RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17503
(277 letters)
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 432 bits (1114), Expect = e-153
Identities = 173/204 (84%), Positives = 185/204 (90%), Gaps = 5/204 (2%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYV 61
REIVH+QAGQCGNQIGAKFWE+IS EHG+DPTG Y GD D QLERINVY+NEA G YV
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGK-YV 59
Query: 62 PRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 121
PRAILVDLEPGTMD+ RSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 60 PRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 119
Query: 122 RKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVV 181
RKEAE+CDCLQGFQLTHSLGGGTGSGMGTLLISKIREE+PDRIM T+SV PSPKVSDTVV
Sbjct: 120 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVV 179
Query: 182 EPYNATLSVHQLMS---ATF-IGN 201
EPYNATLSVHQL+ TF I N
Sbjct: 180 EPYNATLSVHQLVENSDETFCIDN 203
Score = 155 bits (393), Expect = 2e-44
Identities = 59/66 (89%), Positives = 61/66 (92%)
Query: 192 QLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVS 251
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVS
Sbjct: 360 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 419
Query: 252 EYQQYQ 257
EYQQYQ
Sbjct: 420 EYQQYQ 425
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 418 bits (1076), Expect = e-146
Identities = 167/194 (86%), Positives = 180/194 (92%), Gaps = 1/194 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG YHGD D QLERINVYYNEA G Y
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASG-GRY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRA+L+DLEPGTMD+ RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDV
Sbjct: 60 VPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 119
Query: 121 VRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKEAENCDCLQGFQ+ HSLGGGTGSGMGTLLISKIREE+PDR+M T+SV PSPKVSDTV
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLM 194
VEPYNATLSVHQL+
Sbjct: 180 VEPYNATLSVHQLV 193
Score = 163 bits (415), Expect = 1e-47
Identities = 62/79 (78%), Positives = 75/79 (94%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
M++TFIGNST IQ++F+R+S+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQEATVEEDGEFEEDEE 272
QQYQ+AT +E+GE+E++EE
Sbjct: 423 QQYQDATADEEGEYEDEEE 441
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 407 bits (1048), Expect = e-142
Identities = 166/194 (85%), Positives = 182/194 (93%), Gaps = 1/194 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIG+KFWE+IS EHGIDPTG Y GD D QLERINVYYNEA G Y
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATG-GRY 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRA+L+DLEPGTMD+ R+GPYGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAEL+DSVLDV
Sbjct: 60 VPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDV 119
Query: 121 VRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKEAE+CDCLQGFQ+THSLGGGTGSGMGTLLISK+REE+PDRIM T+SV PSPKVSDTV
Sbjct: 120 VRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLM 194
VEPYNATLSVHQL+
Sbjct: 180 VEPYNATLSVHQLV 193
Score = 168 bits (426), Expect = 3e-49
Identities = 66/83 (79%), Positives = 75/83 (90%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MS TFIGNST IQ++F+R+ +QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQEATVEEDGEFEEDEEPLEE 276
QQYQ+ATVEE+GEF+E+EE E
Sbjct: 423 QQYQDATVEEEGEFDEEEEAYEI 445
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 345 bits (888), Expect = e-118
Identities = 117/214 (54%), Positives = 158/214 (73%), Gaps = 4/214 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREI+ +Q GQCGNQIG FWE + EHGI P G D ER +V++ EA +
Sbjct: 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEA-SDGKF 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPG +D R+GPYG +F P+N +FG+ GAGNNWA+GHYT G E++D V+D+
