+||+++|+||+++||+++||++||||||+|++++++|+|+||
T Consensus 77 ~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~ 156 (446)
T cd02189 77 GTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYP 156 (446)
T ss_pred cccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEeeCCCCCCCceeeecccchhhhhh------------------------------------------------
Q psy17503 162 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL------------------------------------------------ 193 (277)
Q Consensus 162 ~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l------------------------------------------------ 193 (277)
++.+.+++|+|+. .++++++|||++|++++|
T Consensus 157 ~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~ 235 (446)
T cd02189 157 ESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPS 235 (446)
T ss_pred ccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHh
Confidence 9999999999975 588999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 236 r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~ 315 (446)
T cd02189 236 LDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVR 315 (446)
T ss_pred hccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhccccccccccccccc
Confidence
Q ss_pred ---------------------------------------------------------------------cccccccchHH
Q psy17503 194 ---------------------------------------------------------------------MSATFIGNSTC 204 (277)
Q Consensus 194 ---------------------------------------------------------------------~s~~~l~Nsts 204 (277)
+++++++|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~Nst~ 395 (446)
T cd02189 316 PEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKFRDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVSNSQT 395 (446)
T ss_pred cccccccccccccCCcccceeeeeeeeeCCCchHHHHHHHhccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEeCCch
Confidence 45678999999
Q ss_pred HHHHHhhhhhhhhhhcccccccccccCCCCCccchhHHHHHHHHHHHHHH
Q psy17503 205 IQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254 (277)
Q Consensus 205 I~~~~~~i~~~f~~m~~~~aflh~y~~egm~~~~f~ea~~~l~~l~~~Y~ 254 (277)
|...|++++++|++||+||||||||+++|||++||.||+++|++|+++|+
T Consensus 396 i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 396 IIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=3.5e-68 Score=495.47 Aligned_cols=223 Identities=43% Similarity=0.809 Sum_probs=215.7
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCC
Q psy17503 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGP 81 (277)
Q Consensus 2 ~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~ 81 (277)
||||+||+||||||||.+||++++.|| |+||+|+||+||++|+++++++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh-------------------------------~~pR~v~iD~e~~~i~~i~~~~ 49 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH-------------------------------LKARAVLIDMEEGVVNEILKGP 49 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh-------------------------------cCCcceeccCChhHHHHHhcCc
Confidence 799999999999999999999999998 5799999999999999999999
Q ss_pred CCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhcc
Q psy17503 82 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFP 161 (277)
Q Consensus 82 ~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~ 161 (277)
++++|+|++++.++.|+|||||+||+..|+++.++++|+||+++|+||+||||+++||++||||||+|+.++++|+|+||
T Consensus 50 ~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~ 129 (379)
T cd02190 50 LRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFP 129 (379)
T ss_pred cccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEeeCCCCCCCceeeecccchhhhhh------------------------------------------------
Q psy17503 162 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL------------------------------------------------ 193 (277)
Q Consensus 162 ~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l------------------------------------------------ 193 (277)
++.+.+++|+|++. ++++++|||++|++++|
T Consensus 130 ~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~N~~ia~~i~~~t~~~rf~g~~n~d~~~ 208 (379)
T cd02190 130 EVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALVPFDAMNSIVANLLLNLTSSMRFEGSLNVDLNE 208 (379)
T ss_pred ccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHHHHHHHHHHHHhhhcCccceeecccccccchhh
Confidence 99999999999875 88899999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 209 i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~~~~ei~~~~~~ 288 (379)
T cd02190 209 ITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNVSVSDLRRNIER 288 (379)
T ss_pred hccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCCCHHHHHHHHHH
Confidence
Q ss_pred ----------------------------cccccccchHHHHHHHhhhhhhhhhhcccccccccccCCCCCccchhHHHHH
Q psy17503 194 ----------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESN 245 (277)
Q Consensus 194 ----------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~aflh~y~~egm~~~~f~ea~~~ 245 (277)
.++++++|+|+|.+.|+++.++|++||+||||||||++|||||+||+||+++
T Consensus 289 l~~~~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~eG~ee~ef~ea~~~ 368 (379)
T cd02190 289 LKPKLKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTEALES 368 (379)
T ss_pred HhccCcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCCCCcHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17503 246 MIDLVSEYQQY 256 (277)
Q Consensus 246 l~~l~~~Y~~~ 256 (277)
|++|+++|+++
T Consensus 369 l~~li~~Y~~l 379 (379)
T cd02190 369 ISNLIDEYDYL 379 (379)
T ss_pred HHHHHHHHHhC
Confidence 99999999864
No 14
>KOG1376|consensus
Probab=100.00 E-value=1.2e-65 Score=457.04 Aligned_cols=248 Identities=43% Similarity=0.842 Sum_probs=237.2
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcc--cccccccccccccCCCccccceeeecCCCCcccccc
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDN--QLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATR 78 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~--~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~ 78 (277)
|||||+|++||+|.|||+.+|+++|.||+|+++|.++.+.+. .++.+++||.++.. ++++||+++||+||. |++++
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~-~k~~pr~~fVDlEPt-idevr 78 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGA-GKHVPRAVFVDLEPT-IDEVR 78 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeeccccc-ccccceeEEEeccCc-cchhc
Confidence 999999999999999999999999999999999998875443 34467899999988 999999999999999 99999
Q ss_pred cCCCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHh
Q psy17503 79 SGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE 158 (277)
Q Consensus 79 ~~~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~d 158 (277)
.|+|+.+|||+++++|+++++||+|+|||+.|+|+++..+++||+.++.|..||||.++|+.+||||||++|.+++++..
T Consensus 79 tG~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~ 158 (407)
T KOG1376|consen 79 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSV 158 (407)
T ss_pred ccchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccceEEeeCCCCCCCceeeecccchhhhhh---------------------------------------------
Q psy17503 159 EFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL--------------------------------------------- 193 (277)
Q Consensus 159 ey~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l--------------------------------------------- 193 (277)
+|+||.++.++++|+|..+..+++|||++|+.+..
T Consensus 159 ~~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsit 238 (407)
T KOG1376|consen 159 DYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSIT 238 (407)
T ss_pred hhhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhcccc
Confidence 99999999999999999999999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 239 aSlrf~g~lnvdl~efqTnlVpyplyap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyrgdvvP~ 318 (407)
T KOG1376|consen 239 ASLRFDGALNVDLTEFQTNLVPYPLYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPK 318 (407)
T ss_pred cccccCCcccccHHHHHhhCCCCcccccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhccCCcCcc
Confidence
Q ss_pred -------------------------------cccccccchHHHHHHHhhhhhhhhhhcccccccccccCCCCCccchhHH
Q psy17503 194 -------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEA 242 (277)
Q Consensus 194 -------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~aflh~y~~egm~~~~f~ea 242 (277)
+++++|.|+|+|.+.|.++.++||.||.||||||||++|||++.||.||
T Consensus 319 ~v~~A~a~ikt~rt~qfvd~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwyvgegmeegef~ea 398 (407)
T KOG1376|consen 319 DVNAAIATIKTKRTIQFVDTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 398 (407)
T ss_pred cchHHHHhhhhccccccceeeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeeccCCCccccchhhh
Confidence 4688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy17503 243 ESNMIDLV 250 (277)
Q Consensus 243 ~~~l~~l~ 250 (277)
+++|..|.
