RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17503
(277 letters)
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 296 bits (760), Expect = e-102
Identities = 179/217 (82%), Positives = 194/217 (89%), Gaps = 4/217 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G Y
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNK-Y 59
Query: 61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTV 180
VRKE+E+CDCLQGFQLTHSLGGGTGSGMGTLLISKIREE+PDRIMNT+SVVPSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMS---ATFIGNSTCIQDLFKRISD 214
VEPYNATLSVHQL+ T+ ++ + D+ R
Sbjct: 180 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLK 216
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 273 bits (698), Expect = 5e-93
Identities = 84/196 (42%), Positives = 120/196 (61%), Gaps = 3/196 (1%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQL--ERINVYYNEAQGRN 58
MRE + + GQ G QIG WE+ EHGI P G DK + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
+VPRA+ VDLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119
Query: 119 DVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSD 178
D +RK A+ C LQGF + HS GGGTGSG +LL+ ++ ++ + +S+ P+P+VS
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 179 TVVEPYNATLSVHQLM 194
VVEPYN+ L+ H +
Sbjct: 180 AVVEPYNSILTTHTTL 195
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 250 bits (639), Expect = 4e-84
Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 6/219 (2%)
Query: 1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQ--GRN 58
+ + V GQ GNQI A FW+ + EHGIDP + ++++
Sbjct: 1 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 60
Query: 59 VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
YVPRAI+VDLEP +D ++ G +F P N + GAG N+A G+ G E++ V+
Sbjct: 61 SYVPRAIMVDLEPSVIDNVKA-TSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 119
Query: 119 DVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSD 178
+ E + CD + G + H++GGGTGSG G LLI ++E++ + + + +V+PSP+VS
Sbjct: 120 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 179
Query: 179 TVVEPYNATLSVHQLM---SATFIGNSTCIQDLFKRISD 214
V EPYN +++ L A I ++ + DL R +
Sbjct: 180 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWN 218
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 118 bits (296), Expect = 2e-33
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 194 MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEY 253
MSATFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLVSEY
Sbjct: 120 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 179
Query: 254 QQYQE 258
QQYQ+
Sbjct: 180 QQYQD 184
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 117 bits (293), Expect = 6e-33
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 183 PYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEA 242
Y + S + N+T I + RI F+ +++RKAF +WY EGM E +
Sbjct: 105 GYVEQPGISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVL 164
Query: 243 ESNMIDLVSEYQQYQE 258
++ +LV YQ +E
Sbjct: 165 RASAQELVQSYQVAEE 180
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 113 bits (283), Expect = 2e-31
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 164 IMNTYSVVPSPKVSDTVVEPYNATLSV--HQLMSATFIGNSTCIQDLFKRISDQFNAMFR 221
I KV P + + N+T I + + R+ +F+ M+
Sbjct: 96 IQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 155
Query: 222 RKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATV 261
++AF+HWY GEGM+E EF+EA +M L +Y++ +V
Sbjct: 156 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 195
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 26.8 bits (59), Expect = 1.6
Identities = 6/66 (9%), Positives = 15/66 (22%), Gaps = 4/66 (6%)
Query: 186 ATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESN 245
A LSV ++ + S + + Y
Sbjct: 16 ALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVK----KT 71
Query: 246 MIDLVS 251
+ ++ +
Sbjct: 72 LYEIPA 77
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 27.2 bits (60), Expect = 1.6
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 103 AKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPD 162
A + G + + + + E D +T +GGGTG+G ++ +E
Sbjct: 61 AGANPEVGRQAALEDRERISEVLEGADM---VFITTGMGGGTGTGAAPIIAEVAKE---- 113
Query: 163 RIMNTYSVVPSPKVSDTVVEPYNATLSVHQLM 194
+ T +VV P + A + L
Sbjct: 114 MGILTVAVVTRPFPFEGRKRMQIADEGIRALA 145
>d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger
[TaxId: 5061]}
Length = 261
Score = 26.3 bits (57), Expect = 3.7
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 6/113 (5%)
Query: 86 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTG 145
+ F G+Y + D V +V+++A HSLG
Sbjct: 80 YTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHSLGA--- 136
Query: 146 SGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATF 198
M L +++ + + + T+ + N V + +
Sbjct: 137 -SMAALTAAQLSATYDNVRLYTFG--EPRSGNQAFASYMNDAFQVSSPETTQY 186
>gi|115385463|ref|XP_001209278.1|(7-278:285) hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624]
gi|114187725|gb|EAU29425.1| hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624] E=1e-100
s/c=1.35 id=66% cov=100%
Length = 272
Score = 25.8 bits (56), Expect = 6.6
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 104 KGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLT---HSLGGGTGSGMGTLLISKIREE- 159
G +T + DSV+ +++ ++L HSLG + TL + +R +
Sbjct: 110 LGFWTSWTNVRDSVMKHLKETMAANP---DYELVVVGHSLGAA----VATLAAADLRTKG 162
Query: 160 FPDRIMNTYSVVPSPKVSD 178
+P ++ SP+V++
Sbjct: 163 YPSATFYAFA---SPRVAN 178
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 25.2 bits (55), Expect = 7.2
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 103 AKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPD 162
A G + + D + + D +T GGGTG+G G +++ I +
Sbjct: 61 AGADPEVGRKAAEDAKDEIEELLRGADM---VFVTAGEGGGTGTG-GAPVVASIARKLG- 115
Query: 163 RIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFN 217
T VV P + A + L + T I R+ +
Sbjct: 116 --ALTVGVVTRPFSFEGKRRSNQAENGIAALRES----CDTLIVIPNDRLLQMGD 164
Score = 25.2 bits (55), Expect = 8.4
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 92 VFGQSGAGNNWAKGHYTEGAELVDSVL------DVVRKEAENCDCLQGFQLTHSLGGGTG 145
V G G G N +G + V+ + ++ +A+ G T LG G
Sbjct: 6 VVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVK-LDVGRDSTRGLGAGAD 64
Query: 146 SGMGTLLISKIREEFPDRIMNTYSVV 171
+G ++E + ++ +V
Sbjct: 65 PEVGRKAAEDAKDEI-EELLRGADMV 89
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 24.9 bits (54), Expect = 9.1
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 92 VFGQSGAGNNWAKGHYTEGAELVDSVL-----DVVRKEAENCDCLQGFQLTHSLGGGTGS 146
V G GAGNN EG E +V + + + L G +LT LG G
Sbjct: 20 VVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNP 79
Query: 147 GMGTLLISKIREEFPDRIMNT 167
+G + EE I ++
Sbjct: 80 KIGEEAAKESAEEIKAAIQDS 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.399
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,069,492
Number of extensions: 48728
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 18
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)