BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17504
(196 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357622661|gb|EHJ74087.1| apterous [Danaus plexippus]
Length = 359
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/202 (60%), Positives = 149/202 (73%), Gaps = 14/202 (6%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC-- 59
GI+++ELVMRARD+VFHL CFTC++CG LL+KGD+FGMR+ ++YCRPHY+ + D+C
Sbjct: 86 GITANELVMRARDMVFHLTCFTCVACGTLLSKGDVFGMRNSLVYCRPHYDSVCMDDFCEE 145
Query: 60 --GSAEIEQPMSPR---PAPWQPTTV-QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
S Q ++ P + P V QKGRPRKRK++ P ED+ MR+ ST
Sbjct: 146 DVNSVYRCQELNSEGDSPNQYFPVGVNQKGRPRKRKIA----HGPHEDMQVQTMRMASTA 201
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
L++LH DLSSSMESL+Y+S +SPGS QRTKRMRTSFKHHQLRTMKSYF INQ
Sbjct: 202 LDILHRADLSSSMESLAYDSSV--ASPGSVSSHTQRTKRMRTSFKHHQLRTMKSYFAINQ 259
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 260 NPDAKDLKQLAQKTGLSKRVLQ 281
>gi|380690603|gb|AFD93370.1| apterous, partial [Cydia pomonella]
Length = 231
Score = 232 bits (591), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/198 (64%), Positives = 148/198 (74%), Gaps = 18/198 (9%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI+++ELVMRARD V+HL CF+C +CG LL+KGD+FGMRD ++YCRPHYE D S
Sbjct: 47 GITANELVMRARDAVYHLTCFSCAACGSLLSKGDVFGMRDNLVYCRPHYEQEYDDD---S 103
Query: 62 AEIEQPMSPRPAPWQ----PTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEML 117
Q M +P Q P+ QKGRPRKRKL+ SP +D+ MR+ ST LE+L
Sbjct: 104 VYRCQEMDSEGSPSQFYGGPS--QKGRPRKRKLA-QSP----DDMQVQTMRMASTALEIL 156
Query: 118 HSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
H GDLSSSMESL+Y+SGA +SPGS S RTKRMRTSFKHHQLRTMKSYF +NQNPDA
Sbjct: 157 HRGDLSSSMESLAYDSGA--ASPGS--VSSTRTKRMRTSFKHHQLRTMKSYFAVNQNPDA 212
Query: 178 KDLKQLAQKTGLSKRVLQ 195
KDLKQLAQKTGLSKRVLQ
Sbjct: 213 KDLKQLAQKTGLSKRVLQ 230
>gi|328925124|dbj|BAK19077.1| apterous B alpha [Bombyx mori]
Length = 349
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/202 (60%), Positives = 148/202 (73%), Gaps = 15/202 (7%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI+++ELVMRARDLV+HL+CFTC++CG L+KGD+FGM+ ++YCRPHY+ DYC
Sbjct: 86 GITANELVMRARDLVYHLNCFTCVACGTQLSKGDVFGMKGGLVYCRPHYDTACLDDYCDE 145
Query: 62 AEIE----QPM---SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
Q M P + + KGRPRKRK+ SP +++ A +R+ S+ L
Sbjct: 146 EMTNGYRCQDMHNGGNSPQYYSGGSTPKGRPRKRKIPHGSP----DELQAQTIRMASSAL 201
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQ 173
E+LH GDLSSSMESL+Y+S +SPGS V SH QRTKRMRTSFKHHQLRTMKSYF INQ
Sbjct: 202 EILHRGDLSSSMESLAYDSSV--ASPGS-VSSHTQRTKRMRTSFKHHQLRTMKSYFAINQ 258
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 259 NPDAKDLKQLAQKTGLSKRVLQ 280
>gi|225543484|ref|NP_001139388.1| apterous [Tribolium castaneum]
gi|224459214|gb|ACN43342.1| apterous b [Tribolium castaneum]
Length = 361
Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/204 (60%), Positives = 145/204 (71%), Gaps = 21/204 (10%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS++ELVMRARD V+HLHCF+C SCG+ L+KGD FGMRD +IYCRPHYE+L D+C +
Sbjct: 98 GISANELVMRARDSVYHLHCFSCTSCGMPLSKGDHFGMRDGLIYCRPHYELL---DFCDT 154
Query: 62 AEIEQPM---SPRPAPWQPTTV---QKGRPRKRKLSVDSPTPPSEDINAN----VMRIPS 111
++ + M S P + KGRPRKRKL P ED MR+ +
Sbjct: 155 SDPVEMMFRGSESPPGYFANAAPQHHKGRPRKRKL-------PVEDRGCGEIPVTMRMAA 207
Query: 112 TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNI 171
TLEML GDLSSSMESLSY+S + + +G H QRTKRMRTSFKHHQLRTMK+YF I
Sbjct: 208 ATLEMLQQGDLSSSMESLSYDSSVTSPASSNG-HQPQRTKRMRTSFKHHQLRTMKTYFAI 266
Query: 172 NQNPDAKDLKQLAQKTGLSKRVLQ 195
NQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 267 NQNPDAKDLKQLAQKTGLSKRVLQ 290
>gi|328787166|ref|XP_003250891.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis mellifera]
Length = 390
Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/212 (60%), Positives = 148/212 (69%), Gaps = 28/212 (13%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR-HRDYCG 60
GIS++ELVMRARDLV+H+ CFTC SCG L KGD FG RD ++YCRPHYE+L DY G
Sbjct: 105 GISATELVMRARDLVYHVACFTCASCGTPLNKGDYFGQRDGLVYCRPHYELLCCAGDYGG 164
Query: 61 SA----EIEQP-MSPRPAPWQPT---------TVQKGRPRKRKLS--VDSPTPPSEDINA 104
+A +I P +SP PA + TVQKGRPRKRKLS S P +
Sbjct: 165 AATSIEDIGSPGVSPLPAYYSAAEQSPITSSGTVQKGRPRKRKLSEVTGSELPVT----- 219
Query: 105 NVMRIPSTTLEMLHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLR 163
MR+ + LE+LH +LSSSMESL+ YE+ G+ P VH QRTKRMRTSFKHHQLR
Sbjct: 220 --MRLAAGALELLHPTELSSSMESLAAYEASVGSPGP---VHQSQRTKRMRTSFKHHQLR 274
Query: 164 TMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TMK+YF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 275 TMKNYFAINQNPDAKDLKQLAQKTGLSKRVLQ 306
>gi|383850874|ref|XP_003700999.1| PREDICTED: LIM/homeobox protein Lhx9-like [Megachile rotundata]
Length = 391
Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/212 (60%), Positives = 146/212 (68%), Gaps = 28/212 (13%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS+SELVMRARDLV+H+ CFTC SCG L KGD FG RD ++YCRPHYE+L GS
Sbjct: 106 GISASELVMRARDLVYHVACFTCASCGTPLNKGDHFGQRDGLVYCRPHYELLCCAGDYGS 165
Query: 62 A-----EIEQP-MSPRPAPWQPT---------TVQKGRPRKRKLS--VDSPTPPSEDINA 104
A +I P +SP PA + TVQKGRPRKRKLS S P +
Sbjct: 166 AASNIEDIGSPGVSPLPAYYSAAEQSPIATSGTVQKGRPRKRKLSEVTGSELPVT----- 220
Query: 105 NVMRIPSTTLEMLHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLR 163
MR+ + LE+LH +LSSSMESL+ YE+ G+ P VH QRTKRMRTSFKHHQLR
Sbjct: 221 --MRLAAGALELLHPTELSSSMESLAAYEASVGSPGP---VHQSQRTKRMRTSFKHHQLR 275
Query: 164 TMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TMK+YF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 276 TMKNYFAINQNPDAKDLKQLAQKTGLSKRVLQ 307
>gi|380027052|ref|XP_003697250.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis florea]
Length = 390
Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 128/210 (60%), Positives = 149/210 (70%), Gaps = 24/210 (11%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR-HRDYCG 60
GIS++ELVMRARDLV+H+ CFTC SCG L KGD FG RD ++YCRPHYE+L DY G
Sbjct: 105 GISATELVMRARDLVYHVACFTCASCGTPLNKGDHFGQRDGLVYCRPHYELLCCAGDYGG 164
Query: 61 SA----EIEQP-MSPRPAPWQ-----PTT----VQKGRPRKRKLSVDSPTPPSEDINANV 106
+A +I P +SP PA + P T VQKGRPRKRKLS + D+
Sbjct: 165 AATSIEDIGSPGVSPLPAYYSAAEQSPITSSGAVQKGRPRKRKLSEVT----GSDLPV-T 219
Query: 107 MRIPSTTLEMLHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTM 165
MR+ + LE+LH +LSSSMESL+ YE+ G+ P VH QRTKRMRTSFKHHQLRTM
Sbjct: 220 MRLAAGALELLHPTELSSSMESLAAYEASVGSPGP---VHQSQRTKRMRTSFKHHQLRTM 276
Query: 166 KSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
K+YF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 277 KNYFAINQNPDAKDLKQLAQKTGLSKRVLQ 306
>gi|242023961|ref|XP_002432399.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
gi|212517822|gb|EEB19661.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
Length = 383
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/202 (58%), Positives = 141/202 (69%), Gaps = 16/202 (7%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE-ILRHRDYCG 60
GIS+SELVMRA+D+VFH++CFTC SCGI L+KGD FGMR+ ++YC PHYE + H YC
Sbjct: 99 GISASELVMRAKDMVFHINCFTCTSCGIPLSKGDHFGMRNGLVYCHPHYEHLCSHDPYCN 158
Query: 61 SAEIEQPMSPRPAPWQPTT-------VQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
+ PA + T VQKGRPRKRKL + P D+N + +R+ + T
Sbjct: 159 DLDNVFRAGGSPADFYNTGNDRISGGVQKGRPRKRKLQTPIDSSPGSDLNVS-LRLSTAT 217
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
LEMLH +LSSSM+S+SY+ V S Q TKRMRTSFKHHQLRTMKSYF INQ
Sbjct: 218 LEMLHPNELSSSMDSISYDGPLT-------VPSQQSTKRMRTSFKHHQLRTMKSYFAINQ 270
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 271 NPDAKDLKQLAQKTGLSKRVLQ 292
>gi|350404759|ref|XP_003487211.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus impatiens]
Length = 441
Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/212 (59%), Positives = 145/212 (68%), Gaps = 28/212 (13%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI ++ELVMRARDLV+H+ CFTC SCG L KGD FG RD ++YCRPHYE+L GS
Sbjct: 156 GIFATELVMRARDLVYHVACFTCASCGTPLNKGDHFGQRDGLVYCRPHYELLCCAGDYGS 215
Query: 62 A-----EIEQP-MSPRPAPWQPT---------TVQKGRPRKRKLS--VDSPTPPSEDINA 104
A +I P +SP PA + TVQKGRPRKRKLS S P +
Sbjct: 216 AASNIEDIGSPGVSPLPAYYSAAEQSPITSSGTVQKGRPRKRKLSEVTGSELPVT----- 270
Query: 105 NVMRIPSTTLEMLHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLR 163
MR+ + LE+LH +LSSSMESL+ YE+ G+ P VH QRTKRMRTSFKHHQLR
Sbjct: 271 --MRLAAGALELLHPTELSSSMESLAAYEASVGSPGP---VHQSQRTKRMRTSFKHHQLR 325
Query: 164 TMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TMK+YF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 326 TMKNYFAINQNPDAKDLKQLAQKTGLSKRVLQ 357
>gi|340721020|ref|XP_003398925.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus terrestris]
Length = 391
Score = 219 bits (557), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/212 (59%), Positives = 145/212 (68%), Gaps = 28/212 (13%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI ++ELVMRARDLV+H+ CFTC SCG L KGD FG RD ++YCRPHYE+L GS
Sbjct: 106 GIFATELVMRARDLVYHVACFTCASCGTPLNKGDHFGQRDGLVYCRPHYELLCCAGDYGS 165
Query: 62 A-----EIEQP-MSPRPAPWQPT---------TVQKGRPRKRKLS--VDSPTPPSEDINA 104
A +I P +SP PA + TVQKGRPRKRKLS S P +
Sbjct: 166 AASNIEDIGSPGVSPLPAYYSAAEQSPITSSGTVQKGRPRKRKLSEVTGSELPVT----- 220
Query: 105 NVMRIPSTTLEMLHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLR 163
MR+ + LE+LH +LSSSMESL+ YE+ G+ P VH QRTKRMRTSFKHHQLR
Sbjct: 221 --MRLAAGALELLHPTELSSSMESLAAYEASVGSPGP---VHQSQRTKRMRTSFKHHQLR 275
Query: 164 TMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TMK+YF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 276 TMKNYFAINQNPDAKDLKQLAQKTGLSKRVLQ 307
>gi|307166312|gb|EFN60494.1| LIM/homeobox protein Lhx9 [Camponotus floridanus]
Length = 487
Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 123/209 (58%), Positives = 145/209 (69%), Gaps = 25/209 (11%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL--RHRDYC 59
GIS+SELVMRARDLV+H+ CFTC SCG L KGD FG R+ ++YCRPHYE+L
Sbjct: 205 GISASELVMRARDLVYHVACFTCASCGTPLNKGDHFGQRNGLVYCRPHYELLCCAGDYGG 264
Query: 60 GSAEIEQ----PMSPRPAPWQPT------TVQKGRPRKRKLS--VDSPTPPSEDINANVM 107
+ IE +SP PA ++ + TVQKGRPRKRKLS S P + M
Sbjct: 265 AAGGIEDLGSPGVSPLPAYYEQSPIATSGTVQKGRPRKRKLSEVAGSELPVT-------M 317
Query: 108 RIPSTTLEMLHSGDLSSSMESL-SYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMK 166
R+ + LE+LH +LSSSMESL +Y++ G+ P VH QRTKRMRTSFKHHQLRTMK
Sbjct: 318 RLAAGALELLHPTELSSSMESLTAYDASVGSPGP---VHQSQRTKRMRTSFKHHQLRTMK 374
Query: 167 SYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+YF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 375 NYFAINQNPDAKDLKQLAQKTGLSKRVLQ 403
>gi|345487079|ref|XP_001599685.2| PREDICTED: LIM/homeobox protein Lhx9-like [Nasonia vitripennis]
Length = 406
Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 127/214 (59%), Positives = 145/214 (67%), Gaps = 29/214 (13%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE-ILRHRDY-- 58
GIS++ELVMRARDLV+H+ CFTC SCG L KGD FG RD ++YCRPHYE I DY
Sbjct: 114 GISATELVMRARDLVYHVACFTCASCGTPLNKGDHFGQRDGLVYCRPHYELICCATDYGS 173
Query: 59 -CGSAE-IEQP-MSPRPAPWQPT-----------TVQKGRPRKRKLS--VDSPTPPSEDI 102
GS E + P +SP P + QKGRPRKRKLS S P +
Sbjct: 174 TSGSVEDLGSPGVSPLPGYYSAAEQSPIAAGGGGGAQKGRPRKRKLSEVTGSELPVT--- 230
Query: 103 NANVMRIPSTTLEMLHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQ 161
MR+ + LE+LH +LSSSMESL+ Y++ G SPG VH +QRTKRMRTSFKHHQ
Sbjct: 231 ----MRLAAGALELLHPTELSSSMESLAAYDASVG--SPGGPVHQNQRTKRMRTSFKHHQ 284
Query: 162 LRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
LRTMKSYF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 285 LRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQ 318
>gi|307196006|gb|EFN77731.1| LIM/homeobox protein Lhx9 [Harpegnathos saltator]
Length = 433
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/209 (58%), Positives = 146/209 (69%), Gaps = 19/209 (9%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR-HRDYCG 60
GIS+SELVMRAR+LV+H+ CFTC SCG L KGD FG RD ++YCRPHYE+L DY G
Sbjct: 126 GISASELVMRARELVYHVACFTCASCGTPLNKGDHFGQRDGLVYCRPHYELLCCAGDYGG 185
Query: 61 SA----EIEQP-MSPRPAPWQPT------TVQKGRPRKRKLS--VDSPTPPSEDINANVM 107
+A ++ P +SP PA ++ TVQKGRPRKRKLS S P + + A +
Sbjct: 186 AAGSIEDLGSPGVSPLPAYYEQNPIASSGTVQKGRPRKRKLSEVTGSEFPVTMRLAAGAL 245
Query: 108 RIPSTTLEMLHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMK 166
E+L +LSSSMESL+ Y++ G+ P VH QRTKRMRTSFKHHQLRTMK
Sbjct: 246 -AEVAIAELLQPTELSSSMESLAAYDTSVGSPGP---VHQSQRTKRMRTSFKHHQLRTMK 301
Query: 167 SYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+YF +NQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 302 TYFALNQNPDAKDLKQLAQKTGLSKRVLQ 330
>gi|193575711|ref|XP_001949543.1| PREDICTED: LIM/homeobox protein Lhx2-like [Acyrthosiphon pisum]
Length = 356
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/212 (55%), Positives = 146/212 (68%), Gaps = 21/212 (9%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI + +LVMRA+DLV+H+ CF C +CG +L KGD +G+RD ++CRP YE L+HRD +
Sbjct: 91 GIGACDLVMRAKDLVYHVECFACYACGAVLCKGDYYGVRDGAVFCRPDYERLKHRDM--A 148
Query: 62 AEIEQPMS--PRPAPWQPTTVQKGRPRK-RKLSVDSPTPPSEDINA----NVMRIPSTTL 114
++E PM PR A + KGRPRK R + + S + D N NV+RIP +TL
Sbjct: 149 CDLE-PMCSPPRAAGHHWPSAHKGRPRKKRNVQMLSSPMTTADCNGLTELNVLRIPQSTL 207
Query: 115 EMLHSGDLSSSMESLSYESGAG---------NSSPGSGVHSHQ--RTKRMRTSFKHHQLR 163
E++ + DLSSSMESL+YE+ + ++ G HQ RTKRMRTSFKHHQLR
Sbjct: 208 EVMQATDLSSSMESLTYETSSLSSPTNSSTMGTTGGMSQQQHQQTRTKRMRTSFKHHQLR 267
Query: 164 TMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 268 TMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 299
>gi|332018689|gb|EGI59261.1| LIM/homeobox protein Lhx9 [Acromyrmex echinatior]
Length = 274
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 141/200 (70%), Gaps = 24/200 (12%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR-HRDYCGSA----EI 64
MRARDLV+H+ CFTC SCG L KGD FG RD ++YCRPHYE+L DY G+A ++
Sbjct: 1 MRARDLVYHVACFTCASCGTPLNKGDHFGQRDGLVYCRPHYELLCCAGDYGGAAGSIEDL 60
Query: 65 EQP-MSPRPA-----PWQPTTVQKGRPRKRKLS--VDSPTPPSEDINANVMRIPSTTLEM 116
P +SP PA P TVQKGRPRKRKLS S P + MR+ + LE+
Sbjct: 61 GSPGVSPLPAYYEQSPITSGTVQKGRPRKRKLSEVTGSELPVT-------MRLAAGALEL 113
Query: 117 LHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
LH +LSSSMESL+ Y++ G+ P VH +QRTKRMRTSFKHHQLRTMK+YF INQNP
Sbjct: 114 LHPTELSSSMESLAAYDASVGSPGP---VHQNQRTKRMRTSFKHHQLRTMKNYFAINQNP 170
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGLSKRVLQ
Sbjct: 171 DAKDLKQLAQKTGLSKRVLQ 190
>gi|23893429|emb|CAD12364.1| apterous-2 [Cupiennius salei]
Length = 217
Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 130/217 (59%), Gaps = 38/217 (17%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI ++ELVMRARDLV+HLHCFTC C LT+GD FG+RD ++YCR HYE++ H + G
Sbjct: 14 GIFANELVMRARDLVYHLHCFTCAWCNTALTQGDYFGLRDNLVYCRAHYELMMHGENFGV 73
Query: 62 AEIEQPMSPR-----------------------PAPWQPTTVQKGRPRKRKLSVDSPTPP 98
+P+ PR P P V+KGRPRKRK + D+
Sbjct: 74 NG--EPLLPRYPGVTLIHPNHDPASSPSTGAFTPFPGVTGAVRKGRPRKRK-TTDAVV-- 128
Query: 99 SEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFK 158
E + + + + S LH SS++S S SG N S QRTKRMRTSFK
Sbjct: 129 GEGLLSQTLMMESPDGCNLHL----SSLDSNSGPSGGLNPS------GPQRTKRMRTSFK 178
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF INQNPDAKDLKQLA KTGLSKRVLQ
Sbjct: 179 HHQLRTMKSYFAINQNPDAKDLKQLASKTGLSKRVLQ 215
>gi|348535176|ref|XP_003455077.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oreochromis niloticus]
Length = 417
Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 125/206 (60%), Gaps = 36/206 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 141 LGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDSLVYCRLHFETLIQGEYET 200
Query: 59 -CGSAEIEQPMSPRPAPW-------QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
A++ Q PA TVQKGRPRKRK SP P +E
Sbjct: 201 HFNHADVVQHKGLGPANTLGLSYFSSVGTVQKGRPRKRK----SPGPGAE---------- 246
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYF 169
L++ +LS G S S S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 247 -----------LAAYNAALSCNENDGESMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYF 295
Query: 170 NINQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 296 AINHNPDAKDLKQLAQKTGLTKRVLQ 321
>gi|432876050|ref|XP_004072952.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oryzias latipes]
Length = 380
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 125/206 (60%), Gaps = 36/206 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +CG +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 141 LGISASEMVMRARDLVYHLNCFTCTTCGKMLTTGDHFGMKDSLVYCRLHFETLIQGEYQT 200
Query: 59 -CGSAEIEQPMSPRPAPWQPT-------TVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
A+I PA TVQKGRPRKRK SP P +E
Sbjct: 201 NFNHADIVPHKGLGPANTLGLSYFNGLGTVQKGRPRKRK----SPGPGAE---------- 246
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYF 169
L++ +LS G S S S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 247 -----------LAAYNAALSCNENDGESMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYF 295
Query: 170 NINQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 296 AINHNPDAKDLKQLAQKTGLTKRVLQ 321
>gi|449268595|gb|EMC79451.1| LIM/homeobox protein Lhx2 [Columba livia]
Length = 416
Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 124/210 (59%), Gaps = 40/210 (19%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 137 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQV 196
Query: 59 -CGSAEIEQPMSPRPAPWQPTT-----------VQKGRPRKRKLSVDSPTPPSEDINANV 106
A++ P +T VQKGRPRKRK SP P
Sbjct: 197 HFNHADVAAGKGPALGAGSASTLGLPYYNGVGTVQKGRPRKRK----SPGP--------- 243
Query: 107 MRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVH-SHQRTKRMRTSFKHHQLRTM 165
DL++ +LS G+ + S+Q+TKRMRTSFKHHQLRTM
Sbjct: 244 ------------GADLAAYNAALSCNENDGDHLDRDQQYPSNQKTKRMRTSFKHHQLRTM 291
Query: 166 KSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 292 KSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 321
>gi|47214973|emb|CAG01307.1| unnamed protein product [Tetraodon nigroviridis]
Length = 396
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 124/206 (60%), Gaps = 36/206 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDSLVYCRLHFETLVQGEYQT 179
Query: 59 -CGSAEIEQPMSPRPAPW-------QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
A++ PA TVQKGRPRKRK SP P +E
Sbjct: 180 HFSHADVVAHKGLGPANTLGLSYFNGVGTVQKGRPRKRK----SPGPGAE---------- 225
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYF 169
L++ +LS G S S S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 226 -----------LAAYNAALSCNENDGESMDRDSQYSSTQKTKRMRTSFKHHQLRTMKSYF 274
Query: 170 NINQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 AINHNPDAKDLKQLAQKTGLTKRVLQ 300
>gi|190338019|gb|AAI62549.1| LIM homeobox 2 [Danio rerio]
Length = 396
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 124/206 (60%), Gaps = 36/206 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL------R 54
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFETLIQGDFPT 179
Query: 55 HRDYCGSAEIEQPMSPRPAPWQ----PTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
H ++ A + S P TVQKGRPRKRK SP P
Sbjct: 180 HFNHTDVAPNKGLSSTGPLGLSYYNGVNTVQKGRPRKRK----SPGP------------- 222
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYF 169
DL++ +LS G++ S S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 223 --------GADLAAYNAALSCNENDGDAMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYF 274
Query: 170 NINQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 AINHNPDAKDLKQLAQKTGLTKRVLQ 300
>gi|410929509|ref|XP_003978142.1| PREDICTED: LIM/homeobox protein Lhx2-like [Takifugu rubripes]
Length = 417
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 124/206 (60%), Gaps = 36/206 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 141 LGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDSLVYCRLHFETLVQGEYQT 200
Query: 59 -CGSAEIEQPMSPRPAPW-------QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
A++ PA TVQKGRPRKRK SP P +E
Sbjct: 201 HFNHADVVPHKGLGPANTLGLSYFNGVGTVQKGRPRKRK----SPGPGAE---------- 246
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYF 169
L++ +LS G S S S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 247 -----------LAAYNAALSCNENDGESMDRDSQYSSTQKTKRMRTSFKHHQLRTMKSYF 295
Query: 170 NINQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 296 AINHNPDAKDLKQLAQKTGLTKRVLQ 321
>gi|45382441|ref|NP_990220.1| LIM/homeobox protein Lhx2 [Gallus gallus]
gi|2340819|dbj|BAA21846.1| LIM homeodomain [Gallus gallus]
Length = 400
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 123/210 (58%), Gaps = 40/210 (19%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 121 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQV 180
Query: 59 -CGSAEIEQPMSPRPAPWQPTT-----------VQKGRPRKRKLSVDSPTPPSEDINANV 106
+++ P T VQKGRPRKRK SP P
Sbjct: 181 HFNHSDVAAGKGPALGAGSANTLGLPYYNGVGTVQKGRPRKRK----SPGP--------- 227
Query: 107 MRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVH-SHQRTKRMRTSFKHHQLRTM 165
DL++ +LS G+ + S+Q+TKRMRTSFKHHQLRTM
Sbjct: 228 ------------GADLAAYNAALSCNENDGDHLDRDQQYPSNQKTKRMRTSFKHHQLRTM 275
Query: 166 KSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 276 KSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 305
>gi|187171273|ref|NP_001035099.3| LIM/homeobox protein Lhx2 [Danio rerio]
Length = 427
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 123/206 (59%), Gaps = 36/206 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL------R 54
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L
Sbjct: 151 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFETLIQGDFPT 210
Query: 55 HRDYCGSAEIEQPMSPRPAPWQ----PTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
H ++ A + S P TVQKGRPRKRK SP P
Sbjct: 211 HFNHTDVAPNKGLSSTGPLGLSYYNGVNTVQKGRPRKRK----SPGP------------- 253
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYF 169
DL++ +LS G+ S S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 254 --------GADLAAYNAALSCNENDGDPMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYF 305
Query: 170 NINQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 306 AINHNPDAKDLKQLAQKTGLTKRVLQ 331
>gi|355753040|gb|EHH57086.1| hypothetical protein EGM_06651, partial [Macaca fascicularis]
Length = 398
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 126/210 (60%), Gaps = 40/210 (19%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 178
Query: 59 -CGSAEIEQPMS---------PRPAPWQPT--TVQKGRPRKRKLSVDSPTPPSEDINANV 106
A++ S P P+ TVQKGRPRKRK SP P
Sbjct: 179 HFNHADVAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP--------- 225
Query: 107 MRIPSTTLEMLHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTM 165
DL++ +LS E+ A + S Q+TKRMRTSFKHHQLRTM
Sbjct: 226 ------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTM 273
Query: 166 KSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 KSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 303
>gi|449478340|ref|XP_004175607.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Taeniopygia
guttata]
Length = 399
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 123/210 (58%), Gaps = 40/210 (19%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQV 179
Query: 59 -CGSAEIEQPMSPRPAPWQPTT-----------VQKGRPRKRKLSVDSPTPPSEDINANV 106
+++ P T VQKGRPRKRK SP P
Sbjct: 180 HFNHSDVAAGKGPALGAGSANTLGLPYYNGVGTVQKGRPRKRK----SPGP--------- 226
Query: 107 MRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVH-SHQRTKRMRTSFKHHQLRTM 165
DL++ +LS G+ + S+Q+TKRMRTSFKHHQLRTM
Sbjct: 227 ------------GADLAAYNAALSCNENDGDHLDRDQQYPSNQKTKRMRTSFKHHQLRTM 274
Query: 166 KSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 KSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 304
>gi|75993708|gb|ABA33890.1| lim homeobox transcription factor 2 [Danio rerio]
Length = 396
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 123/206 (59%), Gaps = 36/206 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL------R 54
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFETLIQGDFPT 179
Query: 55 HRDYCGSAEIEQPMSPRPAPWQ----PTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
H ++ A + S P TVQKGRPRKRK SP P
Sbjct: 180 HFNHTDVAPNKGLSSTGPLGLSYYNGVNTVQKGRPRKRK----SPGP------------- 222
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYF 169
DL++ +LS G+ S S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 223 --------GADLAAYNAALSCNENDGDPMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYF 274
Query: 170 NINQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 AINHNPDAKDLKQLAQKTGLTKRVLQ 300
>gi|224073927|ref|XP_002191376.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Taeniopygia
guttata]
Length = 436
Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 123/210 (58%), Gaps = 40/210 (19%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 157 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQV 216
Query: 59 -CGSAEIEQPMSPRPAPWQPTT-----------VQKGRPRKRKLSVDSPTPPSEDINANV 106
+++ P T VQKGRPRKRK SP P
Sbjct: 217 HFNHSDVAAGKGPALGAGSANTLGLPYYNGVGTVQKGRPRKRK----SPGP--------- 263
Query: 107 MRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVH-SHQRTKRMRTSFKHHQLRTM 165
DL++ +LS G+ + S+Q+TKRMRTSFKHHQLRTM
Sbjct: 264 ------------GADLAAYNAALSCNENDGDHLDRDQQYPSNQKTKRMRTSFKHHQLRTM 311
Query: 166 KSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 312 KSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 341
>gi|133778048|gb|AAI27382.2| LIM homeobox 2 [Danio rerio]
gi|182888988|gb|AAI64490.1| Lhx2 protein [Danio rerio]
Length = 396
Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 123/206 (59%), Gaps = 36/206 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL------R 54
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YC+ H+E L
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCKLHFETLIQGDFPT 179
Query: 55 HRDYCGSAEIEQPMSPRPAPWQ----PTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
H ++ A + S P TVQKGRPRKRK SP P
Sbjct: 180 HFNHTDVAPNKGLSSTGPLGLSYYNGVNTVQKGRPRKRK----SPGP------------- 222
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYF 169
DL++ +LS G+ S S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 223 --------GADLAAYNAALSCNENDGDPMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYF 274
Query: 170 NINQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 AINHNPDAKDLKQLAQKTGLTKRVLQ 300
>gi|301618805|ref|XP_002938795.1| PREDICTED: LIM/homeobox protein Lhx2-like [Xenopus (Silurana)
tropicalis]
Length = 419
Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 124/214 (57%), Gaps = 49/214 (22%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 141 LGISASEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQV 200
Query: 59 ----------------CGSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI 102
G+A + P TVQKGRPRKRK SP P
Sbjct: 201 HFSHSDVASGKGSGLGTGAASLGLPYYNGVG-----TVQKGRPRKRK----SPGP----- 246
Query: 103 NANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHS-HQRTKRMRTSFKHHQ 161
DL++ +LS G+ ++ +Q+TKRMRTSFKHHQ
Sbjct: 247 ----------------GADLAAYNAALSCNENDGDHMDRDQQYTPNQKTKRMRTSFKHHQ 290
Query: 162 LRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
LRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 291 LRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 324
>gi|76667074|dbj|BAE45356.1| LIM homeodomain type transcription factor Lhx2 [Danio rerio]
Length = 395
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 122/205 (59%), Gaps = 35/205 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL-----RH 55
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD GM+D ++YCR H+E L H
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHVGMKDSLVYCRLHFETLIQETSTH 179
Query: 56 RDYCGSAEIEQPMSPRPAPWQ----PTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPS 111
++ A + S P TVQKGRPRKRK SP P
Sbjct: 180 FNHTDVAPNKGLSSTGPLGLSYYNGVNTVQKGRPRKRK----SPGP-------------- 221
Query: 112 TTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
DL++ +LS G+ S S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 222 -------GADLAAYNAALSCNENDGDPMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYFA 274
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 INHNPDAKDLKQLAQKTGLTKRVLQ 299
>gi|1742937|emb|CAA71049.1| Af-ap [Artemia franciscana]
Length = 267
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 131/233 (56%), Gaps = 55/233 (23%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS- 61
+ ++LVMRARD ++HL CFTC +C LTKGD+FGMRD ++YCR H+++L+H S
Sbjct: 48 LGPNDLVMRARDFIYHLSCFTCAACNQSLTKGDIFGMRDGVVYCRLHFDMLQHGGGSFSP 107
Query: 62 -----AEIEQPMSPR--------------------------------PAPWQPTTVQKGR 84
++ + PR P T QKGR
Sbjct: 108 NDSLXGDMPHGIVPRHLLQHQMDIHEGEIHEGDIHNGLPGIGGIARIPFFNGNGTTQKGR 167
Query: 85 PRKRKLSVDSPTPPSEDINANV-MRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSG 143
PRKRKL +D+N + MR + L+M+ S DLS YES G
Sbjct: 168 PRKRKLQ--------QDVNQGMNMRAMTPALDMM-SPDLSGIDGLSGYESSGGQ------ 212
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH + QRTKRMRTSFKHHQLRTMKSYF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 213 VHGNSQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQ 265
>gi|259013283|ref|NP_001158443.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
gi|197320559|gb|ACH68441.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
Length = 402
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 123/205 (60%), Gaps = 37/205 (18%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC- 59
+GIS+SE+VMRARDLV+HL CFTC +C L GD FGM+D M+YCR HYE + H ++
Sbjct: 126 LGISASEMVMRARDLVYHLSCFTCATCNKALATGDHFGMKDAMVYCRSHYEAMLHTEHVM 185
Query: 60 GSAEIEQPMSPRP--APWQPT-------TVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
G + SP P +P Q T VQKGRPRKRK P+ + + + P
Sbjct: 186 GLSPYHHQPSPMPGASPTQHTPYYNGVGAVQKGRPRKRK-------SPNLENDYHTQGYP 238
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
E + DL+S ++ QRTKRMRTSFKHHQLRTMKSYF
Sbjct: 239 HNDSE--NHQDLNSDQ------------------YTQQRTKRMRTSFKHHQLRTMKSYFA 278
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
+N NPDAKDLKQLAQKTGL+KRVL
Sbjct: 279 LNHNPDAKDLKQLAQKTGLTKRVLH 303
>gi|508712|gb|AAB08752.1| LIM-homeobox domain protein [Homo sapiens]
Length = 423
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 127/216 (58%), Gaps = 46/216 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 178
Query: 59 -CGSAEIEQP---------------MSPRPAPWQP--TTVQKGRPRKRKLSVDSPTPPSE 100
A+++ +P P+ TVQKGRPRKRK SP P
Sbjct: 179 HFNHADVQAARARAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP--- 231
Query: 101 DINANVMRIPSTTLEMLHSGDLSSSMESLS-YESGAGNSSPGSGVHSHQRTKRMRTSFKH 159
DL++ +LS E+ A + S Q+TKRMRTSFKH
Sbjct: 232 ------------------GADLAAYTRALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKH 273
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 HQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 309
>gi|344243883|gb|EGV99986.1| LIM/homeobox protein Lhx2 [Cricetulus griseus]
Length = 385
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 124/213 (58%), Gaps = 43/213 (20%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 103 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 162
Query: 61 ---------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPSEDIN 103
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 163 HFNHADVAAGAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP------ 212
Query: 104 ANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFKHHQL 162
DL++ +LS E+ A + S Q+TKRMRTSFKHHQL
Sbjct: 213 ---------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQL 257
Query: 163 RTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 258 RTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 290
>gi|355567447|gb|EHH23788.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 126/217 (58%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 59 -CGSAEIEQP----------------MSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
A++ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAXXXXAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|354498706|ref|XP_003511455.1| PREDICTED: LIM/homeobox protein Lhx2-like [Cricetulus griseus]
Length = 475
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 124/213 (58%), Gaps = 43/213 (20%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 193 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 252
Query: 61 ---------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPSEDIN 103
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 253 HFNHADVAAGAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP------ 302
Query: 104 ANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFKHHQL 162
DL++ +LS E+ A + S Q+TKRMRTSFKHHQL
Sbjct: 303 ---------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQL 347
Query: 163 RTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 348 RTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 380
>gi|6754538|ref|NP_034840.1| LIM/homeobox protein Lhx2 [Mus musculus]
gi|157817308|ref|NP_001100041.1| LIM/homeobox protein Lhx2 [Rattus norvegicus]
gi|8134552|sp|Q9Z0S2.1|LHX2_MOUSE RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|4406516|gb|AAD20012.1| LIM-homeodomain protein MLHX2 [Mus musculus]
gi|26343551|dbj|BAC35432.1| unnamed protein product [Mus musculus]
gi|33416474|gb|AAH55741.1| LIM homeobox protein 2 [Mus musculus]
gi|149047902|gb|EDM00518.1| LIM homeobox protein 2 (predicted) [Rattus norvegicus]
Length = 406
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 126/221 (57%), Gaps = 55/221 (24%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 59 ---------------------CGSAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSP 95
GSA +P P+ TVQKGRPRKRK SP
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGSAGA----NPLGLPYYNGVGTVQKGRPRKRK----SP 231
Query: 96 TPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMR 154
P DL++ +LS E+ A + S Q+TKRMR
Sbjct: 232 GP---------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMR 270
Query: 155 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 271 TSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|348570110|ref|XP_003470840.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 3 [Cavia porcellus]
Length = 404
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 125/216 (57%), Gaps = 46/216 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 178
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P +
Sbjct: 179 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGPGA 234
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKH 159
+ L ++GD + E+ A + S Q+TKRMRTSFKH
Sbjct: 235 D-------------LAAYNAGDCN--------ENDAEHLDRDQPYPSSQKTKRMRTSFKH 273
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 HQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 309
>gi|126294098|ref|XP_001365314.1| PREDICTED: LIM/homeobox protein Lhx2-like [Monodelphis domestica]
Length = 408
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 123/219 (56%), Gaps = 49/219 (22%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC- 59
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L DY
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGDYQA 179
Query: 60 --------------------GSAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTP 97
GS + P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAAAKGSGLGTGGANTLGLPYYNGVGTVQKGRPRKRK----SPGP 235
Query: 98 PSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVH-SHQRTKRMRTS 156
DL++ +LS G+ + S Q+TKRMRTS
Sbjct: 236 ---------------------GADLAAYNAALSCNENDGDHLDRDQQYPSSQKTKRMRTS 274
Query: 157 FKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 313
>gi|395505659|ref|XP_003757157.1| PREDICTED: LIM/homeobox protein Lhx2 [Sarcophilus harrisii]
Length = 408
Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 123/219 (56%), Gaps = 49/219 (22%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L DY
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGDYQA 179
Query: 59 -CGSAEIEQPMSPR--------------------PAPWQPTTVQKGRPRKRKLSVDSPTP 97
A++ + P TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAAAKGSGLGAGGANTLGLPYYNGVGTVQKGRPRKRK----SPGP 235
Query: 98 PSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVH-SHQRTKRMRTS 156
DL++ +LS G+ + S Q+TKRMRTS
Sbjct: 236 ---------------------GADLAAYNAALSCNENDGDHLDRDQQYPSSQKTKRMRTS 274
Query: 157 FKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 313
>gi|348570106|ref|XP_003470838.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Cavia porcellus]
Length = 404
Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 125/216 (57%), Gaps = 46/216 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 178
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P +
Sbjct: 179 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGPGA 234
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKH 159
+ L ++GD + E+ A + S Q+TKRMRTSFKH
Sbjct: 235 D-------------LAAYNAGDCN--------ENDAEHLDRDQPYPSSQKTKRMRTSFKH 273
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 HQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 309
>gi|301769257|ref|XP_002920045.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 2 [Ailuropoda
melanoleuca]
Length = 404
Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 125/216 (57%), Gaps = 46/216 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 178
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P +
Sbjct: 179 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGPGA 234
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKH 159
+ L ++GD + E+ A + S Q+TKRMRTSFKH
Sbjct: 235 D-------------LAAYNAGDCN--------ENDAEHLDRDQPYPSSQKTKRMRTSFKH 273
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 HQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 309
>gi|291290877|ref|NP_001167469.1| LIM homeobox 2 [Xenopus laevis]
gi|37720481|gb|AAN41461.1| LIM homeobox protein 2 [Xenopus laevis]
Length = 419
Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 124/214 (57%), Gaps = 49/214 (22%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 141 LGISASEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQV 200
Query: 59 ----------------CGSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI 102
G+A + P TVQKGRPRKRK +P S
Sbjct: 201 HFNHSDVASGKGSGLGTGAASLGLPYYNGVG-----TVQKGRPRKRK------SPGS--- 246
Query: 103 NANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVH-SHQRTKRMRTSFKHHQ 161
DL++ +LS G+ + S+Q++KRMRTSFKHHQ
Sbjct: 247 ----------------GADLAAYNAALSCNENDGDHMDRDQQYTSNQKSKRMRTSFKHHQ 290
Query: 162 LRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
LRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 291 LRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 324
>gi|440908262|gb|ELR58305.1| LIM/homeobox protein Lhx2, partial [Bos grunniens mutus]
Length = 410
Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 124/216 (57%), Gaps = 46/216 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 125 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 184
Query: 61 ------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPSE 100
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 185 HFNHADVAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP--- 237
Query: 101 DINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFKH 159
DL++ +LS E+ A + S Q+TKRMRTSFKH
Sbjct: 238 ------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKH 279
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 280 HQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 315
>gi|348570108|ref|XP_003470839.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Cavia porcellus]
Length = 406
Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|432095435|gb|ELK26634.1| LIM/homeobox protein Lhx2 [Myotis davidii]
Length = 389
Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 103 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 162
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 163 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 216
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 217 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 257
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 258 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 294
>gi|4406518|gb|AAD20013.1| LIM-homeodomain protein HLHX2 [Homo sapiens]
Length = 389
Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 103 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 162
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 163 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 216
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 217 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 257
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 258 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 294
>gi|301769255|ref|XP_002920044.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 1 [Ailuropoda
melanoleuca]
gi|345806102|ref|XP_863668.2| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Canis lupus
familiaris]
gi|281350174|gb|EFB25758.1| hypothetical protein PANDA_008723 [Ailuropoda melanoleuca]
Length = 406
Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|403299862|ref|XP_003940693.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 406
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|281427312|ref|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa]
gi|300794175|ref|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus]
gi|239937382|dbj|BAH79127.1| LIM homeobox protein 2 [Sus scrofa]
gi|296482193|tpg|DAA24308.1| TPA: LIM homeobox protein 2-like [Bos taurus]
Length = 406
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|395824161|ref|XP_003785339.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Otolemur garnettii]
Length = 406
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|345806104|ref|XP_548461.3| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Canis lupus
familiaris]
Length = 397
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 111 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 170
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 171 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 224
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 225 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 265
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 266 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 302
>gi|30795196|ref|NP_004780.3| LIM/homeobox protein Lhx2 [Homo sapiens]
gi|297685314|ref|XP_002820237.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pongo abelii]
gi|397473226|ref|XP_003808118.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pan paniscus]
gi|426362988|ref|XP_004048630.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Gorilla gorilla
gorilla]
gi|8247936|sp|P50458.2|LHX2_HUMAN RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|62739692|gb|AAH93662.1| LIM homeobox 2 [Homo sapiens]
gi|85567249|gb|AAI12186.1| LIM homeobox protein 2 [Homo sapiens]
gi|119607982|gb|EAW87576.1| LIM homeobox 2, isoform CRA_a [Homo sapiens]
gi|167773563|gb|ABZ92216.1| LIM homeobox 2 [synthetic construct]
gi|261859194|dbj|BAI46119.1| LIM homeobox 2 [synthetic construct]
Length = 406
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|193786574|dbj|BAG51357.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|387763115|ref|NP_001248721.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
gi|402896424|ref|XP_003911300.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Papio anubis]
gi|380818036|gb|AFE80892.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|291408369|ref|XP_002720520.1| PREDICTED: LIM homeobox protein 2-like [Oryctolagus cuniculus]
Length = 406
Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|332229975|ref|XP_003264161.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Nomascus
leucogenys]
Length = 406
Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|296190791|ref|XP_002743350.1| PREDICTED: LIM/homeobox protein Lhx2 [Callithrix jacchus]
Length = 365
Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 79 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 138
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 139 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 192
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 193 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 233
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 234 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 270
>gi|395824163|ref|XP_003785340.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Otolemur garnettii]
Length = 414
Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 128 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 187
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 188 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 241
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 242 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 282
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 283 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 319
>gi|114626624|ref|XP_528427.2| PREDICTED: LIM/homeobox protein Lhx2 [Pan troglodytes]
Length = 365
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 79 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 138
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 139 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 192
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 193 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 233
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 234 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 270
>gi|403299864|ref|XP_003940694.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 111 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 170
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 171 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 224
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 225 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 265
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 266 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 302
>gi|344271943|ref|XP_003407796.1| PREDICTED: LIM/homeobox protein Lhx2 [Loxodonta africana]
Length = 365
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 79 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPT 138
Query: 59 -----------------CGSAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 139 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 192
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 193 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 233
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 234 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 270
>gi|332229977|ref|XP_003264162.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Nomascus
leucogenys]
Length = 414
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 128 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 187
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 188 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 241
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 242 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 282
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 283 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 319
>gi|297685312|ref|XP_002820236.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pongo abelii]
Length = 414
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 128 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 187
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 188 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 241
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 242 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 282
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 283 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 319
>gi|431898812|gb|ELK07182.1| LIM/homeobox protein Lhx2 [Pteropus alecto]
Length = 414
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 128 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 187
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 188 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 241
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 242 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 282
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 283 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 319
>gi|402896426|ref|XP_003911301.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Papio anubis]
Length = 414
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 128 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 187
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 188 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 241
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 242 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 282
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 283 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 319
>gi|397473228|ref|XP_003808119.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pan paniscus]
gi|426362990|ref|XP_004048631.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Gorilla gorilla
gorilla]
gi|21753589|dbj|BAC04371.1| unnamed protein product [Homo sapiens]
gi|119607983|gb|EAW87577.1| LIM homeobox 2, isoform CRA_b [Homo sapiens]
Length = 397
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 111 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 170
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 171 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 224
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 225 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 265
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 266 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 302
>gi|338720511|ref|XP_001502198.3| PREDICTED: LIM/homeobox protein Lhx2-like [Equus caballus]
Length = 373
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 87 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 146
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 147 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 200
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 201 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 241
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 242 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 278
>gi|225708026|gb|ACO09859.1| LIM/homeobox protein Lhx9 [Osmerus mordax]
Length = 317
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 121/200 (60%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L DY
Sbjct: 137 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRVHFETLVQGDYHP 196
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
AE+ + P+ T QKGRPRKRK P+ I+ +
Sbjct: 197 QLNYAELAGKGAGLSLPYFNGTGTAQKGRPRKRK-------SPAMGID----------IA 239
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
+SG + + L + S P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 240 SYNSGCNENEADHLDRDQ---QSYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 291
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 292 DAKDLKQLAQKTGLTKRVLQ 311
>gi|405961382|gb|EKC27193.1| LIM/homeobox protein Lhx9 [Crassostrea gigas]
Length = 415
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 119/203 (58%), Gaps = 33/203 (16%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI+++ELVMRA+DLVFH++CFTC SC LT GD FGM+D++IYCR YEI+ DY
Sbjct: 130 GITANELVMRAKDLVFHINCFTCASCNKTLTTGDQFGMQDDLIYCRTDYEIIFQGDYFSR 189
Query: 62 AEIEQPMSPRP----APWQ---PTTVQKGRPRKRKLSV--DSPTPPSEDINANVMRIPST 112
P P P P+ T VQKGRPRKRK V PP
Sbjct: 190 M---HPALPCPNNGHIPFYNGVGTAVQKGRPRKRKNHVIDHDGCPPG------------- 233
Query: 113 TLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNIN 172
+ + H + + + G G+ P R KR+RTSFKHHQLRTMKSYF +N
Sbjct: 234 -MGLGHGDGPDRGGDLMRQDGGYGSQPP-------PRQKRVRTSFKHHQLRTMKSYFALN 285
Query: 173 QNPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 286 HNPDAKDLKQLAQKTGLSKRVLQ 308
>gi|260794981|ref|XP_002592485.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277705|gb|EEN48496.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 452
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 119/204 (58%), Gaps = 34/204 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLVFHL+CF C +C LT GD +GMR + +YCR YE L H +
Sbjct: 127 LGISASEMVMRARDLVFHLNCFMCETCNRPLTTGDQYGMRGDTVYCRYDYETLVHGE-AS 185
Query: 61 SAEIEQPMSPRPAPWQPTTVQ---------KGRPRKRKLSVDSPTPPSEDINANVMRIPS 111
+ SP P PT Q KGRPRKRK SP P
Sbjct: 186 HLPLGAACSPPQTPTSPTGAQFYNGVGAIHKGRPRKRK----SPEPNGY----------- 230
Query: 112 TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNI 171
M D +S + Y+ G GNS PG H QR KRMRTSFKHHQLR MKSYF +
Sbjct: 231 ----MQGDNDSDTSSHNDGYQQG-GNS-PG---HQPQRQKRMRTSFKHHQLRAMKSYFAL 281
Query: 172 NQNPDAKDLKQLAQKTGLSKRVLQ 195
N NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 282 NHNPDAKDLKQLAQKTGLTKRVLQ 305
>gi|547852|sp|P36198.1|LHX2_RAT RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
Length = 426
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 121/216 (56%), Gaps = 46/216 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISESEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPP 178
Query: 59 -----CGSAEIEQPMSPRPAPWQPT-------------TVQKGRPRKRKLSVDSPTPPSE 100
+ R W TVQKGRPRKRK SP P
Sbjct: 179 HFNHADVARAAAAAEQLRVQDWAQLGLTLGLPYYNGVGTVQKGRPRKRK----SPGP--- 231
Query: 101 DINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFKH 159
DL++ +LS E+ A + S Q+TKRMRTSFKH
Sbjct: 232 ------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKH 273
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 HQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 309
>gi|348578262|ref|XP_003474902.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cavia
porcellus]
Length = 388
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGSLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|149058476|gb|EDM09633.1| LIM homeobox 9, isoform CRA_b [Rattus norvegicus]
Length = 282
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 90 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 149
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 150 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 195
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 196 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 244
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 245 DAKDLKQLAQKTGLTKRVLQG 265
>gi|149058479|gb|EDM09636.1| LIM homeobox 9, isoform CRA_d [Rattus norvegicus]
Length = 267
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 90 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 149
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 150 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 195
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 196 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 244
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 245 DAKDLKQLAQKTGLTKRVLQ 264
>gi|123299964|dbj|BAF45328.1| LIM homeobox protein 2 [Sus scrofa]
Length = 373
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 180 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 233
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 234 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 274
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
>gi|410986202|ref|XP_003999401.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Felis catus]
Length = 388
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC- 59
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYTP 188
Query: 60 --GSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|149058475|gb|EDM09632.1| LIM homeobox 9, isoform CRA_a [Rattus norvegicus]
gi|149058478|gb|EDM09635.1| LIM homeobox 9, isoform CRA_a [Rattus norvegicus]
Length = 349
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 90 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 149
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 150 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 195
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 196 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 244
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 245 DAKDLKQLAQKTGLTKRVLQ 264
>gi|4530371|gb|AAD22008.1| LIM homeobox protein 9 [Mus musculus]
Length = 378
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCFTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 273
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 DAKDLKQLAQKTGLTKRVLQ 293
>gi|149743835|ref|XP_001492921.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Equus caballus]
Length = 388
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|403307414|ref|XP_003944190.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 388
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|117306370|gb|AAI26705.1| LHX9 protein [Bos taurus]
Length = 388
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|296230329|ref|XP_002760660.1| PREDICTED: LIM/homeobox protein Lhx9 [Callithrix jacchus]
Length = 388
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|62241033|ref|NP_001014434.1| LIM/homeobox protein Lhx9 isoform 2 [Homo sapiens]
gi|114571650|ref|XP_525011.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 6 [Pan troglodytes]
gi|297281170|ref|XP_001110674.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Macaca mulatta]
gi|395729258|ref|XP_002809704.2| PREDICTED: LIM/homeobox protein Lhx9 [Pongo abelii]
gi|397505118|ref|XP_003823120.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan paniscus]
gi|402857736|ref|XP_003893401.1| PREDICTED: LIM/homeobox protein Lhx9 [Papio anubis]
gi|426333155|ref|XP_004028150.1| PREDICTED: LIM/homeobox protein Lhx9 [Gorilla gorilla gorilla]
gi|9367761|emb|CAB97493.1| LIM-homeobox 9 [Homo sapiens]
gi|119611697|gb|EAW91291.1| LIM homeobox 9, isoform CRA_e [Homo sapiens]
Length = 388
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|348578264|ref|XP_003474903.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Cavia
porcellus]
Length = 321
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGSLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQG 304
>gi|126306417|ref|XP_001367814.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Monodelphis
domestica]
Length = 380
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 118/200 (59%), Gaps = 28/200 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
+LS + + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ----SELSCNENEADHLDRDQQPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 275
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 276 DAKDLKQLAQKTGLTKRVLQ 295
>gi|344276912|ref|XP_003410249.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Loxodonta africana]
Length = 388
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDMVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|444717046|gb|ELW57882.1| LIM/homeobox protein Lhx9 [Tupaia chinensis]
Length = 378
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGAGTVQKGRPRKRK----SPALGVDIVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 273
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 DAKDLKQLAQKTGLTKRVLQ 293
>gi|410986204|ref|XP_003999402.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Felis catus]
Length = 380
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 117/200 (58%), Gaps = 28/200 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC- 59
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYTP 178
Query: 60 --GSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYNSA-------- 226
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
LS + + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 227 ------LSCNENEADHLDRDQQPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 275
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 276 DAKDLKQLAQKTGLTKRVLQ 295
>gi|291402698|ref|XP_002717725.1| PREDICTED: LIM homeobox protein 9-like isoform 3 [Oryctolagus
cuniculus]
Length = 321
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQG 304
>gi|335296201|ref|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sus scrofa]
Length = 388
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|119611698|gb|EAW91292.1| LIM homeobox 9, isoform CRA_f [Homo sapiens]
Length = 321
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQG 304
>gi|291402696|ref|XP_002717724.1| PREDICTED: LIM homeobox protein 9-like isoform 2 [Oryctolagus
cuniculus]
Length = 388
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|119611694|gb|EAW91288.1| LIM homeobox 9, isoform CRA_b [Homo sapiens]
Length = 378
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 273
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 DAKDLKQLAQKTGLTKRVLQ 293
>gi|66792874|ref|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus]
gi|61555226|gb|AAX46681.1| LIM homeobox 9 [Bos taurus]
gi|296478851|tpg|DAA20966.1| TPA: LIM/homeobox protein Lhx9 [Bos taurus]
Length = 378
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 273
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 DAKDLKQLAQKTGLTKRVLQ 293
>gi|301767830|ref|XP_002919335.1| PREDICTED: LIM/homeobox protein Lhx9-like [Ailuropoda melanoleuca]
Length = 447
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|31077136|ref|NP_852032.1| LIM/homeobox protein Lhx9 [Rattus norvegicus]
gi|81895227|sp|Q80W90.1|LHX9_RAT RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|30525882|gb|AAP32472.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 388
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|354485100|ref|XP_003504722.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cricetulus
griseus]
gi|118763751|gb|AAI28723.1| Lhx9 protein [Rattus norvegicus]
Length = 321
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQG 304
>gi|148707589|gb|EDL39536.1| LIM homeobox protein 9, isoform CRA_a [Mus musculus]
Length = 342
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|410979132|ref|XP_003995940.1| PREDICTED: LIM/homeobox protein Lhx2 [Felis catus]
Length = 484
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 124/217 (57%), Gaps = 47/217 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 79 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 138
Query: 61 -------------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPS 99
+ +P P+ TVQKGRPRKRK SP P
Sbjct: 139 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGP-- 192
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSY-ESGAGNSSPGSGVHSHQRTKRMRTSFK 158
DL++ +LS E+ A + S Q+TKRMRTSFK
Sbjct: 193 -------------------GADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFK 233
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
HHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 234 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 270
>gi|6754542|ref|NP_034844.1| LIM/homeobox protein Lhx9 isoform b [Mus musculus]
gi|6179608|emb|CAB59907.1| putative LIM-homeodomain alpha isoform [Mus musculus]
gi|148707590|gb|EDL39537.1| LIM homeobox protein 9, isoform CRA_b [Mus musculus]
Length = 321
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQG 304
>gi|34733871|gb|AAQ81868.1| LIM homeobox gene protein 2 [Ambystoma mexicanum]
Length = 398
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 117/209 (55%), Gaps = 39/209 (18%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCSTCNKMLTTGDHFGMKDSLVYCRLHFESLIQGEYQV 179
Query: 59 -----------CGSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVM 107
P T QKGRPRKRK SP P
Sbjct: 180 HFNHTDGGSGKGPGLGGGHNALGLPYYNGVGTXQKGRPRKRK----SPGP---------- 225
Query: 108 RIPSTTLEMLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMK 166
DL++ +LS G+ S Q+TKRMRTSFKHHQLRTMK
Sbjct: 226 -----------GADLAAYNAALSCNENDGDHMDRDQSYSSSQKTKRMRTSFKHHQLRTMK 274
Query: 167 SYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 275 SYFAINHNPDAKDLKQLAQKTGLTKRVLQ 303
>gi|403307412|ref|XP_003944189.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 399
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/200 (50%), Positives = 119/200 (59%), Gaps = 28/200 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG LS + + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SG-LSCNENEADHLDRDQQPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 294
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 295 DAKDLKQLAQKTGLTKRVLQ 314
>gi|426223060|ref|XP_004005697.1| PREDICTED: LIM/homeobox protein Lhx2 [Ovis aries]
Length = 404
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 121/214 (56%), Gaps = 43/214 (20%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPA 179
Query: 61 -----------------SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPSED 101
+ +P P+ TVQKGRPRKRK SP P ++
Sbjct: 180 HFNHADVAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK----SPGPGADL 235
Query: 102 INANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQ 161
N P E+ A + S Q+TKRMRTSFKHHQ
Sbjct: 236 AAYNA--APGCN------------------ENDAEPRARAQPYPSSQKTKRMRTSFKHHQ 275
Query: 162 LRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
LRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 276 LRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 309
>gi|397505116|ref|XP_003823119.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Pan paniscus]
gi|441624364|ref|XP_004088986.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Nomascus
leucogenys]
Length = 399
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/200 (50%), Positives = 119/200 (59%), Gaps = 28/200 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG LS + + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SG-LSCNENEADHLDRDQQPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 294
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 295 DAKDLKQLAQKTGLTKRVLQ 314
>gi|344254817|gb|EGW10921.1| LIM/homeobox protein Lhx9 [Cricetulus griseus]
Length = 311
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 273
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 DAKDLKQLAQKTGLTKRVLQG 294
>gi|348578260|ref|XP_003474901.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cavia
porcellus]
Length = 397
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGSLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|395838925|ref|XP_003792355.1| PREDICTED: LIM/homeobox protein Lhx9 [Otolemur garnettii]
Length = 397
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|6180222|emb|CAB59909.1| putative LIM homeodomain protein [Mus musculus]
Length = 299
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 107 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 166
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 167 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 212
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 213 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 261
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 DAKDLKQLAQKTGLTKRVLQG 282
>gi|440904877|gb|ELR55334.1| LIM/homeobox protein Lhx9 [Bos grunniens mutus]
Length = 397
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|395531047|ref|XP_003767594.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Sarcophilus
harrisii]
Length = 380
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 28/200 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG LS + + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SG-LSCNENEADHLDRDQQPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 275
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 276 DAKDLKQLAQKTGLTKRVLQ 295
>gi|224471838|sp|A0JNI8.2|LHX9_BOVIN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|110665672|gb|ABG81482.1| LIM homeobox 9 [Bos taurus]
Length = 397
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|33569216|ref|NP_064589.2| LIM/homeobox protein Lhx9 isoform 1 [Homo sapiens]
gi|73960328|ref|XP_848787.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Canis lupus
familiaris]
gi|332230752|ref|XP_003264559.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Nomascus
leucogenys]
gi|224471883|sp|Q9NQ69.3|LHX9_HUMAN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|33416232|gb|AAP32471.2| LIM-homeobox 9 protein [Homo sapiens]
gi|119611696|gb|EAW91290.1| LIM homeobox 9, isoform CRA_d [Homo sapiens]
gi|124297089|gb|AAI31623.1| LIM homeobox 9 [Homo sapiens]
gi|355558916|gb|EHH15696.1| hypothetical protein EGK_01820 [Macaca mulatta]
gi|355746065|gb|EHH50690.1| hypothetical protein EGM_01558 [Macaca fascicularis]
Length = 397
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|126306413|ref|XP_001367734.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Monodelphis
domestica]
gi|395531043|ref|XP_003767592.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sarcophilus
harrisii]
Length = 388
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQ 303
>gi|281354175|gb|EFB29759.1| hypothetical protein PANDA_007956 [Ailuropoda melanoleuca]
Length = 382
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|351708127|gb|EHB11046.1| LIM/homeobox protein Lhx9 [Heterocephalus glaber]
Length = 397
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|29570244|gb|AAO85392.1| LIM-homeobox protein 9 [Sus scrofa]
Length = 369
Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|6180221|emb|CAB59908.1| putative LIM homeodomain protein [Mus musculus]
Length = 366
Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 107 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 166
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 167 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 212
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 213 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 261
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 DAKDLKQLAQKTGLTKRVLQ 281
>gi|126306415|ref|XP_001367775.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Monodelphis
domestica]
gi|395531045|ref|XP_003767593.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sarcophilus
harrisii]
Length = 321
Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 DAKDLKQLAQKTGLTKRVLQG 304
>gi|70909340|ref|NP_001020736.1| LIM/homeobox protein Lhx9 isoform a [Mus musculus]
gi|49119043|gb|AAH72623.1| LIM homeobox protein 9 [Mus musculus]
Length = 330
Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 119/201 (59%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQG 313
>gi|291402694|ref|XP_002717723.1| PREDICTED: LIM homeobox protein 9-like isoform 1 [Oryctolagus
cuniculus]
Length = 397
Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|354485102|ref|XP_003504723.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cricetulus
griseus]
Length = 397
Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|27923333|gb|AAO27570.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 325
Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 107 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 166
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 167 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 212
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 213 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 261
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 DAKDLKQLAQKTGLTKRVLQ 281
>gi|224493113|sp|A2I8Z7.1|LHX9_ASTFA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|121531644|gb|ABM55505.1| LIM/homeobox protein 9 [Astyanax mexicanus]
Length = 377
Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC SC LT GD FGMR+ ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMRENLVYCRAHFESLVQGEYHA 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
AE+ P+ + VQKGRPRKRK P+ I+ N
Sbjct: 179 PLNYAELAAKGGGLALPYFNGASAVQKGRPRKRK-------SPAMGIDINT--------- 222
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
+SG + + L + P S Q+TK MRTSFKHHQLRTMKSYF IN NP
Sbjct: 223 -YNSGCNENDADHLDRDQ---QPYPPS-----QKTKXMRTSFKHHQLRTMKSYFAINHNP 273
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 DAKDLKQLAQKTGLTKRVLQ 293
>gi|110611159|ref|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus musculus]
gi|224471884|sp|Q9WUH2.3|LHX9_MOUSE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|345803062|ref|XP_857156.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 4 [Canis lupus
familiaris]
Length = 380
Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 116/200 (58%), Gaps = 28/200 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYNSA-------- 226
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
L + + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 227 ------LGCNENEADHLDRDQQPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 275
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 276 DAKDLKQLAQKTGLTKRVLQ 295
>gi|449268141|gb|EMC79011.1| LIM/homeobox protein Lhx9 [Columba livia]
Length = 378
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 273
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 DAKDLKQLAQKTGLTKRVLQ 293
>gi|123907024|sp|Q1LWV4.1|LHX9_DANRE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|94732381|emb|CAK04966.1| novel protein similar to vertebrate LIM homeobox 9 (LHX9) [Danio
rerio]
gi|190339118|gb|AAI63023.1| Lhx9 protein [Danio rerio]
gi|190339147|gb|AAI63060.1| Lhx9 protein [Danio rerio]
gi|190339149|gb|AAI63073.1| Lhx9 protein [Danio rerio]
Length = 396
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 116/200 (58%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFETLIQGEYHP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
AE+ P+ TVQKGRPRKRK P+ I+
Sbjct: 198 QLNYAELAAKGGGLALPYFNGTGTVQKGRPRKRK-------SPAMGIDI----------- 239
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
G SS + + P Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 240 ----GSYSSGCNENDADHLDRDQQP---YPPSQKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|344276910|ref|XP_003410248.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Loxodonta africana]
Length = 380
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 117/200 (58%), Gaps = 28/200 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDMVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
S + E+ + P Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SALCCNENEADHLDRDQQPYPPS------QKTKRMRTSFKHHQLRTMKSYFAINHNP 275
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 276 DAKDLKQLAQKTGLTKRVLQ 295
>gi|431921900|gb|ELK19103.1| LIM/homeobox protein Lhx9 [Pteropus alecto]
Length = 479
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 118/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 220 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 279
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N +
Sbjct: 280 QLSYTELAAKSGGLALPYFNGAGTVQKGRPRKRK----SPALGVDIVNYS---------- 325
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + E L + S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 326 ---SGCNENEAEHLDRDQPPYPPS--------QKTKRMRTSFKHHQLRTMKSYFAINHNP 374
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 375 DAKDLKQLAQKTGLTKRVLQ 394
>gi|114571656|ref|XP_001139158.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan troglodytes]
Length = 399
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 117/200 (58%), Gaps = 28/200 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
S + E+ + P Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SALCCNENEADHLDRDQQPYPPS------QKTKRMRTSFKHHQLRTMKSYFAINHNP 294
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 295 DAKDLKQLAQKTGLTKRVLQ 314
>gi|335296199|ref|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sus scrofa]
Length = 399
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 117/200 (58%), Gaps = 28/200 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
S + E+ + P Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SALCCNENEADHLDRDQQPYPPS------QKTKRMRTSFKHHQLRTMKSYFAINHNP 294
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 295 DAKDLKQLAQKTGLTKRVLQ 314
>gi|327277798|ref|XP_003223650.1| PREDICTED: LIM/homeobox protein Lhx9-like, partial [Anolis
carolinensis]
Length = 279
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 119/211 (56%), Gaps = 44/211 (20%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +
Sbjct: 12 LGISASEMVMRARDSVYHLSCFTCTTCHKTLTTGDHFGMKDSVVYCRAHFESLLQQQGAD 71
Query: 61 SAEIEQPMS-------------PRPAPWQPTTVQKGRPRKRK---LSVDSPTPPSEDINA 104
+A PMS P TVQKGRPRKRK L VD
Sbjct: 72 AAFPAPPMSYTELAAKGGPGGLALPYFNGAGTVQKGRPRKRKSPALGVD----------- 120
Query: 105 NVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRT 164
L +SG + + L + P S Q+TKRMRTSFKHHQLRT
Sbjct: 121 ---------LVAYNSGCNENDADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRT 163
Query: 165 MKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
MKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 164 MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 194
>gi|62955397|ref|NP_001017710.1| LIM/homeobox protein Lhx9 isoform 1 [Danio rerio]
gi|62205415|gb|AAH93258.1| LIM homeobox 9 [Danio rerio]
Length = 330
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 116/201 (57%), Gaps = 30/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFETLIQGEYHP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
AE+ P+ TVQKGRPRKRK P+ I+
Sbjct: 198 QLNYAELAAKGGGLALPYFNGTGTVQKGRPRKRK-------SPAMGIDI----------- 239
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
G SS + + P Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 240 ----GSYSSGCNENDADHLDRDQQP---YPPSQKTKRMRTSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQN 196
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQG 313
>gi|124246799|gb|ABE65382.2| putative LIM homeodomain protein [Trachemys scripta]
Length = 235
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 10 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFETLLQGEYPP 69
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + ++ N
Sbjct: 70 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVSYN---------- 115
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 116 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 164
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 165 DAKDLKQLAQKTGLTKRVLQ 184
>gi|326924940|ref|XP_003208680.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Meleagris
gallopavo]
Length = 338
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 79 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPP 138
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 139 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 184
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + + + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 185 ---SGCNENEADHMDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 233
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 234 DAKDLKQLAQKTGLTKRVLQ 253
>gi|326924942|ref|XP_003208681.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Meleagris
gallopavo]
Length = 271
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 79 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPP 138
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 139 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 184
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + + + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 185 ---SGCNENEADHMDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 233
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 234 DAKDLKQLAQKTGLTKRVLQ 253
>gi|311213854|ref|NP_001185656.1| LIM homeobox 9 [Taeniopygia guttata]
Length = 378
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + ++ N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGAGTVQKGRPRKRK----SPALGVDIVSYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 273
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 DAKDLKQLAQKTGLTKRVLQ 293
>gi|82524343|ref|NP_001032320.1| LIM/homeobox protein Lhx9 isoform 2 [Danio rerio]
gi|76667071|dbj|BAE45355.1| LIM homeodomain type transcription factor Lhx9 [Danio rerio]
Length = 395
Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 115/199 (57%), Gaps = 29/199 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFETLIQGEYHP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM 116
AE+ P+ T +KGRPRKRK P+ I+
Sbjct: 198 QLNYAELAAKAGGLALPYFNGTGTRKGRPRKRK-------SPAMGIDI------------ 238
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
G SS + + P Q+TKRMRTSFKHHQLRTMKSYF IN NPD
Sbjct: 239 ---GSYSSGCNENDADHLDRDQQP---YPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPD 292
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
AKDLKQLAQKTGL+KRVLQ
Sbjct: 293 AKDLKQLAQKTGLTKRVLQ 311
>gi|432854590|ref|XP_004067976.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Oryzias latipes]
Length = 378
Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 122/201 (60%), Gaps = 31/201 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL-RHRDY- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L + DY
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFETLVQGPDYH 178
Query: 59 --CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
AE+ P+ T QKGRPRKRK P+ I+ IPS
Sbjct: 179 PQLNFAELAAKGGGLALPYFNGTGTTQKGRPRKRK-------SPAMGID-----IPS--- 223
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQN 174
++G + + L + A + Q+TKRMRTSFKHHQLRTMKSYF IN N
Sbjct: 224 --YNTGCNENDTDHLDRDQQAYPPT--------QKTKRMRTSFKHHQLRTMKSYFAINHN 273
Query: 175 PDAKDLKQLAQKTGLSKRVLQ 195
PDAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 PDAKDLKQLAQKTGLTKRVLQ 294
>gi|348536381|ref|XP_003455675.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Oreochromis
niloticus]
Length = 399
Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 122/201 (60%), Gaps = 31/201 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL-RHRDY- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L + DY
Sbjct: 140 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFETLVQGPDYH 199
Query: 59 --CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
AE+ P+ T QKGRPRKRK P+ I+ IPS
Sbjct: 200 PQLNFAELAAKGGGLTLPYFNGTGTAQKGRPRKRK-------SPAMGID-----IPS--- 244
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQN 174
++G + + L + A + Q+TKRMRTSFKHHQLRTMKSYF IN N
Sbjct: 245 --YNTGCNENDTDHLDRDQQAYPPT--------QKTKRMRTSFKHHQLRTMKSYFAINHN 294
Query: 175 PDAKDLKQLAQKTGLSKRVLQ 195
PDAKDLKQLAQKTGL+KRVLQ
Sbjct: 295 PDAKDLKQLAQKTGLTKRVLQ 315
>gi|46276325|gb|AAS86421.1| lhx9 [Oryzias latipes]
Length = 237
Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 121/201 (60%), Gaps = 31/201 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR-DY- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L DY
Sbjct: 53 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFETLVQGPDYH 112
Query: 59 --CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
AE+ P+ T QKGRPRKRK P+ I+ IPS
Sbjct: 113 PQLNFAELAAKGGGLALPYFNGTGTTQKGRPRKRK-------SPAMGID-----IPS--- 157
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQN 174
++G + + L + A + Q+TKRMRTSFKHHQLRTMKSYF IN N
Sbjct: 158 --YNTGCNENDTDHLDRDQQAYPPT--------QKTKRMRTSFKHHQLRTMKSYFAINHN 207
Query: 175 PDAKDLKQLAQKTGLSKRVLQ 195
PDAKDLKQLAQKTGL+KRVLQ
Sbjct: 208 PDAKDLKQLAQKTGLTKRVLQ 228
>gi|348536385|ref|XP_003455677.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Oreochromis
niloticus]
Length = 320
Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 121/201 (60%), Gaps = 31/201 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR-DY- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L DY
Sbjct: 139 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFETLVQGPDYH 198
Query: 59 --CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
AE+ P+ T QKGRPRKRK P+ I+ IPS
Sbjct: 199 PQLNFAELAAKGGGLTLPYFNGTGTAQKGRPRKRK-------SPAMGID-----IPS--- 243
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQN 174
++G + + L + A + Q+TKRMRTSFKHHQLRTMKSYF IN N
Sbjct: 244 --YNTGCNENDTDHLDRDQQAYPPT--------QKTKRMRTSFKHHQLRTMKSYFAINHN 293
Query: 175 PDAKDLKQLAQKTGLSKRVLQ 195
PDAKDLKQLAQKTGL+KRVLQ
Sbjct: 294 PDAKDLKQLAQKTGLTKRVLQ 314
>gi|348536383|ref|XP_003455676.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Oreochromis
niloticus]
Length = 333
Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 121/202 (59%), Gaps = 31/202 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR-DY- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L DY
Sbjct: 140 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFETLVQGPDYH 199
Query: 59 --CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
AE+ P+ T QKGRPRKRK P+ I+ IPS
Sbjct: 200 PQLNFAELAAKGGGLTLPYFNGTGTAQKGRPRKRK-------SPAMGID-----IPS--- 244
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQN 174
++G + + L + A + Q+TKRMRTSFKHHQLRTMKSYF IN N
Sbjct: 245 --YNTGCNENDTDHLDRDQQAYPPT--------QKTKRMRTSFKHHQLRTMKSYFAINHN 294
Query: 175 PDAKDLKQLAQKTGLSKRVLQN 196
PDAKDLKQLAQKTGL+KRVLQ
Sbjct: 295 PDAKDLKQLAQKTGLTKRVLQG 316
>gi|432092293|gb|ELK24915.1| LIM/homeobox protein Lhx9, partial [Myotis davidii]
Length = 420
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 119/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C L GD FGM+D ++YCR H+E L H ++
Sbjct: 79 LGISASEMVMRARDAVYHLSCFTCSTCSKTLATGDHFGMKDGLVYCRAHFESLLHGEFPA 138
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N +
Sbjct: 139 PLSYTELAAKGGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYS---------- 184
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 185 ---SGCNENEADPLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 233
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 234 DAKDLKQLAQKTGLTKRVLQ 253
>gi|432854592|ref|XP_004067977.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Oryzias latipes]
Length = 380
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 121/201 (60%), Gaps = 29/201 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL-RHRDY- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L + DY
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFETLVQGPDYH 178
Query: 59 --CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
AE+ P+ T QKGRPRKRK P+ I+ IPS
Sbjct: 179 PQLNFAELAAKGGGLALPYFNGTGTTQKGRPRKRK-------SPAMGID-----IPS--- 223
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQN 174
++ L + + + P + Q+TKRMRTSFKHHQLRTMKSYF IN N
Sbjct: 224 ---YNTALRCNENDTDHLDRDQQAYPPT-----QKTKRMRTSFKHHQLRTMKSYFAINHN 275
Query: 175 PDAKDLKQLAQKTGLSKRVLQ 195
PDAKDLKQLAQKTGL+KRVLQ
Sbjct: 276 PDAKDLKQLAQKTGLTKRVLQ 296
>gi|410921836|ref|XP_003974389.1| PREDICTED: LIM/homeobox protein Lhx9-like [Takifugu rubripes]
Length = 506
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 120/201 (59%), Gaps = 31/201 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL-RHRDYC 59
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L + DY
Sbjct: 247 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFETLVQGPDYH 306
Query: 60 GS---AEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
AE+ P+ T QKGRPRKRK P+ I+ +
Sbjct: 307 AQLNFAELAAKGGGLSLPYFNGTGTAQKGRPRKRK-------SPAMGID----------I 349
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQN 174
++G + + L + A + Q+TKRMRTSFKHHQLRTMKSYF IN N
Sbjct: 350 SSYNTGCNENDTDHLDRDQQAYPPT--------QKTKRMRTSFKHHQLRTMKSYFAINHN 401
Query: 175 PDAKDLKQLAQKTGLSKRVLQ 195
PDAKDLKQLAQKTGL+KRVLQ
Sbjct: 402 PDAKDLKQLAQKTGLTKRVLQ 422
>gi|290753132|dbj|BAI79511.1| apterous [Pedetontus unimaculatus]