T Consensus 399 ~ed~a~le 406 (407)
T KOG1376|consen 399 REDLAALE 406 (407)
T ss_pred hhhHHhhc
Confidence 99998774
No 15
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=7.2e-60 Score=441.40 Aligned_cols=213 Identities=55% Similarity=1.055 Sum_probs=205.2
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCCC
Q psy17503 3 EIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPY 82 (277)
Q Consensus 3 EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~ 82 (277)
|||+||+||||||||.+||+++ |+||+||++|+.++.++.
T Consensus 1 eii~i~vGq~G~qig~~~w~~~----------------------------------------i~iD~e~~~i~~i~~~~~ 40 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL----------------------------------------ILVDLDPRVINEILQGQL 40 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH----------------------------------------HcccCCcchhhhhhcccc
Confidence 8999999999999999999986 999999999999999888
Q ss_pred CCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhccc
Q psy17503 83 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPD 162 (277)
Q Consensus 83 ~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~ 162 (277)
+.+|+|++++.+++|+|||||+||+..|+++.+.++|+||+++|+||++|||+++||++||||||+|+.+++.|+|+||+
T Consensus 41 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~ 120 (382)
T cd06059 41 SKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPK 120 (382)
T ss_pred cccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEeeCCCCCCCceeeecccchhhhhh-------------------------------------------------
Q psy17503 163 RIMNTYSVVPSPKVSDTVVEPYNATLSVHQL------------------------------------------------- 193 (277)
Q Consensus 163 ~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l------------------------------------------------- 193 (277)
+.+++++|+|++..++++++|||++|++++|
T Consensus 121 ~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r 200 (382)
T cd06059 121 ILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLR 200 (382)
T ss_pred cceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccc
Confidence 9999999999887666899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 201 ~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 280 (382)
T cd06059 201 FPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDV 280 (382)
T ss_pred cCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCC
Confidence
Q ss_pred ----------------------------------------cccccccchHHHHHHHhhhhhhhhhhcccccccccccCCC
Q psy17503 194 ----------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEG 233 (277)
Q Consensus 194 ----------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~aflh~y~~eg 233 (277)
+++++++|+|+|...|+++.++|++||+||||||||+++|
T Consensus 281 ~~~~v~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~G 360 (382)
T cd06059 281 FQSEIQEAINKLKNKLNIQSWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEG 360 (382)
T ss_pred CHHHHHHHHHHHHHhcccccCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCcC
Confidence 3467899999999999999999999999999999999999
Q ss_pred CCccchhHHHHHHHHHHHHHHH
Q psy17503 234 MDEMEFTEAESNMIDLVSEYQQ 255 (277)
Q Consensus 234 m~~~~f~ea~~~l~~l~~~Y~~ 255 (277)
||++||.||+++|++|+++|++
T Consensus 361 ~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 361 MDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CchHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999973
No 16
>KOG1375|consensus
Probab=100.00 E-value=6.6e-48 Score=344.72 Aligned_cols=202 Identities=89% Similarity=1.369 Sum_probs=188.0
Q ss_pred CcccccccccccccccCCCccccceeeecCCCCcccccccCCCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHH
Q psy17503 40 KDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 119 (277)
Q Consensus 40 ~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d 119 (277)
.+.|..+++++|.+... ++|+||+|+|||+|++++++++++++.+|+|++ ++++ +|||+.|.++.|+
T Consensus 4 ~~~q~~~i~~~~~~~~~-~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds--- 70 (369)
T KOG1375|consen 4 SDLQLERINVYYNEAGG-GKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS--- 70 (369)
T ss_pred ccceeeeeeeeeccccc-ccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc---
Confidence 34677889999999988 899999999999999999999999999999998 4433 8999999999887
Q ss_pred HHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhccccccceEEeeCCCCCCCceeeecccchhhhhh------
Q psy17503 120 VVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL------ 193 (277)
Q Consensus 120 ~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l------ 193 (277)
.||+|||||++||++||||||+|++++..++++||.++..+++++|+++ ++.+++|||+.|++++|
T Consensus 71 -------~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~e 142 (369)
T KOG1375|consen 71 -------SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADE 142 (369)
T ss_pred -------ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCc
Confidence 8999999999999999999999999999999999999999999999987 99999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17503 194 -------------------------------------------------------------------------------- 193 (277)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (277)
T Consensus 143 t~cidNeal~dic~~~lkl~~~~g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~a~tv~eltq 222 (369)
T KOG1375|consen 143 TFCIDNEALYDICFRTLKLKTPSGVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQ 222 (369)
T ss_pred ccccccHHHHHHHhhhhcccCCCCceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccccccccccccc
Confidence
Q ss_pred ----------------------------------------------------------------cccccccchHHHHHHH
Q psy17503 194 ----------------------------------------------------------------MSATFIGNSTCIQDLF 209 (277)
Q Consensus 194 ----------------------------------------------------------------~s~~~l~NstsI~~~~ 209 (277)
++++++.|+|+|+.+|
T Consensus 223 q~fdaknmm~a~dyLt~a~~~rGsmkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~glkms~tf~~n~taiqelf 302 (369)
T KOG1375|consen 223 QMFDAKNMMTACDYLTVAAMFRGSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGLKMSSTFIGNNTAIQELF 302 (369)
T ss_pred ccccCcchhhhhhhhhhHHHhccchhhhHHHhhhccccCcchhhhhcccccceeeccCCCccccccccccccchhHHHHH
Confidence 4577899999999999
Q ss_pred hhhhhhhhhhcccccccccccCCCCCccchhHHHHHHHHHHHHHHHH-hhhccc
Q psy17503 210 KRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQY-QEATVE 262 (277)
Q Consensus 210 ~~i~~~f~~m~~~~aflh~y~~egm~~~~f~ea~~~l~~l~~~Y~~~-~~~~~~ 262 (277)
++|.++|.+||+||||||||++|||+|+||+||.+++++||++|+++ ++...+
T Consensus 303 ~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~~~ 356 (369)
T KOG1375|consen 303 RCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDATAE 356 (369)
T ss_pred HHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999 444433
No 17
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=2.2e-46 Score=325.11 Aligned_cols=201 Identities=44% Similarity=0.872 Sum_probs=179.9
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCCC
Q psy17503 3 EIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPY 82 (277)
Q Consensus 3 EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~ 82 (277)
|||+||+||||||||.+||++++.||+++++. .........++||++... ++|+||+|+||+||++++.++.++.