Sbjct: 60 VPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDM 119
Query: 121 VRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTV 180
+R+EA+ CD LQGF L HSLGGGTGSG+G+LL+ ++REE+P +I T+SV P+PKVSD V
Sbjct: 120 IRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVV 179
Query: 181 VEPYNATLSVHQLM---SATFIGNSTCIQDLFKR 211
VEPYN+ L++H+L+ TF+ ++ + D+ +R
Sbjct: 180 VEPYNSVLTLHRLLENSDCTFVVDNEALYDICRR 213
Score = 125 bits (316), Expect = 3e-33
Identities = 36/78 (46%), Positives = 54/78 (69%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
+S + N+T I + FKRI DQF+ MF+++AFLHWY GEGM+E EF+EA ++ DL EY
Sbjct: 366 VSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEY 425
Query: 254 QQYQEATVEEDGEFEEDE 271
+ ++ + +D E EE+
Sbjct: 426 EAAEQDSYLDDEEDEEEM 443
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 223 bits (570), Expect = 1e-70
Identities = 87/207 (42%), Positives = 137/207 (66%), Gaps = 10/207 (4%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYV 61
REI+ +Q GQCGNQIG++FW+ + AEHGI P G + +R +V++ +A YV
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQA-DDEHYV 59
Query: 62 PRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLD 119
PRAIL+DLEP +++ ++ Y ++ P+N + GAGNNWA G Y++G E+ + +LD
Sbjct: 60 PRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASG-YSQGEEVQEEILD 118
Query: 120 VVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVP-SPKVSD 178
++ +EA+ D L+GF L HS+ GGTGSGMG+ L+ ++ + +P +++ TYSV P + SD
Sbjct: 119 IIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSD 178
Query: 179 TVVEPYNATLSVHQLMSATFIGNSTCI 205
VV+PYN+ L++ +L I N+ C+
Sbjct: 179 VVVQPYNSILTLKRL-----ILNADCV 200
Score = 49.9 bits (120), Expect = 5e-07
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 153 ISKIREEFPDRIMNTY--SVVPSPKVSDTVVEPYNATLS-VHQLMSATFIGNSTCIQDLF 209
+ +IRE R + + S +V+ + PY T V LM A N T I LF
Sbjct: 333 LQRIRE----RRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLA----NHTSIASLF 384
Query: 210 KRISDQFNAMFRRKAFLHWYTGEGMDEM---EFTEAESNMIDLVSEY 253
+RI QF+ + +R+AFL Y E M EF E+ + L+ EY
Sbjct: 385 ERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 217 bits (556), Expect = 5e-69
Identities = 87/218 (39%), Positives = 127/218 (58%), Gaps = 46/218 (21%)
Query: 3 EIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVP 62
EI+ +Q GQCGNQIG KFWE+
Sbjct: 1 EIISIQIGQCGNQIGNKFWEL--------------------------------------- 21
Query: 63 RAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 122
ILVDL+P ++ G ++F P+ V G+ G+GNNWA+G+YT G EL+D +LD +R
Sbjct: 22 -LILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIR 80
Query: 123 KEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVE 182
K+ E CD LQGFQ+THSLGGGTGSG+G+LL+ + +E+P ++NT+S+ PSP+ S VVE
Sbjct: 81 KQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVE 140
Query: 183 PYNATLSVHQLMSATFIGNSTCIQD---LFKRISDQFN 217
PYN+ LS++ L+ + +S + D L+ ++ Q +
Sbjct: 141 PYNSILSLNHLLENS---DSVILFDNEALYNILTRQLD 175
Score = 98.9 bits (247), Expect = 6e-24
Identities = 35/62 (56%), Positives = 49/62 (79%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
SA F+ NST I + +R+ ++F+ +++RKAFLHWY GEGMDEMEFTEAES++ DL+ Y
Sbjct: 321 KSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSY 380
Query: 254 QQ 255
Q+
Sbjct: 381 QE 382
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 209 bits (534), Expect = 2e-66
Identities = 81/191 (42%), Positives = 107/191 (56%), Gaps = 41/191 (21%)
Query: 3 EIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVP 62
EIV +Q GQ GNQIGAKFWE +
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------- 22
Query: 63 RAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 122
+LVD EPG +D T SGPY +F + GAGNNWA GH T G E + +LD++R
Sbjct: 23 --VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIR 80