Length = 222
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 120/215 (55%), Gaps = 43/215 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
ISSSELVMRARD VFH+ CFTC++C + LTKGD FGM++ ++CR HYE+ +
Sbjct: 24 AISSSELVMRARDHVFHVPCFTCVTCNVALTKGDHFGMQENAVFCRLHYEMAMSTSVAAT 83
Query: 62 AEIEQ-----PMSPRPA------PWQPT----------TVQKGRPRKRKLSVDSPTPPSE 100
+ P+ P PA P + T QKGRPRKRK
Sbjct: 84 SPGPALPGGFPVYPPPATDFGALPHEGVGKVHFYNGVRTGQKGRPRKRK----------- 132
Query: 101 DINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHH 160
P M + DL++ + L G S G++ QRTKRMRTSFKHH
Sbjct: 133 ---------PKDLESMTANLDLNA--DYLDTFGAPGPSPTLPGLNGQQRTKRMRTSFKHH 181
Query: 161 QLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
QLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 182 QLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 216
>gi|45382197|ref|NP_990757.1| LIM/homeobox protein Lhx9 [Gallus gallus]
gi|556038|gb|AAA50258.1| homeobox protein [Gallus gallus]
Length = 378
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 118/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 224
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + + + P S Q+TKRM TSFKHHQLRTMKSYF IN NP
Sbjct: 225 ---SGCNENEADHMDRDQ---QPYPPS-----QKTKRMATSFKHHQLRTMKSYFAINHNP 273
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 274 DAKDLKQLAQKTGLTKRVLQ 293
>gi|47217395|emb|CAG00755.1| unnamed protein product [Tetraodon nigroviridis]
Length = 343
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 121/201 (60%), Gaps = 31/201 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE-ILRHRDY- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E +++ DY
Sbjct: 79 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFESLVQGPDYH 138
Query: 59 --CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
AE+ P P+ T QKGRPRKRK P+ I+ +
Sbjct: 139 AQLNFAELAAKGGGLPLPYFNGTGTAQKGRPRKRK-------SPAMGID----------I 181
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQN 174
+G + + L + A + Q+TKRMRTSFKHHQLRTMKSYF IN N
Sbjct: 182 SGYSTGCNENDTDHLDRDQQAYPPT--------QKTKRMRTSFKHHQLRTMKSYFAINHN 233
Query: 175 PDAKDLKQLAQKTGLSKRVLQ 195
PDAKDLKQLAQKTGL+KRVLQ
Sbjct: 234 PDAKDLKQLAQKTGLTKRVLQ 254
>gi|4809142|gb|AAD30110.1|AF134761_1 LIM-homeodomain type transcription factor Lhx9 [Mus musculus]
Length = 300
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 116/197 (58%), Gaps = 30/197 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 234
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 235 ---SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNP 283
Query: 176 DAKDLKQLAQKTGLSKR 192
DAKDLKQLAQKTGL+KR
Sbjct: 284 DAKDLKQLAQKTGLTKR 300
>gi|444707251|gb|ELW48535.1| LIM/homeobox protein Lhx2 [Tupaia chinensis]
Length = 442
Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 131/228 (57%), Gaps = 33/228 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYRP 179
Query: 59 -----------------------CGSAEIEQPMSPRPAP-WQPTTV--QKGRPRKRKLSV 92
C + + P P W+PTT+ Q RP + +++
Sbjct: 180 RVLGWAQQEPTRWVCPTTMAWALCRRGDRGSARAQAPGPIWRPTTLGAQPRRPLAKSVAL 239
Query: 93 -DSPTPPSED-INANVMRIPSTTLEMLH--SGDLSSSMESLSY-ESGAGNSSPGSGVHSH 147
DSP I ++ E++ + L + +LS E+ A + S
Sbjct: 240 GDSPAEERRRFITGRWVKGGIGVWEVVRKFTCCLCVASPALSCNENDAEHLDRDQPYPSS 299
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 300 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 347
>gi|224493175|sp|Q90881.2|LHX9_CHICK RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 118/200 (59%), Gaps = 30/200 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN---------- 243
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
SG + + + + P S Q+TKRM TSFKHHQLRTMKSYF IN NP
Sbjct: 244 ---SGCNENEADHMDRDQ---QPYPPS-----QKTKRMATSFKHHQLRTMKSYFAINHNP 292
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 DAKDLKQLAQKTGLTKRVLQ 312
>gi|148224455|ref|NP_001087527.1| LIM/homeobox protein Lhx9 [Xenopus laevis]
gi|82198794|sp|Q68EY3.1|LHX9_XENLA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|51258697|gb|AAH80067.1| Lhx9 protein [Xenopus laevis]
Length = 331
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 121/202 (59%), Gaps = 34/202 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++YCR H+E+L D+
Sbjct: 139 LGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENLVYCRIHFELLVQGDFHQ 198
Query: 59 -CGSAEIEQPMSPRPA-PWQPT---TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
E+ A P+ TVQKGRPRKRK SP + ++M S
Sbjct: 199 QLNYTELSAKGGGIAALPYFSNGTGTVQKGRPRKRK----SPA-----LGVDIMNYSSGC 249
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
E + DL + P S Q+TKRMRTSFKHHQLRTMKSYF IN
Sbjct: 250 NE--NETDLDRD-----------QTYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINH 291
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 292 NPDAKDLKQLAQKTGLTKRVLQ 313
>gi|215276334|gb|ACJ65031.1| LHX9 [Xenopus laevis]
Length = 399
Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 120/202 (59%), Gaps = 34/202 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++YCR H+E+L D+
Sbjct: 140 LGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENLVYCRIHFELLVQGDFHQ 199
Query: 59 -CGSAEIEQPMSPRPA-PWQPT---TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
E+ A P+ TVQKGRPRKRK S + ++M S
Sbjct: 200 QLNYTELSAKGGGIAALPYFSNGTGTVQKGRPRKRK---------SPALGVDIMNYSSGC 250
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
E + DL + P S Q+TKRMRTSFKHHQLRTMKSYF IN
Sbjct: 251 NE--NETDLDRD-----------QTYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINH 292
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 293 NPDAKDLKQLAQKTGLTKRVLQ 314
>gi|301605176|ref|XP_002932201.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 398
Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 119/202 (58%), Gaps = 34/202 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++YCR H+E+L D+
Sbjct: 139 LGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHFELLVQGDFHQ 198
Query: 59 -CGSAEIEQP---MSPRPAPWQPT-TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
E+ ++ P T TVQKGRPRKRK SP + IN
Sbjct: 199 QLNYTELSAKGGGIATLPYFSNGTGTVQKGRPRKRK----SPALGVDIIN---------- 244
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
SS + + P S Q+TKRMRTSFKHHQLRTMKSYF IN
Sbjct: 245 --------YSSGCNENETDLDRDQTYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINH 291
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 292 NPDAKDLKQLAQKTGLTKRVLQ 313
>gi|345132129|gb|AEN75257.1| apterous [Neanthes arenaceodentata]
Length = 420
Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 117/215 (54%), Gaps = 37/215 (17%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
IS++ELVMRAR+ VFH+ CFTC SC LT GD FGM+D +IYCR HYE + + GS
Sbjct: 129 AISANELVMRAREHVFHIGCFTCASCSKALTTGDYFGMKDHLIYCRSHYEHIMQGAFIGS 188
Query: 62 AEIEQ-----PMSPRPAPWQPT--------------TVQKGRPRKRKLSVDSPTPPSEDI 102
PMSP +P P T QKGRPRKRK SP P S+
Sbjct: 189 PPPPSLSHGGPMSPCLSPGPPGPPPGGPMSFYNGVGTTQKGRPRKRK----SPMPESDPC 244
Query: 103 NANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSS--PGSGVHSHQRTKRMRTSFKHH 160
A L + M E G PG R KR+RTSFKHH
Sbjct: 245 LA------------LDDCSIYFCMAPNENEMSMGQDGVYPGPPTGQPPRQKRVRTSFKHH 292
Query: 161 QLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
QLRTMKSYF +N NPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 293 QLRTMKSYFALNHNPDAKDLKQLAQKTGLSKRVLQ 327
>gi|301605174|ref|XP_002932200.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 331
Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 119/203 (58%), Gaps = 34/203 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++YCR H+E+L D+
Sbjct: 139 LGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHFELLVQGDFHQ 198
Query: 59 -CGSAEIEQP---MSPRPAPWQPT-TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
E+ ++ P T TVQKGRPRKRK SP + IN
Sbjct: 199 QLNYTELSAKGGGIATLPYFSNGTGTVQKGRPRKRK----SPALGVDIIN---------- 244
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
SS + + P S Q+TKRMRTSFKHHQLRTMKSYF IN
Sbjct: 245 --------YSSGCNENETDLDRDQTYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINH 291
Query: 174 NPDAKDLKQLAQKTGLSKRVLQN 196
NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 292 NPDAKDLKQLAQKTGLTKRVLQG 314
>gi|56185681|gb|AAV84105.1| apterous [Euprymna scolopes]
Length = 423
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 122/197 (61%), Gaps = 28/197 (14%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
MGI S++LVMRAR+ V+HL CFTC +C L GD FG+R+ ++YC+ HYE H +Y
Sbjct: 159 MGIQSTDLVMRARNHVYHLTCFTCFTCNKALQAGDTFGLREHLVYCQVHYENSYHAEY-- 216
Query: 61 SAEIEQPMSPRPAPWQPT--TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
+ M+ P+ T+QKGRPRKR+ SP S++ N+ + + +L+
Sbjct: 217 -IALSPDMNAGQMPYYNGVGTLQKGRPRKRR----SPNISSDEFAHNIG-LGADSLDR-- 268
Query: 119 SGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
+GD+ ++ +Y++ R KRMRTSFKHHQLRT+KSYF +N NP AK
Sbjct: 269 AGDM---IDRDTYQNAP-------------RQKRMRTSFKHHQLRTLKSYFAVNHNPGAK 312
Query: 179 DLKQLAQKTGLSKRVLQ 195
DLK LAQKTGL+KRVLQ
Sbjct: 313 DLKHLAQKTGLTKRVLQ 329
>gi|351702111|gb|EHB05030.1| LIM/homeobox protein Lhx2 [Heterocephalus glaber]
Length = 502
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 116/197 (58%), Gaps = 23/197 (11%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 232 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY-- 289
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPT--PPSEDINANVMRIPSTTLEMLH 118
A + R + +GR + PT S + + + +P +
Sbjct: 290 PAHFNHALCRRGGRGSARALARGR-------IWQPTMLARSLAFSGSFLLVPRACWALSC 342
Query: 119 SGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
+ E+ A + S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAK
Sbjct: 343 N------------ENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 390
Query: 179 DLKQLAQKTGLSKRVLQ 195
DLKQLAQKTGL+KRVLQ
Sbjct: 391 DLKQLAQKTGLTKRVLQ 407
>gi|391341454|ref|XP_003745045.1| PREDICTED: LIM/homeobox protein Lhx9-like [Metaseiulus
occidentalis]
Length = 343
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 118/204 (57%), Gaps = 19/204 (9%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GI S+ELVMR RD V+H HCFTC C I L++GD FG+RD+++YC HY +
Sbjct: 92 IGIFSTELVMRVRDYVYHTHCFTCAWCNIPLSRGDTFGVRDQLVYCSLHYGAI------- 144
Query: 61 SAEIEQPMSPRPAPW------QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
SAE + S PA P + Q+ P + L P++ +I S
Sbjct: 145 SAEGDLTTSLGPATEFEDIHETPISPQQYSPNQSPLQQQQQQQPAKKGRPRKRKIESEHE 204
Query: 115 EMLHSGDLSSSME---SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNI 171
G + + +LS S G+ SG QRTKRMRTSFKHHQLRTMK+YF I
Sbjct: 205 LQTLQGQMECQVSPGGALSPLSSLGDKLQLSG---QQRTKRMRTSFKHHQLRTMKTYFGI 261
Query: 172 NQNPDAKDLKQLAQKTGLSKRVLQ 195
NQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 262 NQNPDAKDLKQLAQKTGLSKRVLQ 285
>gi|224994808|ref|NP_001139341.1| apterous a [Tribolium castaneum]
gi|224459212|gb|ACN43341.1| apterous a [Tribolium castaneum]
Length = 465
Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 121/221 (54%), Gaps = 53/221 (23%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI---------- 52
I SSELVMRARDLVFH+HCF+C C LTKGD FGMRD + CR H+E+
Sbjct: 199 IISSELVMRARDLVFHVHCFSCAVCNSPLTKGDHFGMRDGAVLCRLHFEMPVTEPLPPGM 258
Query: 53 ----LRHRDYCGSAEIEQPMSPRPAPWQ-----------PTTV-QKGRPRKRKLSVDSPT 96
+ H + P P P + PTT QKGRPRKRK
Sbjct: 259 FPPGMHHYPPPFPSPEFHHQIPPPTPVESIGKVPFFNGAPTTPRQKGRPRKRK------- 311
Query: 97 PPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGS-GVH-SHQRTKRMR 154
P M + DL+S +S+ SPG+ G+H S QRTKRMR
Sbjct: 312 -------------PKDLEGMTANLDLNSDYLDMSF-----GRSPGTPGMHGSSQRTKRMR 353
Query: 155 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 354 TSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 394
>gi|149058480|gb|EDM09637.1| LIM homeobox 9, isoform CRA_e [Rattus norvegicus]
Length = 171
Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 112/193 (58%), Gaps = 30/193 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY---CGSAEI 64
+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y E+
Sbjct: 1 MVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTEL 60
Query: 65 EQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
P+ TVQKGRPRKRK SP + +N N SG
Sbjct: 61 AAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN-------------SGCN 103
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQ
Sbjct: 104 ENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 155
Query: 183 LAQKTGLSKRVLQ 195
LAQKTGL+KRVLQ
Sbjct: 156 LAQKTGLTKRVLQ 168
>gi|170048222|ref|XP_001870660.1| lim homeobox protein [Culex quinquefasciatus]
gi|167870354|gb|EDS33737.1| lim homeobox protein [Culex quinquefasciatus]
Length = 338
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 130/232 (56%), Gaps = 45/232 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY--------EIL 53
GI++SELVMRA+DL+FH++CF+C CG LL GD G+R+ ++C HY E +
Sbjct: 22 GINASELVMRAKDLIFHVNCFSCAICGQLLRGGDTAGIREGRLFCGEHYDTDVLSEPETI 81
Query: 54 RHRDYC--------------GSAEIEQPMSPRPAPWQPTTVQKGRPRKRK---------- 89
+ Y G E Q QKGRPRKRK
Sbjct: 82 SSQFYPGGGGGTPGRGGAEPGDGPAELQPLQPHQQQQQQHSQKGRPRKRKPIAQLLDGGQ 141
Query: 90 --LSVDSPTPPSEDINANVMRIPST--TLEMLHSGDLSSSMESLSYESGAGNSSPGSG-- 143
S+ + PP + + P T L++LH SS++ SY+ G+ SPGSG
Sbjct: 142 QQGSLQNQPPPQQHDGLD----PGTPLRLDLLHKELSVSSLDLSSYD---GSQSPGSGGT 194
Query: 144 VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+ + RTKRMRTSFKHHQLRTMKSYF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 195 LTPNCRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQ 246
>gi|149058477|gb|EDM09634.1| LIM homeobox 9, isoform CRA_c [Rattus norvegicus]
Length = 186
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 112/193 (58%), Gaps = 30/193 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY---CGSAEI 64
+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y E+
Sbjct: 1 MVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTEL 60
Query: 65 EQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
P+ TVQKGRPRKRK SP + +N N SG
Sbjct: 61 AAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN-------------SGCN 103
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQ
Sbjct: 104 ENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 155
Query: 183 LAQKTGLSKRVLQ 195
LAQKTGL+KRVLQ
Sbjct: 156 LAQKTGLTKRVLQ 168
>gi|426240153|ref|XP_004013978.1| PREDICTED: LIM/homeobox protein Lhx9 [Ovis aries]
Length = 393
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/205 (47%), Positives = 116/205 (56%), Gaps = 35/205 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YC + L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCSTPLQTLLQGEYPP 188
Query: 59 ------CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
E+ P+ TVQKGRPRKRK SP + +N N
Sbjct: 189 GEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK----SPALGVDIVNYN----- 239
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
SG + + L + P S Q+TKRMRTSFKHHQLRTMKSYF
Sbjct: 240 --------SGCNENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFA 283
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 284 INHNPDAKDLKQLAQKTGLTKRVLQ 308
>gi|321454678|gb|EFX65839.1| hypothetical protein DAPPUDRAFT_65174 [Daphnia pulex]
Length = 291
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/205 (47%), Positives = 115/205 (56%), Gaps = 33/205 (16%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD----Y 58
+ S+ELVMRARD VFHL CFTC +C L KGD+FGMRD ++YCR HYE+L+H +
Sbjct: 87 LGSNELVMRARDAVFHLACFTCAACNQPLAKGDIFGMRDGIVYCRLHYEMLQHPSTLTFF 146
Query: 59 CGSAEIEQPMSPRPAPWQPT--------TVQKGRPRKRKLSVDSPTPPSEDINANVMRIP 110
+ + P +VQKGRPRKRK+ P
Sbjct: 147 PSLSSSGGLSNGGLGGNSPGSGSLGHHHSVQKGRPRKRKIP------------------P 188
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
+ M++ ++ S S QRTKRMRTSFKHHQLRTMKSYF
Sbjct: 189 AAAAGMVYDSSGTNGSASGGGGG---GGSSSQQQQQQQRTKRMRTSFKHHQLRTMKSYFA 245
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 246 INQNPDAKDLKQLAQKTGLSKRVLQ 270
>gi|260794979|ref|XP_002592484.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277704|gb|EEN48495.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 330
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 114/197 (57%), Gaps = 34/197 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE-ILRHRDYC 59
+GI++ E+VMRARD V+HL CFTC++C LT GD FGM+ IYCR HYE +R
Sbjct: 82 LGITAREMVMRARDSVYHLACFTCVTCDKALTTGDEFGMQGSAIYCRYHYETFMRSEGRY 141
Query: 60 GSAEIEQPMSPRPAPWQPTTVQ-KGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
G+A +P+ P P V +GRPRKR S + P N N + +
Sbjct: 142 GAAMGSKPLPHSPYYHSPGGVSYRGRPRKRGDSDSYCSVPGSSDNENDLDL--------- 192
Query: 119 SGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
+G G ++ +TKR+RTSFKHHQLRT+KSYF IN NPD+K
Sbjct: 193 --------------NGHGGAT---------KTKRIRTSFKHHQLRTLKSYFAINHNPDSK 229
Query: 179 DLKQLAQKTGLSKRVLQ 195
DL+QLAQKTGL+KRVLQ
Sbjct: 230 DLQQLAQKTGLTKRVLQ 246
>gi|195353746|ref|XP_002043364.1| GM16501 [Drosophila sechellia]
gi|194127487|gb|EDW49530.1| GM16501 [Drosophila sechellia]
Length = 535
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 117/231 (50%), Gaps = 73/231 (31%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD----- 57
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D
Sbjct: 283 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSS 342
Query: 58 ----YCGSAEIEQPMS-----------------------------PRPAPWQPTTVQKGR 84
Y SA+ P + P+PA QKGR
Sbjct: 343 MSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPA------RQKGR 396
Query: 85 PRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
PRKRK +DI A I DL++ GS +
Sbjct: 397 PRKRK---------PKDIEAFTANI-----------DLNTEYVDFGR---------GSHL 427
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 428 SSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 478
>gi|124377602|dbj|BAF46218.1| LIM homeobox gene 9 gamma protein [Glandirana rugosa]
Length = 331
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 116/202 (57%), Gaps = 34/202 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++Y R H+E+L D+
Sbjct: 120 LGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHFELLVQGDFHS 179
Query: 61 SAEIEQ------PMSPRPAPWQPT-TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
+ +S P T VQKGRPRKRK SP + IN
Sbjct: 180 QLNYTELSAKGGGLSALPYFTNGTGAVQKGRPRKRK----SPALGVDIIN---------- 225
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
+S + S P S Q+TKRMRTSFKHHQLRTMKSYF IN
Sbjct: 226 --------YTSGCNENDTDLDRDQSYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINH 272
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDL+QLAQKTGL+KRVLQ
Sbjct: 273 NPDAKDLRQLAQKTGLTKRVLQ 294
>gi|224493106|sp|A2PZF9.1|LHX9_RANRU RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|124377598|dbj|BAF46216.1| LIM homeobox gene 9 alpha protein [Glandirana rugosa]
Length = 379
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 117/202 (57%), Gaps = 34/202 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++Y R H+E+L D+
Sbjct: 120 LGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHFELLVQGDFHS 179
Query: 61 SAEIEQ------PMSPRPAPWQPT-TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
+ +S P T VQKGRPRKRK S + +++ S
Sbjct: 180 QLNYTELSAKGGGLSALPYFTNGTGAVQKGRPRKRK---------SPALGVDIINYTSGC 230
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
E + DL S P S Q+TKRMRTSFKHHQLRT KSYF IN
Sbjct: 231 NE--NDTDLDRD-----------QSYPPS-----QKTKRMRTSFKHHQLRTTKSYFAINH 272
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 273 NPDAKDLKQLAQKTGLTKRVLQ 294
>gi|195475694|ref|XP_002090119.1| GE19443 [Drosophila yakuba]
gi|194176220|gb|EDW89831.1| GE19443 [Drosophila yakuba]
Length = 469
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 117/231 (50%), Gaps = 73/231 (31%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD----- 57
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D
Sbjct: 217 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRSHYSIAREGDTASSS 276
Query: 58 ----YCGSAEIEQPMS-----------------------------PRPAPWQPTTVQKGR 84
Y SA+ P + P+PA QKGR
Sbjct: 277 MSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPA------RQKGR 330
Query: 85 PRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
PRKRK +DI A I DL++ GS +
Sbjct: 331 PRKRK---------PKDIEAFTANI-----------DLNTEYVDFGR---------GSHL 361
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 362 SSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 412
>gi|24585889|ref|NP_724428.1| apterous, isoform A [Drosophila melanogaster]
gi|195580840|ref|XP_002080242.1| GD10352 [Drosophila simulans]
gi|231559|sp|P29673.1|APTE_DROME RecName: Full=Protein apterous
gi|7601|emb|CAA46276.1| developmental regulatory protein [Drosophila melanogaster]
gi|157822|gb|AAA28673.1| LIM-homeodomain apterous protein [Drosophila melanogaster]
gi|7302219|gb|AAF57314.1| apterous, isoform A [Drosophila melanogaster]
gi|28912908|gb|AAO61758.1| HL02012p [Drosophila melanogaster]
gi|194192251|gb|EDX05827.1| GD10352 [Drosophila simulans]
gi|220942502|gb|ACL83794.1| ap-PA [synthetic construct]
gi|220952712|gb|ACL88899.1| ap-PA [synthetic construct]
Length = 469
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 117/231 (50%), Gaps = 73/231 (31%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD----- 57
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D
Sbjct: 217 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSS 276
Query: 58 ----YCGSAEIEQPMS-----------------------------PRPAPWQPTTVQKGR 84
Y SA+ P + P+PA QKGR
Sbjct: 277 MSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPA------RQKGR 330
Query: 85 PRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
PRKRK +DI A I DL++ GS +
Sbjct: 331 PRKRK---------PKDIEAFTANI-----------DLNTEYVDFGR---------GSHL 361
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 362 SSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 412
>gi|194864184|ref|XP_001970812.1| ap [Drosophila erecta]
gi|190662679|gb|EDV59871.1| ap [Drosophila erecta]
Length = 469
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 117/231 (50%), Gaps = 73/231 (31%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD----- 57
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D
Sbjct: 217 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSS 276
Query: 58 ----YCGSAEIEQPMS-----------------------------PRPAPWQPTTVQKGR 84
Y SA+ P + P+PA QKGR
Sbjct: 277 MSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPA------RQKGR 330
Query: 85 PRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
PRKRK +DI A I DL++ GS +
Sbjct: 331 PRKRK---------PKDIEAFTANI-----------DLNTEYVDFGR---------GSHL 361
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 362 SSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 412
>gi|281360182|ref|NP_001163058.1| apterous, isoform C [Drosophila melanogaster]
gi|17862966|gb|AAL39960.1| SD05618p [Drosophila melanogaster]
gi|272432345|gb|ACZ94338.1| apterous, isoform C [Drosophila melanogaster]
Length = 468
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 117/231 (50%), Gaps = 73/231 (31%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD----- 57
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D
Sbjct: 216 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSS 275
Query: 58 ----YCGSAEIEQPMS-----------------------------PRPAPWQPTTVQKGR 84
Y SA+ P + P+PA QKGR
Sbjct: 276 MSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPA------RQKGR 329
Query: 85 PRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
PRKRK +DI A I DL++ GS +
Sbjct: 330 PRKRK---------PKDIEAFTANI-----------DLNTEYVDFGR---------GSHL 360
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 361 SSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 411
>gi|157119548|ref|XP_001659418.1| lim homeobox protein [Aedes aegypti]
gi|108875286|gb|EAT39511.1| AAEL008685-PA [Aedes aegypti]
Length = 345
Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 117/197 (59%), Gaps = 16/197 (8%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS+SELVMRA+DL+FH++CF+C CG LL GD G+RD I+C HY+ +
Sbjct: 84 GISASELVMRAKDLIFHVNCFSCTICGQLLRGGDTAGIRDGRIFCGEHYD---------T 134
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN-VMRIPSTTLEMLHSG 120
+ M+P + RK L + P AN V+ T +
Sbjct: 135 DVLSINMTPDYGSCPDVNPYRHLFRKVLLGGN----PMARFGANKVVHRLGTIRKTRIPL 190
Query: 121 DLSSSMESLSYESGAGNSSPGSG--VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
+++ SL S G+ SPGSG + + RTKRMRTSFKHHQLRTMKSYF INQNPDAK
Sbjct: 191 AMTAGPSSLDLSSYDGSQSPGSGGTLTPNCRTKRMRTSFKHHQLRTMKSYFAINQNPDAK 250
Query: 179 DLKQLAQKTGLSKRVLQ 195
DLKQLAQKTGLSKRVLQ
Sbjct: 251 DLKQLAQKTGLSKRVLQ 267
>gi|125810912|ref|XP_001361667.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|195154388|ref|XP_002018104.1| GL16944 [Drosophila persimilis]
gi|27374288|gb|AAO01041.1| ap-PA [Drosophila pseudoobscura]
gi|54636843|gb|EAL26246.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|194113900|gb|EDW35943.1| GL16944 [Drosophila persimilis]
Length = 469
Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 118/231 (51%), Gaps = 73/231 (31%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD----- 57
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D
Sbjct: 217 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDAASSS 276
Query: 58 ----YCGSAEIEQPMS-----------------------------PRPAPWQPTTVQKGR 84
Y S++ P + P+PA QKGR
Sbjct: 277 MSATYPYSSQFGSPHNDSSSPHSDPSRSIVPTGIFVPTSHVITGLPQPA------RQKGR 330
Query: 85 PRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
PRKRK +DI A I DL++ S G+SS
Sbjct: 331 PRKRK---------PKDIEAFTANI-----------DLNTEYVDFGRGSHMGSSS----- 365
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 366 ----RTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 412
>gi|124377604|dbj|BAF46219.1| LIM homeobox gene 9 delta protein [Glandirana rugosa]
Length = 312
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 114/202 (56%), Gaps = 34/202 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRAR+ V+HL CFTC C L+ GD FGM++ ++Y R H+E+L D+
Sbjct: 120 LGISASEIVMRARESVYHLSCFTCTXCNKTLSTGDHFGMKENLVYRRAHFELLVQGDFHS 179
Query: 61 SAEIEQ------PMSPRPAPWQPT-TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
+ +S P T VQKGRPRKRK SP + IN
Sbjct: 180 QLNYTELSAKGGGLSALPYFTNGTGAVQKGRPRKRK----SPALGVDIIN---------- 225
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
+S + S P S Q+TKRMRTSFKHHQLRT KSYF IN
Sbjct: 226 --------YTSGCNENDTDLDRDQSYPPS-----QKTKRMRTSFKHHQLRTTKSYFAINH 272
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 273 NPDAKDLKQLAQKTGLTKRVLQ 294
>gi|124377600|dbj|BAF46217.1| LIM homeobox gene 9 beta protein [Glandirana rugosa]
Length = 347
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 115/202 (56%), Gaps = 34/202 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++Y R H+E+L D+
Sbjct: 120 LGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHFELLVQGDFHS 179
Query: 61 SAEIEQ------PMSPRPAPWQPT-TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
+ +S P T VQKGRPRKRK SP + IN
Sbjct: 180 QLNYTELSAKGGGLSALPYFTNGTGAVQKGRPRKRK----SPALGVDIIN---------- 225
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
+S + S P S Q+TKRMRTSFKHHQLRT KSYF IN
Sbjct: 226 --------YTSGCNENDTDLDRDQSYPPS-----QKTKRMRTSFKHHQLRTTKSYFAINH 272
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 273 NPDAKDLKQLAQKTGLTKRVLQ 294
>gi|13509267|emb|CAC35214.1| Lhx9 protein [Xenopus laevis]
Length = 217
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 119/200 (59%), Gaps = 34/200 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++YCR H+E+L D+
Sbjct: 45 LGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHFELLVQGDFHQ 104
Query: 59 -CGSAEIEQPMSPRPA-PWQPT---TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
+E+ A P+ TVQKGRPRKRK S+ + +++ S
Sbjct: 105 QLNYSELSAKGGGLAALPYFSNGTGTVQKGRPRKRK---------SQALGVDIINYSSGC 155
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
E + DL + P S Q++KRMRTSFKH+QLRTMKSYF IN
Sbjct: 156 NE--NETDLDRD-----------QTYPPS-----QKSKRMRTSFKHNQLRTMKSYFAINH 197
Query: 174 NPDAKDLKQLAQKTGLSKRV 193
NPDAK LKQLAQKTGL+KRV
Sbjct: 198 NPDAKGLKQLAQKTGLTKRV 217
>gi|124377606|dbj|BAF46220.1| LIM homeobox gene 9 epsilon protein [Glandirana rugosa]
Length = 297
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 114/203 (56%), Gaps = 34/203 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRAR+ V+HL CFTC C L+ GD FGM++ ++Y R H+E+L D+
Sbjct: 120 LGISASEIVMRARESVYHLSCFTCTXCNKTLSTGDHFGMKENLVYRRAHFELLVQGDFHS 179
Query: 61 SAEIEQ------PMSPRPAPWQPT-TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT 113
+ +S P T VQKGRPRKRK SP + IN
Sbjct: 180 QLNYTELSAKGGGLSALPYFTNGTGAVQKGRPRKRK----SPALGVDIIN---------- 225
Query: 114 LEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQ 173
+S + S P S Q+TKRMRTSFKHHQLRT KSYF IN
Sbjct: 226 --------YTSGCNENDTDLDRDQSYPPS-----QKTKRMRTSFKHHQLRTTKSYFAINH 272
Query: 174 NPDAKDLKQLAQKTGLSKRVLQN 196
NPDAKDLKQLAQKT L+KRVLQN
Sbjct: 273 NPDAKDLKQLAQKTRLTKRVLQN 295
>gi|357622660|gb|EHJ74086.1| apterous a [Danaus plexippus]
Length = 397
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 116/209 (55%), Gaps = 27/209 (12%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
IS+SELVMRARDLVFH+HCF+C C LTKGD FG+RD +YCR HYE + DY
Sbjct: 132 ISASELVMRARDLVFHVHCFSCALCSARLTKGDTFGIRDSAVYCRLHYETMP--DYAPHM 189
Query: 63 EIEQP----------------MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANV 106
+ P P P+P + + V+ P+ + S PP +
Sbjct: 190 SVPGPPQMCPGPYAGPPPGSHYPPYPSP-EFSRVEPDVPKGSFFNGVSAPPPRQKGRPRK 248
Query: 107 MRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMK 166
+ L M + DL+ + + G G S RTKRMRTSFKHHQLRTMK
Sbjct: 249 KKPKDQDL-MTANLDLNPDYLEMGFRGGGGLGS-------TSRTKRMRTSFKHHQLRTMK 300
Query: 167 SYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 301 SYFAINHNPDAKDLKQLSQKTGLPKRVLQ 329
>gi|195119850|ref|XP_002004442.1| GI19612 [Drosophila mojavensis]
gi|193909510|gb|EDW08377.1| GI19612 [Drosophila mojavensis]
Length = 485
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 115/226 (50%), Gaps = 62/226 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D S
Sbjct: 232 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDAASST 291
Query: 63 EIE-------QPMSPRPAPWQ----------PTTV----------------QKGRPRKRK 89
+ Q SP PT + QKGRPRKRK
Sbjct: 292 SMSATYPYSTQFGSPHNDSSSPHSDPSRSIVPTGIFVPTSHVITGLPQPARQKGRPRKRK 351
Query: 90 LSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQR 149
+DI A I DL++ GS + + R
Sbjct: 352 ---------PKDIEAFTANI-----------DLNTEYVDFGR---------GSHMSASSR 382
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 383 TKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 428
>gi|195402627|ref|XP_002059906.1| apterous [Drosophila virilis]
gi|27374202|gb|AAN87274.1| ap [Drosophila virilis]
gi|194140772|gb|EDW57243.1| apterous [Drosophila virilis]
Length = 472
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 115/226 (50%), Gaps = 62/226 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D S
Sbjct: 219 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDAASST 278
Query: 63 EIE-------QPMSPRPAPWQ----------PTTV----------------QKGRPRKRK 89
+ Q SP PT + QKGRPRKRK
Sbjct: 279 SMSATYPYSTQFGSPHNDSSSPHSDPSRSIVPTGIFVPTSHVITGLPQPARQKGRPRKRK 338
Query: 90 LSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQR 149
+DI A I DL++ GS + + R
Sbjct: 339 ---------PKDIEAFTANI-----------DLNTEYVDFGR---------GSHMSASSR 369
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 370 TKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 415
>gi|195027475|ref|XP_001986608.1| GH20430 [Drosophila grimshawi]
gi|193902608|gb|EDW01475.1| GH20430 [Drosophila grimshawi]
Length = 469
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 116/231 (50%), Gaps = 73/231 (31%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D S+
Sbjct: 217 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDAASSS 276
Query: 63 --------------------------------EIEQPMS------PRPAPWQPTTVQKGR 84
I P S P+PA QKGR
Sbjct: 277 MSATYPYSTQFGSPHNDSSSPQSDPSRSIVPTGIFVPTSHVITGLPQPA------RQKGR 330
Query: 85 PRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
PRKRK +DI A I DL++ GS +
Sbjct: 331 PRKRK---------PKDIEAFTANI-----------DLNTEYVDFGR---------GSHM 361
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+ RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 362 SASSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 412
>gi|195425678|ref|XP_002061119.1| apterous [Drosophila willistoni]
gi|27374312|gb|AAO01060.1| ap-PA [Drosophila willistoni]
gi|194157204|gb|EDW72105.1| apterous [Drosophila willistoni]
Length = 469
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 116/231 (50%), Gaps = 73/231 (31%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D S+
Sbjct: 218 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDAASSS 277
Query: 63 --------------------------------EIEQPMS------PRPAPWQPTTVQKGR 84
I P S P+PA QKGR
Sbjct: 278 MSATYPYSTQFGSPHNDSSSPQSDPSRSIVPTGIFVPTSHVITGLPQPA------RQKGR 331
Query: 85 PRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
PRKRK +DI A I DL++ GS +
Sbjct: 332 PRKRK---------PKDIEAFTTNI-----------DLNTEYVDFGR---------GSHM 362
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+ RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 363 SASSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 413
>gi|118791388|ref|XP_552873.2| AGAP008980-PA [Anopheles gambiae str. PEST]
gi|116117575|gb|EAL38999.2| AGAP008980-PA [Anopheles gambiae str. PEST]
Length = 267
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 119/228 (52%), Gaps = 65/228 (28%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI---------- 52
ISSSELVMRAR LVFH+ CF+C C L KGD + +RD ++CR H E+
Sbjct: 14 ISSSELVMRARHLVFHIRCFSCAVCNTPLNKGDHYTIRDSAVFCRSHIELPLEAATTPGL 73
Query: 53 ------LRHRDYCGSAEIEQPMSP----------RPAPWQP---------TTVQKGRPRK 87
++ G++ + P+SP PA + P QKGRPRK
Sbjct: 74 PGMPMQCPYQSQYGTSPVA-PLSPSDSTTSGGKLNPATYYPPHGVTGLPQQPRQKGRPRK 132
Query: 88 RKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSH 147
RK +DI A M S DL++ L + G G+SS
Sbjct: 133 RK---------PKDIEA-----------MTASLDLNTEYLDLGFSRGLGSSS-------- 164
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
R KRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 165 -RAKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 211
>gi|194758260|ref|XP_001961380.1| GF13843 [Drosophila ananassae]
gi|190622678|gb|EDV38202.1| GF13843 [Drosophila ananassae]
Length = 469
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 113/231 (48%), Gaps = 73/231 (31%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD----- 57
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D
Sbjct: 217 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDAASSS 276
Query: 58 ----YCGSAEIEQPMS-----------------------------PRPAPWQPTTVQKGR 84
Y + + P + P+PA QKGR
Sbjct: 277 MSASYPYNTQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVITGLPQPA------RQKGR 330
Query: 85 PRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
PRKRK P + D+N + GS +
Sbjct: 331 PRKRKPKDIEPFTANIDLNTEYVDF-----------------------------GRGSHM 361
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 362 SSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 412
>gi|328708276|ref|XP_001946004.2| PREDICTED: protein apterous-like [Acyrthosiphon pisum]
Length = 556
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 121/242 (50%), Gaps = 66/242 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR------- 54
GIS SELVMRARD VFH+ CF+C C +LTKGD FGMRD ++C+ HY+
Sbjct: 253 GISPSELVMRARDTVFHVPCFSCTVCLAVLTKGDQFGMRDGAVFCQHHYQQFGPSSASLQ 312
Query: 55 ---------------------HRDYCGSAEIEQPM-------------------SPRPAP 74
Y S +E P PAP
Sbjct: 313 AQQQQQSPLQRTIMPPSMTPVQSPYPSSRALESPAPGAGAFFNGGAAATGGGGAPAVPAP 372
Query: 75 WQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSME-SLSYES 133
QP QKGRPRKRK +D++A T+ M + S +ME +
Sbjct: 373 TQPR--QKGRPRKRK---------PKDLDA-------MTVNMDMNSSDSYNMEMAFGPGG 414
Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
+G G HQRTKRMRTSFKHHQLRTMKSYF+ N NPDAKDLKQL+QKTGL KRV
Sbjct: 415 LSGGGGNGGPGSGHQRTKRMRTSFKHHQLRTMKSYFHHNHNPDAKDLKQLSQKTGLPKRV 474
Query: 194 LQ 195
LQ
Sbjct: 475 LQ 476
>gi|443696308|gb|ELT97041.1| hypothetical protein CAPTEDRAFT_43751, partial [Capitella teleta]
Length = 271
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 115/208 (55%), Gaps = 39/208 (18%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC- 59
+ IS++ELVM+ARD V+H++CFTC SC LL G+ FGM++ +IYCR HYE++ ++
Sbjct: 69 LAISANELVMKARDSVYHMNCFTCASCHKLLITGEHFGMKENLIYCRMHYEMVVQGEFYP 128
Query: 60 -----GSAEIEQPM--SPRPAPWQPTTVQ-----KGRPRKRKLSVDSPTPPSEDINANVM 107
G + P P P V KGRPRKRK + + +
Sbjct: 129 SPGHGGLDSVSFPALHGPGAMPHVFNGVHAPSAPKGRPRKRKRQAE-----------DEL 177
Query: 108 RIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKS 167
+ +L + DL +S ++ R KRMRTSFKHHQLR MKS
Sbjct: 178 EMCGRSLHGFNENDLPGLGNDMSMQA---------------RQKRMRTSFKHHQLRIMKS 222
Query: 168 YFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
YF +N NPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 223 YFQLNHNPDAKDLKQLAQKTGLSKRVLQ 250
>gi|328787176|ref|XP_392622.4| PREDICTED: protein apterous [Apis mellifera]
Length = 560
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 121/234 (51%), Gaps = 43/234 (18%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I +SELVMRARDLVFH+ CF+C +C + LTKGD FGMRD + CR HYE+ S
Sbjct: 258 ILASELVMRARDLVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYEMGAELHPSQSP 317
Query: 63 EIE----------QPM-SPR--------------------------PAPWQPTT---VQK 82
+ QP SP P P QP+T
Sbjct: 318 PVPVYPPGPHYPGQPFPSPEFLHHHHHHPPHPHHSMHPQHPHSHVSPVPLQPSTPSVPDA 377
Query: 83 GRPRKRK-LSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPG 141
G P K + + PP R P M + DL++ + + G G ++PG
Sbjct: 378 GSPPKVPYFNGAAVVPPPRQKGRPRKRKPKDLEAMTANIDLNADYIDMPFGRG-GPATPG 436
Query: 142 SGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S+ RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 437 I-PGSNSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 489
>gi|290753134|dbj|BAI79512.1| apterous [Ephoron eophilum]
Length = 248
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 114/233 (48%), Gaps = 54/233 (23%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD---- 57
I +SELVMRAR+LVFH+ CFTC C LTKGD FGM ++C+ HYE+
Sbjct: 24 AIHASELVMRARELVFHVQCFTCSVCNSALTKGDHFGMHGSNVFCQHHYELAARTSPPCT 83
Query: 58 -----YCGSAEIEQPMSPRPAPWQ------------------------------PTTVQK 82
P P P+ + P QK
Sbjct: 84 PTCPPVPAGYPYHTPPFPSPSDYHLPPSSALPPQPPPNPSPCLDPTAKVYFNGAPAARQK 143
Query: 83 GRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGS 142
GRPRKRK E + AN+ + L++ +G +G PGS
Sbjct: 144 GRPRKRK------PKDLESMTANLDLNSDSYLDVSAAGPYG--------RAGPSPGMPGS 189
Query: 143 GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S QRTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 190 NGQS-QRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 241
>gi|23893425|emb|CAD12363.1| apterous-1 [Cupiennius salei]
Length = 253
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 129/250 (51%), Gaps = 66/250 (26%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL--RHRDY 58
+ IS SELVMRAR+ V+HLHCFTC +C LTKG+ FG++D++IYCR HYE+L R Y
Sbjct: 13 LSISPSELVMRAREHVYHLHCFTCATCNKPLTKGEYFGLKDDVIYCRQHYEMLLQYERPY 72
Query: 59 CG----------SAEIEQPMS------------------------PRP-----------A 73
S + E P S PR A
Sbjct: 73 VHLKGEENEGDPSEKQEDPESTDFGANLPLNCGLDLLQSFQQQQQPRVNGSSDSAVRTMA 132
Query: 74 PWQPTTVQKGRPRKRKLSVDS--------PTPPSEDINANVMRIPSTTLEMLHSGDLSSS 125
T QKGRPRK+K + S P+ S D + ++ +T HS SSS
Sbjct: 133 TLAKTPGQKGRPRKQKSFLASSLLLPHRGPSVASSDDHCSLSGDHQSTPLHHHS---SSS 189
Query: 126 MESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQ 185
+ G+ S S H R KRMRTSFKHHQLR MKSYF IN NPDAKDLKQL+Q
Sbjct: 190 L-------AIGSDSSTSSEHL-ARPKRMRTSFKHHQLRAMKSYFAINHNPDAKDLKQLSQ 241
Query: 186 KTGLSKRVLQ 195
KTGLSKRVLQ
Sbjct: 242 KTGLSKRVLQ 251
>gi|328925118|dbj|BAK19074.1| Bmptp-Z and Bmap-A fusion protein alpha [Bombyx mori]
Length = 466
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
IS+SELVMRARDLVFH+HCF+C C L KGD +G+RD +YCR HYE +
Sbjct: 201 ISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETMPEYG----- 255
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIP------------ 110
P P P Q P P+P ++ +V + P
Sbjct: 256 ----PHMAVPGPPQMCPGTYAGPPPGAHYPPYPSPDFTRVDPDVQKGPYFNGAAAPPPRQ 311
Query: 111 --STTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSY 168
+ D+ ++ L+ + G + S RTKRMRTSFKHHQLRTMKSY
Sbjct: 312 KGRPRKKKPKDQDIMTANLDLNPDYLEMGFRGGGTLGSTSRTKRMRTSFKHHQLRTMKSY 371
Query: 169 FNINQNPDAKDLKQLAQKTGLSKRVLQ 195
F IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 372 FAINHNPDAKDLKQLSQKTGLPKRVLQ 398
>gi|328925128|dbj|BAK19079.1| apterous A splicing isoform type B [Bombyx mori]
Length = 398
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 107/205 (52%), Gaps = 19/205 (9%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR------ 56
IS+SELVMRARDLVFH+HCF+C C L KGD +G+RD +YCR HYE +
Sbjct: 133 ISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETMPEYGPHMAV 192
Query: 57 ----DYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSV--DSPTPPSEDINANVMRIP 110
C P P+ + P +K + PP + P
Sbjct: 193 PGPPQMCPGTYAGPPPGAHYPPYPSPDFTRVDPDVQKGPYFNGAAAPPPRQKGRPRKKKP 252
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
M + DL+ + + G + S RTKRMRTSFKHHQLRTMKSYF
Sbjct: 253 KDQDIMTANLDLNPDYLEMGFRGGGT-------LGSTSRTKRMRTSFKHHQLRTMKSYFA 305
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 306 INHNPDAKDLKQLSQKTGLPKRVLQ 330
>gi|380027050|ref|XP_003697249.1| PREDICTED: protein apterous-like [Apis florea]
Length = 555
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 121/231 (52%), Gaps = 40/231 (17%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I +SELVMRAR+LVFH+ CF+C +C + LTKGD FGMRD + CR HYE+ S
Sbjct: 256 ILASELVMRARELVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYEMGAELHPSQSP 315
Query: 63 EIE----------QPM-SPR-----------------------PAPWQPTT---VQKGRP 85
+ QP SP P P QP+T G P
Sbjct: 316 PVPVYPPGPHYPGQPFPSPEFLHHHHHHPHHSMHPQHPHSHVSPVPLQPSTPSVPDAGSP 375
Query: 86 RKRK-LSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGV 144
K + + PP R P M + DL++ + + G G ++PG
Sbjct: 376 PKVPYFNGAAVVPPPRQKGRPRKRKPKDLEAMTANIDLNADYIDMPFGRG-GPATPGI-P 433
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S+ RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 434 GSNSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 484
>gi|115727487|ref|XP_782032.2| PREDICTED: LIM/homeobox protein Lhx9 [Strongylocentrotus
purpuratus]
Length = 474
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 117/229 (51%), Gaps = 56/229 (24%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL------- 53
+GI S E+VMRAR+LV+HL CF+C C + L GD +GMR+ ++YC+ HYE L
Sbjct: 121 VGIESHEMVMRARELVYHLACFSCAVCNLELHTGDYYGMRENLVYCQLHYETLFVPSSDQ 180
Query: 54 --RHRDYCGSAEIEQP----MSPR-------PAPWQPTT-----------VQKGRPRKRK 89
H + S QP +SP P P P+T + KGRPRKRK
Sbjct: 181 STYHHLHHASPPPPQPTLHNLSPSYHTHGGSPNPAAPSTGHPFFQNGLSPIHKGRPRKRK 240
Query: 90 LSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSH-- 147
VD +N D M + G G H H
Sbjct: 241 -GVDHLIGFGMGMN-----------------DPCDPMGHHGHHPGLD----GDMYHQHVP 278
Query: 148 -QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTKRMRTSFKHHQLRTMKSYF +N NPDAKDLKQLA KTGL+KRVLQ
Sbjct: 279 AARTKRMRTSFKHHQLRTMKSYFAMNHNPDAKDLKQLAHKTGLTKRVLQ 327
>gi|158299661|ref|XP_319729.4| AGAP008979-PA [Anopheles gambiae str. PEST]
gi|157013624|gb|EAA14879.4| AGAP008979-PA [Anopheles gambiae str. PEST]
Length = 271
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 123/225 (54%), Gaps = 33/225 (14%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCR--PHYEILRHRDYC 59
GIS+S+LVMRA+DL+FH++CF+C+ CG LL GD G+RD ++C P R
Sbjct: 47 GISASDLVMRAKDLIFHVNCFSCLICGQLLRGGDTAGIRDGRVFCGKLPTNRARRQTPNR 106
Query: 60 GSA-----EIEQPMSPRPAP---WQ------PTTVQKGRPRK-------------RKLSV 92