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~----~~~~~~~~~~~~f~~~~~-~~~~~r~i~iDtd~~~l~~i~~~~~ 75 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDS----KSQYNRENINSFFSESSS-GKYVPRAIAIDTDPKVLDEIRASPK 75 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTS----SSSTTSSTGCCTEEESTT-TBESEEEEEEESSHHHHHHHHTSEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccc----ccccccccccceeeeccc-ccccccccccccccccccccccccc
Confidence 89999999999999999999999999998872 222334567899999888 9999999999999999999998888
Q ss_pred CCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhccc
Q psy17503 83 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPD 162 (277)
Q Consensus 83 ~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~ 162 (277)
+.+|.+++++.+++|+||||++||+..|+++.+.++++||+.+|+||.+++|+++||++||||||+++.|++.++++||+
T Consensus 76 ~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~ 155 (216)
T PF00091_consen 76 RSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPK 155 (216)
T ss_dssp TTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTT
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEeeCCCCCCCceeeecccchhhhhh---cccccccchHHHHHHHh
Q psy17503 163 RIMNTYSVVPSPKVSDTVVEPYNATLSVHQL---MSATFIGNSTCIQDLFK 210 (277)
Q Consensus 163 ~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l---~s~~~l~NstsI~~~~~ 210 (277)
+++.+++|+|+. .+.++++||++++++.| .+++++-.|.++.+.+.
T Consensus 156 ~~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~ 204 (216)
T PF00091_consen 156 KPIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICK 204 (216)
T ss_dssp SEEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHH
T ss_pred cceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHh
Confidence 999999999983 37899999999999999 34455555556665554
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=4.5e-40 Score=313.26 Aligned_cols=185 Identities=24% Similarity=0.392 Sum_probs=150.3
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccC---CCccccceeeecCCCCcccccc
Q psy17503 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQG---RNVYVPRAILVDLEPGTMDATR 78 (277)
Q Consensus 2 ~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~---~~~~~pRavlvDle~~~i~~i~ 78 (277)
|||||||+||++|+||+||||.|+..+++.+++. ....+++++||++.+ ..+|+||+|++|++.+....-+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999999999997765543 123567999999764 3799999999999987532222
Q ss_pred cCC----------------CCCCCCCCCcccc-----cCCCccccCccccC---cCcchhhhhHHHHHhhhhccCCCCCe
Q psy17503 79 SGP----------------YGQIFRPDNFVFG-----QSGAGNNWAKGHYT---EGAELVDSVLDVVRKEAENCDCLQGF 134 (277)
Q Consensus 79 ~~~----------------~~~lf~~~~~i~~-----~~~~~nnwa~G~~~---~g~e~~~~~~d~iR~~~E~cD~lqgf 134 (277)
.+. .+-.|||+++..- ..+.+++|+.|+.. .+.+..+.++|+||+++|+||+||||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 111 1235899987653 23556777777543 34567789999999999999999999
Q ss_pred eEEeeCCCCcCCcchhHHHHHHHhhccccccceEEeeCCCCC----CCceeeecccchhhhhh
Q psy17503 135 QLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKV----SDTVVEPYNATLSVHQL 193 (277)
Q Consensus 135 ~~~~s~~GGtGSGlgs~lle~l~dey~~~~~~~~~v~p~~~~----~~~~v~~yN~~ls~~~l 193 (277)
|+++|++||| ||+|+.++++|+|||||+.++++++.|.+.. .+.++++||++|++++|
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L 216 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQL 216 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999996532 25689999999999988
No 19
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=3.1e-38 Score=290.10 Aligned_cols=150 Identities=54% Similarity=1.005 Sum_probs=143.3
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCCC
Q psy17503 3 EIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPY 82 (277)
Q Consensus 3 EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~ 82 (277)
|||+||+||||||||++||+++ |+||+|+++++.++..+.
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~----------------------------------------v~idtd~~~l~~~~~~~~ 40 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL----------------------------------------VLVDTEPGVIDETLSGPY 40 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh----------------------------------------heecCCHHHHHHHhCccc
Confidence 8999999999999999999874 899999999999998888
Q ss_pred CCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhccc
Q psy17503 83 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPD 162 (277)
Q Consensus 83 ~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~ 162 (277)
..+|++.+.+++++|+||||++||+..|+++.+.++|+||+++|+||++|||+++||++||||||+|+.++++++|+||+
T Consensus 41 ~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~ 120 (328)
T cd00286 41 RLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPK 120 (328)
T ss_pred ccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEeeCCCCCCCceeeecccchhhhhh
Q psy17503 163 RIMNTYSVVPSPKVSDTVVEPYNATLSVHQL 193 (277)
Q Consensus 163 ~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l 193 (277)
+++.+++++|++..+ +++++||++|++++|
T Consensus 121 ~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L 150 (328)
T cd00286 121 RLKITFSILPGPDEG-VIVRPYNSILTLHTL 150 (328)
T ss_pred cceeEEEecCCCCCc-chhhhhHHHHHHHHH
Confidence 999999999987544 689999999999999
No 20
>KOG2530|consensus
Probab=99.96 E-value=4.2e-30 Score=234.93 Aligned_cols=188 Identities=26% Similarity=0.429 Sum_probs=136.3
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccC---CCccccceeeecCCCCccccc
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQG---RNVYVPRAILVDLEPGTMDAT 77 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~---~~~~~pRavlvDle~~~i~~i 77 (277)
||||+|||+|+.+|.+|+||||+|...+++.++.+.+... ... .||+|+.+.+ ..+|+||+|++|+..... ..