Query: 123 KEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVE 182
KEAE CD LQGF +THSLGGGTGSG+G +L ++++E+P R+ T+S++P P +V
Sbjct: 81 KEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEG-VIVR 139
Query: 183 PYNATLSVHQL 193
PYN+ L++H L
Sbjct: 140 PYNSILTLHTL 150
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 209 bits (534), Expect = 3e-65
Identities = 86/195 (44%), Positives = 122/195 (62%), Gaps = 3/195 (1%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLER--INVYYNEAQGRNV 59
RE++ + GQ G QIG WE+ EHGI P G DK N +++E
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGK- 59
Query: 60 YVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 119
+VPRA+ +DLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 60 HVPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLD 119
Query: 120 VVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDT 179
+RK A+NC LQGF + HS GGGTGSG G+LL+ ++ ++ + ++V PSP+VS
Sbjct: 120 RIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTA 179
Query: 180 VVEPYNATLSVHQLM 194
VVEPYN+ L+ H L+
Sbjct: 180 VVEPYNSVLTTHSLL 194
Score = 77.3 bits (191), Expect = 4e-16
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 373 AVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 432
Query: 255 Q 255
+
Sbjct: 433 E 433
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 206 bits (527), Expect = 5e-64
Identities = 86/199 (43%), Positives = 127/199 (63%), Gaps = 3/199 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLE--RINVYYNEAQGRN 58
MRE++ + GQ G Q+G WE+ EHGI P G DK+ +E N +++E
Sbjct: 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGK 60
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPR + +DLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 61 -HVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 119 DVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+NC LQGF + H++GGGTGSG+G+LL+ ++ ++ + +++ PSP+VS
Sbjct: 120 DRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 179 TVVEPYNATLSVHQLMSAT 197
VVEPYN+ LS H L+ T
Sbjct: 180 AVVEPYNSVLSTHSLLEHT 198
Score = 78.6 bits (194), Expect = 1e-16
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 195 SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQ 254
+ I NST I ++F RI +F+ M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 255 QYQEATVEEDGEFEE 269
+ + +E+GE +
Sbjct: 434 EVGAESADEEGEEDV 448
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 195 bits (498), Expect = 2e-62
Identities = 74/191 (38%), Positives = 107/191 (56%), Gaps = 12/191 (6%)
Query: 4 IVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPR 63
I+ + G GN IG WE++ EHGIDP G ++INV++ E G VY PR
Sbjct: 1 IIVIGVGGAGNNIGNALWELLCKEHGIDPDG-----MLFHADKINVFFEE-SGDGVYGPR 54
Query: 64 AILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 123
I +D +P ++ ++G ++F +N G GAGNN A G+YT E + L+ +RK
Sbjct: 55 FIAIDTDPQVLNEIKAGN--KLFIGNNLTKGLEGAGNNPAVGYYT-HKEAAEESLEEIRK 111
Query: 124 EAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEP 183
E E CD L GF +T LGGGTGSG ++ ++E + + T +VV P S+ VV P
Sbjct: 112 ELEKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELY-GAL--TVAVVTFPFTSEGVVRP 168
Query: 184 YNATLSVHQLM 194
YNA L + +L+
Sbjct: 169 YNAILGLKELI 179
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 199 bits (508), Expect = 3e-61
Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQL--ERINVYYNEAQGRN 58
MRE + + GQ G Q+G WE+ EHGI P G DK + N +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET-GAG 59
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 119 DVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+NC LQGF + +++GGGTGSG+G+LL+ ++ ++ + ++V PSP+VS
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 179 TVVEPYNATLSVHQLMSAT 197
VVEPYN+ LS H L+ T
