RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17503
(277 letters)
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 362 bits (931), Expect = e-125
Identities = 84/196 (42%), Positives = 120/196 (61%), Gaps = 3/196 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQ--LERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF + HS GGGTGSG +LL+ ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLM 194
VVEPYN+ L+ H +
Sbjct: 180 AVVEPYNSILTTHTTL 195
Score = 125 bits (315), Expect = 3e-33
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
+ + N+T I + + R+ +F+ M+ ++AF+HWY GEGM+E EF+EA +M L +Y
Sbjct: 373 RAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
Query: 254 QQYQEATVEEDGEFEEDE 271
++ +VE +GE E +E
Sbjct: 433 EEVGVDSVEGEGEEEGEE 450
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 359 bits (923), Expect = e-124
Identities = 175/194 (90%), Positives = 186/194 (95%), Gaps = 1/194 (0%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNK-Y 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQLTHSLGGGTGSGMGTLLISKIREE+PDRIMNT+SV+PSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLM 194
VEPYNATLSVHQL+
Sbjct: 180 VEPYNATLSVHQLV 193
Score = 145 bits (368), Expect = 6e-41
Identities = 67/79 (84%), Positives = 73/79 (92%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MS+TFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 363 MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 254 QQYQEATVEEDGEFEEDEE 272
QQYQ+AT +E GEFEE+E
Sbjct: 423 QQYQDATADEQGEFEEEEG 441
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 355 bits (912), Expect = e-122
Identities = 79/195 (40%), Positives = 124/195 (63%), Gaps = 2/195 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAY-HGDKDNQLERINVYYNEAQGRNV 59
+REI+ + GQCGNQI FW + EHG+ G G + V++++ +
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGK- 59
Query: 60 YVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 119
YVPRA+LVDLEPG + G Q+F + V GA NNWA+G+ EG +++D +++
Sbjct: 60 YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMN 119
Query: 120 VVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDT 179
V+ E LQGF +THS+GGG+GSG+G+L++ ++R+ +P + + T+SVVPSP +SD+
Sbjct: 120 VIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDS 179
Query: 180 VVEPYNATLSVHQLM 194
VEPYNA L++ +++
Sbjct: 180 AVEPYNAILTLQRIL 194
Score = 118 bits (298), Expect = 5e-31
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
S + N T I +F+R+ QF+ MF A+ HWY G+ +A + + L
Sbjct: 363 SSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATLAQS- 421
Query: 254 QQYQEAT 260
Y++A+
Sbjct: 422 --YRDAS 426
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 351 bits (902), Expect = e-120
Identities = 78/196 (39%), Positives = 131/196 (66%), Gaps = 5/196 (2%)
Query: 2 REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYV 61
REI+ +Q GQCGNQIG +FW+ + AEHGI P +R +V++ +A + Y+
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEH-YI 61
Query: 62 PRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLD 119
PRA+L+DLEP + + + PY +++ P+N + GAGNNWA G +++G ++ + + D
Sbjct: 62 PRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFD 120
Query: 120 VVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSP-KVSD 178
++ +EA+ D L+GF L HS+ GGTGSG+G+ L+ ++ + +P +++ TYSV P+ ++SD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 179 TVVEPYNATLSVHQLM 194
VV+PYN+ L++ +L
Sbjct: 181 VVVQPYNSLLTLKRLT 196
Score = 126 bits (318), Expect = 1e-33
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
+S + N T I LF+R Q++ + +R+AFL + E M + F E +++ +
Sbjct: 373 VSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLI 432
Query: 254 QQYQEAT--------VEEDGEFEEDEEPLEEN 277
+Y AT +E + + ++ + E
Sbjct: 433 DEYHAATRPDYISWGTQEQVDVDGGQKLISEE 464
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 349 bits (898), Expect = e-119
Identities = 70/196 (35%), Positives = 109/196 (55%), Gaps = 3/196 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQ--GRN 58
+ + V GQ GNQI A FW+ + EHGIDP + ++++
Sbjct: 3 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 62
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
YVPRAI+VDLEP +D ++ G +F P N + GAG N+A G+ G E++ V+
Sbjct: 63 SYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 121
Query: 119 DVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSD 178
+ E + CD + G + H++GGGTGSG G LLI ++E++ + + + +V+PSP+VS
Sbjct: 122 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 181
Query: 179 TVVEPYNATLSVHQLM 194
V EPYN +++ L
Sbjct: 182 VVTEPYNTVFALNTLR 197
Score = 132 bits (333), Expect = 1e-35
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
S + N+T I + RI F+ +++RKAF +WY EGM E + ++ +LV Y
Sbjct: 368 KSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSY 427
Query: 254 QQYQEATVEEDGEFEEDEEPLEE 276
Q +E+ + + + +
Sbjct: 428 QVAEESGAKAKVQDSAGDTGMRA 450