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~~--~~~-ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g-~~ 76 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPGE--LCP-NDVLYRTGRTDHGQITYTPRLLLVDLKGELG-TL 76 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChhh--cCc-chhhhhccccccCceeeccceeEEecCcccc-cc
Confidence 9999999999999999999999999999998776543321 111 2899998866 368999999999997653 11
Q ss_pred cc-CC-------------------------------------------------------------------CCCCCCCC
Q psy17503 78 RS-GP-------------------------------------------------------------------YGQIFRPD 89 (277)
Q Consensus 78 ~~-~~-------------------------------------------------------------------~~~lf~~~ 89 (277)
.. +. ++..|||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~ 156 (483)
T KOG2530|consen 77 KYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPR 156 (483)
T ss_pred ccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCcc
Confidence 10 00 01123333
Q ss_pred CcccccCCCccccCccccCcCcch------hhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhcccc
Q psy17503 90 NFVFGQSGAGNNWAKGHYTEGAEL------VDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDR 163 (277)
Q Consensus 90 ~~i~~~~~~~nnwa~G~~~~g~e~------~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~~ 163 (277)
.+..-+..--|.=|.+-|+.|.++ .++++|+||+++|+||.||||+++.++.+|| ||+++.+++.|+|||+++
T Consensus 157 tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gf-gG~as~~le~l~DEys~~ 235 (483)
T KOG2530|consen 157 TLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGF-GGFASKLLEELQDEYSKK 235 (483)
T ss_pred ccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCc-hhHHHHHHHHHHHhhcCC
Confidence 322211111111112346666653 5678999999999999999999999999999 799999999999999999
Q ss_pred ccceEEeeCCCCCC-Cc---eee---ecccchhhhhh
Q psy17503 164 IMNTYSVVPSPKVS-DT---VVE---PYNATLSVHQL 193 (277)
Q Consensus 164 ~~~~~~v~p~~~~~-~~---~v~---~yN~~ls~~~l 193 (277)
.+.++...|-|... +. +-. ..|.+|++++|
T Consensus 236 ~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qL 272 (483)
T KOG2530|consen 236 AVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQL 272 (483)
T ss_pred ceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999998855322 11 212 46889999998
No 21
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.93 E-value=5.5e-27 Score=199.99 Aligned_cols=149 Identities=35% Similarity=0.596 Sum_probs=129.6
Q ss_pred cccccccCCCccccceeeecCCCCcccccccCCCCCCCCCCCcccccCCCccccCccccC-----cCcchhhhhHHHHHh
Q psy17503 49 VYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT-----EGAELVDSVLDVVRK 123 (277)
Q Consensus 49 ~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~~~lf~~~~~i~~~~~~~nnwa~G~~~-----~g~e~~~~~~d~iR~ 123 (277)
++|.+ +++.||+|++|+++++++.+..++.+.+|++.+.+..+.++||+|++||++ .|+++.+.++|+||+
T Consensus 3 ~~~g~----g~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~ 78 (192)
T smart00864 3 KVFGV----GGYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIRE 78 (192)
T ss_pred EEEEe----CCchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHH
Confidence 35555 578999999999999999998778888999999999999999999999998 788999999999999
Q ss_pred hhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhccccccceEEeeCCCCCCCceeeecccchhhhhhc----ccccc
Q psy17503 124 EAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLM----SATFI 199 (277)
Q Consensus 124 ~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l~----s~~~l 199 (277)
++|.| ++|+++||++||||||+++.+++.++ +||++. .+++++|. ..+..+++||+++++++|. .+.++
T Consensus 79 ~le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~ 151 (192)
T smart00864 79 ELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVI 151 (192)
T ss_pred HhcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEE
Confidence 99999 99999999999999999999999999 999877 88999993 4677999999999999992 34445
Q ss_pred cchHHHHHHH
Q psy17503 200 GNSTCIQDLF 209 (277)
Q Consensus 200 ~NstsI~~~~ 209 (277)
.|. ++.+.+
T Consensus 152 dN~-~l~~~~ 160 (192)
T smart00864 152 DND-ALLDIC 160 (192)
T ss_pred EhH-HHHHHH
Confidence 555 444443
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.83 E-value=8.5e-21 Score=175.41 Aligned_cols=160 Identities=24% Similarity=0.374 Sum_probs=130.3
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccC
Q psy17503 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSG 80 (277)
Q Consensus 1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~ 80 (277)
|| |..|-+|+||+.|-+++++. +.. .+ .+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~~-----------------------~~-~~~~~~~iavntD~~~L~~l~~- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DKR-----------------------SG-FGYCVGALAINTAKNDLKGLKH- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CCC-----------------------cC-CccceeEEEEECCHHHHHhhhc-
Confidence 44 78899999999999998643 100 01 3689999999999999887754
Q ss_pred CCCCCCCCCCcccccC-----CCccccCccccCcCcchhhhhHHHHHhhhhccCC--CCCeeEEeeCCCCcCCcchhHHH
Q psy17503 81 PYGQIFRPDNFVFGQS-----GAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDC--LQGFQLTHSLGGGTGSGMGTLLI 153 (277)
Q Consensus 81 ~~~~lf~~~~~i~~~~-----~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~--lqgf~~~~s~~GGtGSGlgs~ll 153 (277)
++.|+.++.+++ |+|++| ..|++..++..|.||+.+|.||. +++|+++++++||||||+++.++
T Consensus 50 ----~~~~~ki~~g~~~t~G~GaG~~~-----~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~ia 120 (349)
T cd02202 50 ----IPAEDRILIGQSEVKGHGVGADR-----ELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLA 120 (349)
T ss_pred ----CCCCCEEEecCcccCCCCCCCCh-----HHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHH
Confidence 346777777764 566665 45688999999999999999997 99999999999999999999999
Q ss_pred HHHHhhccccccceEEeeCCCCCCCceeeecccchhhhhh----cccccccchH
Q psy17503 154 SKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL----MSATFIGNST 203 (277)
Q Consensus 154 e~l~dey~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l----~s~~~l~Nst 203 (277)
+.+++.|| +++.++.++|++.. ..+++||+++++++| .+++++.|..
T Consensus 121 e~lke~~~-~~~~~iv~~P~~~e--g~~~~~NA~~~l~~L~~~~D~viv~dNd~ 171 (349)
T cd02202 121 KELKERYE-EPVYALGVLPAREE--GERYSANAARSLDALSEEADAIILFDNDA 171 (349)
T ss_pred HHHHHhCC-ccEEEEEEecCCCC--CchhhHHHHHHHHHHHHhCCEEEEEehHH
Confidence 99999999 88999999998653 489999999999999 2344555543
No 23
>PF14881 Tubulin_3: Tubulin domain
Probab=99.65 E-value=1.4e-16 Score=134.23 Aligned_cols=110 Identities=25% Similarity=0.400 Sum_probs=75.8
Q ss_pred CCCCCCCCcccccCCCcccc--CccccCcCcchhh------hhHHH-HHhhhhccCCCCCeeEEeeCCCCcCCcchhHHH
Q psy17503 83 GQIFRPDNFVFGQSGAGNNW--AKGHYTEGAELVD------SVLDV-VRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLI 153 (277)
Q Consensus 83 ~~lf~~~~~i~~~~~~~nnw--a~G~~~~g~e~~~------~~~d~-iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~ll 153 (277)
+-.|||+++..-++-..++. ...-|..|.+.++ .++|+ ||+++|+||.|||||++.++.+|| +|+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gw-gGfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGW-GGFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCch-HhHHHHHH
Confidence 34567776654332111111 1222556665543 35565 999999999999999999999999 69999999
Q ss_pred HHHHhhcccccc-ceEEeeCCCCCC-C----ceeeecccchhhhhh
Q psy17503 154 SKIREEFPDRIM-NTYSVVPSPKVS-D----TVVEPYNATLSVHQL 193 (277)
Q Consensus 154 e~l~dey~~~~~-~~~~v~p~~~~~-~----~~v~~yN~~ls~~~l 193 (277)
++|+|||||+.+ +.+.+.+..... . ......|.++++..|
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L 141 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSEL 141 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999996 555554432211 1 123457999999988
No 24
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.61 E-value=2.9e-15 Score=136.17 Aligned_cols=150 Identities=23% Similarity=0.270 Sum_probs=112.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCCCC
Q psy17503 4 IVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYG 83 (277)
Q Consensus 4 iItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~~ 83 (277)
|..|-+|+||+.+-+++++. ++ .-.+.+.+|++...++.+.. +.+
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~-----------------------------~~~~~iainTd~~~L~~~~a-~~k 47 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK-----------------------------EGRSAVAVNTDAQDLLGLEA-ENR 47 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC-----------------------------CCccEEEEECcHHHHhcCCC-CcE
Confidence 67789999999999998642 10 01356778877766655442 111
Q ss_pred CCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhcccc
Q psy17503 84 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDR 163 (277)
Q Consensus 84 ~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~~ 163 (277)
-++-++ .+.-.|+|++|+.| ++..+++.+.||+.+|.||. |+++++++||||||+++.+++.+++.|+
T Consensus 48 i~iG~~--~t~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~-- 115 (303)
T cd02191 48 VLIGQA--RTKGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT-- 115 (303)
T ss_pred EecCCc--cccCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC--
Confidence 112111 12335789998765 58889999999999999994 9999999999999999999999999986
Q ss_pred ccceEEeeCCCCCCCceeeecccchhhhhhc----ccccccch
Q psy17503 164 IMNTYSVVPSPKVSDTVVEPYNATLSVHQLM----SATFIGNS 202 (277)
Q Consensus 164 ~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l~----s~~~l~Ns 202 (277)
.+++|+|.|+..+..+++||+.+++++|. +++++.|.