G A + + P W P + PR R+ S
Sbjct: 107 GGANPPGRQSTHGLLPGQVCHLLWHFNHVSIPGAHIRSPPRWNYCAKDGSLHCDCRRRSR 166
Query: 93 DSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSG--VHSHQRT 150
+ + PSED A ++ + LS + SL + G+ SPGSG + + RT
Sbjct: 167 SNVSTPSEDSKAKTTQVNTGCCSCSEVDVLS--VNSLDLSTYDGSQSPGSGGALTPNCRT 224
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KRMRTSFKHHQLRTMKSYF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 225 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQ 269
>gi|383850854|ref|XP_003700989.1| PREDICTED: protein apterous-like [Megachile rotundata]
Length = 620
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 120/238 (50%), Gaps = 46/238 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I +SELVMRARDLVFH+ CF+C +C + LTKGD FGMRD + CR HYE+ S
Sbjct: 314 AILASELVMRARDLVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYEMGAELHPSQS 373
Query: 62 AEIEQ-------PMSPRPA---------------------------------PWQPTT-- 79
+ P P P+ P QP+T
Sbjct: 374 PPVPVYPPGPHYPGQPFPSPEFLHHHHHHPSHPPHPHHSMHPQHPHSHVSPVPLQPSTPS 433
Query: 80 -VQKGRPRKRK-LSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGN 137
G P K + + PP R P M + DL++ + + G G
Sbjct: 434 VPDAGSPPKVPYFNGAAVVPPPRQKGRPRKRKPKDLEAMTANIDLNADYIDMPFGRG-GP 492
Query: 138 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
++PG S+ RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 493 ATPGI-PGSNSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 549
>gi|350404757|ref|XP_003487210.1| PREDICTED: protein apterous-like [Bombus impatiens]
Length = 550
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 121/239 (50%), Gaps = 48/239 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I +SELVMRARDLVFH+ CF+C +C + LTKGD FGMRD + CR HYE+ S
Sbjct: 244 AILASELVMRARDLVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYEMGAELHPSQS 303
Query: 62 AEIEQ-------PMSPRPA---------------------------------PWQPTT-- 79
+ P P P+ P QP+T
Sbjct: 304 PPVPVYPPGPHYPGQPFPSPEFLHHHHHHPSHPSHPHHSMHPQHPHSHVSPVPLQPSTPS 363
Query: 80 -VQKGRPRKRK-LSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGN 137
G P K + + PP R P M + DL++ + + G G
Sbjct: 364 IPDAGSPPKVPYFNGAAVVPPPRQKGRPRKRKPKDLEAMTANIDLNADYIDMPFGRG-GP 422
Query: 138 SSPG-SGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
++PG G +S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 423 ATPGIPGANS--RTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 479
>gi|45549164|ref|NP_523621.2| apterous, isoform B [Drosophila melanogaster]
gi|281360184|ref|NP_001163059.1| apterous, isoform E [Drosophila melanogaster]
gi|45445417|gb|AAM68357.2| apterous, isoform B [Drosophila melanogaster]
gi|272432346|gb|ACZ94339.1| apterous, isoform E [Drosophila melanogaster]
Length = 246
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 110/224 (49%), Gaps = 73/224 (32%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD---------YCG 60
MRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D Y
Sbjct: 1 MRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSSMSATYPY 60
Query: 61 SAEIEQPMS-----------------------------PRPAPWQPTTVQKGRPRKRKLS 91
SA+ P + P+PA QKGRPRKRK
Sbjct: 61 SAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPA------RQKGRPRKRK-- 112
Query: 92 VDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTK 151
+DI A I DL++ GS + S RTK
Sbjct: 113 -------PKDIEAFTANI-----------DLNTEYVDFGR---------GSHLSSSSRTK 145
Query: 152 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 146 RMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 189
>gi|307196005|gb|EFN77730.1| Protein apterous [Harpegnathos saltator]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 116/237 (48%), Gaps = 45/237 (18%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I +SELVMRAR+LVFH+ CF+C +C + LTKGD FGMRD + CR HYE+ S
Sbjct: 14 AILASELVMRARELVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYEMGAELHPAQS 73
Query: 62 AEIE--------QPMSP------------------------------RPAPWQPTT---V 80
+ QP P P P QP+T
Sbjct: 74 PPVPVYPPHYPGQPPFPSPEFLHHHHHHHAPPHPHHSMHPQHPHSHVSPVPLQPSTPSVP 133
Query: 81 QKGRPRKRKLSVDSPT--PPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNS 138
P K + T PP R P M S DL++ +S+ G +
Sbjct: 134 DASSPAKVPYFNGAATVVPPPRQKGRPRKRKPKDLETMTASLDLNADYIDMSFGRGGPGT 193
Query: 139 SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S+ RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 194 P--GMPGSNSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 248
>gi|227430299|ref|NP_001153058.1| LIM homeobox 2a [Danio rerio]
gi|226434001|gb|ACO56117.1| LIM homeodomain protein 2a [Danio rerio]
Length = 320
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 110/196 (56%), Gaps = 32/196 (16%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD-YC 59
+GIS++E+VMRARDLV+HL CF+C +C +L GD +GM++ +YCR H + H D Y
Sbjct: 80 LGISATEIVMRARDLVYHLSCFSCATCHKVLLTGDHYGMKETSVYCRAHIQRECHADLYY 139
Query: 60 GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHS 119
+ S + + V + R R+RK + ST + +S
Sbjct: 140 SDMSSRETNSESHTYDEESPVHRARVRRRKNN-------------------STADHIAYS 180
Query: 120 GDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
D+S LS Q++KRMRTSFKHHQLRTM+S+F N NPDAKD
Sbjct: 181 SDVSDLGVDLSERVSC------------QKSKRMRTSFKHHQLRTMQSFFTHNHNPDAKD 228
Query: 180 LKQLAQKTGLSKRVLQ 195
LK+LAQKTGL+KRVLQ
Sbjct: 229 LKELAQKTGLTKRVLQ 244
>gi|443696309|gb|ELT97042.1| hypothetical protein CAPTEDRAFT_167444 [Capitella teleta]
Length = 444
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 116/208 (55%), Gaps = 36/208 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
M I+S E+VM+AR +VFHL+CFTC C +LT G+ FGM+ +M+YCR HYE +
Sbjct: 166 MSIASHEMVMKARQMVFHLNCFTCCVCMKMLTPGEHFGMQHDMVYCRVHYEDMVCGGGTA 225
Query: 61 SAEIEQP-MSPRPAPWQPTT------VQKGRPRKRKLSVDS---PTPPSEDINANVMRIP 110
P M+ +Q QKGRPRKRK + P P E R
Sbjct: 226 GGGGGPPDMAGMHDGFQVRAYNGVGGTQKGRPRKRKAVSEMDLIPNPIGE------FRFG 279
Query: 111 STTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKS 167
+++ GD S ++ SG+H + + KRMRTSFKH+QLRTM++
Sbjct: 280 RISMD----GDFCSDLDL-------------SGIHGNYGATKHKRMRTSFKHNQLRTMRT 322
Query: 168 YFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
YF++N NPDAKDLK L+ KTGLSK+VLQ
Sbjct: 323 YFSLNHNPDAKDLKDLSSKTGLSKKVLQ 350
>gi|157119550|ref|XP_001659419.1| lim homeobox protein [Aedes aegypti]
gi|108875287|gb|EAT39512.1| AAEL008694-PA [Aedes aegypti]
Length = 245
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 110/220 (50%), Gaps = 65/220 (29%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI----------------- 52
MRAR LVFH+ CF+C C LL KGD F +RD + CR H +I
Sbjct: 1 MRARHLVFHIRCFSCAICNTLLNKGDHFTIRDSAVLCRSHIDIPPLDPGAPIPLAMQCQY 60
Query: 53 -----------LRHRDYCGSAEIEQP--MSPR----PAPWQPTTVQKGRPRKRKLSVDSP 95
L D GS+++ SP P QP QKGRPRKRK
Sbjct: 61 PSQYGTSPSAPLSPSDSTGSSKMPPAGYFSPHHTVTALPQQPR--QKGRPRKRK------ 112
Query: 96 TPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRT 155
+DI A M S DL++ L + G G+SS R KRMRT
Sbjct: 113 ---PKDIEA-----------MTASLDLNTEYLDLGFSRGLGSSS---------RAKRMRT 149
Query: 156 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 150 SFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 189
>gi|339238047|ref|XP_003380578.1| LIM/homeobox protein Lhx9 [Trichinella spiralis]
gi|316976506|gb|EFV59791.1| LIM/homeobox protein Lhx9 [Trichinella spiralis]
Length = 337
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 108/195 (55%), Gaps = 29/195 (14%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGM-RDEMIYCRPHYEILRHRDYCGSAEIE 65
+LVMRARD VFHLHCFTC+ C + + G LFG+ + +IYC H + G+A
Sbjct: 82 DLVMRARDYVFHLHCFTCVVCNVPMQPGSLFGLGNNGLIYCNAHCGGTWSANEHGNASPV 141
Query: 66 QPMSPRPAPWQPTTV-----QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ W + KGRPR+RK++V+ P S D + +V
Sbjct: 142 TCQAGTGPYWSVSHSTEKPRSKGRPRRRKVTVEQLKPMSADSDCSV-------------- 187
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
E S E+ +SS G + R KRMRTSFK QLRTMK+YF +N NPDAKDL
Sbjct: 188 ------EKSSEENSRCHSSSGMQI---MRPKRMRTSFKQQQLRTMKAYFQMNHNPDAKDL 238
Query: 181 KQLAQKTGLSKRVLQ 195
KQLAQKTGL+KR+LQ
Sbjct: 239 KQLAQKTGLTKRILQ 253
>gi|332018691|gb|EGI59263.1| Protein apterous [Acromyrmex echinatior]
Length = 558
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 117/257 (45%), Gaps = 85/257 (33%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCR-------------- 47
I +SELVMRAR+LVFH+ CF+C +C +LL KGD FGMRD + CR
Sbjct: 253 AILASELVMRARELVFHVRCFSCAACAVLLMKGDHFGMRDGAVLCRLHYEMGAELHPAQS 312
Query: 48 -----------------PHYEILRHRDYCGSAEIEQPMSPR-------PAPWQPTTV--- 80
P E L H + + M P+ P P QP+T
Sbjct: 313 PPVPVYPPGPHYPGQPFPSPEFLHHHHHHAPSHPHHSMHPQHPHSHVSPVPLQPSTPSVP 372
Query: 81 ----------------------QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
QKGRPRKRK S D+NA+ +
Sbjct: 373 DASSPPKVPYFNGAAAVVPPPRQKGRPRKRKPKDLEAMTASLDLNADYI----------- 421
Query: 119 SGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
D+ G++S RTKRMRTSFKHHQLRTMKSYF IN NPDAK
Sbjct: 422 --DMPFGRGGPGTPGMPGSNS---------RTKRMRTSFKHHQLRTMKSYFAINHNPDAK 470
Query: 179 DLKQLAQKTGLSKRVLQ 195
DLKQL+QKTGL KRVLQ
Sbjct: 471 DLKQLSQKTGLPKRVLQ 487
>gi|328925132|dbj|BAK19081.1| apterous A splicing isoform type D [Bombyx mori]
Length = 259
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 100/198 (50%), Gaps = 19/198 (9%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR----------DYC 59
MRARDLVFH+HCF+C C L KGD +G+RD +YCR HYE + C
Sbjct: 1 MRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETMPEYGPHMAVPGPPQMC 60
Query: 60 GSAEIEQPMSPRPAPWQPTTVQKGRP--RKRKLSVDSPTPPSEDINANVMRIPSTTLEML 117
P P+ + P +K + PP + P M
Sbjct: 61 PGTYAGPPPGAHYPPYPSPDFTRVDPDVQKGPYFNGAAAPPPRQKGRPRKKKPKDQDIMT 120
Query: 118 HSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
+ DL+ + + G + S RTKRMRTSFKHHQLRTMKSYF IN NPDA
Sbjct: 121 ANLDLNPDYLEMGFRGGGT-------LGSTSRTKRMRTSFKHHQLRTMKSYFAINHNPDA 173
Query: 178 KDLKQLAQKTGLSKRVLQ 195
KDLKQL+QKTGL KRVLQ
Sbjct: 174 KDLKQLSQKTGLPKRVLQ 191
>gi|156390719|ref|XP_001635417.1| predicted protein [Nematostella vectensis]
gi|156222511|gb|EDO43354.1| predicted protein [Nematostella vectensis]
Length = 253
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 106/194 (54%), Gaps = 44/194 (22%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
ISS ELVMRARD V+H++CF C C +L G+ FGMR IYC+ YE
Sbjct: 77 AISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMRGIRIYCKEDYE---------- 126
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
E+ + S P + ++ KGRPRKR++ +T +E
Sbjct: 127 -ELLREESRNPT--KINSLSKGRPRKRRI--------------------ATAIE------ 157
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ +L Y+ +G R KR+RTSFKHHQLR MK+YF +N NPDAKDLK
Sbjct: 158 ---SITNLGYDLSDRPGELTTGADG--RPKRVRTSFKHHQLRAMKTYFAMNHNPDAKDLK 212
Query: 182 QLAQKTGLSKRVLQ 195
QL+QKTGL+KRVLQ
Sbjct: 213 QLSQKTGLTKRVLQ 226
>gi|284424954|dbj|BAI67123.1| homepbox protein [Taeniopygia guttata]
Length = 156
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 99/181 (54%), Gaps = 30/181 (16%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY---CGSAEI 64
+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y E+
Sbjct: 1 MVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPPQLSYTEL 60
Query: 65 EQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
P+ TVQKGRPRKRK SP + ++ N SG
Sbjct: 61 AAKSGGLALPYFNGAGTVQKGRPRKRK----SPALGVDIVSYN-------------SGCN 103
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ + L + P S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKD KQ
Sbjct: 104 ENEADHLDRDQ---QPYPPS-----QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDFKQ 155
Query: 183 L 183
L
Sbjct: 156 L 156
>gi|328925126|dbj|BAK19078.1| apterous B beta [Bombyx mori]
Length = 159
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/82 (84%), Positives = 73/82 (89%), Gaps = 4/82 (4%)
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQ 173
E+LH GDLSSSMESL+Y+S +SPGS V SH QRTKRMRTSFKHHQLRTMKSYF INQ
Sbjct: 12 EILHRGDLSSSMESLAYDSSV--ASPGS-VSSHTQRTKRMRTSFKHHQLRTMKSYFAINQ 68
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
NPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 69 NPDAKDLKQLAQKTGLSKRVLQ 90
>gi|324512462|gb|ADY45163.1| LIM/homeobox protein Lhx9 [Ascaris suum]
Length = 258
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 100/187 (53%), Gaps = 41/187 (21%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEILRHRDYCGSAEIEQPM 68
MRAR+ VFHL CFTCI C L G+LF M + +YC+ HYE + +A E P+
Sbjct: 1 MRAREAVFHLRCFTCIVCSAPLHPGELFAMGEHGTLYCQGHYEPV------NAASSECPL 54
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMES 128
+PT V+ GR + R + E+ + N+ L
Sbjct: 55 ----IRTEPTEVRFGRGKTRCRKGKKTSEDGENGSDNIDYCDDEVL-------------- 96
Query: 129 LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 188
+SG R+KRMRTSFKHHQLRTMKSYFN+N NPDAKDLKQLAQ+TG
Sbjct: 97 --TQSG--------------RSKRMRTSFKHHQLRTMKSYFNLNHNPDAKDLKQLAQRTG 140
Query: 189 LSKRVLQ 195
L+KRVLQ
Sbjct: 141 LTKRVLQ 147
>gi|268580707|ref|XP_002645336.1| C. briggsae CBR-TTX-3 protein [Caenorhabditis briggsae]
Length = 461
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 100/194 (51%), Gaps = 33/194 (17%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEILRHRDYCGS 61
++ ++VMRA+++++H CF C C L GD + + E +YC+ HY +
Sbjct: 229 LNREDMVMRAKEMIYHNSCFVCFLCTKKLNTGDFYTVSPEGHLYCQAHYAV--------- 279
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
PT V P+ +S + P + A ++ + ST+
Sbjct: 280 ---------------PTQVLLEEPKSTTVSAVASPPKTTPPTAVILPLSSTSPAPEAPAR 324
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+S E+ + E G+ N HQR KRMRTSFKHHQLR MKSYF +N NPDAKDLK
Sbjct: 325 ETSEAEASTDEDGSSNG--------HQRNKRMRTSFKHHQLRAMKSYFALNHNPDAKDLK 376
Query: 182 QLAQKTGLSKRVLQ 195
QLA KT L+KRVLQ
Sbjct: 377 QLAVKTNLTKRVLQ 390
>gi|270004906|gb|EFA01354.1| apterous 2 [Tribolium castaneum]
Length = 150
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 68/80 (85%), Gaps = 1/80 (1%)
Query: 116 MLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
ML GDLSSSMESLSY+S + + +G H QRTKRMRTSFKHHQLRTMK+YF INQNP
Sbjct: 1 MLQQGDLSSSMESLSYDSSVTSPASSNG-HQPQRTKRMRTSFKHHQLRTMKTYFAINQNP 59
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DAKDLKQLAQKTGLSKRVLQ
Sbjct: 60 DAKDLKQLAQKTGLSKRVLQ 79
>gi|319740961|gb|ADV69000.1| lim-homeobox 2/9 [Patiria miniata]
Length = 304
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE------ILRH 55
GI++ E+VMRAR LV+HL CFTC +C + LT GD +GMRD +YCR HYE +H
Sbjct: 116 GIAAHEMVMRARSLVYHLSCFTCSACSMALTTGDYYGMRDTQVYCRLHYESTALSPAEQH 175
Query: 56 RDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPS---------EDINANV 106
R + G + P PA QP Q P + P+PP + V
Sbjct: 176 RRHQGENQPHLTHQPHPA-HQPLHSQGMAPSYQGPLTPGPSPPCAPSVPIGFYNGMGVGV 234
Query: 107 MRI-PSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTM 165
+ P + GD + S+ + G G QRTKRMRTSFKHHQLRTM
Sbjct: 235 HKGRPRKRKGVDSVGDYCRGLGSV--DGHLGLDGDGYVSQQSQRTKRMRTSFKHHQLRTM 292
Query: 166 KSYFNINQNPDA 177
K+YF++N NPD
Sbjct: 293 KTYFSLNHNPDV 304
>gi|312074868|ref|XP_003140163.1| Lhx2 protein [Loa loa]
gi|307764674|gb|EFO23908.1| Lhx2 protein [Loa loa]
Length = 372
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 97/197 (49%), Gaps = 47/197 (23%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGM-RDEMIYCRPHYEILRHRDYCGS 61
+ ++VMR + +FHL CFTC C L +LF M + +YC H+ G+
Sbjct: 105 LCDEDIVMRVNEAIFHLECFTCYVCSAPLRPSELFMMGCNGTLYCHVHF---------GA 155
Query: 62 AEI-EQPMSPRPAPWQPTTVQKGRPRKRKL--SVDSPTPPSEDINANVMRIPSTTLEMLH 118
I S R +V +G+ R RK S D ++ I+ I TL + H
Sbjct: 156 INITSDDSSLRTTDSSEISVLRGKERCRKWKKSTDDIESTTDSIDC----IEEETLNITH 211
Query: 119 SGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
++KRMRTSFKHHQLRTMKSYFN+N NPDAK
Sbjct: 212 ------------------------------KSKRMRTSFKHHQLRTMKSYFNLNHNPDAK 241
Query: 179 DLKQLAQKTGLSKRVLQ 195
DLKQLAQ+TGL+KRVLQ
Sbjct: 242 DLKQLAQRTGLTKRVLQ 258
>gi|170578520|ref|XP_001894442.1| homeobox domain containing protein [Brugia malayi]
gi|158598966|gb|EDP36714.1| homeobox domain containing protein [Brugia malayi]
Length = 248
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMR-DEMIYCRPHYEILRHRDYCGS 61
+ ++VMRA D +FHL CFTC C I L +LF M + +YC H+ +
Sbjct: 38 LCDEDIVMRANDAIFHLECFTCYVCSIPLQPSELFIMGCNGTLYCNAHFGAIN------- 90
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
S R ++ G+ R RK ++DI + I E L
Sbjct: 91 -PTNDDNSLRTTASSEISLIGGKERCRKWR-----KSTDDIESTTDSIDCVEEEAL---- 140
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S++++S KRMRTSFKHHQLRTMKSYFN+N NPDAKDLK
Sbjct: 141 ------SITHKS-----------------KRMRTSFKHHQLRTMKSYFNLNHNPDAKDLK 177
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+KRVLQ
Sbjct: 178 QLAQRTGLTKRVLQ 191
>gi|392927445|ref|NP_001257168.1| Protein TTX-3, isoform a [Caenorhabditis elegans]
gi|2795770|gb|AAB97099.1| putative transcription factor TTX-3 [Caenorhabditis elegans]
gi|13548319|emb|CAB03956.3| Protein TTX-3, isoform a [Caenorhabditis elegans]
Length = 409
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 92/194 (47%), Gaps = 35/194 (18%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEILRHRDYCGS 61
++ ++VM+A++++FH CF C CGI L GD + M + +YC HY +R C
Sbjct: 178 LNREDMVMKAKEMIFHHACFVCFICGIKLNPGDYYTMSPQGHLYCHAHYNAVRSTVLC-- 235
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
E+ PP E
Sbjct: 236 ---EEAAVATVPAVVAPPPPPPTTTTAPPPAAPEQPPRE--------------------- 271
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ E+ + E G G+ S QR+KRMRTSFKHHQLR MK+YF +N NPDAKDLK
Sbjct: 272 ASTEAEASTDEDGNGSGS--------QRSKRMRTSFKHHQLRAMKTYFALNHNPDAKDLK 323
Query: 182 QLAQKTGLSKRVLQ 195
QLA KT L+KRVLQ
Sbjct: 324 QLAAKTNLTKRVLQ 337
>gi|392927447|ref|NP_001257169.1| Protein TTX-3, isoform b [Caenorhabditis elegans]
gi|211970482|emb|CAR97817.1| Protein TTX-3, isoform b [Caenorhabditis elegans]
Length = 381
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 92/194 (47%), Gaps = 35/194 (18%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEILRHRDYCGS 61
++ ++VM+A++++FH CF C CGI L GD + M + +YC HY +R C
Sbjct: 150 LNREDMVMKAKEMIFHHACFVCFICGIKLNPGDYYTMSPQGHLYCHAHYNAVRSTVLC-- 207
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
E+ PP E
Sbjct: 208 ---EEAAVATVPAVVAPPPPPPTTTTAPPPAAPEQPPRE--------------------- 243
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ E+ + E G G+ S QR+KRMRTSFKHHQLR MK+YF +N NPDAKDLK
Sbjct: 244 ASTEAEASTDEDGNGSGS--------QRSKRMRTSFKHHQLRAMKTYFALNHNPDAKDLK 295
Query: 182 QLAQKTGLSKRVLQ 195
QLA KT L+KRVLQ
Sbjct: 296 QLAAKTNLTKRVLQ 309
>gi|357932917|emb|CBH76626.1| LIM/homeobox protein Lhx9, partial [Oreochromis mossambicus]
Length = 172
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 97/174 (55%), Gaps = 31/174 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL-RHRDY- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L + DY
Sbjct: 24 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFETLVQGPDYH 83
Query: 59 --CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL 114
AE+ P+ T QKGRPRKRK P+ I+ IPS
Sbjct: 84 PQLNFAELAAKGGGLTLPYFNGTGTAQKGRPRKRK-------SPAMGID-----IPS--- 128
Query: 115 EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSY 168
++G + + L + A + Q+TKRMRTSFKHHQLRTMKSY
Sbjct: 129 --YNTGCNENDTDHLDRDQQAYPPT--------QKTKRMRTSFKHHQLRTMKSY 172
>gi|308464503|ref|XP_003094518.1| CRE-TTX-3 protein [Caenorhabditis remanei]
gi|308247319|gb|EFO91271.1| CRE-TTX-3 protein [Caenorhabditis remanei]
Length = 460
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 100/198 (50%), Gaps = 34/198 (17%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEILRHRDYC 59
+ + +++M+A++++FH CF C CG L GD + M +YC HY+++R
Sbjct: 227 LPLKREDMIMKAKEMIFHHACFVCFICGTKLNTGDYYTMSPSGHLYCHAHYDVIR----- 281
Query: 60 GSAEIEQPMSPR--PAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEML 117
SA ++P P AP P K++ + + R PST
Sbjct: 282 TSALCDEPTPPVVVAAPLSPPKTTPPPVVKKEATP------APPAAEKPAREPST----- 330
Query: 118 HSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
E A GS S+QR+KRMRTSFKHHQLR MK+YF +N NPDA
Sbjct: 331 --------------EGEASTDEDGSN-GSNQRSKRMRTSFKHHQLRAMKTYFALNHNPDA 375
Query: 178 KDLKQLAQKTGLSKRVLQ 195
KDLKQLA KT L+KRVLQ
Sbjct: 376 KDLKQLAAKTNLTKRVLQ 393
>gi|341885594|gb|EGT41529.1| CBN-TTX-3 protein [Caenorhabditis brenneri]
Length = 388
Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 100/194 (51%), Gaps = 25/194 (12%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRD-EMIYCRPHYEILRHRDYCGS 61
++ ++VM+A++++FH CF C CG L GD + M +YC HY ++R C
Sbjct: 148 LNREDMVMKAKEMIFHHACFVCFICGTKLNPGDYYTMSPLGHLYCHAHYNVVRTTVLC-- 205
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
++ P ++ + TPP+E A++ + + +
Sbjct: 206 -------------------EEPAPAAATVAPAASTPPAETSPASIPPTAPAPAPVAAAPE 246
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ S E+ SG +QR+KRMRTSFKHHQLR MK+YF +N NPDAKDLK
Sbjct: 247 KPAREPSTEAEASTDEDGSTSG---NQRSKRMRTSFKHHQLRAMKNYFALNHNPDAKDLK 303
Query: 182 QLAQKTGLSKRVLQ 195
QLA KT L+KRVLQ
Sbjct: 304 QLAAKTNLTKRVLQ 317
>gi|119611693|gb|EAW91287.1| LIM homeobox 9, isoform CRA_a [Homo sapiens]
Length = 155
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 89/162 (54%), Gaps = 30/162 (18%)
Query: 39 MRDEMIYCRPHYEILRHRDY---CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVD 93
M+D ++YCR H+E L +Y E+ P+ TVQKGRPRKRK
Sbjct: 1 MKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK---- 56
Query: 94 SPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRM 153
SP + +N N SG + + L + P S Q+TKRM
Sbjct: 57 SPALGVDIVNYN-------------SGCNENEADHLDRDQ---QPYPPS-----QKTKRM 95
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 96 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 137
>gi|321454677|gb|EFX65838.1| hypothetical protein DAPPUDRAFT_13685 [Daphnia pulex]
Length = 266
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 95/193 (49%), Gaps = 35/193 (18%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
ELVMR R+ +FH CF+C C L KG FGM +I+C+ HY Q
Sbjct: 76 ELVMRGREHLFHTRCFSCHVCQTHLIKGSTFGMVGALIFCQQHY---------------Q 120
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
P S P+ + G+P S PP E + + H ++
Sbjct: 121 PGSSAPSGF------NGQPL-----AASQQPPVETYMGHHQEPFGSPRPFEHH-----AL 164
Query: 127 ESLSYESGAGNSSPG----SGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ G +S G S Q+TKR+RTSFKHHQLR +KSYF N NPDAKDLKQ
Sbjct: 165 HQQQHYHGQMVNSTGLQQVSSQQQQQKTKRLRTSFKHHQLRMLKSYFATNHNPDAKDLKQ 224
Query: 183 LAQKTGLSKRVLQ 195
L+QKT LSKRVLQ
Sbjct: 225 LSQKTTLSKRVLQ 237
>gi|270004609|gb|EFA01057.1| hypothetical protein TcasGA2_TC003974 [Tribolium castaneum]
Length = 218
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 9/98 (9%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS++ELVMRARD V+HLHCF+C SCGI L+KGD FGMRD +IYCRPHYE+L D+C +
Sbjct: 98 GISANELVMRARDSVYHLHCFSCTSCGIPLSKGDHFGMRDGLIYCRPHYELL---DFCDT 154
Query: 62 AEIEQPM---SPRPAPWQPTTV---QKGRPRKRKLSVD 93
++ + M S P + KGRPRKRKL V+
Sbjct: 155 SDPVEMMFRGSESPPGYFANAAPQHHKGRPRKRKLPVE 192
>gi|326930544|ref|XP_003211406.1| PREDICTED: LIM/homeobox protein Lhx2-like [Meleagris gallopavo]
Length = 267
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 72/118 (61%), Gaps = 26/118 (22%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNS 138
TVQKGRPRKRK SP P DL++ +LS G+
Sbjct: 80 TVQKGRPRKRK----SPGP---------------------GADLAAYNAALSCNENDGDH 114
Query: 139 SPGSGVH-SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+ S+Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 115 LDRDQQYPSNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 172
>gi|55846760|gb|AAV67384.1| LIM homeobox protein 2 [Macaca fascicularis]
Length = 176
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 72/118 (61%), Gaps = 26/118 (22%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLS-YESGAGN 137
TVQKGRPRKRK SP P DL++ +LS E+ A +
Sbjct: 5 TVQKGRPRKRK----SPGP---------------------GADLAAYNAALSCNENDAEH 39
Query: 138 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 40 LDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 97
>gi|146331998|gb|ABQ22505.1| LIM homeobox protein Lhx2-like protein [Callithrix jacchus]
Length = 197
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 72/118 (61%), Gaps = 26/118 (22%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLS-YESGAGN 137
TVQKGRPRKRK SP P DL++ +LS E+ A +
Sbjct: 10 TVQKGRPRKRK----SPGP---------------------GADLAAYNAALSCNENDAEH 44
Query: 138 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 45 LDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 102
>gi|355699334|gb|AES01093.1| LIM homeobox 2 [Mustela putorius furo]
Length = 203
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 72/118 (61%), Gaps = 26/118 (22%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLS-YESGAGN 137
TVQKGRPRKRK SP P DL++ +LS E+ A +
Sbjct: 12 TVQKGRPRKRK----SPGP---------------------GADLAAYNAALSCNENDAEH 46
Query: 138 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 47 LDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 104
>gi|241753309|ref|XP_002401118.1| lim homeobox protein, putative [Ixodes scapularis]
gi|215508343|gb|EEC17797.1| lim homeobox protein, putative [Ixodes scapularis]
Length = 357
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 103/247 (41%), Gaps = 74/247 (29%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY-----EILRHRDYCGSAEI---EQPM 68
+H HC C C L RD IYC+ Y + R D AE+ + +
Sbjct: 58 WHTHCLRCCHCKQQLDSELTCFARDGNIYCKEDYYSRYPRLPRCADLPIDAELTTNKLVL 117
Query: 69 SPRPAPWQP-------------------------------TTVQKGRPRKRKLSVDSPTP 97
S P W+P T+ ++G P R S
Sbjct: 118 SRNPLAWRPFAGRTIVSSEAGSDNKPPPSLLLVAICFRHLTSEERGTPVTRGYS------ 171
Query: 98 PSEDINANVMRI-------------------PS----------TTLEMLHSGDLSSSMES 128
PS D + V R+ PS + L G+ S+
Sbjct: 172 PSTDAASFVKRVPHPPPPPPPTSTVFSNGSVPSVQHVQHANHPSRLPQSQRGEEGVSLPD 231
Query: 129 LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 188
L+ G G S+ QRTKRMRTSFKHHQLRTMKSYF INQNPDAKDLKQLAQKTG
Sbjct: 232 LASLDGNGPSALQQQQQQQQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTG 291
Query: 189 LSKRVLQ 195
LSKRVLQ
Sbjct: 292 LSKRVLQ 298
>gi|13509271|emb|CAC35216.1| Lhx2 protein [Xenopus laevis]
Length = 96
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 72/117 (61%), Gaps = 26/117 (22%)
Query: 80 VQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSS 139
VQKGRPRKRK +P S DL++ +LS+ G+
Sbjct: 4 VQKGRPRKRK------SPGS-------------------GADLAAYNAALSFNENDGDHM 38
Query: 140 PGSGVHS-HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
++ +Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 39 DRDQQYTPNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 95
>gi|299115102|dbj|BAJ09782.1| apterous 1 [Daphnia magna]
Length = 468
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 83/159 (52%), Gaps = 42/159 (26%)
Query: 79 TVQKGRPRKRKL--------------------------------SVDSPTPPSEDINANV 106
+VQKGRPRKRK+ + S + +NA
Sbjct: 290 SVQKGRPRKRKIPAAATAGTAAAALAHSGNNNNNGNGGGSTGNHADSSILGQQQHLNAAN 349
Query: 107 MRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQ----------RTKRMRTS 156
+R + ++ML S SSME + Y+S N S G RTKRMRTS
Sbjct: 350 LRQLTAGIDMLVSSADLSSMEGMVYDSSGTNGSASGGGGGGGSSSQQQQQQQRTKRMRTS 409
Query: 157 FKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FKHHQLRTMKSYF INQNPDAKDLKQLAQKTGLSKRVLQ
Sbjct: 410 FKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQ 448
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 44/53 (83%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55
+ S+ELVMRARD VFHL CFTC +C LTKGD+FGMRD ++YCR HYE+L+H
Sbjct: 76 LGSNELVMRARDAVFHLACFTCAACNQPLTKGDIFGMRDGIVYCRLHYEMLQH 128
>gi|242023959|ref|XP_002432398.1| Ultrabithorax, putative [Pediculus humanus corporis]
gi|212517821|gb|EEB19660.1| Ultrabithorax, putative [Pediculus humanus corporis]
Length = 305
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 73/123 (59%), Gaps = 25/123 (20%)
Query: 73 APWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYE 132
AP T QKGRPRKRK P M + DL+ S +
Sbjct: 138 APTPTTPRQKGRPRKRK--------------------PKDLEAMTANLDLNDSY----LD 173
Query: 133 SGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 192
G G ++PGS + S R+KRMRTSFKHHQLRTMKSYF+IN NPDAKDLKQL+QKT L KR
Sbjct: 174 FGRGPNTPGS-LSSSGRSKRMRTSFKHHQLRTMKSYFSINHNPDAKDLKQLSQKTSLPKR 232
Query: 193 VLQ 195
VLQ
Sbjct: 233 VLQ 235
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI 52
ISSSELVMRARD VFH+HCFTC C LTKGD FG+RD IYCR HY++
Sbjct: 13 AISSSELVMRARDFVFHVHCFTCTVCNSTLTKGDHFGLRDGAIYCRTHYDL 63
>gi|365784328|dbj|BAL42853.1| apterous-like protein, partial [Megoura crassicauda]
Length = 133
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 75/124 (60%), Gaps = 19/124 (15%)
Query: 72 PAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSME-SLS 130
PAP QP QKGRPRKRK +D++A T+ M + S +ME +
Sbjct: 28 PAPTQPR--QKGRPRKRK---------PKDLDA-------MTVNMDMNSSDSYNMEMAFG 69
Query: 131 YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLS 190
+G G HQRTKRMRTSFKHHQLRTM SYF+ N NPDAKDLKQL+QKTGL
Sbjct: 70 PGGLSGGGGNGGPGSGHQRTKRMRTSFKHHQLRTMXSYFHHNHNPDAKDLKQLSQKTGLP 129
Query: 191 KRVL 194
KRVL
Sbjct: 130 KRVL 133
>gi|345322211|ref|XP_003430546.1| PREDICTED: LIM/homeobox protein Lhx2-like [Ornithorhynchus
anatinus]
Length = 394
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 101/242 (41%), Gaps = 48/242 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR----HRD 57
G S + A D +H+ C C C + L +D IYC+ Y R D
Sbjct: 58 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRYRSPPPTPD 117
Query: 58 YCGSAEIEQPMSPRPAPWQPTTVQK----------------GRPRKRKLSVDS-----PT 96
+ R A P TV+ G+ R+R+L + P
Sbjct: 118 PPPLTPRPPSQTDRVAAGPPDTVEGEEAGRSLSHPGFGLKVGQSRRRQLDQGNWFQGFPA 177
Query: 97 PPSEDI----NANVMRIPSTTLEMLHSGDLS-SSMESLSYESGAGNSS----------PG 141
D N + R LE D E + S AG+ +
Sbjct: 178 RFEGDWDREENGEISRWKGRCLEAGFRRDGERGGGEKVGKSSAAGDGNLETGDSLSCNEN 237
Query: 142 SGVH--------SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G H S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRV
Sbjct: 238 DGDHLDRDQQYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRV 297
Query: 194 LQ 195
LQ
Sbjct: 298 LQ 299
>gi|198437781|ref|XP_002124033.1| PREDICTED: transcription factor protein [Ciona intestinalis]
Length = 402
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 93/195 (47%), Gaps = 42/195 (21%)
Query: 3 ISSSELVMRARDLVFHLH--CFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
I ELVMR D V+H + CF+C SC T G F + C E +Y
Sbjct: 108 IEPHELVMRVHDRVYHANYKCFSCCSCQRPFTTGQEFVEVAPNLVCMDCCERESSSEY-F 166
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ +P GRP+KRK + S+ L+ +
Sbjct: 167 DINLHKP---------------GRPKKRK-----------------AIMTSSHLDSIGGM 194
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
++ E + ++ N P ++KRMRTSFKHHQLR MK+YF+ N NPDAKDL
Sbjct: 195 AVNYVTEEIRSDTERMNFPP-------HKSKRMRTSFKHHQLRAMKAYFHQNHNPDAKDL 247
Query: 181 KQLAQKTGLSKRVLQ 195
KQLAQ+TGL+KRVLQ
Sbjct: 248 KQLAQETGLTKRVLQ 262
>gi|327290044|ref|XP_003229734.1| PREDICTED: LIM/homeobox protein Lhx2-like, partial [Anolis
carolinensis]
Length = 163
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/50 (90%), Positives = 48/50 (96%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S+Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 19 SNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 68
>gi|322778971|gb|EFZ09382.1| hypothetical protein SINV_12440 [Solenopsis invicta]
Length = 322
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 67/119 (56%), Gaps = 22/119 (18%)
Query: 77 PTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAG 136
P QKGRPRKRK S D+NA+ + D+ G
Sbjct: 155 PPPRQKGRPRKRKPKDLEAMTASLDLNADYI-------------DMPFGRGGPGTPGMPG 201
Query: 137 NSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
++S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 202 SNS---------RTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 251
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI 52
I +SELVMRAR+LVFH+ CF+C +C +LLTKGD FGMRD + CR HYE+
Sbjct: 15 AILASELVMRARELVFHVRCFSCAACAVLLTKGDHFGMRDGAVLCRLHYEM 65
>gi|348543221|ref|XP_003459082.1| PREDICTED: LIM/homeobox protein Lhx9-like [Oreochromis niloticus]
Length = 509
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 88/193 (45%), Gaps = 50/193 (25%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I +S+LVMR+ +L FH HCF+C C + L G+L+ M+ +YC+ HY+
Sbjct: 241 IPASDLVMRSGELTFHPHCFSCQECDVKLMPGNLYCMQGANLYCQSHYQ--------SDG 292
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
++ P +P V + + SV SP P S+D A RIP
Sbjct: 293 GVQSPPDLQPKHHLDAQVSG----EGEESVSSPEPRSDDRAAG-GRIP------------ 335
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+RTKR+RT F+ QLR ++SYF NPD KD
Sbjct: 336 -------------------------RRTKRIRTCFRSEQLRALESYFAQKHNPDGKDWTC 370
Query: 183 LAQKTGLSKRVLQ 195
LA KTGL KRVLQ
Sbjct: 371 LAHKTGLPKRVLQ 383
>gi|94732382|emb|CAK04967.1| novel protein similar to vertebrate LIM homeobox 9 (LHX9) [Danio
rerio]
Length = 147
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 80/154 (51%), Gaps = 30/154 (19%)
Query: 47 RPHYEILRHRDY---CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRKLSVDSPTPPSED 101
R H+E L +Y AE+ P+ TVQKGRPRKRK
Sbjct: 1 RVHFETLIQGEYHPQLNYAELAAKGGGLALPYFNGTGTVQKGRPRKRK------------ 48
Query: 102 INANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQ 161
P+ +++ G SS + + P Q+TKRMRTSFKHHQ
Sbjct: 49 -------SPAMGIDI---GSYSSGCNENDADHLDRDQQP---YPPSQKTKRMRTSFKHHQ 95
Query: 162 LRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
LRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 96 LRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 129
>gi|170048226|ref|XP_001870662.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870356|gb|EDS33739.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 263
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 54/75 (72%), Gaps = 9/75 (12%)
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
DL++ L + G G+SS R KRMRTSFKHHQLRTMKSYF IN NPDAKDL
Sbjct: 141 DLNTEYLDLGFSRGLGSSS---------RAKRMRTSFKHHQLRTMKSYFAINHNPDAKDL 191
Query: 181 KQLAQKTGLSKRVLQ 195
KQL+QKTGL KRVLQ
Sbjct: 192 KQLSQKTGLPKRVLQ 206
>gi|307166315|gb|EFN60497.1| Protein apterous [Camponotus floridanus]
Length = 506
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 65/119 (54%), Gaps = 22/119 (18%)
Query: 77 PTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAG 136
P QKGRPRKRK S D+NA+ + +P
Sbjct: 339 PPPRQKGRPRKRKPKDLEAMTASLDLNADYIDMPFGRGGPGTP----------------- 381
Query: 137 NSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S+ RTKRMRTSFKHHQLRTMKSYF +N NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 382 -----GMPGSNSRTKRMRTSFKHHQLRTMKSYFALNHNPDAKDLKQLSQKTGLPKRVLQ 435
>gi|9409734|emb|CAB98128.1| LIM-homeobox 9 [Homo sapiens]
Length = 257
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 107 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 154
>gi|345306379|ref|XP_001506055.2| PREDICTED: LIM/homeobox protein Lhx9-like [Ornithorhynchus
anatinus]
Length = 303
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 171 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 218
>gi|345487077|ref|XP_001599660.2| PREDICTED: hypothetical protein LOC100114734 [Nasonia vitripennis]
Length = 644
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 67/115 (58%), Gaps = 19/115 (16%)
Query: 81 QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSP 140
QKGRPRKRK +D+ A + + L + + + G G
Sbjct: 469 QKGRPRKRK---------PKDLEAMTASLGESYL----------NADYIDMPFGRGGPGT 509
Query: 141 GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S+ RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 510 PGMPGSNSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 564
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI 52
I +SELVMRAR+LVFH+ CF+C +C + LTKGD FGMR+ + CR HYE+
Sbjct: 308 AILASELVMRARELVFHVRCFSCAACSVPLTKGDHFGMREGAVLCRLHYEM 358
>gi|143347140|gb|ABO93218.1| Lhx2 [Platynereis dumerilii]
Length = 280
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 64/120 (53%), Gaps = 29/120 (24%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+ IS++ELVMRAR+ VFH+ CFTC SC LT GD FGM+D +IYCR HYE L + G
Sbjct: 116 LAISANELVMRAREHVFHIGCFTCASCAKALTTGDYFGMKDHLIYCRSHYEHLMQGAFLG 175
Query: 61 SAEIEQPMSPRPAPWQPT--------------------TVQKGRPRKRKLSVDSPTPPSE 100
S P P AP P T QKGRPRKRK SP P S+
Sbjct: 176 S-----PNMPHGAPMSPCLSPGPHIPGPPPMPFYNGVGTTQKGRPRKRK----SPMPDSD 226
>gi|833753|gb|AAB46366.1| apterous homeodomain protein, partial [Junonia coenia]
Length = 196
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 47/55 (85%)
Query: 141 GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G + S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 74 GGXLGSTSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 128
>gi|47198904|emb|CAF87439.1| unnamed protein product [Tetraodon nigroviridis]
Length = 187
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 6/95 (6%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE-ILRHRDY- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E +++ DY
Sbjct: 79 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFESLVQGPDYH 138
Query: 59 --CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRK 89
AE+ P P+ T QKGRPRKRK
Sbjct: 139 AQLNFAELAAKGGGLPLPYFNGTGTAQKGRPRKRK 173
>gi|58372658|gb|AAW71489.1| apterous [Heliconius doris]
Length = 65
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/47 (91%), Positives = 44/47 (93%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 18 RTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 64
>gi|58372640|gb|AAW71480.1| apterous [Heliconius demeter]
gi|58372642|gb|AAW71481.1| apterous [Heliconius burneyi]
gi|58372644|gb|AAW71482.1| apterous [Heliconius hecuba]
gi|58372646|gb|AAW71483.1| apterous [Heliconius aoede]
gi|58372648|gb|AAW71484.1| apterous [Heliconius melpomene]
gi|58372650|gb|AAW71485.1| apterous [Heliconius numata numata]
gi|58372656|gb|AAW71488.1| apterous [Heliconius eleuchia]
Length = 65
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/47 (91%), Positives = 44/47 (93%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 18 RTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 64
>gi|159164230|pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
Protein Lhx9
Length = 80
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/45 (93%), Positives = 43/45 (95%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 8 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52
>gi|58372660|gb|AAW71490.1| apterous [Eueides vibilia]
gi|58372662|gb|AAW71491.1| apterous [Dryas iulia]
Length = 65
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/47 (91%), Positives = 44/47 (93%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 18 RTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 64
>gi|58372654|gb|AAW71487.1| apterous [Heliconius clysonymus]
Length = 65
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/47 (89%), Positives = 43/47 (91%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTKRMRTSFKHHQLR MKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 18 RTKRMRTSFKHHQLRXMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 64
>gi|358339076|dbj|GAA47203.1| LIM/homeobox protein Lhx2 [Clonorchis sinensis]
Length = 761
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 50/66 (75%)
Query: 130 SYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGL 189
++++ N+ PG + R KRMRTSFKHHQLR MK+YFN+N NPD KDLK L +KTGL
Sbjct: 522 TFDNVCLNNPPGYCIGMSTRQKRMRTSFKHHQLRAMKAYFNMNHNPDVKDLKVLTEKTGL 581
Query: 190 SKRVLQ 195
SKRVLQ
Sbjct: 582 SKRVLQ 587
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I EL++R++ VFH CF C C L GD + + D C H ++L
Sbjct: 187 IGPHELIIRSQSSVFHYVCFNCRQCNRALQPGDRYALIDGQPVC--HADLL 235
>gi|58372652|gb|AAW71486.1| apterous [Heliconius erato hydara]
Length = 65
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/47 (89%), Positives = 43/47 (91%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RTKRMRTSFKHHQLR MKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 18 RTKRMRTSFKHHQLRXMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 64
>gi|339262974|ref|XP_003367138.1| LIM/homeobox protein Lhx9 [Trichinella spiralis]
gi|316963223|gb|EFV48961.1| LIM/homeobox protein Lhx9 [Trichinella spiralis]
Length = 180
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Query: 120 GDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
D S+E S E+ +SS G + R KRMRTSFK QLRTMK+YF +N NPDAKD
Sbjct: 24 ADSDCSVEKSSEENSRCHSSSGMQI---MRPKRMRTSFKQQQLRTMKAYFQMNHNPDAKD 80
Query: 180 LKQLAQKTGLSKRVLQ 195
LKQLAQKTGL+KR+LQ
Sbjct: 81 LKQLAQKTGLTKRILQ 96
>gi|256085689|ref|XP_002579046.1| lim homeobox protein [Schistosoma mansoni]
Length = 375
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 48/65 (73%)
Query: 131 YESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLS 190
+E+ NS + R KRMRTSFKHHQLRTMK+YFNIN NPD KDLK L +KTGLS
Sbjct: 242 FENDCFNSGTNFYLGITTRQKRMRTSFKHHQLRTMKAYFNINHNPDVKDLKVLTEKTGLS 301
Query: 191 KRVLQ 195
KRVLQ
Sbjct: 302 KRVLQ 306
>gi|13509269|emb|CAC35215.1| Lhx2 protein [Xenopus laevis]
Length = 125
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 46 LGISASEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEY 103
>gi|324508533|gb|ADY43602.1| Insulin gene enhancer protein isl-2b [Ascaris suum]
Length = 452
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 6 SELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIE 65
++LVMRAR LV+H++CFTC+SC L G+ F ++D+ +YCR C IE
Sbjct: 110 TDLVMRARHLVYHVNCFTCLSCEKRLVPGEEFIIKDDELYCRAD---------CEPTNIE 160
Query: 66 QPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSS 125
QP S + + R DS T S D M + +T LHS
Sbjct: 161 QPSSIKTDIFG---------RDEDDCWDSSTLTSLD-----MHMAATPPLSLHSPKSDEV 206
Query: 126 MESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQ 185
+ + + S + +S ++T R+RT QL T+K+ + N PDA +QL +
Sbjct: 207 ITTTFHNSSSSSSGSTKKHKKDKQTTRVRTVLNEKQLMTLKTCYAANARPDALMKEQLVE 266
Query: 186 KTGLSKRVLQ 195
TGLS RV++
Sbjct: 267 MTGLSARVIR 276
>gi|487805|gb|AAA80274.1| LIM domain homeobox protein, partial [Danio rerio]
Length = 167
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 82/196 (41%), Gaps = 54/196 (27%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SS+LVMRARD V+H+ CF C C L GD F +RDE + CR + +L R G
Sbjct: 24 IGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRADHGLLMERASAG 83
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P P + RP L + P P + + N
Sbjct: 84 S------------PISPGNIHSSRP----LHIPEPVPVRQPPHRN--------------- 112
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
VH ++T R+RT QL T+++ +N N PDA
Sbjct: 113 ----------------------HVHKQSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALM 150
Query: 180 LKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 151 KEQLVEMTGLSPRVIR 166
>gi|324509239|gb|ADY43889.1| Insulin enhancer protein isl-2b [Ascaris suum]
Length = 427
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 6 SELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIE 65
++LVMRAR LV+H++CFTC+SC L G+ F ++D+ +YCR C IE
Sbjct: 110 TDLVMRARHLVYHVNCFTCLSCEKRLVPGEEFIIKDDELYCRAD---------CEPTNIE 160
Query: 66 QPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSS 125
QP S + + R DS T S D M + +T LHS
Sbjct: 161 QPSSIKTDIFG---------RDEDDCWDSSTLTSLD-----MHMAATPPLSLHSPKSDEV 206
Query: 126 MESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQ 185
+ + + S + +S ++T R+RT QL T+K+ + N PDA +QL +
Sbjct: 207 ITTTFHNSSSSSSGSTKKHKKDKQTTRVRTVLNEKQLMTLKTCYAANARPDALMKEQLVE 266
Query: 186 KTGLSKRVLQ 195
TGLS RV++
Sbjct: 267 MTGLSARVIR 276
>gi|34733877|gb|AAQ81871.1| LIM homeobox gene protein 9 [Ambystoma mexicanum]
Length = 120
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 70/147 (47%), Gaps = 33/147 (22%)
Query: 35 DLFGMRDEMIYCRPHYEILRHRD------YCGSAEIEQPMSPRPAPWQPTTVQKGRPRKR 88
D FGM+D ++YCR H+E L D Y A ++ P TVQKGRPRKR
Sbjct: 1 DHFGMKDSLVYCRAHFEALLQGDYHPQLSYTELAAKGGGLATMPYFNGTGTVQKGRPRKR 60