Sbjct: 180 AVVEPYNSVLSTHSLLEHT 198
Score = 72.5 bits (178), Expect = 2e-14
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 199 IGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQE 258
I NST + ++F RI +F+ M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 ISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 437
Query: 259 ATVEEDGEFEED 270
+ E +G+ E+
Sbjct: 438 ESAEGEGDEGEE 449
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 191 bits (486), Expect = 6e-58
Identities = 76/195 (38%), Positives = 124/195 (63%), Gaps = 5/195 (2%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYV 61
REI+ +Q GQCGNQIG +FW+ + EHGI G +R +V++ +A + Y+
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEH-YI 61
Query: 62 PRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDSVLD 119
PRA+L+DLEP ++ ++ Y ++ +N G AGNNWA G Y +G ++ + ++D
Sbjct: 62 PRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASG-YHQGEQVEEDIMD 120
Query: 120 VVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPS-PKVSD 178
++ +EA+ D L+GF L HS+ GGTGSGMG+ L+ + + + +++ TYSV P+ + SD
Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSD 180
Query: 179 TVVEPYNATLSVHQL 193
VV+PYN+ L++ +L
Sbjct: 181 VVVQPYNSLLTLKRL 195
Score = 40.6 bits (95), Expect = 7e-04
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 183 PYNATL-SVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGM----DEM 237
PY T V LM A N T I+ LF + Q++ + +++AFL Y M D
Sbjct: 367 PYVQTAHRVSGLMLA----NHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLS 422
Query: 238 EFTEAESNMIDLVSEYQ 254
EF E+ + LV EY+
Sbjct: 423 EFDESREIVESLVDEYK 439
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 186 bits (474), Expect = 6e-56
Identities = 89/249 (35%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEH-GIDPTGAYHGDKDNQLERINVYYNEAQGRNV 59
REIV VQ GQCGNQ+G +FW++ EH I+ Y +D+ E ++ N G+
Sbjct: 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQYDDARDSFFENVSENVNRP-GKEN 59
Query: 60 YVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 119
RA+LVD+E G ++ P G +F + FV SGAGNNWA GH G + +DS+ +
Sbjct: 60 LKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISE 119
Query: 120 VVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDT 179
VR++ E CD LQ F L HSLGGGTGSG+GT ++ + +EFP V PS V D
Sbjct: 120 SVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPS-AVDDV 178
Query: 180 VVEPYNATLSVHQLMSATFIGNSTCI----QDLFKRISDQFNAMFRRKAFLHWYTGEGMD 235
+ PYN+ ++ +L I ++ C+ D I+D + ++K G
Sbjct: 179 ITSPYNSFFALREL-----IEHADCVLPLDNDALANIADSALSR-KKKKLAKGNIKRGPQ 232
Query: 236 EMEFTEAES 244
+++ A+
Sbjct: 233 PHKYSVAKP 241
Score = 54.7 bits (132), Expect = 2e-08
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 201 NSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEA 259
N+ CI++ F+ + ++FN +++RK+ +H YT E +++ F E + +L+ +Y Q A
Sbjct: 395 NNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 175 bits (447), Expect = 9e-53
Identities = 74/192 (38%), Positives = 103/192 (53%), Gaps = 32/192 (16%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYV 61
REI+ VQ GQCGNQIG +FW++ EH
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH-------------------------------LK 29
Query: 62 PRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 121
RA+L+D+E G ++ GP +F V SGAGNNWA G++ G + +DS+L+ +
Sbjct: 30 ARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKI 89
Query: 122 RKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVV 181
RK AE CD LQ F + HSLGGGTGSG+GT ++ + +EFP+ SV PS D +
Sbjct: 90 RKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPS-ADDDVIT 148
Query: 182 EPYNATLSVHQL 193
PYN+ L++ +L
Sbjct: 149 SPYNSVLALREL 160
Score = 64.6 bits (158), Expect = 6e-12
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 187 TLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNM 246