T Consensus 116 --~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~ 156 (303)
T cd02191 116 --LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNE 156 (303)
T ss_pred --CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehH
Confidence 57778887777778999999999999992 34455554
No 25
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.53 E-value=6.8e-15 Score=115.27 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=54.7
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccC---CCccccceeeecCCCCcccccc
Q psy17503 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQG---RNVYVPRAILVDLEPGTMDATR 78 (277)
Q Consensus 2 ~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~---~~~~~pRavlvDle~~~i~~i~ 78 (277)
|||||||+|+.+|.||+||||+|...+..+++.. ....+++|+||++.+ ..+|+||+|++|+..+. ..+.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~l-GsL~ 73 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESYLPYDPDEK------PSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGL-GSLR 73 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcccccCcccc------CcccCCceEEecccCcCCCeeECCcEEEEecCCCc-Cccc
Confidence 7999999999999999999999988774433221 123467999999865 36899999999999763 4444
No 26
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.42 E-value=6.5e-13 Score=121.01 Aligned_cols=141 Identities=20% Similarity=0.309 Sum_probs=100.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCCCC
Q psy17503 4 IVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYG 83 (277)
Q Consensus 4 iItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~~ 83 (277)
|..|-+|+||+.+-+++++. ++. -...+.+|++...++.+.. +.+
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~~-----------------------------~~~~~a~ntD~~~L~~~~~-~~k 47 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GLE-----------------------------GVEFIAANTDAQALAKSKA-PNK 47 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CCC-----------------------------CceEEEEECCHHHHhcCCC-CcE
Confidence 67789999999999998652 100 0245667777666555432 111
Q ss_pred CCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhcccc
Q psy17503 84 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDR 163 (277)
Q Consensus 84 ~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~~ 163 (277)
-++-++ .+.-.|+|++|+.| ++..++..+.||+.+|.||.+ +++++++||||||+++.+.+ +..+|+.
T Consensus 48 ~~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~-~a~e~g~- 115 (304)
T cd02201 48 IQLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAK-IAKEMGA- 115 (304)
T ss_pred EEcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHH-HHHHcCC-
Confidence 122222 12335788998766 567788899999999999985 99999999999999888554 5556763
Q ss_pred ccceEEeeCCCCCCCceeeecccchhhhhh
Q psy17503 164 IMNTYSVVPSPKVSDTVVEPYNATLSVHQL 193 (277)
Q Consensus 164 ~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l 193 (277)
.+++++|.|+..+..+++||+.+++..|
T Consensus 116 --~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L 143 (304)
T cd02201 116 --LTVAVVTKPFSFEGKKRMRQAEEGLEEL 143 (304)
T ss_pred --CEEEEEeCCccccchhHHHHHHHHHHHH
Confidence 5566666666567789999999999999
No 27
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.40 E-value=1.1e-12 Score=121.34 Aligned_cols=150 Identities=24% Similarity=0.322 Sum_probs=104.6
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCCCC
Q psy17503 4 IVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYG 83 (277)
Q Consensus 4 iItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~~ 83 (277)
|..|-+|+||+.+-+++++. ++ .-...+.+|++...++.+... .+
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~-----------------------------~~~~~iainTD~~~L~~~~a~-~k 64 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV-----------------------------EGVEFIAINTDAQHLKTTKAD-KK 64 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-----------------------------CceEEEEEECCHHHHhcCCCC-eE
Confidence 67789999999999998653 10 013446677766555444321 11
Q ss_pred CCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhcccc
Q psy17503 84 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDR 163 (277)
Q Consensus 84 ~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~~ 163 (277)
-++.++ .+.-.|+|++|+. |++..++..+.||+.+|.||.+ +++++++||||||+++ ++.++..+|+
T Consensus 65 i~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~ap-via~~ake~~-- 131 (349)
T TIGR00065 65 ILIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAP-VVAKIAKELG-- 131 (349)
T ss_pred EEcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHH-HHHHHHHHcC--
Confidence 111111 1222478889765 5789999999999999999995 9999999999999988 5555555665
Q ss_pred ccceEEeeCCCCCCCceeeecccchhhhhh----cccccccch
Q psy17503 164 IMNTYSVVPSPKVSDTVVEPYNATLSVHQL----MSATFIGNS 202 (277)
Q Consensus 164 ~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l----~s~~~l~Ns 202 (277)
+.+++++|.|+..+..++|||+.+++..| .+++++.|.
T Consensus 132 -~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd 173 (349)
T TIGR00065 132 -ALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPND 173 (349)
T ss_pred -CCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCH
Confidence 55667777666677799999999999999 233445554
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.15 E-value=1.3e-10 Score=108.36 Aligned_cols=142 Identities=21% Similarity=0.297 Sum_probs=103.2
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCCC
Q psy17503 3 EIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPY 82 (277)
Q Consensus 3 EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~ 82 (277)
.|..|-+|+||+.+=+++++. ++. + ...+.++++...++.+... .