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 43.9 bits (103), Expect = 2e-05
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 6/115 (5%)
Query: 94 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLI 153
G G K ++ + ++ +CD ++ GG GSG+ ++
Sbjct: 56 YAEGCGKERKKA-VGYAQTYYKQIIAQIMEKFSSCD---IVIFVATMAGGAGSGITPPIL 111
Query: 154 SKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDL 208
++ +P++ V PK ++ + E NA + +M +T G I L
Sbjct: 112 GLAKQMYPNKH--FGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEGKDISIYLL 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 3e-05
Identities = 38/297 (12%), Positives = 76/297 (25%), Gaps = 107/297 (36%)
Query: 13 GNQIGAKF------------WEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
++ KF I E P+ +E+ + YN+ Q V+
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSM----MTRMYIEQRDRLYNDNQ---VF 126
Query: 61 VPRAILVDLEPGTMDATRSGPYGQI------FRPDNFVF--GQSGAGNNWAKGHYTEGAE 112
+ +R PY ++ RP V G G+G K
Sbjct: 127 AKYNV-----------SRLQPYLKLRQALLELRPAKNVLIDGVLGSG----K-------- 163
Query: 113 LVDSVL--DVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRI--MNTY 168
+ + DV K++ + +I +N
Sbjct: 164 ---TWVALDVCLSY------------------------------KVQCKMDFKIFWLN-- 188
Query: 169 SVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLH- 227
+ + +TV+E L + +S+ I+ I + + + K + +
Sbjct: 189 --LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 228 -------WYTGEGMDEMEF------TEAESNMIDLVSEYQQYQEATVEEDGEFEEDE 271
+ + T + D +S + DE
Sbjct: 247 LLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Score = 33.7 bits (76), Expect = 0.064
Identities = 28/228 (12%), Positives = 71/228 (31%), Gaps = 71/228 (31%)
Query: 100 NNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQL--------THSLGGGTGSGMGTL 151
+NW + + +++S L+V+ + AE + T L L
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLS---------L 394
Query: 152 LISKIREEFPDRIMN---TYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDL 208
+ + + ++N YS+V +P +T+S+ + + L
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEK--------QPKESTISIPSIYLELKVKLEN-EYAL 445
Query: 209 FKRISDQFNAMFRRKA------------FLHWYTGEGMDEMEFTE--------------- 241
+ I D +N + + + + G + +E E
Sbjct: 446 HRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 242 ------------AESNMIDLVSEYQQYQEATVEEDGEFEEDEEPLEEN 277
A ++++ + + + Y+ + D ++E + +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Score = 31.4 bits (70), Expect = 0.38
Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 30/149 (20%)
Query: 152 LISKIREEF--PDRIMNTYSVVPSPKVSDT-VVEPYNAT---------LSVHQLMSATFI 199
L+S I+ E P + Y +D V YN + ++ +L A +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 200 --------GNSTCIQD--LFKRISDQFNAMFRRKAFLHWYT-GEGMDEMEFTEAESNMI- 247
G + D L ++ + + F+ + W E ++
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMD--FK----IFWLNLKNCNSPETVLEMLQKLLY 207
Query: 248 DLVSEYQQYQEATVEEDGEFEEDEEPLEE 276
+ + + + + L
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Score = 29.4 bits (65), Expect = 1.8
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 34/112 (30%)
Query: 35 AYHGDKDNQLERIN----VYYN----EAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIF 86
+H ER+ V+ + E + R+ + PY I
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--IC 535
Query: 87 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENC------DCLQ 132
D Y LV+++LD + K EN D L+
Sbjct: 536 DNDP---------------KYE---RLVNAILDFLPKIEENLICSKYTDLLR 569
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 28/202 (13%), Positives = 57/202 (28%), Gaps = 75/202 (37%)
Query: 25 SAEHGID-PT------GAYHGDKDNQLERINVYYNEAQ--------GRNVYV----PRAI 65
S E+ P+ + + + N + + G V P++
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS- 385
Query: 66 LVDLE--------PGTMDATRSGPYGQ-----------IFRP------------------ 88
L L P +D +R P+ + + P
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 89 -DNFVFGQS---------GAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTH 138
+N F G++ + + ++D + + + F+ TH
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRV----LSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 139 SL--GGGTGSGMGTLLISKIRE 158
L G G SG+G L + ++
Sbjct: 501 ILDFGPGGASGLGV-LTHRNKD 521
Score = 31.9 bits (72), Expect = 0.26
Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 20/68 (29%)
Query: 21 WEII---SAEHGID--PTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMD 75
WE A H +D P G G L N G V R I+ GT+D
Sbjct: 490 WETTTQFKATHILDFGP-GGASGLGV--LTHRNK-----DGTGV---RVIVA----GTLD 534
Query: 76 ATRSGPYG 83
YG
Sbjct: 535 INPDDDYG 542
Score = 31.6 bits (71), Expect = 0.38
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 216 FNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATVEED--GEFEE 269
F A ++ F E + + + +LV ++ Y + VE G+F++
Sbjct: 28 FIASQLQEQFNKILP-EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Score = 28.1 bits (62), Expect = 4.7
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 41/157 (26%)