V S + N+TCI+ F + ++F +++RKA LH YT GM++ +FTEA ++
Sbjct: 310 VPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTEALESI 369
Query: 247 IDLVSEYQQ 255
+L+ EY
Sbjct: 370 SNLIDEYDY 378
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 169 bits (429), Expect = 1e-49
Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Query: 4 IVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPR 63
+V VQ GQCGNQ+G + ++ ++ E Y ++D Q + + R
Sbjct: 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKYERDAQERF-----FSEKSDGQPIAR 56
Query: 64 AILVDLEPGTMDATRSGPYGQI--FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 121
++LVD+EP +++T S G + N + QSG+GNNWA G+Y G ++ + +LD++
Sbjct: 57 SVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLI 116
Query: 122 RKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDR-IMNTYSVVPSPKVSDTV 180
RKE E CD +GF + HSL GGTGSG+G+ + +R+E+P+ ++N VV + +
Sbjct: 117 RKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNI--VVWPYTTGEVI 174
Query: 181 VEPYNATLSVHQL 193
V+ YN L++ L
Sbjct: 175 VQNYNTVLTLAHL 187
Score = 48.5 bits (116), Expect = 2e-06
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 191 HQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLV 250
S T + NS I D I ++ MF A+LH Y G++E +F +A + + ++
Sbjct: 382 KYEKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQII 441
Query: 251 SEYQ 254
+ Y+
Sbjct: 442 ASYK 445
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 158 bits (401), Expect = 3e-48
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 56 GRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT-----EG 110
G P A+ VDLEPG +D R+ Q P++ G+ AGNNW +G G
Sbjct: 6 GVGGGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLGAGADPEVG 65
Query: 111 AELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSV 170
E + LD +R+E E D G +T +GGGTG+G ++ + E+ + +V
Sbjct: 66 REAAEESLDEIREELEGAD---GVFITAGMGGGTGTGAAPVIAEIAK-EYGILTV---AV 118
Query: 171 VPSPKVSDTVVEPYNATLSVHQLM 194
V P + VV PYNA L + +L
Sbjct: 119 VTKPFSFEGVVRPYNAELGLEELR 142
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 56.2 bits (136), Expect = 5e-09
Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 58/233 (24%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERIN--VYYNE---AQG 56
RE++ +Q G N +G +W + A G DP D+ ++ V Y E QG
Sbjct: 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDP--------DSPASELDHDVLYREGRTRQG 52
Query: 57 RNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNW-----AKGH----- 106
+ Y PR +L+DL+ GT+ +++ + V N W A+ H
Sbjct: 53 QVTYTPRLLLLDLK-GTLGHLPEEGSLKVYNLEASV-------NVWSDYLYARLHPRSIN 104
Query: 107 ----------------YTEGAEL------VDSVLDVVRKEAENCDCLQGFQLTHSLGGGT 144
+ +G L + D +R E CD LQGFQ+ L G
Sbjct: 105 VINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF 164
Query: 145 GSGMGTLLISKIREEFPDRIMNT---YSVVPSPKVSDT-VVEPYNATLSVHQL 193
SG+G + +++E+ + V+P SD + N L + QL
Sbjct: 165 -SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQL 216
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 41.8 bits (99), Expect = 4e-05
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 154 SKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRIS 213
K F + I N S KV+ V PY S +S + N+T IQ+LFKRI
Sbjct: 75 EKNSANFVEWIPN------SIKVAICDVPPYGLPGS---DVSGLMLANTTAIQELFKRIL 125
Query: 214 D 214
+
Sbjct: 126 E 126
>gnl|CDD|220832 pfam10644, Misat_Myo_SegII, Misato Segment II myosin-like domain.
The misato protein contains three distinct, conserved
domains, segments I, II and III. Segments I and III are
common to Tubulins pfam00091, but segment II aligns
with myosin heavy chain sequences from D. melanogaster
(PIR C35815), rabbit (SP P04460), and human (PIR
S12458). Segment II of misato is a major contributor to
its greater length compared with the various tubulins.