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~~--------------------------~---v~fia~NTD~q~L~~~~a~-~ 59 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GIQ--------------------------G---VEFIAANTDAQALLKSKAP-V 59 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CCC--------------------------C---ceEEEEeCcHHHHhcCCCC-e
Confidence 367789999999999998653 110 0 1235666665554443221 1
Q ss_pred CCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhccc
Q psy17503 83 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPD 162 (277)
Q Consensus 83 ~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~ 162 (277)
+-++-++ ++.-.|+|++|. .|++..++..+.||+.++.||.+ +|+++++||||||.++ ++.++..+|+
T Consensus 60 ki~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g- 127 (384)
T PRK09330 60 KIQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG- 127 (384)
T ss_pred EEEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC-
Confidence 1111111 122247888876 55788889999999999999887 8999999999999999 6778888886
Q ss_pred cccceEEeeCCCCCCCceeeecccchhhhhh
Q psy17503 163 RIMNTYSVVPSPKVSDTVVEPYNATLSVHQL 193 (277)
Q Consensus 163 ~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l 193 (277)
+.+++|+|.|+..+..+.+||+.+++..|
T Consensus 128 --~ltvaVvt~PF~fEG~~r~~nA~~gL~~L 156 (384)
T PRK09330 128 --ILTVAVVTKPFSFEGKKRMKQAEEGIEEL 156 (384)
T ss_pred --CcEEEEEecCccccchhHHHHHHHHHHHH
Confidence 67888888887778889999999999999
No 29
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.08 E-value=7.3e-10 Score=103.25 Aligned_cols=150 Identities=20% Similarity=0.316 Sum_probs=101.1
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccCCCC
Q psy17503 4 IVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYG 83 (277)
Q Consensus 4 iItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~~~~ 83 (277)
|..|-+|+||+.+-+++++. ++. + ...+.++++...++.+... .+
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~~--------------------------~---v~~iaiNTD~q~L~~~~a~-~k 75 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GIE--------------------------G---AETIAINTDAQHLAMIKAD-KK 75 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CCC--------------------------C---ceEEEEECCHHHHhcCCCC-cE
Confidence 67789999999999998642 110 0 2346677776555544321 11
Q ss_pred CCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhcccc
Q psy17503 84 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDR 163 (277)
Q Consensus 84 ~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~~ 163 (277)
-++-++ ++.-.|+|++|..| ++..++..+.||+.+|.||. |+++++++||||||+++.+++.+++ ++ .
T Consensus 76 i~iG~~--~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~ 143 (378)
T PRK13018 76 ILIGKS--LTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-A 143 (378)
T ss_pred EecCCc--cCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-C
Confidence 111111 12224788886655 56678888999999999998 9999999999999999999999886 54 3
Q ss_pred ccceEEeeCCCCCCCceeeecccchhhhhh----cccccccch
Q psy17503 164 IMNTYSVVPSPKVSDTVVEPYNATLSVHQL----MSATFIGNS 202 (277)
Q Consensus 164 ~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l----~s~~~l~Ns 202 (277)
...++.+.|+. .+-.....|+.+++..| .+++++.|.
T Consensus 144 ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd 184 (378)
T PRK13018 144 LVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNN 184 (378)
T ss_pred CeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecH
Confidence 34455566643 34456778899999998 233445554
No 30
>PF13809 Tubulin_2: Tubulin like
Probab=96.80 E-value=0.012 Score=54.68 Aligned_cols=60 Identities=27% Similarity=0.268 Sum_probs=41.5
Q ss_pred eeEEeeCCCCcCCcchhHHHHHHHhhc-----cccccceEEeeCCCCCCCc---eeeecccchhhhhh
Q psy17503 134 FQLTHSLGGGTGSGMGTLLISKIREEF-----PDRIMNTYSVVPSPKVSDT---VVEPYNATLSVHQL 193 (277)
Q Consensus 134 f~~~~s~~GGtGSGlgs~lle~l~dey-----~~~~~~~~~v~p~~~~~~~---~v~~yN~~ls~~~l 193 (277)
+.|+.|++||||||+---++-.|++.+ ....+..+.+.|+...+.. ....-|+-=+|..|
T Consensus 150 V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL 217 (345)
T PF13809_consen 150 VFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKEL 217 (345)
T ss_pred EEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHH
Confidence 899999999999999888888888866 3445777888886432211 23344665555555
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=96.80 E-value=0.0073 Score=55.74 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=64.1
Q ss_pred cCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhccccccceEEeeCCCCCCCceeeeccc
Q psy17503 107 YTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNA 186 (277)
Q Consensus 107 ~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~~~~~~~~v~p~~~~~~~~v~~yN~ 186 (277)
...|.+..+...+.|+..++..| -+.++..++||||+|.+..+.+.+++ ...+..+..++|+...+ ....-|+
T Consensus 75 P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~EG--~~r~~~A 147 (338)
T COG0206 75 PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSFEG--SPRMENA 147 (338)
T ss_pred cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchhcC--chHHHHH
Confidence 34566666666777777666555 68899999999999999999999887 46677778888876433 3445577
Q ss_pred chhhhhh----cccccccch
Q psy17503 187 TLSVHQL----MSATFIGNS 202 (277)
Q Consensus 187 ~ls~~~l----~s~~~l~Ns 202 (277)
.-++..| .+..++.|.
T Consensus 148 ~~gi~~L~~~~DtlIvi~Nd 167 (338)
T COG0206 148 EEGIEELREVVDTLIVIPND 167 (338)
T ss_pred HHHHHHHHHhCCcEEEEecH
Confidence 7788777 334555554
No 32
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=82.87 E-value=0.44 Score=37.53 Aligned_cols=21 Identities=43% Similarity=0.639 Sum_probs=18.9
Q ss_pred cccccccchHHHHHHHhhhhh
Q psy17503 194 MSATFIGNSTCIQDLFKRISD 214 (277)
Q Consensus 194 ~s~~~l~NstsI~~~~~~i~~ 214 (277)
.++++|+|+|+|.++|++|.+
T Consensus 106 ~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 106 RSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp EEEEEEEEEGGGHHHHHHHHH
T ss_pred ceEEEeCChHHHHHHHHHhcC
Confidence 568999999999999999864
No 33
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=74.80 E-value=2.8 Score=33.31 Aligned_cols=26 Identities=31% Similarity=0.736 Sum_probs=21.5
Q ss_pred CCcCCcchhHHHHHHHhhccc-cccce
Q psy17503 142 GGTGSGMGTLLISKIREEFPD-RIMNT 167 (277)
Q Consensus 142 GGtGSGlgs~lle~l~dey~~-~~~~~ 167 (277)
+|-|+|+|..++++|+.++|. ..+.+
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~A 32 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIA 32 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEE
Confidence 577899999999999999998 44443
No 34
>PTZ00010 tubulin beta chain; Provisional
Probab=71.99 E-value=2.4 Score=40.92 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=41.9
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCC---CCCCccCCC--cccccccccccccccCCCccccceeeecCC