Query: 89 KLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQ 148
K P+ +++ G +S + S P S Q
Sbjct: 61 K-------------------SPALGVDI---GSYNSGCNENDTDLDRDQSYPPS-----Q 93
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNP 175
+TKRMRTSFKHHQLRTMKSYF IN NP
Sbjct: 94 KTKRMRTSFKHHQLRTMKSYFAINHNP 120
>gi|18858907|ref|NP_571045.1| insulin gene enhancer protein isl-2a [Danio rerio]
gi|1708561|sp|P53406.1|ISL2A_DANRE RecName: Full=Insulin gene enhancer protein isl-2a; Short=Islet-2A;
AltName: Full=Insulin gene enhancer protein isl-2;
Short=Islet-2
gi|871001|emb|CAA61283.1| Islet-2 protein [Danio rerio]
gi|1037166|dbj|BAA07484.1| zfIsl-2 [Danio rerio]
gi|190336908|gb|AAI62631.1| Islet2a [Danio rerio]
gi|190339440|gb|AAI62833.1| Islet2a [Danio rerio]
Length = 359
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 82/196 (41%), Gaps = 54/196 (27%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SS+LVMRARD V+H+ CF C C L GD F +RDE + CR + +L R G
Sbjct: 94 IGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRADHGLLMERASAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P P + RP L + P P + + N
Sbjct: 154 S------------PISPGNIHSSRP----LHIPEPVPVRQPPHRN--------------- 182
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
VH ++T R+RT QL T+++ +N N PDA
Sbjct: 183 ----------------------HVHKQSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALM 220
Query: 180 LKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 221 KEQLVEMTGLSPRVIR 236
>gi|328925120|dbj|BAK19075.1| Bmptp-Z and Bmap-A fusion protein beta [Bombyx mori]
Length = 444
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
IS+SELVMRARDLVFH+HCF+C C L KGD +G+RD +YCR HYE +
Sbjct: 201 ISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETM 251
>gi|348500124|ref|XP_003437623.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oreochromis
niloticus]
Length = 360
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 82/195 (42%), Gaps = 51/195 (26%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+E + CR + +L R G
Sbjct: 94 LGFSSSDLVMRARDNVYHIECFRCSVCSRQLLPGDEFSLREEELLCRADHSLLLERSSAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P P + RP L+ D P T + H
Sbjct: 154 S------------PVSPGHIHSNRP--LHLAAD----------------PVTVRQAPHRN 183
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ E +T R+RT QL T+++ +N N PDA
Sbjct: 184 HVHKQSE---------------------KTTRVRTVLNEKQLHTLRTCYNANPRPDALMK 222
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 223 EQLVEMTGLSPRVIR 237
>gi|328925130|dbj|BAK19080.1| apterous A splicing isoform type C [Bombyx mori]
Length = 385
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
IS+SELVMRARDLVFH+HCF+C C L KGD +G+RD +YCR HYE +
Sbjct: 133 ISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETM 183
>gi|348555669|ref|XP_003463646.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Cavia
porcellus]
Length = 371
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 80/198 (40%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD VFH+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVFHVECFRCAVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P R L + P P
Sbjct: 154 S-----PRSPGPIPG-----------ARALHLPEPVP----------------------- 174
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
P H H ++T R+RT QL T+++ + N PDA
Sbjct: 175 ----------------GQQPALRPHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|328925116|dbj|BAK19073.1| apterous A splicing isoform type A [Bombyx mori]
Length = 376
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
IS+SELVMRARDLVFH+HCF+C C L KGD +G+RD +YCR HYE +
Sbjct: 133 ISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETM 183
>gi|110339157|gb|ABG67842.1| LHX29, partial [Nematostella vectensis]
Length = 60
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/45 (82%), Positives = 42/45 (93%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR+RTSFKHHQLR MK+YF +N NPDAKDLKQL+QKTGL+KRVLQ
Sbjct: 2 KRVRTSFKHHQLRAMKTYFAMNHNPDAKDLKQLSQKTGLTKRVLQ 46
>gi|353228649|emb|CCD74820.1| hypothetical protein Smp_003280 [Schistosoma mansoni]
Length = 1008
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 41/47 (87%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+ KR+RTSFKH QLR MKSYF + NPD+KDLKQL+QKTGLSKRVLQ
Sbjct: 821 KIKRIRTSFKHQQLRIMKSYFEFSHNPDSKDLKQLSQKTGLSKRVLQ 867
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 1 MGISSSELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH 49
+ ++ ++L+ + D ++H CFTC +CG LL GD + + ++ I C H
Sbjct: 314 IKLNKNDLIFQVNYDTLYHESCFTCYTCGRLLKYGDTYILENQTIQCSSH 363
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+HL+C C CGI L ++++M++CR HY+ L CG
Sbjct: 270 WHLNCLRCYKCGITLQWEKTCFVKNDMVFCREHYKRLSSCFRCG 313
>gi|143347423|gb|ABO93221.1| Islet [Platynereis dumerilii]
Length = 414
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 39/192 (20%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
S ++ VMRAR+ ++H+ CF C++C L GD F +RD+ ++C+ +E+L
Sbjct: 91 FSKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALRDDGLFCKSDHEVL--------- 141
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+R + +PTP + + N N + ++ +G +
Sbjct: 142 ------------------------ERAQNGATPTPENNNNNVNALNNNEKEIKTEKTGSI 177
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
S ++ G+ SG S + R+RT QL T+++ +N N PDA +Q
Sbjct: 178 KSG------QAEHGSRRGNSGHKSEHKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQ 231
Query: 183 LAQKTGLSKRVL 194
L + TGLS RV+
Sbjct: 232 LTEMTGLSPRVI 243
>gi|332844416|ref|XP_003314842.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Pan
troglodytes]
gi|426379890|ref|XP_004056620.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Gorilla
gorilla gorilla]
Length = 360
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 85/198 (42%), Gaps = 57/198 (28%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P+
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLPA--------- 171
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
++G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 172 -----------DAGSGR-QPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 219
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 220 LMKEQLVEMTGLSPRVIR 237
>gi|149041730|gb|EDL95571.1| insulin related protein 2 (islet 2) [Rattus norvegicus]
Length = 359
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 56/197 (28%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAG-NSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
++G+G SS + VH ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DAGSGRQSSLRTHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDAL 219
Query: 179 DLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 220 MKEQLVEMTGLSPRVIR 236
>gi|270004905|gb|EFA01353.1| apterous [Tribolium castaneum]
Length = 386
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 58/113 (51%), Gaps = 26/113 (23%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI---------- 52
I SSELVMRARDLVFH+HCF+C C LTKGD FGMRD + CR H+E+
Sbjct: 62 IISSELVMRARDLVFHVHCFSCAVCNSPLTKGDHFGMRDGAVLCRLHFEMPVTEPLPPGM 121
Query: 53 ----LRHRDYCGSAEIEQPMSPRPAPWQ-----------PTTV-QKGRPRKRK 89
+ H + P P P + PTT QKGRPRKRK
Sbjct: 122 FPPGMHHYPPPFPSPEFHHQIPPPTPVESIGKVPFFNGAPTTPRQKGRPRKRK 174
>gi|154146254|ref|NP_081673.2| insulin gene enhancer protein ISL-2 [Mus musculus]
gi|408360153|sp|Q9CXV0.2|ISL2_MOUSE RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|148693907|gb|EDL25854.1| insulin related protein 2 (islet 2) [Mus musculus]
gi|183396835|gb|AAI65972.1| Insulin related protein 2 (islet 2) [synthetic construct]
Length = 359
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 84/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
++G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DAGSGR-QPSLRTHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|348505840|ref|XP_003440468.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oreochromis
niloticus]
Length = 359
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 82/195 (42%), Gaps = 52/195 (26%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
MG SS+LVMRARD V+H+ CF C C L GD F +RD+ + CR + ++ R G
Sbjct: 94 MGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDDELLCRADHGLMMERASAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP G R L + P +R P +H
Sbjct: 154 S-----PLSP------------GNIHNRPLHISDPVS---------VRHPPHHRNHVHK- 186
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
++T R+RT QL T+++ +N N PDA
Sbjct: 187 -------------------------PSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMK 221
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 222 EQLVEMTGLSPRVIR 236
>gi|344284256|ref|XP_003413884.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein
ISL-2-like [Loxodonta africana]
Length = 356
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 83/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 91 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 150
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P
Sbjct: 151 S-----PRSPGPLP----------------------------GARGLHLP---------- 167
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
+ GAG P H H ++T R+RT QL T+++ + N PDA
Sbjct: 168 -----------DPGAGR-QPSLRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 215
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 216 LMKEQLVEMTGLSPRVIR 233
>gi|260828933|ref|XP_002609417.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
gi|229294773|gb|EEN65427.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
Length = 292
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 69/193 (35%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I S++ V RA+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 119 IQSNDWVRRAKTHVYHLACFACDACKRQLSTGEEFALHDGKVLCKSHY------------ 166
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
E ++A + + L+SG+
Sbjct: 167 ------------------------------------LEAMDAAAGSGNGSDCDSLYSGE- 189
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
SG+G P KR+RT+F QLR +++ FNI+ NPD +DL++
Sbjct: 190 ----------SGSGGHRP----------KRVRTTFTEEQLRVLQANFNIDSNPDGQDLER 229
Query: 183 LAQKTGLSKRVLQ 195
+AQ TGLSKRV Q
Sbjct: 230 IAQITGLSKRVTQ 242
>gi|403304939|ref|XP_003943036.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 360
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 84/198 (42%), Gaps = 57/198 (28%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P+
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLPA--------- 171
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
+ G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 172 -----------DPGSGR-QPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 219
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 220 LMKEQLVEMTGLSPRVIR 237
>gi|431920332|gb|ELK18367.1| Insulin protein enhancer protein ISL-2 [Pteropus alecto]
Length = 306
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 83/198 (41%), Gaps = 59/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R
Sbjct: 98 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLER---- 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
A P SP P P A + +P
Sbjct: 154 -AAATSPSSPGPLP-----------------------------ARGLHLP---------- 173
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
+ GAG P H+H ++T R+RT QL T+++ + N PDA
Sbjct: 174 -----------DPGAGR-QPAPRPHAHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 221
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 222 LMKEQLVEMTGLSPRVIR 239
>gi|21956641|ref|NP_665804.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
gi|114658283|ref|XP_001147206.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Pan
troglodytes]
gi|297697192|ref|XP_002825752.1| PREDICTED: insulin gene enhancer protein ISL-2 [Pongo abelii]
gi|426379888|ref|XP_004056619.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Gorilla
gorilla gorilla]
gi|20978495|sp|Q96A47.1|ISL2_HUMAN RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|15080438|gb|AAH11967.1| ISL LIM homeobox 2 [Homo sapiens]
gi|15082435|gb|AAH12136.1| ISL LIM homeobox 2 [Homo sapiens]
gi|119619626|gb|EAW99220.1| ISL2 transcription factor, LIM/homeodomain, (islet-2) [Homo
sapiens]
gi|167773881|gb|ABZ92375.1| ISL LIM homeobox 2 [synthetic construct]
gi|193785483|dbj|BAG50849.1| unnamed protein product [Homo sapiens]
Length = 359
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 84/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
++G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DAGSGR-QPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|402874959|ref|XP_003901290.1| PREDICTED: insulin gene enhancer protein ISL-2 [Papio anubis]
Length = 350
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 84/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 85 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 144
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P + + +P
Sbjct: 145 S-----PRSPGPLP----------------------------GSRGLHLP---------- 161
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
++G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 162 -----------DAGSGR-QPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 209
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 210 LMKEQLVEMTGLSPRVIR 227
>gi|196000228|ref|XP_002109982.1| hypothetical protein TRIADDRAFT_14836 [Trichoplax adhaerens]
gi|190588106|gb|EDV28148.1| hypothetical protein TRIADDRAFT_14836, partial [Trichoplax
adhaerens]
Length = 215
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 85/195 (43%), Gaps = 14/195 (7%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC-----GSA 62
L ++ D +H+ C C C L K ++ I+CR Y C G +
Sbjct: 14 LGIQKTDKKWHIQCLRCYDCNEPLDKDQSCYVKQGNIFCRTDYFNRFGSIKCPTCNSGIS 73
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
E M R + + + + E+ ++ + D
Sbjct: 74 PKEHVMKAREYAYHCSCFICH-------TCNRLLKTGEEFAMRGCKLYCKEHFQSITSDH 126
Query: 123 SSSMESLSYESGAGNSSPGSG--VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S S SG + S S H R+KR+RTSFK QLRTMK+YF +N NPD+KDL
Sbjct: 127 RHSHHSNKDNSGENHDSSNSNDITDEHGRSKRIRTSFKQPQLRTMKTYFALNHNPDSKDL 186
Query: 181 KQLAQKTGLSKRVLQ 195
KQL+ KTGL+KRVLQ
Sbjct: 187 KQLSIKTGLNKRVLQ 201
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR--HRDYC 59
GIS E VM+AR+ +H CF C +C LL G+ F MR +YC+ H++ + HR
Sbjct: 71 GISPKEHVMKAREYAYHCSCFICHTCNRLLKTGEEFAMRGCKLYCKEHFQSITSDHRHSH 130
Query: 60 GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHS 119
S + + + T + GR ++ + S P +R T + H+
Sbjct: 131 HSNKDNSGENHDSSNSNDITDEHGRSKRIRTSFKQPQ----------LRTMKTYFALNHN 180
Query: 120 GDLSSSMESLSYESG 134
D S ++ LS ++G
Sbjct: 181 PD-SKDLKQLSIKTG 194
>gi|167859072|gb|ACA04471.1| Lhx2 [Strongylocentrotus purpuratus]
Length = 251
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 62/120 (51%), Gaps = 31/120 (25%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL------- 53
+GI S E+VMRAR+LV+HL CF+C C + L GD +GMR+ ++YC+ HYE L
Sbjct: 118 VGIESHEMVMRARELVYHLACFSCAVCNLELHTGDYYGMRENLVYCQLHYETLFVPSSDQ 177
Query: 54 --RHRDYCGSAEIEQP----MSP-------RPAPWQPTT-----------VQKGRPRKRK 89
H + S QP +SP P P P+T + KGRPRKRK
Sbjct: 178 STYHHLHHASPPPPQPTLHNLSPSYHTHGGSPNPGAPSTGHPFFQNGLSPIHKGRPRKRK 237
>gi|149691761|ref|XP_001490268.1| PREDICTED: insulin gene enhancer protein ISL-2 [Equus caballus]
Length = 359
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 84/197 (42%), Gaps = 56/197 (28%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAG-NSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
+ GAG +S VH ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DPGAGRQASLRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDAL 219
Query: 179 DLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 220 MKEQLVEMTGLSPRVIR 236
>gi|403304937|ref|XP_003943035.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 359
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 83/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
+ G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DPGSGR-QPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|1708558|sp|P50212.1|ISL2B_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2B; Short=Islet-2B
gi|64209|emb|CAA46102.1| isl-1 [Oncorhynchus tshawytscha]
gi|1094403|prf||2106150A LIM domain homeobox protein
Length = 340
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 81/198 (40%), Gaps = 59/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SS+LVMRARD V+H+ CF C C L GD F +RDE + CR + +L R G
Sbjct: 76 IGFCSSDLVMRARDNVYHMECFRCSVCSRQLVPGDEFSLRDEELLCRADHGLLLERASAG 135
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP G R + P + + N
Sbjct: 136 S-----PISP------------GNILSRSFHIADPVSVRQPPHRN--------------- 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQ---RTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
H H+ +T R+RT QL T+++ +N N PDA
Sbjct: 164 ------------------------HVHKQSEKTTRVRTVLNEKQLHTLRTCYNANPRPDA 199
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 200 LMKEQLVEMTGLSPRVIR 217
>gi|426248250|ref|XP_004017877.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Ovis aries]
Length = 366
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 83/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
+ G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DPGSGR-QPSLRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|109081997|ref|XP_001105068.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Macaca
mulatta]
Length = 359
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 84/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P + + +P
Sbjct: 154 S-----PRSPGPLP----------------------------GSRGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
++G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DAGSGR-QPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|296475432|tpg|DAA17547.1| TPA: ISL LIM homeobox 2 [Bos taurus]
gi|440909295|gb|ELR59218.1| Insulin enhancer protein ISL-2 [Bos grunniens mutus]
Length = 359
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 83/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
+ G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DPGSGR-QPSLRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|410922098|ref|XP_003974520.1| PREDICTED: insulin gene enhancer protein isl-1-like [Takifugu
rubripes]
Length = 331
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +RD+ ++CR ++++
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRDDGLFCRADHDVVER----A 139
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP + RP
Sbjct: 140 SLASGDPLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S +P H H ++T R+RT QL T+++ +N N PDA
Sbjct: 156 -LQMAAEPVSAR------TPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYNANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|395501088|ref|XP_003754930.1| PREDICTED: insulin gene enhancer protein ISL-2 [Sarcophilus
harrisii]
Length = 335
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 84/199 (42%), Gaps = 59/199 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRAR+ V+H+ CF C C L GD F +R+ + CR + +L R
Sbjct: 69 VGFSSSDLVMRARENVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHSLLLDR---- 124
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
A E P SP G
Sbjct: 125 -ASAESPRSP-------------------------------------------------G 134
Query: 121 DLSSSME-SLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
L+SS LS E G+G P H H ++T R+RT QL T+++ + N PD
Sbjct: 135 HLASSRSLHLSAEPGSGR-QPSLRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPD 193
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
A +QL + TGLS RV++
Sbjct: 194 ALMKEQLVEMTGLSPRVIR 212
>gi|1708557|sp|P53408.1|ISL2A_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2A; Short=Islet-2A
Length = 358
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 82/196 (41%), Gaps = 55/196 (28%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SS+LVMRARD V+H+ CF C C L GD F +RDE + CR + +L + G
Sbjct: 94 IGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRADHGLLMEQASAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP G R L + P + + N
Sbjct: 154 S-----PLSP------------GIIHSRSLHIADPVSVRQPPHRN--------------- 181
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
VH ++T R+RT QL T+++ +N N PDA
Sbjct: 182 ----------------------HVHKQSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALM 219
Query: 180 LKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 220 KEQLVEMTGLSPRVIR 235
>gi|158299279|ref|XP_319393.4| AGAP010209-PA [Anopheles gambiae str. PEST]
gi|157014289|gb|EAA13793.5| AGAP010209-PA [Anopheles gambiae str. PEST]
Length = 451
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRD-EMIYCRPHYEILRHRDYCGS 61
S ++ VMRA+ ++H+ CF C +C L GD F +RD +YC+ ++ L G
Sbjct: 125 FSKNDFVMRAKTKIYHIECFRCSACARQLIPGDEFALRDGGSLYCKEDHDHLEKSSQNGL 184
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ A Q +QK K SP+ NANV+ + SG
Sbjct: 185 VQ--------GAGKQERRIQKNNKHTNKRQ-SSPS------NANVVHVNQN------SGS 223
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S S +SL G G S P G + R+RT QL T+++ +N N PDA +
Sbjct: 224 ESGSHKSL---RGKGPSGPSDG-----KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKE 275
Query: 182 QLAQKTGLSKRVLQ 195
QL + TGLS RV++
Sbjct: 276 QLVEMTGLSPRVIR 289
>gi|410912158|ref|XP_003969557.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Takifugu
rubripes]
Length = 359
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 82/195 (42%), Gaps = 52/195 (26%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+E + CR + IL + G
Sbjct: 94 LGFSSSDLVMRARDHVYHIECFRCSVCSRQLLPGDEFSLREEELLCRADHSILLEKSSAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+P P + R LH
Sbjct: 154 ------------SPISPGHLHSNR-------------------------------ALHLT 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
D SM ++ + S ++T R+RT QL T+++ +N N PDA
Sbjct: 171 D-PVSMRQATHRNHVHKQS--------EKTTRVRTVLNEKQLHTLRTCYNANPRPDALMK 221
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 222 EQLVEMTGLSPRVIR 236
>gi|410908008|ref|XP_003967483.1| PREDICTED: insulin gene enhancer protein ISL-2A-like [Takifugu
rubripes]
Length = 359
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 84/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
MG SS+LVMRARD V+H+ CF C C L GD F +R++ + CR + +L R G
Sbjct: 94 MGFCSSDLVMRARDSVYHMECFRCSVCCRHLLPGDEFSLREDELLCRADHCLLMERASAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP G R L + +A +R P
Sbjct: 154 S-----PLSP------------GTIHSRPLHIS---------DAVTVRHP---------- 177
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
P H H ++T R+RT QL T+++ +N N PDA
Sbjct: 178 -------------------PHHRNHGHKQSEKTTRIRTVLTEKQLHTLRTCYNANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVVR 236
>gi|47225812|emb|CAF98292.1| unnamed protein product [Tetraodon nigroviridis]
Length = 360
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 83/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SS+LVMRARD V+H+ CF C C L GD F +R++ + CR + +L R G
Sbjct: 94 VGFCSSDLVMRARDNVYHMECFRCSVCCRHLLPGDEFSLREDELLCRADHCLLMERASAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP P +P + +SV P
Sbjct: 154 S-----PLSPGPIHSRPLHISDA------VSVRHP------------------------- 177
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
P H H ++T R+RT QL T+++ +N N PDA
Sbjct: 178 -------------------PHHRNHVHKQSEKTTRIRTVLTEKQLHTLRTCYNANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVVR 236
>gi|241753304|ref|XP_002401116.1| lim homeobox protein, putative [Ixodes scapularis]
gi|215508341|gb|EEC17795.1| lim homeobox protein, putative [Ixodes scapularis]
Length = 95
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%)
Query: 153 MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
MRTSFKH QLR MK+YF +N NPD+KDLKQL+ +TGLSKRVLQ
Sbjct: 1 MRTSFKHSQLRAMKAYFTVNHNPDSKDLKQLSARTGLSKRVLQ 43
>gi|296236843|ref|XP_002763501.1| PREDICTED: insulin gene enhancer protein ISL-2 [Callithrix jacchus]
Length = 359
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 82/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLER---- 149
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
A + P SP P P R L + P
Sbjct: 150 -AAADSPRSPGPLPG-----------ARGLHLSDP------------------------- 172
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 173 -------------GSGR-QPTLRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|291410745|ref|XP_002721643.1| PREDICTED: ISL LIM homeobox 2 [Oryctolagus cuniculus]
Length = 359
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 79/198 (39%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFGSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P R L + P P
Sbjct: 154 S-----PRSPGPLPG-----------ARGLHLPDPGP----------------------- 174
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
P H H ++T R+RT QL T+++ + N PDA
Sbjct: 175 ----------------GRQPTLRPHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|12851555|dbj|BAB29088.1| unnamed protein product [Mus musculus]
Length = 359
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P +P P P A + +P
Sbjct: 154 S-----PRTPGPLP----------------------------GARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVH---SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
++G+G P H ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DAGSGR-QPSLRTHVDKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|291237424|ref|XP_002738638.1| PREDICTED: Lim homeobox transcription factor [Saccoglossus
kowalevskii]
Length = 441
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 88/195 (45%), Gaps = 41/195 (21%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+S+ELVMRA V+HL CF CI C L KGD F +RD ++C+ YE ++Y GS
Sbjct: 107 ITSNELVMRALCNVYHLRCFNCIICNQRLQKGDEFVVRDNQLFCKVDYE----KEY-GSV 161
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
++ P SED +++V+ E +
Sbjct: 162 QLSSPQGHH---------------------------SED-DSDVID------EGYLDNSV 187
Query: 123 SSSMESLSYESGAGNS--SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S++M+ S NS + G+G + KR RT Q R K F ++Q P K
Sbjct: 188 SNTMDDNSGNDSDTNSTDTKGNGGDGRKGPKRPRTILTTAQRRAFKQSFEVSQKPCRKVR 247
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA TGLS RV+Q
Sbjct: 248 ESLAADTGLSVRVVQ 262
>gi|126272190|ref|XP_001362509.1| PREDICTED: insulin gene enhancer protein ISL-2 [Monodelphis
domestica]
Length = 359
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 81/198 (40%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRAR+ V+H+ CF C C L GD F +RD + CR + +L R
Sbjct: 94 VGFSSSDLVMRARENVYHIECFRCSVCSRQLLPGDEFSLRDHELLCRADHSLLLDR---- 149
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
A E P SP G
Sbjct: 150 -ASGESPRSP-------------------------------------------------G 159
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L SS E G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 160 HLPSSRGLHLSEPGSGR-QPSLRAHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|432852914|ref|XP_004067448.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oryzias
latipes]
Length = 284
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 51/195 (26%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +++ + CR + +L R G
Sbjct: 40 LGFSSSDLVMRARDNVYHIECFRCSMCSRQLLPGDEFSLQEGDLLCRADHSMLLERTSAG 99
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P P + RP ++ D P T + H
Sbjct: 100 S------------PISPGHIHSNRP--LHMAAD----------------PVTVRQAPHRN 129
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ E +T R+RT QL T+++ +N N PDA
Sbjct: 130 HVHKQSE---------------------KTTRVRTVLNEKQLHTLRTCYNANPRPDALMK 168
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 169 EQLVEMTGLSPRVIR 183
>gi|300795417|ref|NP_001178166.1| insulin gene enhancer protein ISL-2 [Bos taurus]
Length = 359
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P SP P P A + +P
Sbjct: 154 S-----PRSPGPLP----------------------------GARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
+ G+G P H H ++T R+RT QL T+++ + N PDA
Sbjct: 171 -----------DPGSGR-QPSLRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+ L + TGLS RV++
Sbjct: 219 LMKEHLVEMTGLSPRVIR 236
>gi|170032117|ref|XP_001843929.1| lim homeobox protein [Culex quinquefasciatus]
gi|167871878|gb|EDS35261.1| lim homeobox protein [Culex quinquefasciatus]
Length = 453
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI-------LRH 55
I + ELVMRA D VFHL CF C+ CGI L KGD + ++ ++CRP YE +
Sbjct: 73 IGADELVMRALDNVFHLKCFICVVCGIRLQKGDQYVIKQSQLFCRPDYEKEVEMFQGYNY 132
Query: 56 RDYCGSAEIEQPMSPRPAPWQPTTV---QKGRPRKRKLSVDSPTP 97
DYC + + R P +P T+ Q+ R K V SP P
Sbjct: 133 DDYCCDDIFQTRIDGRRGPKRPRTILTTQQRRAFKASFEV-SPKP 176
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC 59
+M+ D+ +H +C C SC I L MRD +YCR YE L R+ C
Sbjct: 18 IMKVVDISYHENCLQCTSCAIRLMHSCF--MRDGKLYCRFDYERLYGRNRC 66
>gi|158292635|ref|XP_314022.4| AGAP005138-PA [Anopheles gambiae str. PEST]
gi|157017084|gb|EAA44525.4| AGAP005138-PA [Anopheles gambiae str. PEST]
Length = 456
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI-------LRH 55
I + ELVMRA D VFHL CF C+ CG+ L KGD + ++ ++CRP YE +
Sbjct: 217 IGADELVMRALDNVFHLKCFICVVCGVRLQKGDQYVIKQSQLFCRPDYEKEVEMFQGYSY 276
Query: 56 RDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTL 114
DYC + + R P +P T+ + R+ K S D P I + + ++
Sbjct: 277 DDYCCDDMFQTRIDGRRGPKRPRTILTTQQRRAFKASFDISPKPCRKIREGLAKDTGLSI 336
Query: 115 EMLH 118
++
Sbjct: 337 RIVQ 340
Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC 59
+M+ D+ +H C C SC I L MRD +YCR YE L R+ C
Sbjct: 162 IMKVVDITYHERCLQCTSCSIRLMHSCF--MRDGKLYCRFDYERLYGRNRC 210
>gi|18858905|ref|NP_571037.1| insulin gene enhancer protein isl-1 [Danio rerio]
gi|1708559|sp|P53405.1|ISL1_DANRE RecName: Full=Insulin gene enhancer protein isl-1; Short=Islet-1
gi|497898|dbj|BAA04670.1| insulin gene enhancer binding protein [Danio rerio]
gi|38173895|gb|AAH60892.1| Isl1 protein [Danio rerio]
Length = 349
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERATMG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ +N N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYNANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|308097158|gb|ADO14133.1| ISL1 transcription factor [Notophthalmus viridescens]
Length = 349
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF+C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFSCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+A+ P+SP + RP
Sbjct: 143 AAD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|26355418|dbj|BAC41153.1| unnamed protein product [Mus musculus]
Length = 349
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++++ N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTWYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|160420135|ref|NP_001104188.1| ISL LIM homeobox 1 [Xenopus laevis]
gi|115528275|gb|AAI24895.1| LOC100126604 protein [Xenopus laevis]
gi|144952770|gb|ABP04039.1| islet-1 [Xenopus laevis]
gi|213626865|gb|AAI70282.1| Islet-1 [Xenopus laevis]
Length = 354
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGG 143
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP + GRP + +E I A
Sbjct: 144 S----DPLSP---------LHPGRPLQMA---------AEPICAR--------------- 166
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
P H H ++T R+RT QL T+++ + N PDA
Sbjct: 167 ------------------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|432861700|ref|XP_004069695.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oryzias
latipes]
Length = 358
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
G SS+LVMRAR+ V+H+ CF C C L GD F +R++ + CR ++++L R GS
Sbjct: 95 GFCSSDLVMRAREKVYHMECFRCSVCSRHLLPGDEFSLREDELLCRANHDLLE-RASAGS 153
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
P+SP KR L + P +R PS +H
Sbjct: 154 -----PLSP------------DNLHKRTLHISDPIS---------VRHPSHHRNHVHK-- 185
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
++T R+RT QL T+++ +N N PDA +
Sbjct: 186 ------------------------QSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKE 221
Query: 182 QLAQKTGLSKRVLQ 195
QL + TGLS RV++
Sbjct: 222 QLVEMTGLSPRVIR 235
>gi|348539204|ref|XP_003457079.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
[Oreochromis niloticus]
Length = 349
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ P+SP + RP
Sbjct: 143 PGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQ---RTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H+ +T R+RT QL T+++ +N N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYNANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|157118342|ref|XP_001653180.1| lim homeobox protein [Aedes aegypti]
gi|108883303|gb|EAT47528.1| AAEL001380-PA [Aedes aegypti]
Length = 387
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI-------LRH 55
I + ELVMRA D VFHL CF C+ CG+ L KGD + ++ ++CRP YE +
Sbjct: 193 IGADELVMRALDNVFHLKCFICVVCGVRLQKGDQYVIKQSQLFCRPDYEKEVEMLQGYNY 252
Query: 56 RDYCGSAEIEQPMSPRPAPWQPTTV---QKGRPRKRKLSVDSPTP 97
DYC + + R P +P T+ Q+ R K + SP P
Sbjct: 253 DDYCCDDIFQTRIDGRRGPKRPRTILTTQQRRAFKASFEI-SPKP 296
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC 59
+M+ D+ +H C C SC I L MRD +YCR YE L R+ C
Sbjct: 138 IMKVVDISYHERCLQCTSCAIRLMHSCF--MRDGKLYCRFDYERLYGRNRC 186
>gi|209737368|gb|ACI69553.1| Insulin gene enhancer protein isl-1 [Salmo salar]
Length = 356
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 52/195 (26%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERATMG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S + P+ P R +++ D + + +V + P T
Sbjct: 143 SGDPLSPLHP--------------ARPLQMAADPISARQPALRPHVHKQPEKT------- 181
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
R+RT QL T+++ +N N PDA
Sbjct: 182 ------------------------------TRVRTVLNEKQLHTLRTCYNANPRPDALMK 211
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 212 EQLVEMTGLSPRVIR 226
>gi|348539206|ref|XP_003457080.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
[Oreochromis niloticus]
Length = 357
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ P+SP + RP
Sbjct: 143 PGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQ---RTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H+ +T R+RT QL T+++ +N N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYNANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|312370934|gb|EFR19232.1| hypothetical protein AND_22855 [Anopheles darlingi]
Length = 919
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI-------LRH 55
I + ELVMRA D VFHL CF C+ CG+ L KGD + ++ ++CRP YE +
Sbjct: 55 IGADELVMRALDNVFHLKCFICVVCGVRLQKGDQYVIKQSQLFCRPDYEKEVEMFQGYSY 114
Query: 56 RDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
DYC + + R P +P T+ + R+ K S D SP P
Sbjct: 115 DDYCCDDMFQTRIDGRRGPKRPRTILTTQQRRAFKASFDISPKP 158
>gi|70570020|dbj|BAE06522.1| transcription factor protein [Ciona intestinalis]
Length = 402
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 42/195 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+ S ++ VMRARD ++H+ CF C++C L GD F +RD+ ++C+ +E+ D
Sbjct: 107 LCFSKNDFVMRARDKIYHIQCFKCVACSRQLIPGDEFALRDDGLFCKADHEVATSGD--- 163
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
M P Q P+ V SP E +
Sbjct: 164 -------MMVHDGHMIPGIPQTPNPQ----GVISPQMGGERV------------------ 194
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+S+ SG S G +T R+RT QL T+++ + N PDA
Sbjct: 195 --------ISHRSGG--HSGGQRRSKDAKTTRVRTVLNEKQLHTLRTCYAANCRPDALMK 244
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 245 EQLTEMTGLSSRVIR 259
>gi|426246540|ref|XP_004017051.1| PREDICTED: insulin gene enhancer protein ISL-1 [Ovis aries]
Length = 349
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P++P RP
Sbjct: 143 AGDPLSPLNP------------ARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|74096249|ref|NP_001027767.1| LIM homeodomain protein [Ciona intestinalis]
gi|3150146|emb|CAA06919.1| LIM homeodomain protein [Ciona intestinalis]
Length = 381
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 42/195 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+ S ++ VMRARD ++H+ CF C++C L GD F +RD+ ++C+ +E+ D
Sbjct: 86 LCFSKNDFVMRARDKIYHIQCFKCVACSRQLIPGDEFALRDDGLFCKADHEVATSGD--- 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
M P Q P+ V SP E +
Sbjct: 143 -------MMVHDGHMIPGIPQTPNPQ----GVISPQMGGERV------------------ 173
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+S+ SG S G +T R+RT QL T+++ + N PDA
Sbjct: 174 --------ISHRSGG--HSGGQRRSKDAKTTRVRTVLNEKQLHTLRTCYAANCRPDALMK 223
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 224 EQLTEMTGLSSRVIR 238
>gi|358335415|dbj|GAA53940.1| LIM homeobox protein 2/9 [Clonorchis sinensis]
Length = 506
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+++KR+RTSFKH Q+ TMK +F+ NQNPD+KDLK+L+ TGLSKRVLQ
Sbjct: 279 EKSKRIRTSFKHDQIHTMKLFFDKNQNPDSKDLKELSIATGLSKRVLQ 326
>gi|440808054|gb|AGC24170.1| islet, partial [Lymnaea stagnalis]
Length = 189
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 1 MGISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC 59
+G ++VMR + V+HL+CF CI C L GD F +RD+ ++CR ++++ R
Sbjct: 13 LGFCREDVVMRPTKGTVYHLNCFRCIVCNKPLVTGDEFAIRDDGLFCRADHDVI-DRSVT 71
Query: 60 GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHS 119
GS P P + G + N N + HS
Sbjct: 72 GS--------PCQDIGSPGSAYSG----------NNNNAGVCNNNNNQNSLNNNSNSNHS 113
Query: 120 -GDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
G L ES +SG G S S +T R+RT QL T+++ +N N PDA
Sbjct: 114 TGSLGKDTES--KKSGRGEKSSRGSHKSDHKTTRVRTVLNEKQLHTLRTCYNANPRPDAL 171
Query: 179 DLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 172 MKEQLTEMTGLSPRVIR 188
>gi|194223906|ref|XP_001916580.1| PREDICTED: insulin gene enhancer protein ISL-1 [Equus caballus]
Length = 349
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRAEHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|345304657|ref|XP_001508080.2| PREDICTED: insulin gene enhancer protein ISL-1-like
[Ornithorhynchus anatinus]
Length = 382
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 117 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 175
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 176 AGD---PLSP---------LHPARP----------------------------------- 188
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 189 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 241
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 242 LMKEQLVEMTGLSPRVIR 259
>gi|44194074|gb|AAS46773.1| insulin enhancer binding protein [Rattus norvegicus]
Length = 326
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTRYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|339252354|ref|XP_003371400.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
gi|316968379|gb|EFV52660.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
Length = 1751
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 26/213 (12%)
Query: 6 SELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI- 64
++ VMRA++ ++H+ CF C+ C L GD F +R +YC+ YE+ C S E
Sbjct: 1390 NDYVMRAKNNLYHISCFKCVVCTRPLLPGDEFALRHIALYCKADYELAERNSLCLSTETS 1449
Query: 65 -EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLS 123
E + A Q T P + T ++ + + + +L+ G +
Sbjct: 1450 NESQLEEHSADVQATLNALHHPSGQSPLSSESTSCYRNLGQDDSPVSKSGNVVLNMGLGT 1509
Query: 124 SSMESLSYESGAGNSSP---------GSGVHSHQ------------RTKRMRTSFKHHQL 162
S SY +G G S+P +G Q +T R+RT QL
Sbjct: 1510 SGS---SYSNGCGQSTPELTSTSPQVSAGSVGQQPFAQKKDKREKPKTTRVRTVLNEKQL 1566
Query: 163 RTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
T+++ + N PDA +QL + TGLS RV++
Sbjct: 1567 HTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 1599
>gi|440908077|gb|ELR58138.1| Insulin enhancer protein ISL-1, partial [Bos grunniens mutus]
Length = 359
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 94 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 152
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 153 AGD---PLSP---------LHPARP----------------------------------- 165
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 166 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|353228733|emb|CCD74904.1| putative lim homeobox protein [Schistosoma mansoni]
Length = 628
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 38/54 (70%)
Query: 142 SGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SG+H KHHQLRTMK+YFNIN NPD KDLK L +KTGLSKRVLQ
Sbjct: 506 SGIHQVFDKNVCVHLLKHHQLRTMKAYFNINHNPDVKDLKVLTEKTGLSKRVLQ 559
>gi|533419|gb|AAA81946.1| ISL-1 [Homo sapiens]
Length = 346
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 81 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 139
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 140 AGD---PLSP---------LHPARP----------------------------------- 152
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 153 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 205
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 206 LMKEQLVEMTGLSPRVIR 223
>gi|28569978|dbj|BAC57891.1| transcription factor islet-1 isoform beta [Mus musculus]
gi|148686420|gb|EDL18367.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_a [Mus
musculus]
Length = 326
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|126315044|ref|XP_001365199.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Monodelphis
domestica]
gi|395510264|ref|XP_003759399.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1
[Sarcophilus harrisii]
Length = 349
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|123981310|gb|ABM82484.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
Length = 349
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|94400881|ref|NP_059035.3| insulin gene enhancer protein ISL-1 [Rattus norvegicus]
gi|115387114|ref|NP_002193.2| insulin gene enhancer protein ISL-1 [Homo sapiens]
gi|149642655|ref|NP_001092600.1| insulin gene enhancer protein ISL-1 [Bos taurus]
gi|162287065|ref|NP_067434.3| insulin gene enhancer protein ISL-1 [Mus musculus]
gi|291395329|ref|XP_002714072.1| PREDICTED: islet-1 [Oryctolagus cuniculus]
gi|311273676|ref|XP_003133982.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Sus scrofa]
gi|332254884|ref|XP_003276562.1| PREDICTED: insulin gene enhancer protein ISL-1 [Nomascus
leucogenys]
gi|332821395|ref|XP_001150633.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2 [Pan
troglodytes]
gi|344272509|ref|XP_003408074.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Loxodonta
africana]
gi|345799577|ref|XP_853721.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1 [Canis
lupus familiaris]
gi|348568904|ref|XP_003470238.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cavia
porcellus]
gi|354472426|ref|XP_003498440.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cricetulus
griseus]
gi|395818859|ref|XP_003782831.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Otolemur
garnettii]
gi|397514229|ref|XP_003827396.1| PREDICTED: insulin gene enhancer protein ISL-1 [Pan paniscus]
gi|402871509|ref|XP_003899703.1| PREDICTED: insulin gene enhancer protein ISL-1 [Papio anubis]
gi|403267625|ref|XP_003925922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Saimiri boliviensis
boliviensis]
gi|410949527|ref|XP_003981473.1| PREDICTED: insulin gene enhancer protein ISL-1 [Felis catus]
gi|47606422|sp|P61374.1|ISL1_RAT RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606423|sp|P61371.1|ISL1_HUMAN RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606424|sp|P61372.1|ISL1_MOUSE RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606425|sp|P61373.1|ISL1_MESAU RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|2137056|pir||I67418 transcription factor isl-1 - hamster
gi|4261764|gb|AAD14064.1|S70721_1 homeobox [Homo sapiens]
gi|545787|gb|AAB30128.1| homeobox [Rattus sp.]
gi|4469284|emb|CAB38446.1| Lim-homeodomain protein Islet1 [Mus musculus]
gi|22658390|gb|AAH31213.1| ISL LIM homeobox 1 [Homo sapiens]
gi|30065750|gb|AAP20776.1| Isl-1 [Cricetulus sp.]