The most significant sequence similarities to this
54-amino acid region are from a motif found in the
heavy chains of myosins from different organisms. A
comparison of segment II with the vertebrate myosin
heavy chains reveals that it is homologous to a myosin
peptide in the hinge region linking the S2 and LMM
domains. Segment II also contains heptad repeats which
are characteristic of the myosin tail alpha-helical
coiled-coils.
Length = 103
Score = 38.1 bits (89), Expect = 5e-04
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNE---AQGRN 58
REI+ +Q GQ N +G FW + DP D L +V + E G
Sbjct: 4 REIITLQLGQYANYVGTHFWNQQESYFTYDP------DAPESLIDHDVLFREGLTQDGVE 57
Query: 59 VYVPRAILVDLE 70
Y PR +L DL+
Sbjct: 58 TYTPRLLLYDLK 69
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 38.9 bits (91), Expect = 0.002
Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 50/182 (27%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MR ++ + GQ G +I ++ + Y
Sbjct: 1 MRVLI-IGVGQAGGRIVDALNR-----------------------------HDKRSGFGY 30
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQS-------GAGNNWAKGHYTEGAEL 113
A+ ++ + + P D + GQS GA E E
Sbjct: 31 CVGALAINTAKNDLKGLKHIP-----AEDRILIGQSEVKGHGVGADRELGAEVAEEDLEE 85
Query: 114 VDSVLD-VVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVP 172
V +D +A+ + LGGGTGSG G +++K +E + + V+P
Sbjct: 86 VMRAIDDRGTSDAD------AILVIAGLGGGTGSG-GAPVLAKELKERYEEPVYALGVLP 138
Query: 173 SP 174
+
Sbjct: 139 AR 140
>gnl|CDD|193426 pfam12953, DUF3842, Domain of unknown function (DUF3842). This
short protein is found mainly in firmicute bacteria. It
is functionally uncharacterized.
Length = 131
Score = 33.6 bits (78), Expect = 0.032
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 143 GTGSGMGTLLISKIREEFPDRI 164
G G G+G +I K+R+E P+RI
Sbjct: 7 GQGGGIGKQIIEKLRKELPERI 28
>gnl|CDD|99910 cd05568, PTS_IIB_bgl_like, PTS_IIB_bgl_like: the PTS
(phosphotransferase system) IIB domain of a family of
sensory systems composed of a membrane-bound
sugar-sensor (similar to BglF) and a transcription
antiterminator (similar to BglG) which regulate
expression of genes involved in sugar utilization. The
domain architecture of the IIB-containing protein
includes a region N-terminal to the IIB domain which is
homologous to the BglG transcription antiterminator with
an RNA-binding domain followed by two homologous
domains, PRD1 and PRD2 (PTS Regulation Domains).
C-terminal to the IIB domain is a domain similar to the
PTS IIA domain. In this system, the BglG-like region and
the IIB and IIA-like domains are all expressed together
as a single multidomain protein. The IIB domain fold
includes a central four-stranded parallel open twisted
beta-sheet flanked by alpha-helices on both sides. The
seven major PTS systems with this IIB fold include this
sensory system with similarity to the bacterial bgl
system, chitobiose/lichenan, ascorbate, lactose,
galactitol, mannitol, and fructose systems.
Length = 85
Score = 29.0 bits (66), Expect = 0.74
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 145 GSGMGT--LLISKIREEFPDR-IMNTYSV 170
SG+GT LL SK+++ FP+ I++ S+
Sbjct: 8 PSGIGTSRLLKSKLKKLFPEIEIIDVISL 36
>gnl|CDD|218017 pfam04305, DUF455, Protein of unknown function (DUF455).
Length = 250
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 3 EIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYH 37
EI HV IG +++ + G+DP +
Sbjct: 191 EIGHVA-------IGNRWFRFLCERRGLDPIETFR 218
>gnl|CDD|183095 PRK11352, PRK11352, regulator protein FrmR; Provisional.