Q psy17503 4 IVHVQAGQCGNQIGAKFWEIISAEHGID---PTGAYHGDK--DNQLERINVYYNEAQGRNVYVPRAILVDLE 70 (277)
Q Consensus 4 iItiq~Gq~GnqiG~~~W~~~~~e~~~~---~~g~~~~~~--~~~~~~~~~~F~e~~~~~~~~pRavlvDle 70 (277)
|++...|++|.++|+.+|+.+.++|+-. ..+.+|... +......++.+....- ..+.++.+++|-+
T Consensus 135 i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l-~~~~d~~i~~dN~ 205 (445)
T PTZ00010 135 ITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQL-VENADESMCIDNE 205 (445)
T ss_pred EEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHH-HhcCCceeeeccH
Confidence 6778899999999999999999999632 123333211 1111223444444333 4577888888855
No 35
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=55.19 E-value=10 Score=29.92 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=23.9
Q ss_pred hhhhHHHHHhhhhccCCCCCeeEEeeCCCCc
Q psy17503 114 VDSVLDVVRKEAENCDCLQGFQLTHSLGGGT 144 (277)
Q Consensus 114 ~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGt 144 (277)
.+...++|+..+++++. .|..++.++ ||+
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gss 69 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSA 69 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CCh
Confidence 34567788888888899 999999999 765
No 36
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=43.26 E-value=49 Score=25.21 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=25.2
Q ss_pred hhhhHHHHHhhhhccCCCCCeeEEeeCCCCc
Q psy17503 114 VDSVLDVVRKEAENCDCLQGFQLTHSLGGGT 144 (277)
Q Consensus 114 ~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGt 144 (277)
.+.+.++++..+++.+.-+|+.++.++.||+
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGS 70 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCc
Confidence 4556677777778888889999999999876
No 37
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=42.80 E-value=63 Score=24.87 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=23.3
Q ss_pred hhhHHHHHhhhhccCCCCCeeEEeeCCCCc
Q psy17503 115 DSVLDVVRKEAENCDCLQGFQLTHSLGGGT 144 (277)
Q Consensus 115 ~~~~d~iR~~~E~cD~lqgf~~~~s~~GGt 144 (277)
+.+.+++++.+++.+.-+|+.++.++-|||
T Consensus 41 ~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 41 DDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 455666667677777778999999999887
No 38
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=42.15 E-value=72 Score=24.52 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=23.9
Q ss_pred hhhhHHHHHhhhhccCCCCCeeEEeeCCCCc
Q psy17503 114 VDSVLDVVRKEAENCDCLQGFQLTHSLGGGT 144 (277)
Q Consensus 114 ~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGt 144 (277)
.+.+.++++..+++.+.=+|+.++.++-|||
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGS 71 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGS 71 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence 3456667777777666668999999999988
No 39
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=33.92 E-value=41 Score=32.31 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=24.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCC
Q psy17503 4 IVHVQAGQCGNQIGAKFWEIISAEHGID 31 (277)
Q Consensus 4 iItiq~Gq~GnqiG~~~W~~~~~e~~~~ 31 (277)
|++...|++|..+|+.+|+.+.++++..
T Consensus 136 i~~sl~GGTGSGlgs~l~e~l~d~y~~~ 163 (434)
T cd02186 136 IFHSFGGGTGSGFGSLLLERLSVDYGKK 163 (434)
T ss_pred EEeccCCCcchhHHHHHHHHHHHhcCcc
Confidence 6777889999999999999999999743
No 40
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=31.55 E-value=42 Score=26.63 Aligned_cols=51 Identities=24% Similarity=0.340 Sum_probs=29.0
Q ss_pred cccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhh
Q psy17503 105 GHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 159 (277)
Q Consensus 105 G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~de 159 (277)
|++.....+.+.+...+++...++..-+=+.+=||+||+ +++++..++...
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~ 52 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGR 52 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhc
Confidence 444444555566666666655555555556677777544 455555555554
No 41
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=28.09 E-value=60 Score=22.36 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.3
Q ss_pred CCcchhHHHHHHHhhccccccc
Q psy17503 145 GSGMGTLLISKIREEFPDRIMN 166 (277)
Q Consensus 145 GSGlgs~lle~l~dey~~~~~~ 166 (277)
|.|+|+.|+..+.+.++++.+.
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~ 61 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIF 61 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEE
Confidence 5799999999999998766554
No 42
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=25.91 E-value=46 Score=18.75 Aligned_cols=13 Identities=38% Similarity=1.025 Sum_probs=9.2
Q ss_pred CCCcCCcchhHHH
Q psy17503 141 GGGTGSGMGTLLI 153 (277)
Q Consensus 141 ~GGtGSGlgs~ll 153 (277)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 4678888876554
No 43
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=25.60 E-value=1.3e+02 Score=27.89 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=17.1
Q ss_pred CCcchhHHHH---HHHhhccccccce-EEeeC
Q psy17503 145 GSGMGTLLIS---KIREEFPDRIMNT-YSVVP 172 (277)
Q Consensus 145 GSGlgs~lle---~l~dey~~~~~~~-~~v~p 172 (277)
++|++..... .|.+.||+..-.+ +.|+.
T Consensus 212 ~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLH 243 (369)
T PF02456_consen 212 HKSISKFFHALPSKLHDRFPKCTGYYVFVVLH 243 (369)
T ss_pred CCChhHHHhcCcHHHhhhccCCceeEEEEEec
Confidence 4667766654 4778899775444 33444
No 44
>PLN02847 triacylglycerol lipase
Probab=25.51 E-value=47 Score=33.32 Aligned_cols=61 Identities=26% Similarity=0.331 Sum_probs=37.5
Q ss_pred cccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHh--hccccccceEE
Q psy17503 105 GHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE--EFPDRIMNTYS 169 (277)
Q Consensus 105 G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~d--ey~~~~~~~~~ 169 (277)
|++...+-+.+.+...|++.+++|...+=+.+=||+|||+ ++++.-.|+. .|++...++|+
T Consensus 225 Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 225 GMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 3333334456666777777788887766677778997655 5665555664 45554444443
No 45
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=25.35 E-value=16 Score=17.32 Aligned_cols=10 Identities=50% Similarity=1.278 Sum_probs=5.6
Q ss_pred ccccCccccC
Q psy17503 99 GNNWAKGHYT 108 (277)
Q Consensus 99 ~nnwa~G~~~ 108 (277)
++.||.|++.
T Consensus 1 g~~WAvGh~M 10 (14)
T PF02044_consen 1 GPQWAVGHFM 10 (14)
T ss_dssp --TCHHHCT-
T ss_pred CCccceeeee
Confidence 4678888763
No 46
>PLN00221 tubulin alpha chain; Provisional
Probab=25.03 E-value=62 Score=31.30 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.6
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCCC
Q psy17503 4 IVHVQAGQCGNQIGAKFWEIISAEHGID 31 (277)
Q Consensus 4 iItiq~Gq~GnqiG~~~W~~~~~e~~~~ 31 (277)
|++...|++|..+|+.+|+.+.++++-.