gi|119575256|gb|EAW54861.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [Homo
sapiens]
gi|123996141|gb|ABM85672.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
gi|124298178|gb|AAI32264.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|124375804|gb|AAI32610.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|148686421|gb|EDL18368.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_b [Mus
musculus]
gi|148877422|gb|AAI46164.1| ISL1 protein [Bos taurus]
gi|149059388|gb|EDM10395.1| ISL1 transcription factor, LIM/homeodomain 1 [Rattus norvegicus]
gi|157928248|gb|ABW03420.1| ISL LIM homeobox 1 [synthetic construct]
gi|261861196|dbj|BAI47120.1| ISL LIM homeobox 1 [synthetic construct]
gi|296475787|tpg|DAA17902.1| TPA: islet-1 [Bos taurus]
gi|351712707|gb|EHB15626.1| Insulin gene enhancer protein ISL-1 [Heterocephalus glaber]
gi|355691298|gb|EHH26483.1| Insulin gene enhancer protein ISL-1 [Macaca mulatta]
gi|226841|prf||1608207A insulin gene enhancer binding protein Isl-1
Length = 349
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|158254920|dbj|BAF83431.1| unnamed protein product [Homo sapiens]
Length = 349
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|395510266|ref|XP_003759400.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2
[Sarcophilus harrisii]
Length = 354
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|301768533|ref|XP_002919684.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Ailuropoda
melanoleuca]
Length = 349
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 TGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|281342386|gb|EFB17970.1| hypothetical protein PANDA_008333 [Ailuropoda melanoleuca]
Length = 340
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 75 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 133
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 134 TGD---PLSP---------LHPARP----------------------------------- 146
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 147 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 199
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 200 LMKEQLVEMTGLSPRVIR 217
>gi|224090443|ref|XP_002197098.1| PREDICTED: insulin gene enhancer protein ISL-1 [Taeniopygia
guttata]
Length = 349
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ G
Sbjct: 84 IGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGG 143
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
P+SP + RP
Sbjct: 144 G----DPLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|444725137|gb|ELW65716.1| Insulin enhancer protein ISL-1 [Tupaia chinensis]
Length = 308
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 40 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 98
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 99 AGD---PLSP---------LHPARP----------------------------------- 111
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 112 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 164
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 165 LMKEQLVEMTGLSPRVIR 182
>gi|431908581|gb|ELK12174.1| Insulin protein enhancer protein ISL-1 [Pteropus alecto]
Length = 383
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 118 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 176
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 177 AGD---PLSP---------LHPARP----------------------------------- 189
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 190 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 242
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 243 LMKEQLVEMTGLSPRVIR 260
>gi|45382271|ref|NP_990745.1| insulin gene enhancer protein ISL-1 [Gallus gallus]
gi|1708560|sp|P50211.1|ISL1_CHICK RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|531179|gb|AAA62171.1| amino acid feature: LIM1, bp 331 .. 483; amino acid feature: LIM2,
bp 517 .. 669; amino acid feature: homeodomain, bp 820
.. 999 [Gallus gallus]
Length = 349
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 143 AGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|157107092|ref|XP_001649619.1| hypothetical protein AaeL_AAEL014791 [Aedes aegypti]
gi|108868743|gb|EAT32968.1| AAEL014791-PA [Aedes aegypti]
Length = 157
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 57/121 (47%), Gaps = 36/121 (29%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI---------- 52
ISSSELVMRAR LVFH+ CF+C C LL KGD F +RD + CR H +I
Sbjct: 27 ISSSELVMRARHLVFHIRCFSCAICNTLLNKGDHFTIRDSAVLCRSHIDIPPLDPGAPIP 86
Query: 53 ------------------LRHRDYCGSAEIEQP--MSPR----PAPWQPTTVQKGRPRKR 88
L D GS+++ SP P QP QKGRPRKR
Sbjct: 87 LAMQCQYPSQYGTSPSAPLSPSDSTGSSKMPPAGYFSPHHTVTALPQQPR--QKGRPRKR 144
Query: 89 K 89
K
Sbjct: 145 K 145
>gi|61200414|gb|AAX39779.1| ISL1 transcription factor, partial [Ovis aries]
Length = 243
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 42 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 100
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 101 AGD---PLSP---------LHPARP----------------------------------- 113
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 114 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 166
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 167 LMKEQLVEMTGLSPRVIR 184
>gi|197282000|gb|ACH57179.1| Lim2/9 [Trichoplax adhaerens]
Length = 60
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/46 (73%), Positives = 41/46 (89%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+KR+RTSFK QLRTMK+YF +N NPD+KDLKQL+ KTGL+KRVLQ
Sbjct: 1 SKRIRTSFKQPQLRTMKTYFALNHNPDSKDLKQLSIKTGLNKRVLQ 46
>gi|57613|emb|CAA37349.1| insulin gene enhancer binding protein [Rattus rattus]
Length = 313
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 81 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 139
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 140 AGD---PLSP---------LHPARP----------------------------------- 152
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 153 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 205
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 206 LMKEQLVEMTGLSPRVIR 223
>gi|328925134|dbj|BAK19082.1| apterous A splicing isoform type E [Bombyx mori]
Length = 237
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 33/44 (75%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
MRARDLVFH+HCF+C C L KGD +G+RD +YCR HYE +
Sbjct: 1 MRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETM 44
>gi|395822580|ref|XP_003784594.1| PREDICTED: insulin gene enhancer protein ISL-2 [Otolemur garnettii]
Length = 359
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 81/198 (40%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
SP P + A + +P
Sbjct: 154 ---------------------------------SPRSPGQLPGARGLHLP---------- 170
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
D S+ + P H H ++T R+RT QL T+++ + N PDA
Sbjct: 171 DPGSARQ------------PSLRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 218
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 219 LMKEQLVEMTGLSPRVIR 236
>gi|50253600|gb|AAT72002.1| isl1, partial [Xenopus (Silurana) tropicalis]
Length = 268
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVER----A 139
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP + RP
Sbjct: 140 SLGASDPLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|327262855|ref|XP_003216239.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Anolis
carolinensis]
Length = 349
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ P+SP + RP
Sbjct: 143 PGD---PLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|395735796|ref|XP_003776642.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-1
[Pongo abelii]
Length = 382
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 50/199 (25%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 87 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 145
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+S P P + +R L P +E I+A
Sbjct: 146 AGD---PLS----PLHPCRXLQPSASRRSL-----FPAAEPISAR--------------- 178
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKS-YFNINQNPD 176
P H H ++T R+RT QL T+++ Y + + PD
Sbjct: 179 ------------------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYASKTRGPD 220
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
A +QL + TGLS RV++
Sbjct: 221 ALMKEQLVEMTGLSPRVIR 239
>gi|195376251|ref|XP_002046910.1| GJ12228 [Drosophila virilis]
gi|194154068|gb|EDW69252.1| GJ12228 [Drosophila virilis]
Length = 564
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHRDY 58
I++ ELVMR+++ +FHL CF C+ CG LL KG+ + ++ ++CR Y E+L+ DY
Sbjct: 281 IAADELVMRSQENIFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDY 340
Query: 59 CGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
G M R P +P T+ + R+ K S + P + N+ + +L ++
Sbjct: 341 YGDDLFPPKMDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIV 400
Query: 118 H 118
Sbjct: 401 Q 401
>gi|170048228|ref|XP_001870663.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870357|gb|EDS33740.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 195
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 35/50 (70%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI 52
ISSSELVMRAR LVFH+ CF C C LL KGD F +RD + CR H +I
Sbjct: 40 ISSSELVMRARHLVFHIRCFCCAICNTLLNKGDHFTIRDSAVLCRSHIDI 89
>gi|328708271|ref|XP_001949712.2| PREDICTED: LIM/homeobox protein Awh-like [Acyrthosiphon pisum]
Length = 346
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 22/196 (11%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
+ +++ D ++H+ C C C ++L ++D+ IYCR Y R + G+
Sbjct: 69 TDRFLLKVSDKIWHVSCLRCCVCNLVLEDEPSCFIKDDSIYCRQDYA----RSF-GTVCS 123
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM-LHSGDLS 123
+ + W V+K R L+ +N T E LH G +
Sbjct: 124 KCSKGISASHW----VRKARDHVYHLACFRCDACDRQLN--------TGEEFALHEGRVL 171
Query: 124 SSMESLSYESGAGNSSPGSG----VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
L G SS G HS + KR+RT+F QL+ +++ F ++ NPD +D
Sbjct: 172 CKPHYLDIVDGGTTSSSEGGDSESYHSKNKAKRVRTTFTEEQLQVLQANFQLDSNPDGQD 231
Query: 180 LKQLAQKTGLSKRVLQ 195
L+++AQ TGLSKRV Q
Sbjct: 232 LERIAQITGLSKRVTQ 247
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S V +ARD V+HL CF C +C L G+ F + + + C+PHY
Sbjct: 128 GISASHWVRKARDHVYHLACFRCDACDRQLNTGEEFALHEGRVLCKPHY 176
>gi|326910973|ref|XP_003201838.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Meleagris gallopavo]
Length = 299
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 76/197 (38%), Gaps = 64/197 (32%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ SEL+MR + V+H+HCF C C L +GD F +++ + CR YE
Sbjct: 25 AIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSDYE---------- 74
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
K LS SPTP
Sbjct: 75 -----------------------KEKEMLSAISPTP------------------------ 87
Query: 122 LSSSMESLSYESGAGNSSPGSGVH---SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
ES+ E G+ S G G H+R+KR RT Q R K+ F ++ P K
Sbjct: 88 ----TESVKSEDEDGSHSHGKGSEDSKDHKRSKRPRTILTTQQRRAFKASFEVSSKPCRK 143
Query: 179 DLKQLAQKTGLSKRVLQ 195
+ LA +TGL+ RV+Q
Sbjct: 144 VRETLAAETGLTVRVVQ 160
>gi|443701940|gb|ELU00130.1| hypothetical protein CAPTEDRAFT_97456 [Capitella teleta]
Length = 269
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 86/194 (44%), Gaps = 37/194 (19%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCGS 61
+S S+LV RA D V+HL CFTC+ C L G+ + + D + C+ Y + + CG
Sbjct: 71 LSPSDLVRRALDRVYHLQCFTCLVCRRQLDTGEEYFVLDTTRFMCKKDYMEIEGK--CGK 128
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
P S PA P T G P+ SED +A
Sbjct: 129 PSGRAPGSC-PA-CGPGTRPPGAPQD-----------SEDDDATTQ-------------- 161
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
SS E + ES G+ +PGS + R RT K QL+ + + F N P K+ +
Sbjct: 162 -VSSAEQDAPESNGGDGTPGS------KKSRPRTVIKDDQLKVLHAAFTANHLPTKKERE 214
Query: 182 QLAQKTGLSKRVLQ 195
L ++TGLS RV+Q
Sbjct: 215 DLVERTGLSMRVIQ 228
>gi|334321462|ref|XP_003340108.1| PREDICTED: LIM/homeobox protein Lhx8-like [Monodelphis domestica]
Length = 331
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 17/190 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L +H+ C +C C L + ++D+ I+C+ Y R + G + P
Sbjct: 108 LLKVNELCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY--FRSQRAEG---LLHPG 162
Query: 69 SPRPAPWQPTT-VQKGRPRKRKLSVDSPTPPSEDINANVMRIP-STTLEMLHSGDLSSSM 126
PRP PW V + +P LS+ + P + R + +L +S
Sbjct: 163 GPRPPPWLGLQLVWQRQPGVGFLSIATAQAPQLLVAVQGTRKGRAGAGALLWRNGISVEG 222
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
LS + V+ + KR RTSF QL+ M++ F + NPDA+ L++LA++
Sbjct: 223 ALLSDQD----------VNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAER 272
Query: 187 TGLSKRVLQN 196
TGLS+RV+Q
Sbjct: 273 TGLSRRVIQT 282
>gi|194747131|ref|XP_001956006.1| GF24989 [Drosophila ananassae]
gi|190623288|gb|EDV38812.1| GF24989 [Drosophila ananassae]
Length = 554
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHRDY 58
I+S ELVMR + VFHL CF C+ CG+LL KG+ + ++ ++CR Y E+L+ D+
Sbjct: 274 IASDELVMRCHENVFHLKCFACVVCGVLLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDF 333
Query: 59 CGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
G + R P +P T+ + R+ K S + P + N+ + +L ++
Sbjct: 334 YGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKETGLSLRIV 393
Query: 118 H 118
Sbjct: 394 Q 394
>gi|183985542|gb|AAI66037.1| isl1 protein [Xenopus (Silurana) tropicalis]
Length = 335
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 58/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVER----A 139
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP + RP
Sbjct: 140 SLGASDPLSP---------LHPARP----------------------------------- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 156 -LQMAAEPIS------ARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 208
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 209 LMKEQLVEMTGLSPRVIR 226
>gi|206598477|gb|ACI16104.1| LIM homeobox 2 [Echinops telfairi]
Length = 90
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 37/48 (77%)
Query: 11 RARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
RARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 1 RARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 48
>gi|449268911|gb|EMC79740.1| LIM homeobox transcription factor 1-alpha [Columba livia]
Length = 343
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 75/194 (38%), Gaps = 58/194 (29%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ SEL+MR + V+H+HCF C C L +GD F +++ + CR YE
Sbjct: 70 AIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSDYE---------- 119
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
K LS SP P
Sbjct: 120 -----------------------KEKEMLSAISPAP------------------------ 132
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ S++S + G + G H+R+KR RT Q R K+ F ++ P K +
Sbjct: 133 -TESVKSEDEDGGHSHGKGGEETKDHKRSKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 191
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGL+ RV+Q
Sbjct: 192 TLAAETGLTVRVVQ 205
>gi|443690540|gb|ELT92649.1| hypothetical protein CAPTEDRAFT_219057 [Capitella teleta]
Length = 432
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 46/207 (22%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
S ++ VMRA++ ++H+ CF CI+C L GD F +RD+ ++C+ ++++ GS
Sbjct: 86 FSKNDFVMRAKNKIYHIDCFRCIACSRQLIPGDEFALRDDGLFCKADHDVVESAST-GSI 144
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P+P +D N++ + + L D+
Sbjct: 145 -------------------------------TPSPAQDDAKMNILNNNNNNNKDLKLHDV 173
Query: 123 S--SSMESLSYESGAGNSSPGSGV------------HSHQRTKRMRTSFKHHQLRTMKSY 168
S SS LS G G G G + +T R+RT QL T+++
Sbjct: 174 SDDSSSGKLSGGGGGGGGGGGVGGGGGGGGRARGSRNKETKTTRIRTVLNEKQLHTLRTC 233
Query: 169 FNINQNPDAKDLKQLAQKTGLSKRVLQ 195
++ N PDA +QL + TGLS RV++
Sbjct: 234 YSANPRPDALMKEQLTEMTGLSPRVIR 260
>gi|242009361|ref|XP_002425456.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
gi|212509292|gb|EEB12718.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
Length = 433
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 8/194 (4%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
S ++ VMRA+ ++H+ CF C +C L GD F +R++ ++C+ +E+L D +
Sbjct: 80 FSKNDFVMRAKTKIYHVDCFRCTACERQLVPGDEFALREDGLFCKEDHEVL---DKSCTG 136
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
E + + +G + + S + A+ +R+ + +S
Sbjct: 137 EHNNNNTNVNNNNSNSVHNEGSNSGYEW-LTSRFDAFNSMCADDVRLCVSHFFAYYS--- 192
Query: 123 SSSMESLSYESGAGNSSPGSG-VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S S + +SG+ SS G+ V S + R+RT QL T+++ + N PDA +
Sbjct: 193 SESGSNKGRDSGSCRSSGGTNKVSSDGKPTRVRTVLNEKQLHTLRTCYAANPRPDALMKE 252
Query: 182 QLAQKTGLSKRVLQ 195
QL + TGLS RV++
Sbjct: 253 QLVEMTGLSPRVIR 266
>gi|88954018|gb|ABD59002.1| LIM-homeodomain protein AmphiLim1/5 [Branchiostoma floridae]
Length = 464
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHY---------- 50
GI ++LV RAR+ VFHL CFTC +C + G +LF + D+ C+ Y
Sbjct: 70 GILPNDLVRRARNKVFHLKCFTCAACAKQMATGEELFVVDDDKFICKDCYHNNKVTADRG 129
Query: 51 -EILRHRDYCGSAEIEQPMSPRPAPWQPTTVQKGRPR----------KRKLSVDSPTPPS 99
++ G E + ++ PAP T R + +S+++P P S
Sbjct: 130 SDVEAELGLTGPEETDDSLTGAPAPPPAATPAVAPAREPMREAAADSRENVSLNTPNPAS 189
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRT-----KRMR 154
++ R S D SS S E+G+ S G +++ T + R
Sbjct: 190 PTSPSSAPRDEKERETARDSRDTVSSGNSSDNEAGSATSKDGVSGGNNENTLGAKRRGPR 249
Query: 155 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
T+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 250 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 290
>gi|156552953|ref|XP_001603153.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Nasonia
vitripennis]
Length = 458
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 27/193 (13%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
+ ++ VMRA+ ++HL CF C +C L GD F +R + ++CR ++ L CG
Sbjct: 116 FNKNDFVMRAKTKIYHLECFRCSACMRQLVPGDEFALRSDGLFCRHDHDALEGEKICGGG 175
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
V G P + + T + ++ N + SG
Sbjct: 176 -----------------VPAGIPGNENNNNANLTNNNHHLHPNDGSLSD-------SGSE 211
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
S S +++ GA G S + R+RT QL T+++ + N PDA +Q
Sbjct: 212 SGSHKTVGGARGAAGHKGGG---SDGKPTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQ 268
Query: 183 LAQKTGLSKRVLQ 195
L + TGLS RV++
Sbjct: 269 LVEMTGLSPRVIR 281
>gi|158296017|ref|XP_001237835.2| AGAP006537-PA [Anopheles gambiae str. PEST]
gi|157016310|gb|EAU76621.2| AGAP006537-PA [Anopheles gambiae str. PEST]
Length = 271
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 75/193 (38%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
IS+++ V RAR+ VFHL CF C SCG L+ G+ + I R C +
Sbjct: 76 ISATDWVRRAREYVFHLACFACDSCGRQLSTGE-------------QFAICEDRVLCKTH 122
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+E +D T SED
Sbjct: 123 YMEL-------------------------IDDGTTSSED--------------------- 136
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
G + G+G +TKR+RT+F Q++ +++ F ++ NPD +DL++
Sbjct: 137 -------------GLDADGNG---KNKTKRIRTTFTEEQIQILQANFQVDSNPDGQDLER 180
Query: 183 LAQKTGLSKRVLQ 195
+A TGLSKRV Q
Sbjct: 181 IALATGLSKRVTQ 193
>gi|195012862|ref|XP_001983762.1| GH16074 [Drosophila grimshawi]
gi|193897244|gb|EDV96110.1| GH16074 [Drosophila grimshawi]
Length = 583
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHRDY 58
I+ ELVMR+++ +FHL CF C+ CG LL KG+ + ++ ++CR Y E+L+ D+
Sbjct: 303 IAGDELVMRSQENIFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDF 362
Query: 59 CGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
G M R P +P T+ + R+ K S + P + N+ + +L ++
Sbjct: 363 YGDDLFPPKMDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIV 422
Query: 118 H 118
Sbjct: 423 Q 423
>gi|195126142|ref|XP_002007533.1| GI12337 [Drosophila mojavensis]
gi|193919142|gb|EDW18009.1| GI12337 [Drosophila mojavensis]
Length = 586
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHRDY 58
I++ ELVMR+++ +FHL CF C+ CG +L KG+ + ++ ++CR Y E+L+ DY
Sbjct: 297 IAADELVMRSQENIFHLKCFACVVCGAVLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDY 356
Query: 59 CGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
G M R P +P T+ + R+ K S + P + N+ + +L ++
Sbjct: 357 YGDDLFPPKMDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIV 416
Query: 118 H 118
Sbjct: 417 Q 417
>gi|1708565|sp|P53409.1|ISL3_ONCTS RecName: Full=Insulin gene enhancer protein ISL-3; Short=Islet-3
Length = 363
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 84/196 (42%), Gaps = 54/196 (27%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +RDE E+L D+
Sbjct: 94 LGFSSSDLVMRARDNVYHIECFRCSVCSRQLLPGDEFSLRDE--------ELLCRADHSL 145
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
E + S SP P I++N LH
Sbjct: 146 LME-------------------------RTSAGSPISPGH-IHSN---------RSLH-- 168
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
L+ E + + VH ++T R+RT QL T+++ +N N PDA
Sbjct: 169 --------LAAEPVTVRAPHRNHVHKQSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALM 220
Query: 180 LKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 221 REQLVEMTGLSPRVIR 236
>gi|405973461|gb|EKC38176.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 278
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 26/192 (13%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
++ +H+ C C C I L + +R++ IYCR Y R++ G+ +
Sbjct: 56 FLLHVNGQAWHVGCLRCCICQIGLERQTSCFIREDNIYCRNDYS----REF-GTKCAKCY 110
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL----S 123
+ + W V++ R L+ + + R ST E GD S
Sbjct: 111 RTIQSTDW----VRRARENVYHLACFACD--------SCKRQLSTGEEFALHGDRVLCKS 158
Query: 124 SSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQL 183
ME L G SS S + KR+RT+F QL+ +++ F ++ NPD +DL+++
Sbjct: 159 HYMELLE-----GGSSKDSECSQKSKAKRVRTTFTEDQLQVLQANFQLDSNPDGQDLERI 213
Query: 184 AQKTGLSKRVLQ 195
AQ TGLSKRV Q
Sbjct: 214 AQITGLSKRVTQ 225
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I S++ V RAR+ V+HL CF C SC L+ G+ F + + + C+ HY
Sbjct: 113 IQSTDWVRRARENVYHLACFACDSCKRQLSTGEEFALHGDRVLCKSHY 160
>gi|195160501|ref|XP_002021114.1| GL25001 [Drosophila persimilis]
gi|194118227|gb|EDW40270.1| GL25001 [Drosophila persimilis]
Length = 458
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHRDY 58
+++ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+ DY
Sbjct: 278 VAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDY 337
Query: 59 CGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
G + R P +P T+ + R+ K S + P + N+ + +L ++
Sbjct: 338 YGDDLFPPKLDGRRGPKRPRTILNTQQRRSFKASFEVSPKPCRKVRENLAKETGLSLRIV 397
>gi|198464778|ref|XP_001353365.2| GA18112 [Drosophila pseudoobscura pseudoobscura]
gi|198149875|gb|EAL30872.2| GA18112 [Drosophila pseudoobscura pseudoobscura]
Length = 553
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHRDY 58
+++ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+ DY
Sbjct: 276 VAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDY 335
Query: 59 CGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
G + R P +P T+ + R+ K S + P + N+ + +L ++
Sbjct: 336 YGDDLFPPKLDGRRGPKRPRTILNTQQRRSFKASFEVSPKPCRKVRENLAKETGLSLRIV 395
Query: 118 H 118
Sbjct: 396 Q 396
>gi|158296015|ref|XP_316574.4| AGAP006536-PA [Anopheles gambiae str. PEST]
gi|157016309|gb|EAA11386.5| AGAP006536-PA [Anopheles gambiae str. PEST]
Length = 291
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C C LL + RD +YCR Y + G+ + + + W
Sbjct: 55 AWHGSCLRCSVCLTLLERQPSCYFRDRQVYCRTDYIKMF-----GAKCSKCCRTIAASDW 109
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSMESLSYES 133
V+K R L+ S ++ I + +H D ++E S S
Sbjct: 110 ----VRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCKIHYMD---TVEDGSNSS 162
Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G SS G ++ ++KR+RT+F QL+ +++ F I+ NPD +DL+++AQ TGLSKRV
Sbjct: 163 DDGCSSDG---YNKNKSKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAQLTGLSKRV 219
Query: 194 LQ 195
Q
Sbjct: 220 TQ 221
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I++S+ V +ARDLVFHL CF+C +CG L+ G+ F + D+ + C+ HY
Sbjct: 104 IAASDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCKIHY 151
>gi|357605400|gb|EHJ64588.1| hypothetical protein KGM_21596 [Danaus plexippus]
Length = 406
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPR---P 72
+H C C C + L + +RD +YC+ +DY S + R
Sbjct: 157 AWHTGCLRCCVCAVQLDRHPSCFLRDRQVYCK--------QDYAKSFGAKCSKCCRGISS 208
Query: 73 APWQPTTVQKGRPR------------KRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ W V+K R + R+LS ED V+ P LE L G
Sbjct: 209 SDW----VRKAREQVYHLACFACDACGRQLSTGEQFALHED---RVLCKPHY-LETLDGG 260
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+SS G N G H + KR+RT+F QL+ +++ F ++ NPD +DL
Sbjct: 261 SISSD--------GKCNGCDSEGYHK-SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDL 311
Query: 181 KQLAQKTGLSKRVLQ 195
+++AQ TGLSKRV Q
Sbjct: 312 ERIAQVTGLSKRVTQ 326
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GISSS+ V +AR+ V+HL CF C +CG L+ G+ F + ++ + C+PHY
Sbjct: 205 GISSSDWVRKAREQVYHLACFACDACGRQLSTGEQFALHEDRVLCKPHY 253
>gi|391339813|ref|XP_003744241.1| PREDICTED: sodium-coupled monocarboxylate transporter 1-like
[Metaseiulus occidentalis]
Length = 707
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 27/186 (14%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPR---PA 73
+H+ C C C LL K RD +YC+ +DY + R +
Sbjct: 475 WHVDCLRCCVCDCLLEKDSTCFFRDNNVYCK--------QDYARQFGVRCSKCTRGIQSS 526
Query: 74 PWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM-LHSGDLSSSMESLSYE 132
W V++ R + L+ + R ST E LH G + +
Sbjct: 527 DW----VRRARDQVYHLACFA--------CEECKRQLSTGEEFALHDGRVLCKIHFCELI 574
Query: 133 SGAGNSSPGSGVHSHQ---RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGL 189
S+ + H +TKR+RT+F QL+ +++ FN++ NPD +DL+++AQ TGL
Sbjct: 575 DPGSQSTDDNADQDHNPRAKTKRVRTTFTEEQLQVLQANFNLDSNPDGQDLERIAQITGL 634
Query: 190 SKRVLQ 195
SKRV Q
Sbjct: 635 SKRVTQ 640
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY-EILRHRDYCG 60
GI SS+ V RARD V+HL CF C C L+ G+ F + D + C+ H+ E++
Sbjct: 522 GIQSSDWVRRARDQVYHLACFACEECKRQLSTGEEFALHDGRVLCKIHFCELIDPGSQST 581
Query: 61 SAEIEQPMSPR 71
+Q +PR
Sbjct: 582 DDNADQDHNPR 592
>gi|195493804|ref|XP_002094570.1| GE20130 [Drosophila yakuba]
gi|194180671|gb|EDW94282.1| GE20130 [Drosophila yakuba]
Length = 540
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHR 56
+ I++ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+
Sbjct: 260 LKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGY 319
Query: 57 DYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLE 115
D+ G + R P +P T+ + R+ K S + P + N+ + +L
Sbjct: 320 DFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLR 379
Query: 116 MLH 118
++
Sbjct: 380 IVQ 382
>gi|195589788|ref|XP_002084631.1| GD12730 [Drosophila simulans]
gi|194196640|gb|EDX10216.1| GD12730 [Drosophila simulans]
Length = 527
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHR 56
+ I++ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+
Sbjct: 247 LKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGY 306
Query: 57 DYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLE 115
D+ G + R P +P T+ + R+ K S + P + N+ + +L
Sbjct: 307 DFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLR 366
Query: 116 MLH 118
++
Sbjct: 367 IVQ 369
>gi|195327095|ref|XP_002030257.1| GM24666 [Drosophila sechellia]
gi|194119200|gb|EDW41243.1| GM24666 [Drosophila sechellia]
Length = 527
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHR 56
+ I++ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+
Sbjct: 247 LKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGY 306
Query: 57 DYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLE 115
D+ G + R P +P T+ + R+ K S + P + N+ + +L
Sbjct: 307 DFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLR 366
Query: 116 MLH 118
++
Sbjct: 367 IVQ 369
>gi|121531642|gb|ABM55504.1| LIM/homeobox protein 2 [Astyanax mexicanus]
Length = 130
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 162 LRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
LRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 1 LRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 34
>gi|13516919|dbj|BAB40339.1| islet [Halocynthia roretzi]
Length = 432
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 90/195 (46%), Gaps = 16/195 (8%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G + ++ VMRAR+ ++H+ CF C++C L GD F +R++ ++C+ ++++ G
Sbjct: 92 LGFTKNDFVMRARNKIYHIECFKCVACSKQLIPGDEFALREDGLFCKADHDVVERNCLVG 151
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ G + + + S ++ + VM + + G
Sbjct: 152 DV---------------LSLSNGNDHRMTNGMSPMSMQSGNVLSPVMGGVGPPVGHM-GG 195
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
++ + S G+S G H +T R+RT QL T+++ + N PDA
Sbjct: 196 MVNGGTPGGTSSSSGGSSGGGRRSHKDPKTTRVRTVLNEKQLHTLRTCYGANPRPDALMK 255
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + T LS RV++
Sbjct: 256 EQLVEMTALSPRVIR 270
>gi|145587040|gb|ABP87885.1| IP01439p [Drosophila melanogaster]
Length = 467
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHR 56
+ I++ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+
Sbjct: 187 LKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGY 246
Query: 57 DYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLE 115
D+ G + R P +P T+ + R+ K S + P + N+ + +L
Sbjct: 247 DFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLR 306
Query: 116 MLH 118
++
Sbjct: 307 IVQ 309
>gi|281366134|ref|NP_648567.2| CG4328 [Drosophila melanogaster]
gi|211938623|gb|ACJ13208.1| FI06571p [Drosophila melanogaster]
gi|272455176|gb|AAF49932.2| CG4328 [Drosophila melanogaster]
Length = 544
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHR 56
+ I++ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+
Sbjct: 264 LKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGY 323
Query: 57 DYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLE 115
D+ G + R P +P T+ + R+ K S + P + N+ + +L
Sbjct: 324 DFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLR 383
Query: 116 MLH 118
++
Sbjct: 384 IVQ 386
>gi|194869786|ref|XP_001972521.1| GG13839 [Drosophila erecta]
gi|190654304|gb|EDV51547.1| GG13839 [Drosophila erecta]
Length = 531
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHR 56
+ I++ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+
Sbjct: 251 LKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGY 310
Query: 57 DYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLE 115
D+ G + R P +P T+ + R+ K S + P + N+ + +L
Sbjct: 311 DFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLR 370
Query: 116 MLH 118
++
Sbjct: 371 IVQ 373
>gi|321455236|gb|EFX66374.1| hypothetical protein DAPPUDRAFT_11288 [Daphnia pulex]
Length = 349
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 96/217 (44%), Gaps = 38/217 (17%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
G+S ++LV +ARD V+HL CFTC C L+ G +L+ + D C+ + R
Sbjct: 66 GLSPTDLVRKARDKVYHLRCFTCALCRRQLSTGEELYLLDDARFLCKEDF----IRGKAA 121
Query: 61 SAEIEQPMSP-----------RPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMR- 108
A I SP P+P +P T P + L + +P P S+ I R
Sbjct: 122 PANITSLSSPICGRADEDGLTMPSPNRPLT-----PMTQGLII-APPPSSDGIVIKTQRP 175
Query: 109 -IPSTTLEMLHSGDLSSSMESLSYESGAGNS---------SPGSGVHSHQRTKRMRTSFK 158
PS T++ D S++ G G S SP G +R + RT+ K
Sbjct: 176 STPSNTIDDKDGNDSEGSVDG----DGEGESRSDNPSESKSPDEGGAGSKR-RGPRTTIK 230
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
QL +K+ F+ P +QLA++TGL RV+Q
Sbjct: 231 AKQLEILKNAFSQTPKPTRHIREQLAKETGLPMRVIQ 267
>gi|224058880|ref|XP_002190501.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Taeniopygia
guttata]
Length = 379
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 76/193 (39%), Gaps = 54/193 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ SELVMRA+ V+HLHCF C C L KGD F +++ + C+ YE
Sbjct: 99 IAPSELVMRAQKSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCKGDYE----------- 147
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
++R+L + + S L D
Sbjct: 148 -----------------------KEREL----------------LSLVSPALSDSGKSDD 168
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
S+ L SG G H+R KR RT Q R K+ F ++ P K +
Sbjct: 169 EDSICKLGQASGKG----AEDGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRET 224
Query: 183 LAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 225 LAAETGLSVRVVQ 237
>gi|332230041|ref|XP_003264195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Nomascus leucogenys]
Length = 401
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 78/195 (40%), Gaps = 48/195 (24%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
++ S P ++ G R +
Sbjct: 180 SPDESDSGEAWPELGAGLRDGERRPAR--------------------------------- 206
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
GAG+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 207 -----------GAGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 255
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 256 ETLAAETGLSVRVVQ 270
>gi|348565813|ref|XP_003468697.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Cavia
porcellus]
Length = 382
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 77/195 (39%), Gaps = 55/195 (28%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP SG
Sbjct: 155 ----------------------------LSLVSPAASD-------------------SGK 167
Query: 122 LSSSMESLSYES-GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ESL S GAG +P G H+R KR RT Q R K+ F ++ P K
Sbjct: 168 -SDDEESLCKSSQGAGKGTPEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 225
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 226 ETLAAETGLSVRVVQ 240
>gi|332230043|ref|XP_003264196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Nomascus leucogenys]
Length = 416
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 78/195 (40%), Gaps = 48/195 (24%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
++ S P ++ G R +
Sbjct: 180 SPDESDSGEAWPELGAGLRDGERRPAR--------------------------------- 206
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
GAG+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 207 -----------GAGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 255
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 256 ETLAAETGLSVRVVQ 270
>gi|332230039|ref|XP_003264194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Nomascus leucogenys]
Length = 408
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 78/195 (40%), Gaps = 48/195 (24%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
++ S P ++ G R +
Sbjct: 180 SPDESDSGEAWPELGAGLRDGERRPAR--------------------------------- 206
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
GAG+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 207 -----------GAGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 255
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 256 ETLAAETGLSVRVVQ 270
>gi|242007292|ref|XP_002424475.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
corporis]
gi|212507893|gb|EEB11737.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
corporis]
Length = 396
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
IS+ ELVM+A D VFHL CF C+ CG+ L +GD F ++ ++CRP YE
Sbjct: 73 ISADELVMKALDSVFHLRCFICVVCGVRLQRGDQFVIKQGQLFCRPDYE 121
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAE 63
+MR D+ +H C C CGI L+ RD +YCR Y+ L + G +E
Sbjct: 19 LMRVADVFYHERCLLCSVCGIRLSHTCF--TRDSKLYCRLDYDRLYAKKCLGCSE 71
>gi|157119485|ref|XP_001653405.1| insulinprotein enhancer protein isl [Aedes aegypti]
gi|108883188|gb|EAT47413.1| AAEL001500-PA, partial [Aedes aegypti]
Length = 398
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 24/194 (12%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRD-EMIYCRPHYEILRHRDYCGS 61
S ++ VMRA+ ++H+ CF C +C L GD F +RD +YC+ ++ L +
Sbjct: 76 FSKNDFVMRAKTKIYHIECFRCSACARQLIPGDEFALRDGGALYCKEDHDHLEKSN---- 131
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
Q + +Q P S + S + N + + + E+ D
Sbjct: 132 --------------QNSLIQSVEPNNNISSNTNQNSTSNNNNNTSLSNNNHSSELGSMSD 177
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S S G G S P G + R+RT QL T+++ +N N PDA +
Sbjct: 178 SGSESGSHKSMRGKGPSGPSDG-----KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKE 232
Query: 182 QLAQKTGLSKRVLQ 195
QL + TGLS RV++
Sbjct: 233 QLVEMTGLSPRVIR 246
>gi|328705917|ref|XP_001945631.2| PREDICTED: LIM/homeobox protein Lhx5-like [Acyrthosiphon pisum]
Length = 555
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 33/217 (15%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHY------EILR 54
GIS ++LV +ARD VFHL+CFTC+ C L+ G +L+ + D C+ Y + +
Sbjct: 182 GISPTDLVRKARDKVFHLNCFTCMICRKQLSTGEELYVLEDNKFICKDDYISGKNGQGID 241
Query: 55 HRDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKRKL-----------SVDSPTPPSEDIN 103
Y GS + + TT K L S+ PT P + N
Sbjct: 242 SLTYSGSEDEDD---------DETTSNSISSTKHHLITGLHGSGGPGSILPPTTPEANNN 292
Query: 104 ---ANVMRIPSTTLEMLHSGDLSSSMES--LSYESGAGNSSPGSGVHSHQRTKRMRTSFK 158
A ++ P + L++ + S++ + +S N SP G +S + + RT+ K
Sbjct: 293 SLSAGDLQAPHSGLDLKEDSEDQGSLDGDPETRDSQTENKSPDDG-NSGSKRRGPRTTIK 351
Query: 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
QL +K+ F+ P +QLA++T L RV+Q
Sbjct: 352 AKQLEILKTAFSQTPKPTRHIREQLAKETSLPMRVIQ 388
>gi|432885359|ref|XP_004074682.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oryzias latipes]
Length = 396
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS ++LV +AR VFHL+CFTC+ C L+ G E +Y + + DY
Sbjct: 70 GISPNDLVRKARSKVFHLNCFTCMVCNKQLSTG-------EELYVIDENKFVCKEDYLSP 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
I+ + + R LS D P P +DI T S
Sbjct: 123 GSIK----------EVSLNSVSSCTDRSLSPDLPDPTQDDIK--------ETDNSTSSDK 164
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
++++E+ SGA P RT+ K QL T+K+ F P +
Sbjct: 165 ETNNIENEEQNSGAKRRGP-------------RTTIKAKQLETLKAAFVATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|3046880|gb|AAC13544.1| LIM-homeodomain protein LMX1B/LMX1.2 [Homo sapiens]
Length = 161
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 5 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 61
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 62 -----VSPD---------------------ESDSVKSED----------------EDGDM 79
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 80 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 132
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 133 ETLAAETGLSVRVVQ 147
>gi|355749907|gb|EHH54245.1| Insulin gene enhancer protein ISL-1 [Macaca fascicularis]
Length = 349
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 54/196 (27%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPS-EDINANVMRIPSTTLEMLHS 119
+ + P+SP + RP + +P P S + +V + P T +
Sbjct: 143 AGD---PLSP---------LHPARPLQM---AGTPLPGSXXXLRPHVHKQPEKTTRV--- 184
Query: 120 GDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
RT QL T+++ + N PDA
Sbjct: 185 ----------------------------------RTVLNEKQLHTLRTCYAANPRPDALM 210
Query: 180 LKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 211 KEQLVEMTGLSPRVIR 226
>gi|260829945|ref|XP_002609922.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
gi|229295284|gb|EEN65932.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
Length = 430
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 68/204 (33%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH----- 55
+G + ++ VMRAR+ ++H+ CF C++C L GD F +R++ ++C+ +E+L
Sbjct: 93 LGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADHEVLERASNNV 152
Query: 56 ----RDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPS 111
R GS ++E M+ RP GR +R+ V
Sbjct: 153 DSNGRASLGSTDLE--MATRPE-------SHGRSDQRRPQV------------------- 184
Query: 112 TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNI 171
H D H+ T+ +RT QL T+++ +
Sbjct: 185 ------HKQD------------------------GHKPTR-VRTVLNEKQLHTLRTCYAA 213
Query: 172 NQNPDAKDLKQLAQKTGLSKRVLQ 195
N PDA +QL + TGLS RV++
Sbjct: 214 NPRPDALMKEQLVEMTGLSPRVIR 237
>gi|443694945|gb|ELT95963.1| hypothetical protein CAPTEDRAFT_167213 [Capitella teleta]
Length = 352
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE---ILRHRDYC 59
+ S+ELVMRA VFHL CF C++CG L +GD F ++D ++CR +E +++H D+C
Sbjct: 81 VPSNELVMRAVGHVFHLQCFVCVACGHQLQRGDQFVVKDGQLFCRADFEREFLMQHPDWC 140
Query: 60 G---------SAEIEQPMSPRPAPWQPTTV-QKGRPRKRKLSVDSPTPPSEDI 102
S+ E + P +P T+ + RK K S + P I
Sbjct: 141 SGYSTKSDEESSIDENDADNQKGPKRPRTILTTSQRRKFKASFEVNPKPCRKI 193
>gi|431916082|gb|ELK16336.1| LIM homeobox transcription factor 1-alpha [Pteropus alecto]
Length = 374
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 76/195 (38%), Gaps = 55/195 (28%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F ++D + CR YE R
Sbjct: 92 AIAPNEFVMRAQKTVYHLGCFCCCVCERQLQKGDEFVLKDGQLLCRGDYEKEREL----- 146
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP SG
Sbjct: 147 ----------------------------LSLVSPAASD-------------------SGK 159
Query: 122 LSSSMESLSYES-GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ESL + GAG + G H+R KR RT Q R K+ F ++ P K
Sbjct: 160 -SDDEESLCKSAHGAGKGAAEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 217
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 218 ETLAAETGLSVRVVQ 232
>gi|344240688|gb|EGV96791.1| Insulin gene enhancer protein ISL-1 [Cricetulus griseus]
Length = 257
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 58/188 (30%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMS 69
MRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G+ + P+S
Sbjct: 1 MRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLGAGD---PLS 56
Query: 70 PRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESL 129
P + RP L + E +
Sbjct: 57 P---------LHPARP------------------------------------LQMAAEPI 71
Query: 130 SYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
S P H H ++T R+RT QL T+++ + N PDA +QL +
Sbjct: 72 SAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEM 125
Query: 187 TGLSKRVL 194
TGLS RV+
Sbjct: 126 TGLSPRVI 133
>gi|345492348|ref|XP_001601137.2| PREDICTED: LIM/homeobox protein Awh-like [Nasonia vitripennis]
Length = 300
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L +R+ IYCR Y I ++ G+ + S W
Sbjct: 110 TWHSKCLKCCACSKPLHDQHSCFLRNTQIYCRQDYVI----NF-GARCAKCSRSIGSGDW 164
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSED---------INANVMRIPSTTLEMLHSGDLSSSM 126
V++ R R L+ + S I+A ++ + L+ + + SSS
Sbjct: 165 ----VRRARDRVYHLACFACDACSRQLSTGEQFALIDAKLL-CKAHYLDAVEGNNTSSSE 219
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ S S GN +TKR+RT+F QL +++ F ++ NPD +DL+++A
Sbjct: 220 DCDSEHSCKGN-----------KTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHV 268
Query: 187 TGLSKRVLQ 195
TGLSKRV Q
Sbjct: 269 TGLSKRVTQ 277
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I S + V RARD V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 159 IGSGDWVRRARDRVYHLACFACDACSRQLSTGEQFALIDAKLLCKAHY 206
>gi|195163209|ref|XP_002022444.1| GL13034 [Drosophila persimilis]
gi|194104436|gb|EDW26479.1| GL13034 [Drosophila persimilis]
Length = 332
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 89 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 147
Query: 61 SAEIEQPM----SPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMR 108
+ + S P + R L V P P + DI+ M
Sbjct: 148 HNSLSDSLMGSASEDDDDDDPPHL---RATALGLGVLGPNGPDSAGGPLGTSDISVQSMS 204
Query: 109 IPS-TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKS 167
S T + G L + +S A N SP S +R RT+ K QL +K+
Sbjct: 205 TDSKNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKT 261
Query: 168 YFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FN P +QLA++TGL RV+Q
Sbjct: 262 AFNQTPKPTRHIREQLAKETGLPMRVIQ 289
>gi|354507888|ref|XP_003515986.1| PREDICTED: LIM homeobox transcription factor 1-beta-like, partial
[Cricetulus griseus]
Length = 243
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 55 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 111
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 112 -----VSPD---------------------ESDSVKSED----------------EDGDM 129
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 130 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 182
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 183 ETLAAETGLSVRVVQ 197
>gi|195456664|ref|XP_002075233.1| GK16904 [Drosophila willistoni]
gi|194171318|gb|EDW86219.1| GK16904 [Drosophila willistoni]
Length = 506
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGRAPSCG 150
Query: 61 ----SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMR 108
S I S P + R L V P P + DI+ M
Sbjct: 151 HNSLSDSIMGSASEDDDDDDPPHL---RGPALGLGVLGPNGPDSAGGPLGTSDISVQSMS 207
Query: 109 IPS-TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKS 167
S T + G L + +S A N SP S +R RT+ K QL +K+
Sbjct: 208 TDSKNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKT 264
Query: 168 YFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FN P +QLA++TGL RV+Q
Sbjct: 265 AFNQTPKPTRHIREQLAKETGLPMRVIQ 292
>gi|198469300|ref|XP_001354984.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
gi|198146805|gb|EAL32040.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
Length = 528
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 150
Query: 61 SAEIEQPM----SPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMR 108
+ + S P + R L V P P + DI+ M
Sbjct: 151 HNSLSDSLMGSASEDDDDDDPPHL---RATALGLGVLGPNGPDSAGGPLGTSDISVQSMS 207
Query: 109 IPS-TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKS 167
S T + G L + +S A N SP S +R RT+ K QL +K+
Sbjct: 208 TDSKNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKT 264
Query: 168 YFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FN P +QLA++TGL RV+Q
Sbjct: 265 AFNQTPKPTRHIREQLAKETGLPMRVIQ 292
>gi|195480019|ref|XP_002101106.1| GE17432 [Drosophila yakuba]
gi|194188630|gb|EDX02214.1| GE17432 [Drosophila yakuba]
Length = 500
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 150
Query: 61 SAEIEQPM----SPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMR 108
+ + S P + R L V P P + DI+ M
Sbjct: 151 HNSLSDSLMGSASEDDDDDDPPHL---RATALGLGVLGPNGPDSAGGPLGTSDISVQSMS 207
Query: 109 IPS-TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKS 167
S T + G L + +S A N SP S +R RT+ K QL +K+
Sbjct: 208 TDSKNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKT 264
Query: 168 YFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FN P +QLA++TGL RV+Q
Sbjct: 265 AFNQTPKPTRHIREQLAKETGLPMRVIQ 292
>gi|194890894|ref|XP_001977402.1| GG19023 [Drosophila erecta]
gi|190649051|gb|EDV46329.1| GG19023 [Drosophila erecta]
Length = 504
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 150
Query: 61 SAEIEQPM----SPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMR 108
+ + S P + R L V P P + DI+ M
Sbjct: 151 HNSLSDSLMGSASEDDDDDDPPHL---RATALGLGVLGPNGPDSAGGPLGTSDISVQSMS 207
Query: 109 IPS-TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKS 167
S T + G L + +S A N SP S +R RT+ K QL +K+
Sbjct: 208 TDSKNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKT 264
Query: 168 YFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FN P +QLA++TGL RV+Q
Sbjct: 265 AFNQTPKPTRHIREQLAKETGLPMRVIQ 292
>gi|18858205|ref|NP_572505.1| Lim1, isoform A [Drosophila melanogaster]
gi|39841014|gb|AAD55417.2|AF181631_1 GH04929p [Drosophila melanogaster]
gi|6252420|dbj|BAA86224.1| dLim1 [Drosophila melanogaster]
gi|22833027|gb|AAF46413.2| Lim1, isoform A [Drosophila melanogaster]
gi|220943666|gb|ACL84376.1| Lim1-PA [synthetic construct]
gi|220953602|gb|ACL89344.1| Lim1-PA [synthetic construct]
Length = 505
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 150
Query: 61 SAEIEQPM----SPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMR 108
+ + S P + R L V P P + DI+ M
Sbjct: 151 HNSLSDSLMGSASEDDDDDDPPHL---RATALGLGVLGPNGPDSAGGPLGTSDISVQSMS 207
Query: 109 IPS-TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKS 167
S T + G L + +S A N SP S +R RT+ K QL +K+
Sbjct: 208 TDSKNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKT 264
Query: 168 YFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FN P +QLA++TGL RV+Q
Sbjct: 265 AFNQTPKPTRHIREQLAKETGLPMRVIQ 292
>gi|194769270|ref|XP_001966729.1| GF19125 [Drosophila ananassae]
gi|190618250|gb|EDV33774.1| GF19125 [Drosophila ananassae]
Length = 500
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 150
Query: 61 SAEIEQPM----SPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMR 108
+ + S P + R L V P P + DI+ M
Sbjct: 151 HNSLSDSLMGSASEDDDDDDPPHL---RATALGLGVLGPNGPDSAGGPLGTSDISVQSMS 207
Query: 109 IPS-TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKS 167
S T + G L + +S A N SP S +R RT+ K QL +K+
Sbjct: 208 TDSKNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKT 264
Query: 168 YFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
FN P +QLA++TGL RV+Q
Sbjct: 265 AFNQTPKPTRHIREQLAKETGLPMRVIQ 292
>gi|195049216|ref|XP_001992673.1| GH24084 [Drosophila grimshawi]
gi|193893514|gb|EDV92380.1| GH24084 [Drosophila grimshawi]
Length = 501
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 15/205 (7%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 150
Query: 61 SAEI-EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMRIPS 111
+ + M R L V P P + DI+ M S
Sbjct: 151 HNSLSDSLMGSASEDEDDDDPPHLRGPALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDS 210
Query: 112 -TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
T + G L + +S A N SP S +R RT+ K QL +K+ FN
Sbjct: 211 KNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKTAFN 267
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
P +QLA++TGL RV+Q
Sbjct: 268 QTPKPTRHIREQLAKETGLPMRVIQ 292
>gi|348569787|ref|XP_003470679.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Cavia
porcellus]
Length = 402
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDM 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPT-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 250 ETLAAETGLSVRVVQ 264
>gi|195400977|ref|XP_002059092.1| GJ15180 [Drosophila virilis]
gi|194141744|gb|EDW58161.1| GJ15180 [Drosophila virilis]
Length = 498
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 15/205 (7%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 150
Query: 61 SAEI-EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMRIPS 111
+ + M R L V P P + DI+ M S
Sbjct: 151 HNSLSDSLMGSASEDEDDDDPPHLRGPALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDS 210
Query: 112 -TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
T + G L + +S A N SP S +R RT+ K QL +K+ FN
Sbjct: 211 KNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKTAFN 267
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
P +QLA++TGL RV+Q
Sbjct: 268 QTPKPTRHIREQLAKETGLPMRVIQ 292
>gi|195130757|ref|XP_002009817.1| GI15570 [Drosophila mojavensis]
gi|193908267|gb|EDW07134.1| GI15570 [Drosophila mojavensis]
Length = 503
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 15/205 (7%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 150
Query: 61 SAEI-EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMRIPS 111
+ + M R L V P P + DI+ M S
Sbjct: 151 HNSLSDSLMGSASEDEDDDDPPHLRGPALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDS 210
Query: 112 -TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
T + G L + +S A N SP S +R RT+ K QL +K+ FN
Sbjct: 211 KNTHDDSDQGSLDGDPDGRG-DSQAENKSPDDANGSKRRGP--RTTIKAKQLEVLKTAFN 267
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
P +QLA++TGL RV+Q
Sbjct: 268 QTPKPTRHIREQLAKETGLPMRVIQ 292
>gi|432113616|gb|ELK35898.1| LIM/homeobox protein Lhx1 [Myotis davidii]
Length = 272
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 37/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY +
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKF-------VCKEDYLSN 121
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ + + S A P LS DS P +D
Sbjct: 122 SSVAKENSLHSA------TTGSDP---SLSPDSQDPSQDDAK------------------ 154
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S ++S + G N + + + +R RT+ K QL T+K+ F P +
Sbjct: 155 -DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|91078266|ref|XP_971202.1| PREDICTED: similar to GA10520-PA [Tribolium castaneum]
Length = 343
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + ++ +H C C C + L + +RD IYC+ DY S
Sbjct: 91 SDKFLLEVSGRSWHARCLRCCVCQLQLDRQPSCFIRDRAIYCKA--------DYAKSFGA 142
Query: 65 EQPMSPR---PAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM-LHSG 120
+ + R + W V+K R L+ + A R ST E LH
Sbjct: 143 KCSVCSRGISSSDW----VRKARDHVYHLACFAC--------AACHRQLSTGEEFALHED 190
Query: 121 DLSSSMESLSYESGAGNSSP----GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ L G SS G H + + KR+RT+F QL+ +++ F ++ NPD
Sbjct: 191 RVLCKAHYLETLDGGTTSSDDGCDAEGYHKN-KAKRVRTTFTEEQLQVLQANFQLDSNPD 249
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++AQ TGLSKRV Q
Sbjct: 250 GQDLERIAQITGLSKRVTQ 268
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GISSS+ V +ARD V+HL CF C +C L+ G+ F + ++ + C+ HY
Sbjct: 150 GISSSDWVRKARDHVYHLACFACAACHRQLSTGEEFALHEDRVLCKAHY 198
>gi|46394864|gb|AAS91588.1| Lim1 [Oryctolagus cuniculus]
Length = 348
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 11 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 62
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 63 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 96
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 97 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 152
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 153 EQLAQETGLNMRVIQ 167
>gi|345805844|ref|XP_003435360.1| PREDICTED: LIM homeobox transcription factor 1-beta [Canis lupus
familiaris]
Length = 487
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 207 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 264
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 265 ----------SPDESDSVK-----------------SED----------------EDGDM 281
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 282 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 334
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 335 ETLAAETGLSVRVVQ 349
>gi|270004863|gb|EFA01311.1| arrowhead [Tribolium castaneum]
Length = 349
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + ++ +H C C C + L + +RD IYC+ DY S
Sbjct: 77 SDKFLLEVSGRSWHARCLRCCVCQLQLDRQPSCFIRDRAIYCKA--------DYAKSFGA 128
Query: 65 EQPMSPR---PAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM-LHSG 120
+ + R + W V+K R L+ + A R ST E LH
Sbjct: 129 KCSVCSRGISSSDW----VRKARDHVYHLACFAC--------AACHRQLSTGEEFALHED 176
Query: 121 DLSSSMESLSYESGAGNSSP----GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ L G SS G H + + KR+RT+F QL+ +++ F ++ NPD
Sbjct: 177 RVLCKAHYLETLDGGTTSSDDGCDAEGYHKN-KAKRVRTTFTEEQLQVLQANFQLDSNPD 235
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++AQ TGLSKRV Q
Sbjct: 236 GQDLERIAQITGLSKRVTQ 254
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GISSS+ V +ARD V+HL CF C +C L+ G+ F + ++ + C+ HY
Sbjct: 136 GISSSDWVRKARDHVYHLACFACAACHRQLSTGEEFALHEDRVLCKAHY 184
>gi|1708562|sp|P53410.1|ISL2_CHICK RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531181|gb|AAA62172.1| sequence encoding 37 predicted 5' amino acids has not been
determined, partial [Gallus gallus]
Length = 319
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 74/194 (38%), Gaps = 56/194 (28%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
SSS+LVMRARD V+HL CF C +CG L GD F LR RD
Sbjct: 58 AFSSSDLVMRARDHVYHLECFRCAACGRQLLPGDQF--------------CLRERDLLCR 103
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
A+ P P PR SP PP + V P H
Sbjct: 104 ADHGPP---------PDGAAARGPR-------SPAPPPAHLAEPVPGRPPGPRPQSHK-- 145
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ ++T R+RT QL T+++ + N PDA +
Sbjct: 146 ------------------------AAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKE 181
Query: 182 QLAQKTGLSKRVLQ 195
QL + TGLS RV++
Sbjct: 182 QLVEMTGLSPRVIR 195
>gi|359070468|ref|XP_002691651.2| PREDICTED: uncharacterized protein LOC100337389 [Bos taurus]
Length = 779
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 499 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 556
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
++ S + SED GD+
Sbjct: 557 SPDESDSVK---------------------------SED----------------EDGDM 573
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 574 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 626
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 627 ETLAAETGLSVRVVQ 641
>gi|114626799|ref|XP_001141606.1| PREDICTED: LIM homeobox transcription factor 1-beta [Pan
troglodytes]
Length = 623
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 343 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 400
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 401 ----------SPDESDSVK-----------------SED----------------EDGDM 417
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 418 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 470
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 471 ETLAAETGLSVRVVQ 485
>gi|125823566|ref|XP_001339831.1| PREDICTED: LIM/homeobox protein Lhx8-like [Danio rerio]
Length = 356
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ D+ +H C +C C L++ +R+ I+C+ HY R + +C
Sbjct: 98 LLKVNDMCWHARCLSCSVCQTTLSEQTTCYVREREIFCKLHY-FRRFQTWCSCCR----E 152
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
+ + W V + + L+ S ++ + L +H SS +
Sbjct: 153 TLHSSDW----VHRAKGNVYHLACFSCFSCKRQLSTGEEFALVGEKLLCRIH---YSSML 205
Query: 127 ESLSYESGAGNS-SP----GSGVHSHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ L+ + G S SP +G Q+ +KR RTSF QL+ M++ F + NPDA+ L
Sbjct: 206 DKLNRPAEKGKSVSPEKALAAGCEIKQKPSKRARTSFTADQLQVMQAQFVQDNNPDAQML 265
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA++TGLS+RV+Q
Sbjct: 266 QSLAEQTGLSRRVIQ 280
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ SS+ V RA+ V+HL CF+C SC L+ G+ F + E + CR HY
Sbjct: 154 LHSSDWVHRAKGNVYHLACFSCFSCKRQLSTGEEFALVGEKLLCRIHY 201
>gi|195125467|ref|XP_002007199.1| GI12512 [Drosophila mojavensis]
gi|193918808|gb|EDW17675.1| GI12512 [Drosophila mojavensis]
Length = 239
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RARDLVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 39 GISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 87
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 137 NSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+ G G H +TKR+RT+F QL+ +++ F I+ NPD +DL+++A TGLSKRV Q
Sbjct: 100 DGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQ 157
>gi|6980082|gb|AAF34717.1|AF226616_1 LIM-homeodomain transcription factor islet [Branchiostoma floridae]
Length = 419
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 68/204 (33%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH----- 55
+G + ++ VMRA++ ++H+ CF C++C L GD F +R++ ++C+ +E+L
Sbjct: 82 LGFTKNDFVMRAKNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADHEVLERASNNV 141
Query: 56 ----RDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPS 111
R GS ++E M+ RP GR +R+ V
Sbjct: 142 DSNGRASLGSTDLE--MATRPE-------SHGRSDQRRPQV------------------- 173
Query: 112 TTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNI 171
H D H+ T+ +RT QL T+++ +
Sbjct: 174 ------HKQD------------------------GHKPTR-VRTVLNEKQLHTLRTCYAA 202
Query: 172 NQNPDAKDLKQLAQKTGLSKRVLQ 195
N PDA +QL + TGLS RV++
Sbjct: 203 NPRPDALMKEQLVEMTGLSPRVIR 226
>gi|157128769|ref|XP_001661512.1| arrowhead [Aedes aegypti]
gi|108872464|gb|EAT36689.1| AAEL011247-PA [Aedes aegypti]
Length = 271
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 18/181 (9%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPWQ 76
+H C C C LL + RD +YCR Y G+ + + P+ W
Sbjct: 42 WHGSCLRCSVCLTLLERQPSCYFRDRQVYCRSDYAKTF-----GAKCSKCSRTIAPSDW- 95
Query: 77 PTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSMESLSYESG 134
V+K R L+ S ++ I + +H D + S S
Sbjct: 96 ---VRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCKIHYMDNADDSNS----SD 148
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
G S+ G + ++KR+RT+F QL +++ F I+ NPD +DL+++AQ TGLSKRV
Sbjct: 149 DGCSTDG---FNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQDLERIAQLTGLSKRVT 205
Query: 195 Q 195
Q
Sbjct: 206 Q 206
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I+ S+ V +ARDLVFHL CF+C +CG L+ G+ F + D+ + C+ HY
Sbjct: 90 IAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCKIHY 137
>gi|358414621|ref|XP_003582878.1| PREDICTED: LIM homeobox transcription factor 1-beta [Bos taurus]
Length = 315
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 35 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 92
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 93 ----------SPDESDSVK-----------------SED----------------EDGDM 109
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 110 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 162
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 163 ETLAAETGLSVRVVQ 177
>gi|390458375|ref|XP_002743346.2| PREDICTED: LIM homeobox transcription factor 1-beta [Callithrix
jacchus]
Length = 638
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 358 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 415
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
++ S + SED GD+
Sbjct: 416 SPDESDSVK---------------------------SED----------------EDGDM 432
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 433 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 485
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 486 ETLAAETGLSVRVVQ 500
>gi|355567904|gb|EHH24245.1| LIM/homeobox protein LMX1B [Macaca mulatta]
Length = 367
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 87 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 144
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 145 ----------SPDESDSVK-----------------SED----------------EDGDM 161
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 162 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 214
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 215 ETLAAETGLSVRVVQ 229
>gi|291405647|ref|XP_002719296.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 406
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|74187870|dbj|BAE24561.1| unnamed protein product [Mus musculus]
Length = 406
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLNSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|195375542|ref|XP_002046559.1| GJ12418 [Drosophila virilis]
gi|194153717|gb|EDW68901.1| GJ12418 [Drosophila virilis]
Length = 239
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RARDLVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 39 GISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 87
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 133 SGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 192
+ + + G G H +TKR+RT+F QL+ +++ F I+ NPD +DL+++A TGLSKR
Sbjct: 96 TSSDDGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKR 154
Query: 193 VLQ 195
V Q
Sbjct: 155 VTQ 157
>gi|8248965|gb|AAC60669.2| lateral and intermediate mesoderm differentiation and neurogenesis
protein [Mus sp.]