Length = 91
Score = 27.9 bits (62), Expect = 2.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 126 ENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTV 180
+ +C Q ++ G M +L S IRE F + YS S V DT+
Sbjct: 31 GDAECRAILQQIAAVRGAANGLMAEVLESHIRETFDR--NDCYSREVSQSVDDTI 83
>gnl|CDD|222394 pfam13809, Tubulin_2, Tubulin like. Many of the residues conserved
in Tubulin, pfam00091, are also highly conserved in this
family.
Length = 345
Score = 29.2 bits (66), Expect = 2.5
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 87 RPDNFVFGQSGAGNNWAKG------HYTEGAELVDSVLDVVRKEAENCDCLQG---FQLT 137
+N ++GAG A G +Y + +++ L +E +G +
Sbjct: 95 LVENITSIEAGAGQIRAVGRLAFFHNYQAIRQAIETALKRTFLLSEGQKVGEGGVNVFVV 154
Query: 138 HSLGGGTGSGM 148
SL GGTGSGM
Sbjct: 155 GSLSGGTGSGM 165
>gnl|CDD|216996 pfam02364, Glucan_synthase, 1,3-beta-glucan synthase component.
This family consists of various 1,3-beta-glucan synthase
components including Gls1, Gls2 and Gls3 from yeast.
1,3-beta-glucan synthase EC:2.4.1.34 also known as
callose synthase catalyzes the formation of a
beta-1,3-glucan polymer that is a major component of the
fungal cell wall. The reaction catalyzed is:-
UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP +
{(1,3)-beta-D-glucosyl}(N+1).
Length = 818
Score = 28.9 bits (65), Expect = 3.4
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 198 FIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFT--------------EAE 243
F+ S I+ L++ + + +F + E M +F EAE
Sbjct: 151 FMNYSRAIKLLYRVENPESVQLFGGNSDSLERELERMARRKFKYVVSMQRYAKFKKEEAE 210
Query: 244 SNMIDLVSEYQQYQEATVEEDGEFEEDEEP 273
N L+ Y Q A ++E+ E EP
Sbjct: 211 -NAEFLLRAYPDLQIAYLDEEPPEAEGGEP 239
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 28.4 bits (64), Expect = 3.4
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 129 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATL 188
D L +L + +GMG LI +I EE +++ V +++P T
Sbjct: 75 DGLAVLELEDEIDVIVIAGMGGTLIREILEEGKEKL---------KGVERLILQPNIHTY 125
Query: 189 SVHQLMSA 196
+ + +SA
Sbjct: 126 ELREWLSA 133
>gnl|CDD|188685 cd08730, RGS-like_3, Uncharacterized Regulator of G protein
Signaling (RGS) domain subfamily, child 3. These
uncharacterized RGS-like domains consists largely of
hypothetical proteins. The RGS domain is an essential
part of the Regulator of G-protein Signaling (RGS)
protein family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. As a major G-protein
regulator, the RGS domain containing proteins that are
involved in many crucial cellular processes. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play an important role in neuronal signal modulation.
Some RGS proteins are the principal elements needed for
proper vision.