T Consensus 137 i~~Sl~GGtGSGlgs~~le~l~d~y~~~ 164 (450)
T PLN00221 137 VFNAVGGGTGSGLGSLLLERLSVDYGKK 164 (450)
T ss_pred EeeccCCCccchHHHHHHHHHHHhcccc
Confidence 6777889999999999999999999743
No 47
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=24.95 E-value=90 Score=22.99 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=36.1
Q ss_pred ccccchHHHHHHHhhhhhhhhhhcccccccccccCCC-----CCccchhHHHHHHHH
Q psy17503 197 TFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEG-----MDEMEFTEAESNMID 248 (277)
Q Consensus 197 ~~l~NstsI~~~~~~i~~~f~~m~~~~aflh~y~~eg-----m~~~~f~ea~~~l~~ 248 (277)
+.+..+....++..+|..+|.. ++.|.=.|..|| ++++|+++|..+..+
T Consensus 16 i~v~~~i~f~dL~~kIrdkf~~---~~~~~iKykDEGD~iti~sq~DLd~Ai~~a~~ 69 (86)
T cd06408 16 IMIGPDTGFADFEDKIRDKFGF---KRRLKIKMKDDGDMITMGDQDDLDMAIDTARS 69 (86)
T ss_pred EEcCCCCCHHHHHHHHHHHhCC---CCceEEEEEcCCCCccccCHHHHHHHHHHHHH
Confidence 4566777888899999998874 467777888886 457777777765544
No 48
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=24.21 E-value=59 Score=27.75 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=32.6
Q ss_pred ccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhc
Q psy17503 104 KGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEF 160 (277)
Q Consensus 104 ~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey 160 (277)
+|++..-..+.+.+...++...+++...+=+..=||+|| ++++++.-.|...+
T Consensus 101 ~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGG----aiA~l~a~~l~~~~ 153 (229)
T cd00519 101 SGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGG----ALASLLALDLRLRG 153 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHH----HHHHHHHHHHHhhC
Confidence 455544445566666667666666655555677778754 45666666666654
No 49
>PTZ00335 tubulin alpha chain; Provisional
Probab=24.12 E-value=67 Score=31.02 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.9
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhhCC
Q psy17503 4 IVHVQAGQCGNQIGAKFWEIISAEHGI 30 (277)
Q Consensus 4 iItiq~Gq~GnqiG~~~W~~~~~e~~~ 30 (277)
|++.--|++|..+|+.+|+.+.++++-
T Consensus 137 i~~Sl~GGTGSGlgs~l~e~l~d~yp~ 163 (448)
T PTZ00335 137 VFHAVGGGTGSGLGSLLLERLSVDYGK 163 (448)
T ss_pred EeeccCCCccchHHHHHHHHHHHhccc
Confidence 566678899999999999999999964
No 50
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=23.04 E-value=19 Score=29.94 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=24.3
Q ss_pred hhcccccccccccCCCCCccchhHHHHHHHHHHHHHHHHhh
Q psy17503 218 AMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQE 258 (277)
Q Consensus 218 ~m~~~~aflh~y~~egm~~~~f~ea~~~l~~l~~~Y~~~~~ 258 (277)
+=|....||+||+.|..++. ..++++++.++-+..
T Consensus 112 kD~~T~nFLqWfv~EQ~eEe------~l~~~I~d~~~~ag~ 146 (167)
T COG1528 112 KDYATFNFLQWFVAEQVEEE------KLFKTILDKLELAGN 146 (167)
T ss_pred CchhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCC
Confidence 34666789999999877653 456667777666543
No 51
>PF12910 RelB_N: Antitoxin of toxin-antitoxin stability system N-terminal; PDB: 3K6Q_C.
Probab=23.00 E-value=66 Score=20.49 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=15.5
Q ss_pred CCccchhHHHHHHHHHHHHHH
Q psy17503 234 MDEMEFTEAESNMIDLVSEYQ 254 (277)
Q Consensus 234 m~~~~f~ea~~~l~~l~~~Y~ 254 (277)
|..-.|+|||.+|..|++.=.
T Consensus 1 M~~~~~~eAR~~ls~l~d~v~ 21 (46)
T PF12910_consen 1 METVNYSEARNNLSKLIDRVV 21 (46)
T ss_dssp --EEEHHHHHHTHHHHHHHHH
T ss_pred CeEEeHHHHHHhHHHHHHHHH
Confidence 444568999999999997643
No 52
>PF12532 DUF3732: Protein of unknown function (DUF3732); InterPro: IPR022205 This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
Probab=22.68 E-value=2.6e+02 Score=23.70 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=25.1
Q ss_pred ecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeec
Q psy17503 8 QAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVD 68 (277)
Q Consensus 8 q~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvD 68 (277)
.+|-..|.++.|+-=.+.. | -||..-. ..++|+-+++|
T Consensus 70 ~~GSgaNwl~~Hla~fLaL-H--------------------~~f~~~~--~~~VP~fL~lD 107 (193)
T PF12532_consen 70 EMGSGANWLAYHLALFLAL-H--------------------EFFAKNE--KRPVPSFLFLD 107 (193)
T ss_pred hcCChHHHHHHHHHHHHHH-H--------------------HHHHhcC--CCCCCCeeeec
Confidence 5788888888888544433 2 2443322 46899999998
No 53
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=22.05 E-value=52 Score=32.74 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=17.9
Q ss_pred CCcCCcchhHHHHHHHhhccccccc
Q psy17503 142 GGTGSGMGTLLISKIREEFPDRIMN 166 (277)
Q Consensus 142 GGtGSGlgs~lle~l~dey~~~~~~ 166 (277)
||+| .+||.++..+...-|++.++
T Consensus 257 GagG-SiGsel~~qil~~~p~~i~l 280 (588)
T COG1086 257 GGGG-SIGSELCRQILKFNPKEIIL 280 (588)
T ss_pred CCCC-cHHHHHHHHHHhcCCCEEEE
Confidence 6665 49999999988777776543
No 54
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=21.93 E-value=1.1e+02 Score=26.75 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=21.4
Q ss_pred EEeeCCCCcCCcchhHHHHHHHhhcccc
Q psy17503 136 LTHSLGGGTGSGMGTLLISKIREEFPDR 163 (277)
Q Consensus 136 ~~~s~~GGtGSGlgs~lle~l~dey~~~ 163 (277)
++-.++||.|||= +.++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5667899999998 66778888888755
No 55
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=56 Score=28.25 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=14.8
Q ss_pred CCCcCCcchhHHHHHHHh
Q psy17503 141 GGGTGSGMGTLLISKIRE 158 (277)
Q Consensus 141 ~GGtGSGlgs~lle~l~d 158 (277)
.-|||||+.+.++.+|..
T Consensus 78 EIGtGsGY~aAvla~l~~ 95 (209)
T COG2518 78 EIGTGSGYQAAVLARLVG 95 (209)
T ss_pred EECCCchHHHHHHHHHhC
Confidence 358999999999988764
No 56
>COG4053 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.34 E-value=1.1e+02 Score=26.03 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=40.3
Q ss_pred hhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhccccccceEEeeC
Q psy17503 115 DSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVP 172 (277)
Q Consensus 115 ~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey~~~~~~~~~v~p 172 (277)
..+.+.+|+.+|.-|.|.|+- ..-.|.|-|++-...+--.++||...+.+|-.+-
T Consensus 69 ~aifevlr~y~eg~~Dl~GiS---e~pdgAGEG~SYAeAa~~~seY~Davi~aFDTYg 123 (244)
T COG4053 69 KAIFEVLRKYAEGFDDLRGIS---EDPDGAGEGLSYAEAASPISEYGDAVIIAFDTYG 123 (244)
T ss_pred HHHHHHHHHHhhccccccccc---CCCCcCCCCchHhhhcCchhhcCceEEEEEeccc
Confidence 347789999999999998864 3335556777666666567899999888776554
Done!