Length = 407
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|301761900|ref|XP_002916368.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 3
[Ailuropoda melanoleuca]
Length = 406
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDM 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 250 ETLAAETGLSVRVVQ 264
>gi|344271900|ref|XP_003407775.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Loxodonta africana]
Length = 406
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDM 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 250 ETLAAETGLSVRVVQ 264
>gi|29500723|gb|AAO74860.1| LMX1B [Canis lupus familiaris]
Length = 309
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 40 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 97
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 98 ----------SPDESDSVK-----------------SED----------------EDGDM 114
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 115 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 167
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 168 ETLAAETGLSVRVVQ 182
>gi|292494913|ref|NP_001167617.1| LIM homeobox transcription factor 1-beta isoform 3 [Homo sapiens]
Length = 406
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDM 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 250 ETLAAETGLSVRVVQ 264
>gi|3348118|gb|AAC27793.1| LIM homeodomain protein [Mus musculus]
Length = 372
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 155
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 156 -----VSPD---------------------ESDSVKSED----------------EDGDM 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 174 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 226
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 227 ETLAAETGLSVRVVQ 241
>gi|355763645|gb|EHH62200.1| LIM/homeobox protein LMX1B [Macaca fascicularis]
Length = 379
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 103 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 159
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 160 -----VSPD---------------------ESDSVKSED----------------EDGDM 177
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 178 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 230
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 231 ETLAAETGLSVRVVQ 245
>gi|292494911|ref|NP_002307.2| LIM homeobox transcription factor 1-beta isoform 1 [Homo sapiens]
gi|301761898|ref|XP_002916367.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 2
[Ailuropoda melanoleuca]
gi|344271898|ref|XP_003407774.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Loxodonta africana]
gi|306921455|dbj|BAJ17807.1| LIM homeobox transcription factor 1, beta [synthetic construct]
gi|387541732|gb|AFJ71493.1| LIM homeobox transcription factor 1-beta isoform 1 [Macaca mulatta]
Length = 395
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDM 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 250 ETLAAETGLSVRVVQ 264
>gi|440898169|gb|ELR49722.1| LIM homeobox transcription factor 1-beta [Bos grunniens mutus]
Length = 392
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 112 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 169
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 170 ----------SPDESDSVK-----------------SED----------------EDGDM 186
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 187 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 239
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 240 ETLAAETGLSVRVVQ 254
>gi|6678688|ref|NP_032524.1| LIM/homeobox protein Lhx1 [Mus musculus]
gi|94400804|ref|NP_665887.3| LIM/homeobox protein Lhx1 [Rattus norvegicus]
gi|354477124|ref|XP_003500772.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cricetulus griseus]
gi|51702761|sp|P63007.1|LHX1_RAT RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Rlim
gi|51702763|sp|P63006.1|LHX1_MOUSE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|51702764|sp|P63008.1|LHX1_MESAU RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein LMX-2; AltName:
Full=Homeobox protein Lim-1
gi|2144068|pir||I58187 homeotic protein lim-1 - rat
gi|425217|emb|CAA81797.1| lim1 [Mus musculus]
gi|559636|gb|AAC60696.1| transcription factor [Rattus sp.]
gi|587463|emb|CAA57164.1| lmx2 [Mesocricetus auratus]
gi|4104801|gb|AAD02169.1| homeobox protein Lim1 [Mus musculus]
gi|62201098|gb|AAH92374.1| Lhx1 protein [Mus musculus]
gi|148683791|gb|EDL15738.1| LIM homeobox protein 1 [Mus musculus]
gi|149053699|gb|EDM05516.1| LIM homeobox protein 1 [Rattus norvegicus]
Length = 406
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|55846812|gb|AAV67410.1| LIM homeobox protein 1 [Macaca fascicularis]
Length = 403
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 66 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 117
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 118 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 151
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 152 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 207
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 208 EQLAQETGLNMRVIQ 222
>gi|410979116|ref|XP_003995932.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Felis catus]
Length = 406
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDM 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 250 ETLAAETGLSVRVVQ 264
>gi|219520075|gb|AAI43802.1| LMX1B protein [Homo sapiens]
Length = 383
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 155
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 156 -----VSPD---------------------ESDSVKSED----------------EDGDM 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 174 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 226
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 227 ETLAAETGLSVRVVQ 241
>gi|76573889|ref|NP_001029088.1| LIM/homeobox protein Lhx1 [Pan troglodytes]
gi|297700651|ref|XP_002827352.1| PREDICTED: LIM/homeobox protein Lhx1 [Pongo abelii]
gi|311267821|ref|XP_003131754.1| PREDICTED: LIM/homeobox protein Lhx1-like [Sus scrofa]
gi|348567695|ref|XP_003469634.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cavia porcellus]
gi|359320451|ref|XP_003639347.1| PREDICTED: LIM/homeobox protein Lhx1-like [Canis lupus familiaris]
gi|397494263|ref|XP_003818003.1| PREDICTED: LIM/homeobox protein Lhx1 [Pan paniscus]
gi|402899902|ref|XP_003912923.1| PREDICTED: LIM/homeobox protein Lhx1 [Papio anubis]
gi|403274736|ref|XP_003929119.1| PREDICTED: LIM/homeobox protein Lhx1 [Saimiri boliviensis
boliviensis]
gi|410980542|ref|XP_003996636.1| PREDICTED: LIM/homeobox protein Lhx1 [Felis catus]
gi|426348609|ref|XP_004041924.1| PREDICTED: LIM/homeobox protein Lhx1 [Gorilla gorilla gorilla]
gi|60389888|sp|Q5IS44.1|LHX1_PANTR RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|60389889|sp|Q5IS89.1|LHX1_SAIBB RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|56122252|gb|AAV74277.1| LIM homeobox protein 1 [Saimiri boliviensis]
gi|56122342|gb|AAV74322.1| LIM homeobox protein 1 [Pan troglodytes]
gi|355568607|gb|EHH24888.1| LIM/homeobox protein Lhx1 [Macaca mulatta]
gi|444720995|gb|ELW61755.1| LIM/homeobox protein Lhx1 [Tupaia chinensis]
Length = 406
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|431890885|gb|ELK01764.1| LIM/homeobox protein Lhx1 [Pteropus alecto]
Length = 406
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|255759880|ref|NP_034855.2| LIM homeobox transcription factor 1-beta [Mus musculus]
gi|109112190|ref|XP_001097412.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Macaca mulatta]
gi|297685370|ref|XP_002820263.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Pongo abelii]
gi|395824199|ref|XP_003785358.1| PREDICTED: LIM homeobox transcription factor 1-beta [Otolemur
garnettii]
gi|403299811|ref|XP_003940668.1| PREDICTED: LIM homeobox transcription factor 1-beta [Saimiri
boliviensis boliviensis]
gi|410979114|ref|XP_003995931.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Felis catus]
gi|341940912|sp|O88609.2|LMX1B_MOUSE RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|3132909|gb|AAC39738.1| LIM homeodomain protein LMX1B [Homo sapiens]
gi|47479658|gb|AAH69601.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|85567565|gb|AAI12121.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|109731283|gb|AAI13492.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|111600533|gb|AAI19170.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|116138517|gb|AAI25470.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|119608048|gb|EAW87642.1| LIM homeobox transcription factor 1, beta, isoform CRA_b [Homo
sapiens]
gi|148676655|gb|EDL08602.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|312150934|gb|ADQ31979.1| LIM homeobox transcription factor 1, beta [synthetic construct]
gi|313882992|gb|ADR82982.1| LIM homeobox transcription factor 1, beta (LMX1B) [synthetic
construct]
Length = 372
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 155
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 156 -----VSPD---------------------ESDSVKSED----------------EDGDM 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 174 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 226
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 227 ETLAAETGLSVRVVQ 241
>gi|296201935|ref|XP_002748333.1| PREDICTED: LIM/homeobox protein Lhx1 [Callithrix jacchus]
Length = 406
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|62859483|ref|NP_001016082.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|89269010|emb|CAJ81605.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|189441838|gb|AAI67665.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624072|gb|AAI70608.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624092|gb|AAI70634.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
Length = 402
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 44/198 (22%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYC 59
+GIS S+LV +AR+ VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 LGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCK--------EDYA 120
Query: 60 GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHS 119
++ +++ + R LS D P I + E HS
Sbjct: 121 SASSLKES----------SLNSVSSCTDRSLSPDLQDP-----------IQDESKETDHS 159
Query: 120 GDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRM--RTSFKHHQLRTMKSYFNINQNPDA 177
SS E+ + E+ NS TKR RT+ K QL T+K+ F P
Sbjct: 160 --TSSDKETANNENEEQNSG----------TKRRGPRTTIKAKQLETLKAAFAATPKPTR 207
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 208 HIREQLAQETGLNMRVIQ 225
>gi|297685372|ref|XP_002820264.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Pongo abelii]
Length = 383
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 155
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 156 -----VSPD---------------------ESDSVKSED----------------EDGDM 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 174 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 226
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 227 ETLAAETGLSVRVVQ 241
>gi|149551088|ref|XP_001517055.1| PREDICTED: LIM/homeobox protein Lhx5-like, partial [Ornithorhynchus
anatinus]
Length = 231
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR+ VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 21 GISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------EDYLN 72
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+ + + R LS D P +D P T S
Sbjct: 73 S----------PSLKEGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDHSTSSD 114
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 115 KEAANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 161
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 162 EQLAQETGLNMRVIQ 176
>gi|332258740|ref|XP_003278453.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1 [Nomascus
leucogenys]
Length = 374
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 85/194 (43%), Gaps = 37/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY +
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKF-------VCKEDYLSN 121
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ + + S A TT LS DS P +D
Sbjct: 122 SSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK------------------ 154
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S ++S + G N + + + +R RT+ K QL T+K+ F P +
Sbjct: 155 -DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|417410318|gb|JAA51634.1| Putative lim homeobox transcription factor 1-beta, partial
[Desmodus rotundus]
Length = 391
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 118 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 175
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 176 ----------SPDESDSVK-----------------SED----------------EDGDM 192
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 193 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 245
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 246 ETLAAETGLSVRVVQ 260
>gi|301776020|ref|XP_002923422.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1-like
[Ailuropoda melanoleuca]
Length = 405
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|297271296|ref|XP_002800229.1| PREDICTED: LIM homeobox transcription factor 1-beta [Macaca
mulatta]
Length = 385
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 155
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 156 -----VSPD---------------------ESDSVKSED----------------EDGDM 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 174 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 226
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 227 ETLAAETGLSVRVVQ 241
>gi|157428018|ref|NP_001098917.1| LIM/homeobox protein Lhx1 [Bos taurus]
gi|358417202|ref|XP_003583582.1| PREDICTED: LIM/homeobox protein Lhx1-like [Bos taurus]
gi|157279406|gb|AAI53213.1| LHX1 protein [Bos taurus]
gi|296477035|tpg|DAA19150.1| TPA: LIM homeobox protein 1 [Bos taurus]
gi|440905066|gb|ELR55504.1| LIM/homeobox protein Lhx1 [Bos grunniens mutus]
Length = 406
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|241811703|ref|XP_002416452.1| lim homeobox protein, putative [Ixodes scapularis]
gi|215510916|gb|EEC20369.1| lim homeobox protein, putative [Ixodes scapularis]
Length = 155
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ SELVMRA + VFH+ CF C+ CG L KGD F +R +YCRP +E
Sbjct: 13 IAPSELVMRALEHVFHVACFACVVCGRTLQKGDQFVVRSGRLYCRPDFE 61
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 127 ESLSYESGAG-NSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQ 185
+ ++ GAG N P + KR RT Q R K+ F I+Q P K + LA+
Sbjct: 62 KEMALVPGAGQNGQPAVRPDGRRGPKRPRTILTTAQRRAFKASFEISQKPCRKVRETLAK 121
Query: 186 KTGLSKRVLQ 195
+TGLS R++Q
Sbjct: 122 ETGLSVRIVQ 131
>gi|292494915|ref|NP_001167618.1| LIM homeobox transcription factor 1-beta isoform 2 [Homo sapiens]
gi|301761896|ref|XP_002916366.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 1
[Ailuropoda melanoleuca]
gi|344271902|ref|XP_003407776.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Loxodonta africana]
gi|410979112|ref|XP_003995930.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Felis catus]
gi|281340079|gb|EFB15663.1| hypothetical protein PANDA_004429 [Ailuropoda melanoleuca]
Length = 402
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDM 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 250 ETLAAETGLSVRVVQ 264
>gi|410979118|ref|XP_003995933.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 4
[Felis catus]
Length = 382
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 155
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 156 -----VSPD---------------------ESDSVKSED----------------EDGDM 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 174 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 226
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 227 ETLAAETGLSVRVVQ 241
>gi|426238599|ref|XP_004013238.1| PREDICTED: LIM/homeobox protein Lhx1 [Ovis aries]
Length = 388
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|417410392|gb|JAA51670.1| Putative lim homeobox transcription factor 1-beta, partial
[Desmodus rotundus]
Length = 398
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 118 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 175
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 176 ----------SPDESDSVK-----------------SED----------------EDGDM 192
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 193 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 245
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 246 ETLAAETGLSVRVVQ 260
>gi|8247930|sp|O60663.2|LMX1B_HUMAN RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|3335524|gb|AAC27294.1| LIM homeodomain protein [Homo sapiens]
gi|119608047|gb|EAW87641.1| LIM homeobox transcription factor 1, beta, isoform CRA_a [Homo
sapiens]
Length = 379
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 156
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 157 ----------SPDESDSVK-----------------SED----------------EDGDM 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 174 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 226
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 227 ETLAAETGLSVRVVQ 241
>gi|47480835|gb|AAH69588.1| LMX1B protein [Homo sapiens]
Length = 377
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 97 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 154
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 155 ----------SPDESDSVK-----------------SED----------------EDGDM 171
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 172 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 224
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 225 ETLAAETGLSVRVVQ 239
>gi|444721284|gb|ELW62028.1| LIM homeobox transcription factor 1-beta [Tupaia chinensis]
Length = 471
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 79/193 (40%), Gaps = 50/193 (25%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 18 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 75
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 76 ----------SPDESDSVK-----------------SED----------------EDGDM 92
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ S G+G+ +R KR RT Q R K+ F ++ P K +
Sbjct: 93 KPAKGQGSQNKGSGDDG-----KDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRET 147
Query: 183 LAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 148 LAAETGLSVRVVQ 160
>gi|397473155|ref|XP_003808084.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta [Pan paniscus]
Length = 402
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDM 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 250 ETLAAETGLSVRVVQ 264
>gi|344235434|gb|EGV91537.1| LIM homeobox transcription factor 1-beta [Cricetulus griseus]
Length = 233
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 4 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 60
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 61 -----VSPD---------------------ESDSVKSED----------------EDGDM 78
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 79 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 131
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 132 ETLAAETGLSVRVVQ 146
>gi|156364672|ref|XP_001626470.1| predicted protein [Nematostella vectensis]
gi|156213347|gb|EDO34370.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G+ SP S + KR+RT+F QL+ +++ FNI+ NPD +DL+++AQ TGLSKRV Q
Sbjct: 166 GDDSPNSLKSGRHKAKRVRTTFTEDQLQILQANFNIDSNPDGQDLERIAQLTGLSKRVTQ 225
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY-EIL----RHRD 57
I +++ V RA++ V+HL CF C +C L+ G+ F ++D + C+ HY E L RD
Sbjct: 96 IHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCKLHYLEALDTSPAERD 155
Query: 58 YCGSAEIEQPMSPR-PAPWQPTTVQKGRPRKRKL 90
Y ++ SP P +++ GR + +++
Sbjct: 156 Y------QEVFSPDVDGDDSPNSLKSGRHKAKRV 183
>gi|385862228|ref|NP_001245353.1| LIM homeobox transcription factor 1-beta [Sus scrofa]
Length = 379
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 156
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 157 ----------SPDESDSVK-----------------SED----------------EDGDM 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 174 KPA-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 226
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 227 ETLAAETGLSVRVVQ 241
>gi|327277087|ref|XP_003223297.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Anolis
carolinensis]
Length = 381
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 73/197 (37%), Gaps = 64/197 (32%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
++ SE +MR + V+H+HCF+C C L +GD F +++ + CR YE
Sbjct: 106 AVAPSEFIMRVLENVYHVHCFSCCECERRLQRGDEFVLKEGQLLCRSDYE---------- 155
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ LS SP P
Sbjct: 156 -----------------------KEREMLSAISPAP------------------------ 168
Query: 122 LSSSMESLSYESGAGN---SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAK 178
ES+ E GN G H+R+KR RT Q R K+ F ++ P K
Sbjct: 169 ----TESVKSEDEDGNHPHGKTGEEGKDHKRSKRPRTILTTQQRRAFKASFEVSSKPCRK 224
Query: 179 DLKQLAQKTGLSKRVLQ 195
+ LA +TGL+ RV+Q
Sbjct: 225 VRETLAAETGLTVRVVQ 241
>gi|312385468|gb|EFR29960.1| hypothetical protein AND_00755 [Anopheles darlingi]
Length = 339
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 76/195 (38%), Gaps = 78/195 (40%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
IS+++ V RAR+ VFHL CF C D CG
Sbjct: 142 ISATDWVRRAREYVFHLACFAC--------------------------------DSCG-- 167
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTT--LEMLHSG 120
R+LS ED R+ T +E++ G
Sbjct: 168 -------------------------RQLSTGEQFAICED------RVLCKTHYMELIDDG 196
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
SS E G G G +TKR+RT+F Q++ +++ F I+ NPD +DL
Sbjct: 197 TTSS-------EDGCDADGSGKG----SKTKRIRTTFTEEQIQILQANFQIDSNPDGQDL 245
Query: 181 KQLAQKTGLSKRVLQ 195
+++A TGLSKRV Q
Sbjct: 246 ERIALATGLSKRVTQ 260
>gi|48375213|gb|AAT42259.1| LIM homeodomain protein Lmx1b.2 [Danio rerio]
Length = 375
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 76/194 (39%), Gaps = 56/194 (28%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
IS +ELVMRA + V+HL CF C C L KGD F +++ + C+ YE R +D
Sbjct: 99 ISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTDYE--REKDL---- 152
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
SP + DS ED++
Sbjct: 153 -----ASPDLS-------------------DSDKSEDEDLDVKP---------------- 172
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
E GAG GS +R KR RT Q R K+ F ++ P K +
Sbjct: 173 ---------EKGAGGQGKGSDDSKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 223
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 224 TLAAETGLSVRVVQ 237
>gi|68448499|ref|NP_001020339.1| LIM homeobox transcription factor 1, beta a [Danio rerio]
gi|62461839|gb|AAX83056.1| LIM homeodomain protein [Danio rerio]
gi|190337362|gb|AAI63321.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
gi|190339774|gb|AAI63333.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
Length = 373
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 76/194 (39%), Gaps = 56/194 (28%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
IS +ELVMRA + V+HL CF C C L KGD F +++ + C+ YE R +D
Sbjct: 97 ISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTDYE--REKDL---- 150
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
SP + DS ED++
Sbjct: 151 -----ASPDLS-------------------DSDKSEDEDLDVKP---------------- 170
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
E GAG GS +R KR RT Q R K+ F ++ P K +
Sbjct: 171 ---------EKGAGGQGKGSDDSKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 221
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 222 TLAAETGLSVRVVQ 235
>gi|339236177|ref|XP_003379643.1| LIM/homeobox protein Awh [Trichinella spiralis]
gi|316977684|gb|EFV60755.1| LIM/homeobox protein Awh [Trichinella spiralis]
Length = 902
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 144 VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH Q+TKR+RT+F QL+ +++ F I+ NPD +DL+++AQ TGLSKRV Q
Sbjct: 749 VHHKQKTKRVRTTFTEEQLQILQANFQIDSNPDGQDLERIAQGTGLSKRVTQ 800
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I S+ V RAR V+HL CF C SC L+ G+ F ++D + C+ HY
Sbjct: 691 IQSNHWVRRARQYVYHLACFACDSCQRQLSTGEEFALQDSRVLCKQHY 738
>gi|327282632|ref|XP_003226046.1| PREDICTED: LIM/homeobox protein Lhx5-like [Anolis carolinensis]
Length = 400
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV +AR VFHL+CFTC+ C L+ G+ + DE + + DY S
Sbjct: 70 GISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEELYIIDENKF-------VCKEDYLSS 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
A ++ + + R LS D P +D P T S
Sbjct: 123 ASLK----------EGSLNSVSSCTDRSLSPDLQDPMQDD--------PKETDNSTSSDK 164
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+++ E+ SG P RT+ K QL T+K+ F P +
Sbjct: 165 ETTNNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|195441498|ref|XP_002068546.1| GK20529 [Drosophila willistoni]
gi|194164631|gb|EDW79532.1| GK20529 [Drosophila willistoni]
Length = 275
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RARDLVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + +H HC C C L + +R+ +YC+ Y +++ G+
Sbjct: 16 SDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCYIRERQVYCKADYS----KNF-GAKCS 70
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEM 116
+ + W V++ R L+ + ++ + + + LE
Sbjct: 71 KCCRGISASDW----VRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLET 126
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ G SS + G G H +TKR+RT+F QL+ +++ F I+ NPD
Sbjct: 127 VEGGTTSSD-----------DGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPD 174
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++A TGLSKRV Q
Sbjct: 175 GQDLERIASVTGLSKRVTQ 193
>gi|351696664|gb|EHA99582.1| LIM/homeobox protein Lhx1 [Heterocephalus glaber]
Length = 406
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 85/194 (43%), Gaps = 37/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY +
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDEN-------KFVCKEDYLSN 121
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ + + S A TT LS DS P +D
Sbjct: 122 SNVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK------------------ 154
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S ++S + G N + + + +R RT+ K QL T+K+ F P +
Sbjct: 155 -DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|291240697|ref|XP_002740254.1| PREDICTED: LIM class homeodomain transcription factor, Lhx6/8
subclass-like [Saccoglossus kowalevskii]
Length = 283
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 19/184 (10%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA--EIEQPMSPRPAP 74
+H+ C C C L +D+ IYC+ Y I + C I+ R A
Sbjct: 42 WHVRCLRCCICQTGLGGQQSCFTKDDNIYCKMDY-IRQFGTKCSRCMRNIQSNDWVRKAK 100
Query: 75 WQPTTVQ--KGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEML-HSGDLSSSMESLSY 131
+ KR+LS E N + + LE+L +S D S + E +
Sbjct: 101 NHVYHLACFACDNCKRQLSTGEEFAMQE----NKVLCKTHYLELLENSSDCSETKEGM-L 155
Query: 132 ESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 191
++G +P RTKR+RT+F QL+ +++ FN++ NPD +DL+++AQ TGLSK
Sbjct: 156 QNGHSRHNP--------RTKRVRTTFTEEQLQVLQANFNVDSNPDGQDLERIAQITGLSK 207
Query: 192 RVLQ 195
RV Q
Sbjct: 208 RVTQ 211
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY-EILRHRDYC 59
I S++ V +A++ V+HL CF C +C L+ G+ F M++ + C+ HY E+L + C
Sbjct: 90 IQSNDWVRKAKNHVYHLACFACDNCKRQLSTGEEFAMQENKVLCKTHYLELLENSSDC 147
>gi|195161060|ref|XP_002021388.1| GL25299 [Drosophila persimilis]
gi|198465223|ref|XP_001353549.2| GA10520 [Drosophila pseudoobscura pseudoobscura]
gi|194118501|gb|EDW40544.1| GL25299 [Drosophila persimilis]
gi|198150064|gb|EAL31062.2| GA10520 [Drosophila pseudoobscura pseudoobscura]
Length = 275
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RARDLVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + +H HC C C L + +R+ +YC+ Y +++ G+
Sbjct: 16 SDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYS----KNF-GAKCS 70
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEM 116
+ + W V++ R L+ + ++ + + + LE
Sbjct: 71 KCCRGISASDW----VRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLET 126
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ G SS G G H +TKR+RT+F QL+ +++ F I+ NPD
Sbjct: 127 VEGGTTSSD-----------EGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPD 174
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++A TGLSKRV Q
Sbjct: 175 GQDLERIASVTGLSKRVTQ 193
>gi|379698940|ref|NP_001243941.1| arrowhead PA [Bombyx mori]
gi|346223348|dbj|BAK78925.1| arrowhead PA [Bombyx mori]
Length = 274
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 43/206 (20%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
+ ++ +H C C C + L + +RD +YC+ +DY S
Sbjct: 16 ADRFLLEVGGAAWHTGCLRCCVCAVQLDRHPSCFLRDRQVYCK--------QDYAKSFGA 67
Query: 65 EQPMSPR---PAPWQPTTVQKGRPR------------KRKLSVDSPTPPSEDINANVMRI 109
+ R + W V+K R + R+LS ED V+
Sbjct: 68 KCSKCCRGISSSDW----VRKAREQVYHLACFACDACGRQLSTGEQFALHED---RVLCK 120
Query: 110 PSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYF 169
P LE L G +SS + G H + KR+RT+F QL+ +++ F
Sbjct: 121 PHY-LETLDGGSISSD-----------DGCDSEGYHK-SKAKRVRTTFTEEQLQVLQANF 167
Query: 170 NINQNPDAKDLKQLAQKTGLSKRVLQ 195
++ NPD +DL+++AQ TGLSKRV Q
Sbjct: 168 QLDSNPDGQDLERIAQVTGLSKRVTQ 193
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GISSS+ V +AR+ V+HL CF C +CG L+ G+ F + ++ + C+PHY
Sbjct: 75 GISSSDWVRKAREQVYHLACFACDACGRQLSTGEQFALHEDRVLCKPHY 123
>gi|344285733|ref|XP_003414614.1| PREDICTED: LIM/homeobox protein Lhx1-like [Loxodonta africana]
Length = 406
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSLAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + G N + + + +R RT+ K QL T+K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|194749355|ref|XP_001957104.1| GF24228 [Drosophila ananassae]
gi|190624386|gb|EDV39910.1| GF24228 [Drosophila ananassae]
Length = 275
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RARDLVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + +H HC C C L + +R+ +YC+ Y +++ G+
Sbjct: 16 SDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYS----KNF-GAKCS 70
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEM 116
+ + W V++ R L+ + ++ + + + LE
Sbjct: 71 KCCRGISASDW----VRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLET 126
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ G SS + G G H +TKR+RT+F QL+ +++ F I+ NPD
Sbjct: 127 VEGGTTSSD-----------DGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPD 174
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++A TGLSKRV Q
Sbjct: 175 GQDLERIASVTGLSKRVTQ 193
>gi|148707230|gb|EDL39177.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
Length = 352
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G S G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGASEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|67003890|gb|AAY60840.1| LIM/homeobox protein 29, partial [Lampetra fluviatilis]
Length = 36
Score = 63.2 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/34 (85%), Positives = 32/34 (94%)
Query: 162 LRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
LRTMKSYF +N +PDAKDLKQLAQKTGL+KRVLQ
Sbjct: 1 LRTMKSYFALNHDPDAKDLKQLAQKTGLTKRVLQ 34
>gi|296482212|tpg|DAA24327.1| TPA: LIM homeobox transcription factor 1, beta-like [Bos taurus]
Length = 1019
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 50/193 (25%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 739 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 796
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
++ S + SED + GD+
Sbjct: 797 SPDESDSVK---------------------------SEDED----------------GDM 813
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ S G+G+ +R KR RT Q R K+ F ++ P K +
Sbjct: 814 KPAKGQGSQSKGSGDDG-----KDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRET 868
Query: 183 LAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 869 LAAETGLSVRVVQ 881
>gi|395530698|ref|XP_003767425.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Sarcophilus
harrisii]
Length = 382
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 78/194 (40%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKER------- 152
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
E+ +SP ++ DS ED
Sbjct: 153 -ELLSLVSP-------------------VASDSGKSDDED-------------------- 172
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ + +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 173 ---SLCKAGHGTGKGVAEDGK---DHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|312089563|ref|XP_003146293.1| hypothetical protein LOAG_10721 [Loa loa]
gi|307758541|gb|EFO17775.1| hypothetical protein LOAG_10721 [Loa loa]
Length = 212
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE-ILRHRDYCGS 61
+ S++ V R ++HLHCF C CG L KGD + + D I CRP YE +L C S
Sbjct: 7 VQSTDYVYRVFASIYHLHCFKCFCCGHLFKKGDHYMLLDGQIICRPDYEHLLCQAPMCQS 66
Query: 62 -AEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
+Q S R P +P T+ + RK KL+ + + P + + + + ++ ++
Sbjct: 67 HLYFDQNDSNRKTPKRPRTILNTQQRKAFKLAFEKTSKPCRKVREQLAKETNLSVRVV 124
>gi|390356846|ref|XP_785118.3| PREDICTED: LIM/homeobox protein Awh-like [Strongylocentrotus
purpuratus]
Length = 335
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKR+RT+F QL +++ FN++ NPD +DL+++AQ TGLSKRV Q
Sbjct: 183 QQKTKRIRTTFTEEQLEVLQANFNVDSNPDGQDLERIAQITGLSKRVTQ 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I +S+ V RAR+ ++HL CF C +C L+ G+ F M + + C+ HY
Sbjct: 106 IDASDWVRRARENIYHLACFACDNCKRQLSTGEEFAMIENRVLCKSHY 153
>gi|293339636|gb|ADE44110.1| tailup [Megaselia abdita]
Length = 348
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 40/194 (20%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRD-EMIYCRPHYEILRHRDYCGS 61
S ++ VMRAR +FH+ CF C +C I L G F +RD ++YC+ ++IL
Sbjct: 58 FSRNDYVMRARTKIFHMDCFRCNTCAIQLKPGQEFALRDGGVLYCKEDHDIL-------- 109
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+K + S+++ + + N + + S + SG
Sbjct: 110 -------------------EKSHSQTNISSIETNNNTNLNNNNHSSELGSLS----DSGS 146
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S S +S+ + +G P G + R+RT QL T+++ +N N PDA +
Sbjct: 147 ESGSHKSIREKRPSG---PSDG-----KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKE 198
Query: 182 QLAQKTGLSKRVLQ 195
QL + TGLS RV++
Sbjct: 199 QLVEMTGLSPRVIR 212
>gi|158287501|ref|XP_309513.3| AGAP011134-PA [Anopheles gambiae str. PEST]
gi|157019681|gb|EAA05265.3| AGAP011134-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 14/203 (6%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRH----- 55
GI+ S+LV + RD VFHL+CFTC C ++ G+ L+ + D C+ Y + +
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQISTGEQLYVLDDNKFICKDDYILGKGPHPMT 151
Query: 56 RDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE 115
GSA ++ + P + G L + D++ M ST +
Sbjct: 152 DSLMGSASEDEDEEDQMRPGVLAGLVSGGAGAAGLHHGDGPLGASDLSVQSM---STDSK 208
Query: 116 MLHSGDLSSSMES---LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNIN 172
H S++ +S A N SP G S +R RT+ K QL +K+ F+
Sbjct: 209 TGHDDSDQGSLDGDPDCRGDSQAENKSPDDGAGSKRRGP--RTTIKAKQLEVLKNAFSQT 266
Query: 173 QNPDAKDLKQLAQKTGLSKRVLQ 195
P +QLA++TGL RV+Q
Sbjct: 267 PKPTRHIREQLAKETGLPMRVIQ 289
>gi|149058121|gb|EDM09278.1| LIM homeobox transcription factor 1 alpha (predicted) [Rattus
norvegicus]
Length = 263
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 78/194 (40%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKER------- 152
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
E+ +SP + DS E+
Sbjct: 153 -ELLSLVSPAAS-------------------DSGKSDDEE-------------------- 172
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G S G H+R KR RT Q R K+ F ++ P K +
Sbjct: 173 ---SLCKSAHGAGKGASEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|293345851|ref|XP_001078699.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Rattus norvegicus]
gi|293357761|ref|XP_001069713.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Rattus norvegicus]
Length = 395
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD+
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDM 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ + GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPA-------KGQGSQNKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 250 ETLAAETGLSVRVVQ 264
>gi|170053181|ref|XP_001862556.1| insulin protein enhancer protein isl [Culex quinquefasciatus]
gi|167873811|gb|EDS37194.1| insulin protein enhancer protein isl [Culex quinquefasciatus]
Length = 438
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEILRHRDYCGS 61
S ++ VMRA+ ++H+ CF C C L GD F +RD +YC+ ++ L
Sbjct: 96 FSKNDFVMRAKSKIYHIECFRCSLCMKHLQPGDEFALRDGGALYCKEDHDHLE------- 148
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ Q + P P + + ++ S + N + + + E+ D
Sbjct: 149 -KTSQSLGPGVEPNNNVSNANANQNSSSNNNNNNNSSSNNNNNISLSNNNHSSELGSMSD 207
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S S G G + P G + R+RT QL+T+++ +N N PDA +
Sbjct: 208 SGSESGSHKSMRGKGPTGPSDG-----KPTRVRTVLNEKQLQTLRTCYNANPRPDALMKE 262
Query: 182 QLAQKTGLSKRVLQ 195
QL + TGLS RV++
Sbjct: 263 QLVEMTGLSPRVIR 276
>gi|147902022|ref|NP_001084038.1| LIM/homeobox protein Lhx5 [Xenopus laevis]
gi|1708831|sp|P37137.2|LHX5_XENLA RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5; Short=xLIM-5;
AltName: Full=xLIM-2A
gi|840658|gb|AAA99464.1| LIM class homeodomain protein [Xenopus laevis]
gi|54311470|gb|AAH84744.1| Lim5/Lhx5 protein [Xenopus laevis]
Length = 402
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 44/198 (22%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYC 59
+GIS S+LV +AR+ VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 LGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCK--------EDYI 120
Query: 60 GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHS 119
++ +++ + R LS D P I + E HS
Sbjct: 121 SASSLKES----------SLNSVSSCTDRSLSPDIQDP-----------IQDESKETDHS 159
Query: 120 GDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRM--RTSFKHHQLRTMKSYFNINQNPDA 177
SS E+ + E+ NS TKR RT+ K QL T+K+ F P
Sbjct: 160 --TSSDKETANNENEEQNSG----------TKRRGPRTTIKAKQLETLKAAFIATPKPTR 207
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 208 HIREQLAQETGLNMRVIQ 225
>gi|149038965|gb|EDL93185.1| LIM homeobox transcription factor 1 beta [Rattus norvegicus]
Length = 372
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSS- 155
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP +S + SED GD+
Sbjct: 156 -----VSPD---------------------ESDSVKSED----------------EDGDM 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ + GSG +R KR RT Q R K+ F ++ P K
Sbjct: 174 KPA-------KGQGSQNKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 226
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 227 ETLAAETGLSVRVVQ 241
>gi|348535371|ref|XP_003455174.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oreochromis niloticus]
Length = 396
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 81/194 (41%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS ++LV +AR VFHL+CFTC+ C L+ G E +Y + + DY S
Sbjct: 70 GISPNDLVRKARSKVFHLNCFTCMVCNKQLSTG-------EELYVIDENKFVCKDDYLSS 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
I+ + R LS D P +DI T S
Sbjct: 123 GAIK----------EVNLNSVSSCTDRSLSPDLQDPIQDDIK--------ETDNSTSSDK 164
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
++++E+ SGA P RT+ K QL T+K+ F P +
Sbjct: 165 ETNNIENEEQNSGAKRRGP-------------RTTIKAKQLETLKAAFVATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|547859|sp|Q04650.1|LMX1A_MESAU RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein LMX1A; Short=LIM/homeobox
protein 1; Short=LMX-1
gi|587461|emb|CAA57163.1| lmx1.1 [Mesocricetus auratus]
Length = 382
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G S G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGTSEDGK---DHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|395513919|ref|XP_003761169.1| PREDICTED: LIM/homeobox protein Lhx5 [Sarcophilus harrisii]
Length = 383
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 82 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCK--------EDYLN 133
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S +++ +V R LS D P +D P T S
Sbjct: 134 SPSVKE--------GSLNSVSSC--TDRSLSPDLQDPLQDD--------PKETDNSTSSD 175
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 176 KETTNNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 222
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 223 EQLAQETGLNMRVIQ 237
>gi|322787267|gb|EFZ13403.1| hypothetical protein SINV_03010 [Solenopsis invicta]
Length = 334
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L +R +YCR Y + G+ + S W
Sbjct: 78 TWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 132
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANV--------MRIPSTTLEMLHSGDLSSSME 127
V++ + R L+ + S ++ + + L+++ + SSS +
Sbjct: 133 ----VRRAKDRVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSSED 188
Query: 128 SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
S G G+ +TKR+RT+F QL +++ F ++ NPD +DL+++AQ T
Sbjct: 189 CDSEHGGKGS-----------KTKRVRTTFTEEQLAVLQANFQMDSNPDGQDLERIAQVT 237
Query: 188 GLSKRVLQ 195
GLSKRV Q
Sbjct: 238 GLSKRVTQ 245
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RA+D V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 127 VGAGDWVRRAKDRVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 174
>gi|18858909|ref|NP_571039.1| insulin gene enhancer protein isl-2b [Danio rerio]
gi|1708564|sp|P53407.1|ISL2B_DANRE RecName: Full=Insulin gene enhancer protein isl-2b; Short=Islet-2B;
AltName: Full=Insulin gene enhancer protein isl-3;
Short=Islet-3
gi|1037168|dbj|BAA07485.1| zfIsl-3 [Danio rerio]
gi|55962547|emb|CAI11499.1| islet 3 [Danio rerio]
gi|63100507|gb|AAH95011.1| Islet2b [Danio rerio]
Length = 358
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 79/195 (40%), Gaps = 52/195 (26%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +RDE + CR + + R G
Sbjct: 94 LGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSVRDEELLCRADHGLALERGPGG 153
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP G R L + + P + + H
Sbjct: 154 S-----PLSP------------GNIHTRGLHMAAD--------------PVSVRQTPHRN 182
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ E + R + + + H LRT +N N PDA
Sbjct: 183 HVHKQSEKTT------------------RVRTVLNEKQLHTLRTC---YNANPRPDALMK 221
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 222 EQLVEMTGLSPRVIR 236
>gi|334327218|ref|XP_001378455.2| PREDICTED: LIM/homeobox protein Lhx5-like [Monodelphis domestica]
Length = 303
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 81/194 (41%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV +AR VFHL+CFTC+ C L+ G+ + DE + + DY S
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYIIDENKF-------VCKEDYLNS 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
P+ + + R LS D P +D P T S
Sbjct: 123 ----------PSVKEGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSDK 164
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+++ E+ SG P RT+ K QL T+K+ F P +
Sbjct: 165 ETTNNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|52354701|gb|AAH82847.1| Unknown (protein for MGC:81549) [Xenopus laevis]
Length = 402
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 88/198 (44%), Gaps = 44/198 (22%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYC 59
+GIS S+LV +AR+ VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 LGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCK--------EDYT 120
Query: 60 GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHS 119
+ +++ + R LS D P I + E HS
Sbjct: 121 SVSSLKES----------SLNSVSSCTDRSLSPDLQDP-----------IKDESKETDHS 159
Query: 120 GDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRM--RTSFKHHQLRTMKSYFNINQNPDA 177
SS E+ + E+ NS TKR RT+ K QL T+K+ F P
Sbjct: 160 --TSSDKETTNNENEEQNSG----------TKRRGPRTTIKAKQLETLKAAFAATPKPTR 207
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 208 HIREQLAQETGLNMRVIQ 225
>gi|332220030|ref|XP_003259160.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Nomascus leucogenys]
Length = 368
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 76/195 (38%), Gaps = 55/195 (28%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP SG
Sbjct: 155 ----------------------------LSLVSPAASD-------------------SGK 167
Query: 122 LSSSMESLSYES-GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ESL + GAG + G H+R KR RT Q R K+ F ++ P K