Length = 165
Score = 27.3 bits (60), Expect = 5.9
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 207 DLFKRISDQF---NAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATVEE 263
D F+ + ++ N+ + F + G+DE E S M ++ + YQ +
Sbjct: 46 DFFRSVVTKYLLKNSPYCLPVFKRIESNIGLDESAIMEVMSPMTEMPWQLLVYQMEVLSS 105
Query: 264 DGEFEEDEEPLE 275
D LE
Sbjct: 106 TDTETTDGSTLE 117
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 27.7 bits (62), Expect = 6.5
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 97 GAGNNWAKGHYTEGAELVDSVLDVVRKEAENCD-CLQGFQLTHSLGGGTGSGMGTLLISK 155
GAG N G + + D +RK E D +T +GGGTG+G +++K
Sbjct: 76 GAGGNPEIG-----RKAAEESRDEIRKLLEGADMVF----ITAGMGGGTGTG-AAPVVAK 125
Query: 156 IREE 159
I +E
Sbjct: 126 IAKE 129
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 27.7 bits (61), Expect = 6.5
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 142 GGTGSGMGTLLISKIRE--EFPD--RIMNTYSVVPSPKVSDTVVEP 183
G TGSG TLL + IRE E PD R + TY P V D +
Sbjct: 141 GATGSGKSTLLAAIIRELAEAPDSHRKILTYE-APIEFVYDEIETI 185
>gnl|CDD|131577 TIGR02525, plasmid_TraJ, plasmid transfer ATPase TraJ. Members of
this protein family are predicted ATPases associated
with plasmid transfer loci in bacteria. This family is
most similar to the DotB ATPase of a type-IV
secretion-like system of obligate intracellular
pathogens Legionella pneumophila and Coxiella burnetii
(TIGR02524) [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 372
Score = 27.8 bits (62), Expect = 7.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 140 LGGGTGSGMGTLLISKIR---EEFPDRIMNTY 168
+ G TGSG TL S + E +PDR + TY
Sbjct: 154 ICGETGSGKSTLAASIYQHCGETYPDRKIVTY 185
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 27.5 bits (61), Expect = 8.2
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 226 LHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQ---EATVEEDGEFEEDEEPLEEN 277
++W+ GE +DE +++ + + +Y Y A+ + + + + +EE
Sbjct: 272 VYWFLGEAIDE----DSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDRGE 322
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 27.3 bits (61), Expect = 8.6
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 11/87 (12%)
Query: 17 GAKFWEIISAEHGID----PTGAYH-GDKDNQLERINVYYNEAQGRNV---YVPRAILVD 68
W + E GID TG + +L+ + + + + L +
Sbjct: 64 SRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELLDAEELRE 123
Query: 69 LEPGTMDATRSG---PYGQIFRPDNFV 92
LEPG R G P G P +
Sbjct: 124 LEPGLSPGIRGGLFYPDGGHVDPARLL 150
>gnl|CDD|234011 TIGR02782, TrbB_P, P-type conjugative transfer ATPase TrbB. The
TrbB protein is found in the trb locus of Agrobacterium
Ti plasmids where it is involved in the type IV
secretion system for plasmid conjugative transfer. TrbB
is a homolog of the vir system VirB11 ATPase , and the
Flp pilus sytem ATPase TadA [Cellular processes,
Conjugation].
Length = 299
Score = 27.4 bits (61), Expect = 8.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 142 GGTGSGMGTL---LISKIREEFP-DRI 164
GGTGSG TL L+++I + P DR+
Sbjct: 139 GGTGSGKTTLANALLAEIAKNDPTDRV 165
>gnl|CDD|218871 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 is a
component of the multiprotein exocyst complex. Sec6
interacts with Sec8, Sec10 and Exo70.These exocyst
proteins localise to regions of active exocytosis-at the
growing ends of interphase cells and in the medial
region of cells undergoing cytokinesis-in an
F-actin-dependent and exocytosis- independent manner.
Length = 557
Score = 27.3 bits (61), Expect = 9.4
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 163 RIMNTYSVVPSPKVSDTVVEPYNATLSVH-QLMSATFIGNSTCIQDLF-KRISDQ----F 216
Y+ K V Y ++ + + F+ S L + I +
Sbjct: 318 LKCADYASSLLQKYLPKVSSKYEERITEEFEELLDGFVDLSKECISLLLELIFNDLQPAL 377
Query: 217 NAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQY 256
+ +F +K WYTGE M+++ T + D +++YQ+Y
Sbjct: 378 SKLFTKK----WYTGELMEQIVET-----IEDYLNDYQEY 408
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.399
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,332,419
Number of extensions: 1364075
Number of successful extensions: 1448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1415
Number of HSP's successfully gapped: 63
Length of query: 277
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 181
Effective length of database: 6,679,618
Effective search space: 1209010858
Effective search space used: 1209010858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)