Query: 115 DSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTY------ 168
D VL++ E EN L+G + H+L T L+ ++ Y
Sbjct: 81 DQVLNLCLTEFEN-CYLEGNDI-HALAAKLLQENDTTLVKT------KELIKNYITARIM 132
Query: 169 SVVPSPKVSDTVVEPYNATLSVHQLMSATFI------GNS---------------TCIQD 207
+ P K S+ +A +A + GN+ + D
Sbjct: 133 AKRPFDKKSN------SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 208 LFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAES 244
L K ++ + + R +G++ +E+ E S
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 32.4 bits (73), Expect = 0.17
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 97 GAGNNWAKGHYTEGAEL-VDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISK 155
GA N G E + + V++E E+ D + + +T LGGGTG+G I
Sbjct: 82 GAARNPQVGE--EAFVKHETKIFEAVKQEFEDRDFI--W-ITCGLGGGTGTGALLKAIEM 136
Query: 156 IREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMS 195
+ E N ++ P+ ++ + NAT + +
Sbjct: 137 LYEHD----YNFGLLLTLPRDAEALKVLENATSRIRSIAM 172
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 0.48
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 113 LVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVP 172
+ S + + + + G +GSGMG + S +R F DR
Sbjct: 1024 FIASGITDPYEMYKYVHVSEV-------GNCSGSGMGGV--SALRGMFKDRFK------D 1068
Query: 173 SPKVSDTVVEPYNATLSVHQLMSAT-FIGNSTCI 205
P +D + E + T+S M G
Sbjct: 1069 EPVQNDILQESFINTMSAWVNMLLISSSGPIKTP 1102
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 30.6 bits (68), Expect = 0.50
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 94 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLI 153
G GAG N LV + + D + +SLGGG+GS +G L+
Sbjct: 52 GTRGAGGNRKVI-----LPLVRPQIPALMDTIPEADFYI---VCYSLGGGSGSVLGPLIT 103
Query: 154 SKIREEFPDRIMNTYSVVPS 173
++ + + + S
Sbjct: 104 GQLADRKASFVSFVVGAMES 123
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 30.7 bits (68), Expect = 0.58
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 134 FQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLS 189
F + GGG G+G G+L++ IRE+F ++ P + LS
Sbjct: 151 FLICLGAGGGVGTGWGSLVLQLIREQFFP--CPVSMLISLPSGDPDEINNALVLLS 204
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Length = 33
Score = 27.0 bits (59), Expect = 0.89
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 209 FKRISDQFNAMFRRKAFLHWY 229
+RI D+FN + R+ F + Y
Sbjct: 12 LRRIGDEFNETYTRRVFANDY 32
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, MGA family; 2.31A
{Enterococcus faecalis}
Length = 485
Score = 27.6 bits (61), Expect = 5.6
Identities = 2/22 (9%), Positives = 5/22 (22%)
Query: 143 GTGSGMGTLLISKIREEFPDRI 164
L ++ R+
Sbjct: 406 QGEPAWKAFLQQELAAYLGTRV 427
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 27.3 bits (60), Expect = 5.7
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 111 AELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIR 157
E +++ ++ EN + + + S GG + + +KI+
Sbjct: 56 DEYSKPLIETLKSLPENEEVIL---VGFSFGGINIALAADIFPAKIK 99
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 27.3 bits (61), Expect = 6.2
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 63 RAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWA 103
RA+L+DL G A PY G+ WA
Sbjct: 18 RAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWA 58
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 26.9 bits (59), Expect = 6.5
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 111 AELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIR 157
++ + +++ + N + + H+LGG S KI
Sbjct: 64 SDYLSPLMEFMASLPANEKIIL---VGHALGGLAISKAMETFPEKIS 107
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 8.4
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 235 DEMEFTEAESNMIDLVSEYQQYQEATVEE-DGEFEEDEEPLEE 276
D + E ES + ++++ Q ++E D + E+ E
Sbjct: 78 DRLT-QEPES-----IRKWREEQRKRLQELDAASKVMEQEWRE 114
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 27.1 bits (59), Expect = 8.6
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 49 VYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPD-NFVFGQSGAGNNWAKGHY 107
+ +A + V+ + GP I D V G++ K Y
Sbjct: 121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK-GY 179
Query: 108 TEGA 111
G
Sbjct: 180 RGGT 183
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 27.1 bits (59), Expect = 8.8
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 41 DNQLERINVYYNEAQGRNVYV------PRAILVDLEPGTMDATRSGPYGQIFRPDN 90
D RI V + Q R V V PRA+ +D G M T G +I R
Sbjct: 98 DTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.399
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,410,772
Number of extensions: 264586
Number of successful extensions: 669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 43
Length of query: 277
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,133,061
Effective search space: 764616285
Effective search space used: 764616285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)