Sbjct: 168 -SDDEESLCKSAHGAGKGTAEEG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 225
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 226 ETLAAETGLSVRVVQ 240
>gi|380013576|ref|XP_003690828.1| PREDICTED: LIM/homeobox protein Awh-like [Apis florea]
Length = 351
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L +R +YCR Y + G+ + S W
Sbjct: 95 TWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 149
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANV--------MRIPSTTLEMLHSGDLSSSME 127
V++ R R L+ + S ++ + + L+++ + SSS +
Sbjct: 150 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSSED 205
Query: 128 SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
S G G+ +TKR+RT+F QL +++ F ++ NPD +DL+++A T
Sbjct: 206 CDSEHGGKGS-----------KTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 254
Query: 188 GLSKRVLQ 195
GLSKRV Q
Sbjct: 255 GLSKRVTQ 262
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 144 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 191
>gi|309243111|ref|NP_001020338.2| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|48375211|gb|AAT42258.1| LIM homeodomain protein Lmx1b.1 [Danio rerio]
gi|190337176|gb|AAI62952.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|190338183|gb|AAI62932.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
Length = 375
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 80/193 (41%), Gaps = 52/193 (26%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL+CF C C L KGD F ++D + C+ YE R +D GS
Sbjct: 99 IAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKDGQLLCKSDYE--REKDLLGS- 155
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP DS + SED ++
Sbjct: 156 -----VSPD---------------------DSDSEKSEDEELDI---------------- 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
E G+G + G +R KR RT Q R K+ F ++ P K +
Sbjct: 174 -------KPEKGSGGTGKGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRET 226
Query: 183 LAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 LAAETGLSVRVVQ 239
>gi|62020648|gb|AAH20470.1| LHX1 protein, partial [Homo sapiens]
Length = 260
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 85/198 (42%), Gaps = 45/198 (22%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY +
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKF-------VCKEDYLSN 121
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI----NANVMRIPSTTLEML 117
+ + + S A TT LS DS P +D +ANV
Sbjct: 122 SSVAKENSLHSA----TTGSDP-----SLSPDSQDPSQDDAKDSESANV----------- 161
Query: 118 HSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
S + S E+ GA P RT+ K QL T+K+ F P
Sbjct: 162 -SDKEAGSNENDDQNLGAKRRGP-------------RTTIKAKQLETLKAAFAATPKPTR 207
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 208 HIREQLAQETGLNMRVIQ 225
>gi|344236825|gb|EGV92928.1| LIM homeobox transcription factor 1-alpha [Cricetulus griseus]
Length = 333
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 51 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 105
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 106 ----------------------------LSLVSPAASDSG-----------------KSD 120
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G S G H+R KR RT Q R K+ F ++ P K +
Sbjct: 121 DEESLCKSAHGAGKGASEDGK---DHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 177
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 178 TLAAETGLSVRVVQ 191
>gi|350404762|ref|XP_003487212.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus impatiens]
Length = 331
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L +R +YCR Y + G+ + S W
Sbjct: 75 TWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 129
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANV--------MRIPSTTLEMLHSGDLSSSME 127
V++ R R L+ + S ++ + + L+++ + SSS +
Sbjct: 130 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSSED 185
Query: 128 SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
S G G+ +TKR+RT+F QL +++ F ++ NPD +DL+++A T
Sbjct: 186 CDSEHGGKGS-----------KTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 234
Query: 188 GLSKRVLQ 195
GLSKRV Q
Sbjct: 235 GLSKRVTQ 242
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 124 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 171
>gi|312371799|gb|EFR19895.1| hypothetical protein AND_21633 [Anopheles darlingi]
Length = 284
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
IS+++ V RARDL+FHL CF C SCG L+ G+ F + D+ + C+ HY
Sbjct: 58 ISATDWVRRARDLIFHLACFACDSCGRQLSTGEQFALVDDKVLCKTHY 105
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 133 SGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 192
+ + + G + +TKR+RT+F QL+ +++ FNI+ NPD +DL+++A TGLSKR
Sbjct: 113 TSSDDGCEADGYQKNSKTKRVRTTFTEEQLQILQANFNIDSNPDGQDLERIASVTGLSKR 172
Query: 193 VLQ 195
V Q
Sbjct: 173 VTQ 175
>gi|62461837|gb|AAX83055.1| LIM homeodomain protein [Danio rerio]
Length = 375
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 80/193 (41%), Gaps = 52/193 (26%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL+CF C C L KGD F ++D + C+ YE R +D GS
Sbjct: 99 IAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKDGQLLCKSDYE--REKDLLGS- 155
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+SP DS + SED ++
Sbjct: 156 -----VSPD---------------------DSDSEKSEDEELDI---------------- 173
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
E G+G + G +R KR RT Q R K+ F ++ P K +
Sbjct: 174 -------KPEKGSGGTGKGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRET 226
Query: 183 LAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 LAAETGLSVRVVQ 239
>gi|328781528|ref|XP_001121397.2| PREDICTED: LIM/homeobox protein Awh [Apis mellifera]
Length = 352
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L +R +YCR Y + G+ + S W
Sbjct: 96 TWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 150
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANV--------MRIPSTTLEMLHSGDLSSSME 127
V++ R R L+ + S ++ + + L+++ + SSS +
Sbjct: 151 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSSED 206
Query: 128 SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
S G G+ +TKR+RT+F QL +++ F ++ NPD +DL+++A T
Sbjct: 207 CDSEHGGKGS-----------KTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 255
Query: 188 GLSKRVLQ 195
GLSKRV Q
Sbjct: 256 GLSKRVTQ 263
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 145 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 192
>gi|354486854|ref|XP_003505592.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Cricetulus griseus]
Length = 382
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G S G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGASEDGK---DHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|351694748|gb|EHA97666.1| LIM/homeobox protein Lhx5 [Heterocephalus glaber]
Length = 402
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------EDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|17298670|ref|NP_387501.1| LIM homeobox transcription factor 1-alpha [Mus musculus]
gi|27923804|sp|Q9JKU8.1|LMX1A_MOUSE RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|7230571|gb|AAF43012.1|AF226662_1 lim homeodomain-containing transcription factor [Mus musculus]
gi|26336939|dbj|BAC32153.1| unnamed protein product [Mus musculus]
gi|80477081|gb|AAI09168.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
gi|80478204|gb|AAI09169.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
Length = 382
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G S G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGASEDGK---DHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|340721085|ref|XP_003398956.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus terrestris]
Length = 329
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L +R +YCR Y + G+ + S W
Sbjct: 73 TWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 127
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANV--------MRIPSTTLEMLHSGDLSSSME 127
V++ R R L+ + S ++ + + L+++ + SSS +
Sbjct: 128 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSSED 183
Query: 128 SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
S G G+ +TKR+RT+F QL +++ F ++ NPD +DL+++A T
Sbjct: 184 CDSEHGGKGS-----------KTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 232
Query: 188 GLSKRVLQ 195
GLSKRV Q
Sbjct: 233 GLSKRVTQ 240
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 122 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 169
>gi|158187529|ref|NP_001099437.2| LIM homeobox transcription factor 1 alpha [Rattus norvegicus]
Length = 382
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G S G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGASEDGK---DHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|549846|gb|AAA21644.1| LIM domain transcription factor LIM-1 [Homo sapiens]
Length = 404
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 86/199 (43%), Gaps = 47/199 (23%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI----NANVMRIPSTTLEM 116
++ + + S A TT LS DS P +D +ANV
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAKDSESANV---------- 161
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
S + S E+ GA PG T+ K QL T+K+ F P
Sbjct: 162 --SDKEAGSNENDDQNLGAKRRGPG-------------TTIKAKQLETLKAAFAATPKPT 206
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 207 RHIREQLAQETGLNMRVIQ 225
>gi|432094974|gb|ELK26382.1| LIM/homeobox protein Lhx5 [Myotis davidii]
Length = 315
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 74 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKD--------DYLS 125
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 126 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 167
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 168 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 214
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 215 EQLAQETGLNMRVIQ 229
>gi|281343471|gb|EFB19055.1| hypothetical protein PANDA_014809 [Ailuropoda melanoleuca]
Length = 354
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV +AR VFHL+CFTC+ C L+ G E +Y + + DY S
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTG-------EELYVIDENKFVCKDDYLSS 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ ++ + + R LS D P +D P T S
Sbjct: 123 SSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSDK 164
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+++ E+ SG P RT+ K QL T+K+ F P +
Sbjct: 165 ETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|28893581|ref|NP_796372.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|291327513|ref|NP_001167540.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|109019319|ref|XP_001084612.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Macaca mulatta]
gi|109019321|ref|XP_001084727.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3
[Macaca mulatta]
gi|114561083|ref|XP_001174539.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
troglodytes]
gi|114561085|ref|XP_001174542.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3 [Pan
troglodytes]
gi|296229940|ref|XP_002760489.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Callithrix
jacchus]
gi|397508364|ref|XP_003824628.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1 [Pan
paniscus]
gi|397508366|ref|XP_003824629.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
paniscus]
gi|402858034|ref|XP_003893535.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Papio anubis]
gi|402858036|ref|XP_003893536.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Papio anubis]
gi|426332555|ref|XP_004027869.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Gorilla gorilla gorilla]
gi|426332557|ref|XP_004027870.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Gorilla gorilla gorilla]
gi|27923801|sp|Q8TE12.1|LMX1A_HUMAN RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|19879681|gb|AAL82892.1| LIM homeobox transcription factor 1 alpha [Homo sapiens]
gi|119611150|gb|EAW90744.1| LIM homeobox transcription factor 1, alpha, isoform CRA_b [Homo
sapiens]
gi|182887815|gb|AAI60062.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|193785405|dbj|BAG54558.1| unnamed protein product [Homo sapiens]
gi|208966672|dbj|BAG73350.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|355558990|gb|EHH15770.1| hypothetical protein EGK_01906 [Macaca mulatta]
gi|355746154|gb|EHH50779.1| hypothetical protein EGM_01656 [Macaca fascicularis]
Length = 382
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE---------- 149
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
++R+L + +P + D + D
Sbjct: 150 ------------------------KEREL-LSLVSPAASDSGKS---------------D 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGTAEEG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|383792181|ref|NP_001244317.1| LIM homeobox transcription factor 1-alpha [Gallus gallus]
Length = 380
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 54/193 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ SELVMRA+ V+HLHCF C C L KGD F +++ + C+ G
Sbjct: 101 IAPSELVMRAQQSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCK------------GDY 148
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
E E+ + LS+ SP + SG
Sbjct: 149 EKEREL---------------------LSLVSPA-------------------LSDSG-- 166
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
S E + G ++ H+R KR RT Q R K+ F ++ P K +
Sbjct: 167 KSDDEDSVCKMGPASAKGAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRET 226
Query: 183 LAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 LAAETGLSVRVVQ 239
>gi|301609265|ref|XP_002934210.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 380
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 74/193 (38%), Gaps = 56/193 (29%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ SE VMRA+ V+HL CF C C L KGD F ++D + C+ YE R RD
Sbjct: 101 ITPSEFVMRAQKNVYHLGCFCCCVCDRQLQKGDEFVLKDGQLLCKSDYE--RERDL---- 154
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
LS+ SP SG
Sbjct: 155 ---------------------------LSLVSPAASD-------------------SGKS 168
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
++ ++ G P G +R KR RT Q R K+ F ++ P K +
Sbjct: 169 EDEDDAGKFDDSKG---PEDG-KDQKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRET 224
Query: 183 LAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 225 LAAETGLSVRVVQ 237
>gi|383857875|ref|XP_003704429.1| PREDICTED: LIM/homeobox protein Awh-like [Megachile rotundata]
Length = 358
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L +R +YCR Y + G+ + S W
Sbjct: 102 TWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 156
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANV--------MRIPSTTLEMLHSGDLSSSME 127
V++ R R L+ + S ++ + + L+++ + SSS +
Sbjct: 157 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSSED 212
Query: 128 SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
S G G+ +TKR+RT+F QL +++ F ++ NPD +DL+++A T
Sbjct: 213 CDSEHGGKGS-----------KTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 261
Query: 188 GLSKRVLQ 195
GLSKRV Q
Sbjct: 262 GLSKRVTQ 269
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 151 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 198
>gi|258504172|gb|ACV72780.1| LIM-4 [Caenorhabditis remanei]
Length = 285
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD-YCGSAEIEQPMSPRPAPW 75
+H +CF C +C L+ + +D YC+ Y R C S E + W
Sbjct: 97 WHENCFQCTTCENPLSSKCFY--KDMKFYCKTCYFSCREFGPKCASCE----RLIQSTDW 150
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGA 135
V++ R L+ + N ++ + L G+L L G
Sbjct: 151 ----VRRARSYVYHLACFA-------CNQCKRQLSTGEEYALQEGNLLCKQHFLELVEG- 198
Query: 136 GNSSPGSGVHSHQ-RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
SGV S + +TKR+RT+F QL +++YFN + NPD DL+++A TGLSKRV
Sbjct: 199 -----DSGVSSQKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIATMTGLSKRVT 253
Query: 195 Q 195
Q
Sbjct: 254 Q 254
Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I S++ V RAR V+HL CF C C L+ G+ + +++ + C+ H+
Sbjct: 145 IQSTDWVRRARSYVYHLACFACNQCKRQLSTGEEYALQEGNLLCKQHF 192
>gi|170034024|ref|XP_001844875.1| arrowhead [Culex quinquefasciatus]
gi|167875283|gb|EDS38666.1| arrowhead [Culex quinquefasciatus]
Length = 257
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+ +H C C C L + +D +YC+ Y I +++ C
Sbjct: 20 IFEVSGCAWHGACLRCSVCYCPLERQVSCYFKDGEVYCKTDY-IKKYKAACTKC----SR 74
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S P+ W V++ R L+ S S ++ I L H +L +
Sbjct: 75 SISPSDW----VRRARDFVFHLACFSCDTCSRQLSTGEQFAIIDDRVLCKAHYMEL---I 127
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ + S G G+G +TKR+RT+F Q++ +++ F I+ NPD +DL+++A
Sbjct: 128 DDGTTSSEDGCDVDGTG---KNKTKRIRTTFTEEQIQILQANFQIDSNPDGQDLERIALA 184
Query: 187 TGLSKRVLQ 195
TGLSKRV Q
Sbjct: 185 TGLSKRVTQ 193
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
IS S+ V RARD VFHL CF+C +C L+ G+ F + D+ + C+ HY
Sbjct: 76 ISPSDWVRRARDFVFHLACFSCDTCSRQLSTGEQFAIIDDRVLCKAHY 123
>gi|195016322|ref|XP_001984389.1| GH16430 [Drosophila grimshawi]
gi|193897871|gb|EDV96737.1| GH16430 [Drosophila grimshawi]
Length = 239
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
IS+S+ V RARDLVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 40 ISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 87
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 133 SGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 192
+ + + G G H +TKR+RT+F QL+ +++ F I+ NPD +DL+++A TGLSKR
Sbjct: 96 TSSDDGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKR 154
Query: 193 VLQ 195
V Q
Sbjct: 155 VTQ 157
>gi|306020805|gb|ADM79456.1| islet [Cupiennius salei]
Length = 249
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 43/198 (21%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+ +S S+ VMRAR ++H+ CF CI+C L GD F ++++ + C+ ++C
Sbjct: 24 VSLSKSDFVMRARSQIYHIDCFRCIACARQLLPGDEFALKEDGLCCK--------SEHCT 75
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
A ++ + P P N TTL+M +
Sbjct: 76 LAITDKKPNGHPTP---------------------------NGHNGTTTNGTTLQMAGNP 108
Query: 121 DLSSSMESLSYESGAGNSSPGSGVH---SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
+ SM ++G S VH S + R+RT QL T+++ + N PDA
Sbjct: 109 ANAESM-----QTGRNRDSVRPQVHKQGSDHKPTRVRTVLNEKQLHTLRTCYAANPRPDA 163
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 164 LMKEQLVEMTGLSPRVIR 181
>gi|595301|gb|AAA80275.1| LIM domain homeobox protein, partial [Danio rerio]
Length = 167
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 79/195 (40%), Gaps = 52/195 (26%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +RDE + CR + + R G
Sbjct: 24 LGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSVRDEELLCRADHGLALERGPGG 83
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S P+SP G R L + + P + + H
Sbjct: 84 S-----PLSP------------GNIHTRGLHMAAD--------------PVSVRQTPHRN 112
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ E + R + + + H LRT +N N PDA
Sbjct: 113 HVHKQSEKTT------------------RVRTVLNEKQLHTLRTC---YNANPRPDALMK 151
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 152 EQLVEMTGLSPRVIR 166
>gi|403272543|ref|XP_003928115.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Saimiri boliviensis boliviensis]
gi|403272545|ref|XP_003928116.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Saimiri boliviensis boliviensis]
Length = 382
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGTAEEG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|363740116|ref|XP_001234553.2| PREDICTED: LIM/homeobox protein Lhx5 [Gallus gallus]
Length = 402
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 87/196 (44%), Gaps = 42/196 (21%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV +AR+ VFHL+CFTC+ C L+ G+ + DE + + DY S
Sbjct: 70 GISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKF-------VCKEDYLNS 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
++ + + R LS D P +D T E +S
Sbjct: 123 PSLK----------EGSLNSVSSCTDRSLSPDLQDPMQDD-----------TKETDNS-- 159
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRM--RTSFKHHQLRTMKSYFNINQNPDAKD 179
SS E+ + E+ NS TKR RT+ K QL T+K+ F P
Sbjct: 160 TSSDKETTNNENEEQNSG----------TKRRGPRTTIKAKQLETLKAAFAATPKPTRHI 209
Query: 180 LKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 210 REQLAQETGLNMRVIQ 225
>gi|326924822|ref|XP_003208624.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha-like [Meleagris gallopavo]
Length = 367
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 54/193 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ SELVMRA+ V+HLHCF C C L KGD F +++ + C+ G
Sbjct: 88 IAPSELVMRAQQSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCK------------GDY 135
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
E E+ + LS+ SP + SG
Sbjct: 136 EKEREL---------------------LSLVSPA-------------------LSDSG-- 153
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
S E + G ++ H+R KR RT Q R K+ F ++ P K +
Sbjct: 154 KSDDEDSVCKMGPASAKGAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRET 213
Query: 183 LAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 214 LAAETGLSVRVVQ 226
>gi|442630036|ref|NP_001261379.1| arrowhead, isoform C [Drosophila melanogaster]
gi|440215263|gb|AGB94074.1| arrowhead, isoform C [Drosophila melanogaster]
Length = 287
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RAR+LVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + +H HC C C L + +R+ +YC+ Y +++ G+
Sbjct: 16 SDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYS----KNF-GAKCS 70
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEM 116
+ + W V++ R L+ + ++ + + + LE
Sbjct: 71 KCCRGISASDW----VRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLET 126
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ G SS G G H +TKR+RT+F QL+ +++ F I+ NPD
Sbjct: 127 VEGGTTSSD-----------EGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPD 174
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++A TGLSKRV Q
Sbjct: 175 GQDLERIASVTGLSKRVTQ 193
>gi|195587560|ref|XP_002083529.1| GD13784 [Drosophila simulans]
gi|194195538|gb|EDX09114.1| GD13784 [Drosophila simulans]
Length = 278
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RAR+LVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 78 GISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 126
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 16/194 (8%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + +H HC C C L + +R+ +YC+ DY +
Sbjct: 16 SDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKA--------DYSKNFGA 67
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL---EMLHSGD 121
++ R + + R R+L + + L +L
Sbjct: 68 NDSIAARCC--RGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAH 125
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
++E + S G G G H +TKR+RT+F QL+ +++ F I+ NPD +DL+
Sbjct: 126 YLETVEGGTTSSDEG--CDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLE 182
Query: 182 QLAQKTGLSKRVLQ 195
++A TGLSKRV Q
Sbjct: 183 RIASVTGLSKRVTQ 196
>gi|30410785|ref|NP_005559.2| LIM/homeobox protein Lhx1 [Homo sapiens]
gi|60416412|sp|P48742.2|LHX1_HUMAN RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=hLim-1
gi|75517203|gb|AAI01675.1| LIM homeobox 1 [Homo sapiens]
gi|85565997|gb|AAI11937.1| LIM homeobox 1 [Homo sapiens]
gi|119577978|gb|EAW57574.1| LIM homeobox 1 [Homo sapiens]
gi|167773161|gb|ABZ92015.1| LIM homeobox 1 [synthetic construct]
gi|208966670|dbj|BAG73349.1| LIM homeobox 1 [synthetic construct]
Length = 406
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 86/199 (43%), Gaps = 47/199 (23%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI----NANVMRIPSTTLEM 116
++ + + S A TT LS DS P +D +ANV
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAKDSESANV---------- 161
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
S + S E+ GA P RT+ K QL T+K+ F P
Sbjct: 162 --SDKEAGSNENDDQNLGAKRRGP-------------RTTIKAKQLETLKAAFAATPKPT 206
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 207 RHIREQLAQETGLNMRVIQ 225
>gi|195440768|ref|XP_002068212.1| GK12807 [Drosophila willistoni]
gi|194164297|gb|EDW79198.1| GK12807 [Drosophila willistoni]
Length = 554
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHRDY 58
I+ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+ D+
Sbjct: 275 IAHDELVMRCHENVFHLKCFACVVCGSLLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDF 334
Query: 59 CGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
M R P +P T+ + R+ K S + P + N+ + +L ++
Sbjct: 335 YSDDIFPPKMDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKETGLSLRIV 394
Query: 118 H 118
Sbjct: 395 Q 395
>gi|440898273|gb|ELR49802.1| LIM/homeobox protein Lhx5, partial [Bos grunniens mutus]
Length = 376
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV +AR VFHL+CFTC+ C L+ G E +Y + + DY S
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTG-------EELYVIDENKFVCKDDYLSS 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ ++ + + R LS D P +D P T S
Sbjct: 123 SSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSDK 164
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+++ E+ SG P RT+ K QL T+K+ F P +
Sbjct: 165 ETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|299115104|dbj|BAJ09783.1| apterous 2 [Daphnia magna]
Length = 318
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+TKR+RTSFKHHQLR +KSYF N NPDAKDLKQ
Sbjct: 276 KTKRLRTSFKHHQLRMLKSYFATNHNPDAKDLKQ 309
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
+ ELVMR R+ +FH CF+C C L KG FGM +I+C+ HY+
Sbjct: 49 LQPDELVMRGREHLFHTRCFSCHICQTHLIKGSTFGMVGALIFCQQHYQ 97
>gi|391342699|ref|XP_003745653.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
occidentalis]
Length = 405
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 85/201 (42%), Gaps = 52/201 (25%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS ++LV RAR VFHL CFTC+ C L+ G +L+ + + C+ Y R ++
Sbjct: 71 GISPTDLVRRARSKVFHLKCFTCLVCRKQLSTGEELYVLDENRFICKEDYLNQRQQE--- 127
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSV-----DSPTPPSEDINANVMRIPSTTLE 115
K L++ D+ PP+ I L
Sbjct: 128 --------------------------KNSLNIISRCNDAGLPPN---------IEDPALP 152
Query: 116 MLHSGDLSSSMESLSYESGAGNS-SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQN 174
L D S ESG N+ GSG Q+ + RT+ K QL T+K+ F
Sbjct: 153 GLKRPDSGGS----GPESGQANAPDDGSG---GQKRRGPRTTIKAKQLETLKAAFAATPK 205
Query: 175 PDAKDLKQLAQKTGLSKRVLQ 195
P +QLAQ+TGL+ RV+Q
Sbjct: 206 PTRHIREQLAQETGLNMRVIQ 226
>gi|328793255|ref|XP_003251852.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Apis
mellifera]
Length = 418
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 86/200 (43%), Gaps = 41/200 (20%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
S + VMRAR ++H+ CF C +C L GD F +R + ++CR +++L C
Sbjct: 82 FSKDDYVMRARSKIYHIKCFRCSACMRQLVPGDEFALRQDGLFCRHDHDVLEGGKLCSG- 140
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
P V P SE+ N + LH D
Sbjct: 141 --------------PGGV----------------PGSENNNNASL---MNNNHHLHPNDG 167
Query: 123 S---SSMESLSYESGAGNS----SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
S S ES S+++G G + S SG S + R+RT QL T+++ + N P
Sbjct: 168 SISDSGSESGSHKAGMGGTRGSGSHKSGGGSDGKPTRVRTVLNEKQLHTLRTCYAANPRP 227
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DA +QL + TGLS RV++
Sbjct: 228 DALMKEQLVEMTGLSPRVIR 247
>gi|312370935|gb|EFR19233.1| hypothetical protein AND_22857 [Anopheles darlingi]
Length = 411
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 78/193 (40%), Gaps = 36/193 (18%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ SELVMRA+ LV+HLHCF C +C L KG+ F +R + C+ E +D+ G+A
Sbjct: 79 IAPSELVMRAKHLVYHLHCFLCYTCNRPLQKGEPFSIRAGKLVCQHDLE----KDFYGAA 134
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+ Q A G A + P + M D
Sbjct: 135 AMHQHHHGAGAGATGGVTSAG-------------------GAGGLHPPLHPVHMYGEDDY 175
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ + G P KR RT Q R K+ F+++ P K +
Sbjct: 176 ---LLEDGLRTRDGRRGP----------KRPRTILTSAQRRQFKASFDVSPKPCRKVREA 222
Query: 183 LAQKTGLSKRVLQ 195
LA+ TGLS RV+Q
Sbjct: 223 LAKDTGLSVRVVQ 235
>gi|307182932|gb|EFN69942.1| LIM/homeobox protein Awh [Camponotus floridanus]
Length = 458
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L +R +YCR Y + G+ + S W
Sbjct: 203 TWHSRCLKCYACARPLHDQHSCFLRGMRLYCRHDYALTF-----GAKCAKCGRSMGAGDW 257
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANV--------MRIPSTTLEMLHSGDLSSSME 127
V++ + R L+ + S ++ + + L+++ + SSS +
Sbjct: 258 ----VRRAKDRVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSSED 313
Query: 128 SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
S G G+ +TKR+RT+F QL +++ F ++ NPD +DL+++AQ T
Sbjct: 314 CDSEHGGKGS-----------KTKRVRTTFTEEQLAVLQANFQMDSNPDGQDLERIAQVT 362
Query: 188 GLSKRVLQ 195
GLSKRV Q
Sbjct: 363 GLSKRVTQ 370
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RA+D V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 252 MGAGDWVRRAKDRVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 299
>gi|311270693|ref|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like [Sus
scrofa]
Length = 402
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|17945534|gb|AAL48819.1| RE24382p [Drosophila melanogaster]
Length = 275
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RAR+LVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + +H HC C C L + +R+ +YC+ Y +++ G+
Sbjct: 16 SDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYS----KNF-GAKCS 70
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEM 116
+ + W V++ R L+ + ++ + + + LE
Sbjct: 71 KCCRGISASDW----VRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLET 126
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ G SS G G H +TKR+RT+F QL+ +++ F I+ NPD
Sbjct: 127 VEGGTTSSD-----------EGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPD 174
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++A TGLSKRV Q
Sbjct: 175 DQDLERIASVTGLSKRVTQ 193
>gi|258504160|gb|ACV72774.1| LIM-4 [Caenorhabditis remanei]
gi|258504162|gb|ACV72775.1| LIM-4 [Caenorhabditis remanei]
gi|258504164|gb|ACV72776.1| LIM-4 [Caenorhabditis remanei]
gi|258504184|gb|ACV72786.1| LIM-4 [Caenorhabditis remanei]
gi|258504186|gb|ACV72787.1| LIM-4 [Caenorhabditis remanei]
Length = 285
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD-YCGSAEIEQPMSPRPAPW 75
+H +CF C +C L+ + +D YC+ Y R C S E + W
Sbjct: 97 WHENCFQCTTCENPLSSKCFY--KDMKFYCKTCYFSCREFGPKCASCE----RLIQSTDW 150
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGA 135
V++ R L+ + N ++ + L G+L L G
Sbjct: 151 ----VRRARNYVYHLACFA-------CNQCKRQLSTGEEYALQEGNLLCKQHFLELVEG- 198
Query: 136 GNSSPGSGVHSHQ-RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
SGV S + +TKR+RT+F QL +++YFN + NPD DL+++A TGLSKRV
Sbjct: 199 -----DSGVSSQKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIATMTGLSKRVT 253
Query: 195 Q 195
Q
Sbjct: 254 Q 254
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I S++ V RAR+ V+HL CF C C L+ G+ + +++ + C+ H+
Sbjct: 145 IQSTDWVRRARNYVYHLACFACNQCKRQLSTGEEYALQEGNLLCKQHF 192
>gi|395833990|ref|XP_003790000.1| PREDICTED: LIM/homeobox protein Lhx5 [Otolemur garnettii]
Length = 402
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|444730493|gb|ELW70875.1| LIM/homeobox protein Lhx4 [Tupaia chinensis]
Length = 768
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 31/216 (14%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD--- 57
GI +++V +A+D V+HLHCF C+ C L GD F M D + C+ YE + D
Sbjct: 374 GIPPTQVVRKAQDFVYHLHCFACVICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDWAV 433
Query: 58 ---------YCGSA-------EIEQPMSPRPAPWQPTTVQK--GRPRKRKLSVDSPTPPS 99
+C S E E P++ + QP G + + + +
Sbjct: 434 EGRGWGADSWCWSCSGCRLRDEEEGPLATQGDSAQPCNFSGPPGPYSRLQWELCTGQAGI 493
Query: 100 EDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKH 159
+ ++ R P+ L M + S + L A + S KR RT+
Sbjct: 494 RPVFSSRTRNPAGPLSM--PVEQPCSFQRLDGAQQAQDDSEAG-------AKRPRTTITA 544
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
QL T+K+ + + P +QL+ +TGL RV+Q
Sbjct: 545 KQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 580
>gi|258504166|gb|ACV72777.1| LIM-4 [Caenorhabditis remanei]
gi|258504168|gb|ACV72778.1| LIM-4 [Caenorhabditis remanei]
gi|258504170|gb|ACV72779.1| LIM-4 [Caenorhabditis remanei]
gi|258504174|gb|ACV72781.1| LIM-4 [Caenorhabditis remanei]
gi|258504176|gb|ACV72782.1| LIM-4 [Caenorhabditis remanei]
gi|258504178|gb|ACV72783.1| LIM-4 [Caenorhabditis remanei]
gi|258504180|gb|ACV72784.1| LIM-4 [Caenorhabditis remanei]
gi|258504182|gb|ACV72785.1| LIM-4 [Caenorhabditis remanei]
gi|258504188|gb|ACV72788.1| LIM-4 [Caenorhabditis remanei]
gi|258504190|gb|ACV72789.1| LIM-4 [Caenorhabditis remanei]
Length = 285
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD-YCGSAEIEQPMSPRPAPW 75
+H +CF C +C L+ + +D YC+ Y R C S E + W
Sbjct: 97 WHENCFQCTTCENPLSSKCFY--KDMKFYCKTCYFSCREFGPKCASCE----RLIQSTDW 150
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESGA 135
V++ R L+ + N ++ + L G+L L G
Sbjct: 151 ----VRRARNYVYHLACFA-------CNQCKRQLSTGEEYALQEGNLLCKQHFLELVEG- 198
Query: 136 GNSSPGSGVHSHQ-RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
SGV S + +TKR+RT+F QL +++YFN + NPD DL+++A TGLSKRV
Sbjct: 199 -----DSGVSSQKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIATMTGLSKRVT 253
Query: 195 Q 195
Q
Sbjct: 254 Q 254
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I S++ V RAR+ V+HL CF C C L+ G+ + +++ + C+ H+
Sbjct: 145 IQSTDWVRRARNYVYHLACFACNQCKRQLSTGEEYALQEGNLLCKQHF 192
>gi|195337236|ref|XP_002035235.1| GM14592 [Drosophila sechellia]
gi|194128328|gb|EDW50371.1| GM14592 [Drosophila sechellia]
Length = 275
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RAR+LVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + +H HC C C L + +R+ +YC+ Y +++ G+
Sbjct: 16 SDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYS----KNF-GAKCS 70
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEM 116
+ + W V++ R L+ + ++ + + + LE
Sbjct: 71 KCCRGISASDW----VRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLET 126
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ G SS G G H +TKR+RT+F QL+ +++ F I+ NPD
Sbjct: 127 VEGGTTSSD-----------EGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPD 174
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++A TGLSKRV Q
Sbjct: 175 GQDLERIASVTGLSKRVTQ 193
>gi|156120769|ref|NP_001095531.1| LIM/homeobox protein Lhx5 [Bos taurus]
gi|151557071|gb|AAI50044.1| LHX5 protein [Bos taurus]
gi|296478515|tpg|DAA20630.1| TPA: LIM homeobox protein 5 [Bos taurus]
Length = 402
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|338727662|ref|XP_001915147.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
[Equus caballus]
Length = 403
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV +AR VFHL+CFTC+ C L+ G E +Y + + DY S
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTG-------EELYVIDENKFVCKDDYLSS 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ ++ + + R LS D P +D P T S
Sbjct: 123 SSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSDK 164
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+++ E+ SG P RT+ K QL T+K+ F P +
Sbjct: 165 ETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|296194639|ref|XP_002745038.1| PREDICTED: insulin gene enhancer protein ISL-1 [Callithrix jacchus]
Length = 348
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 59/198 (29%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++ GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVA-AAPAHPGDEFALREDGLFCRADHDVV-ERASLG 141
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ + P+SP + RP
Sbjct: 142 AGD---PLSP---------LHPARP----------------------------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
L + E +S P H H ++T R+RT QL T+++ + N PDA
Sbjct: 155 -LQMAAEPISAR------QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 207
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 208 LMKEQLVEMTGLSPRVIR 225
>gi|24656992|ref|NP_728906.1| arrowhead, isoform B [Drosophila melanogaster]
gi|194866170|ref|XP_001971791.1| GG15164 [Drosophila erecta]
gi|195491511|ref|XP_002093592.1| GE21383 [Drosophila yakuba]
gi|62510367|sp|Q8IRC7.1|AWH_DROME RecName: Full=LIM/homeobox protein Awh; AltName: Full=Protein
arrowhead
gi|23092944|gb|AAN11572.1| arrowhead, isoform B [Drosophila melanogaster]
gi|94400621|gb|ABF17921.1| FI01007p [Drosophila melanogaster]
gi|190653574|gb|EDV50817.1| GG15164 [Drosophila erecta]
gi|194179693|gb|EDW93304.1| GE21383 [Drosophila yakuba]
Length = 275
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RAR+LVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + +H HC C C L + +R+ +YC+ Y +++ G+
Sbjct: 16 SDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYS----KNF-GAKCS 70
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEM 116
+ + W V++ R L+ + ++ + + + LE
Sbjct: 71 KCCRGISASDW----VRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLET 126
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ G SS G G H +TKR+RT+F QL+ +++ F I+ NPD
Sbjct: 127 VEGGTTSSD-----------EGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPD 174
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++A TGLSKRV Q
Sbjct: 175 GQDLERIASVTGLSKRVTQ 193
>gi|344295258|ref|XP_003419329.1| PREDICTED: LIM/homeobox protein Lhx5-like [Loxodonta africana]
Length = 402
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|291407015|ref|XP_002719805.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 402
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KEAANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|242007294|ref|XP_002424476.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
gi|212507894|gb|EEB11738.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
Length = 389
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
ELVMRA+ LVFHL CF CI+CG L KG+ F ++ ++CRP +E
Sbjct: 99 ELVMRAQHLVFHLQCFCCIACGQHLQKGEQFVLKAGQLFCRPDFE 143
>gi|431914229|gb|ELK15487.1| LIM/homeobox protein Lhx5 [Pteropus alecto]
Length = 402
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|380018327|ref|XP_003693083.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Apis florea]
Length = 419
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 86/200 (43%), Gaps = 41/200 (20%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
S + VMRAR ++H+ CF C +C L GD F +R + ++CR +++L C
Sbjct: 83 FSKDDYVMRARSKIYHIKCFRCSACMRQLVPGDEFALRQDGLFCRHDHDVLEGGKLCSG- 141
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
P V P SE+ N + LH D
Sbjct: 142 --------------PGGV----------------PGSENNNNASL---MNNNHHLHPNDG 168
Query: 123 S---SSMESLSYESGAGNS----SPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNP 175
S S ES S+++G G + S SG S + R+RT QL T+++ + N P
Sbjct: 169 SISDSGSESGSHKAGMGGTRGSGSHKSGGGSDGKPTRVRTVLNEKQLHTLRTCYAANPRP 228
Query: 176 DAKDLKQLAQKTGLSKRVLQ 195
DA +QL + TGLS RV++
Sbjct: 229 DALMKEQLVEMTGLSPRVIR 248
>gi|270002858|gb|EEZ99305.1| LIM homeobox transcription factor 1, beta 2 [Tribolium castaneum]
Length = 353
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ ELVMRA + +FHL CF C+ CGI L KGDL+ ++ ++CR YE
Sbjct: 65 IAPEELVMRASENIFHLRCFVCVVCGIRLQKGDLYVIKQGQLFCRIDYE 113
>gi|380013153|ref|XP_003690632.1| PREDICTED: LIM/homeobox protein Awh-like [Apis florea]
Length = 332
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L ++ +YCR Y + G+ + S W
Sbjct: 61 TWHSRCLRCFACARPLHDQHSCFLKGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 115
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSMESLSYES 133
V++ R R L+ + S ++ + + L H D+ + S E
Sbjct: 116 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSDEG 171
Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G S SG + KR+RT+F QL +++ F ++ NPD +DL+++A TGLSKRV
Sbjct: 172 GDSESGHKSG----NKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRV 227
Query: 194 LQ 195
Q
Sbjct: 228 TQ 229
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 110 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 157
>gi|326931564|ref|XP_003211898.1| PREDICTED: LIM/homeobox protein Lhx1-like [Meleagris gallopavo]
Length = 222
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 83/198 (41%), Gaps = 45/198 (22%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV RAR VFHL+CFTC+ C L+ G E +Y + + DY +
Sbjct: 16 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTG-------EELYIIDENKFVCKEDYLNN 68
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI----NANVMRIPSTTLEML 117
+ + S A TT LS DS P +D +ANV
Sbjct: 69 SNTAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAKDSESANV----------- 108
Query: 118 HSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
S + S E+ GA P RT+ K QL T+K+ F P
Sbjct: 109 -SDKETGSNENDDQNLGAKRRGP-------------RTTIKAKQLETLKAAFAATPKPTR 154
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 155 HIREQLAQETGLNMRVIQ 172
>gi|345790894|ref|XP_543409.3| PREDICTED: LIM/homeobox protein Lhx5 [Canis lupus familiaris]
Length = 402
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|442630038|ref|NP_001261380.1| arrowhead, isoform D [Drosophila melanogaster]
gi|440215264|gb|AGB94075.1| arrowhead, isoform D [Drosophila melanogaster]
Length = 271
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RAR+LVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 29/199 (14%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + +H HC C C L + +R+ +YC+ Y +++ G+
Sbjct: 16 SDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYS----KNF-GAKCS 70
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEM 116
+ + W V++ R L+ + ++ + + + LE
Sbjct: 71 KCCRGISASDW----VRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLET 126
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
+ G SS G G H +TKR+RT+F QL+ +++ F I+ NPD
Sbjct: 127 VEGGTTSSD-----------EGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPD 174
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+DL+++A TGLSKRV Q
Sbjct: 175 GQDLERIASVTGLSKRVTQ 193
>gi|402592128|gb|EJW86057.1| hypothetical protein WUBG_03029, partial [Wuchereria bancrofti]
Length = 218
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE-ILRHRDYC 59
+ + S++ V R ++HLHCF C CG L KGD + + D I CRP YE +L C
Sbjct: 11 LPVRSTDYVYRVFASIYHLHCFKCFCCGHLFKKGDHYVLVDGQIICRPDYEHLLCQPPIC 70
Query: 60 GS-AEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
S +Q S R P +P T+ + RK KL+ + + P + + + + ++ ++
Sbjct: 71 QSHLYFDQNDSNRKTPKRPRTILNTQQRKAFKLAFEKTSKPCRKVREQLAKETNLSVRVV 130
Query: 118 H 118
Sbjct: 131 Q 131
>gi|328723694|ref|XP_001946328.2| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Acyrthosiphon pisum]
Length = 415
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I++ ELVMRA + VFH CF C+ CGI L GD + ++ ++CRP YE
Sbjct: 105 IAAGELVMRAGECVFHEQCFVCVVCGIRLCTGDQYVIKHSQLFCRPDYE 153
>gi|189234898|ref|XP_967153.2| PREDICTED: similar to lim homeobox protein, partial [Tribolium
castaneum]
Length = 368
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ ELVMRA + +FHL CF C+ CGI L KGDL+ ++ ++CR YE
Sbjct: 69 IAPEELVMRASENIFHLRCFVCVVCGIRLQKGDLYVIKQGQLFCRIDYE 117
>gi|2435404|gb|AAB71337.1| arrowhead [Drosophila melanogaster]
Length = 214
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RAR+LVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 29/187 (15%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPWQ 76
+H HC C C L + +R+ +YC+ Y +++ G+ + + W
Sbjct: 28 WHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYS----KNF-GAKCSKSCRGISASDW- 81
Query: 77 PTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEMLHSGDLSSSMES 128
V++ R L+ + ++ + + + LE + G SS
Sbjct: 82 ---VRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEGGTTSSD--- 135
Query: 129 LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 188
G G H +TKR+RT+F QL+ +++ F I+ NPD +DL+++A TG
Sbjct: 136 --------EGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTG 186
Query: 189 LSKRVLQ 195
LSKRV +
Sbjct: 187 LSKRVTE 193
>gi|6678690|ref|NP_032525.1| LIM/homeobox protein Lhx5 [Mus musculus]
gi|20514764|ref|NP_620605.1| LIM/homeobox protein Lhx5 [Rattus norvegicus]
gi|47606426|sp|P61376.1|LHX5_RAT RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-2
gi|47606427|sp|P61375.1|LHX5_MOUSE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|531220|gb|AAA62162.1| amino acid feature: homeodomain, bp 895 .. 1074; amino acid
feature: LIM1, bp 373 .. 516; amino acid feature: LIM2,
bp 550 .. 705 [Rattus norvegicus]
gi|1388183|gb|AAC52842.1| LIM/homeodomain [Mus musculus]
gi|26329557|dbj|BAC28517.1| unnamed protein product [Mus musculus]
gi|26339568|dbj|BAC33455.1| unnamed protein product [Mus musculus]
gi|34784227|gb|AAH57585.1| LIM homeobox protein 5 [Mus musculus]
gi|74148661|dbj|BAE24281.1| unnamed protein product [Mus musculus]
gi|148687827|gb|EDL19774.1| LIM homeobox protein 5 [Mus musculus]
gi|149063463|gb|EDM13786.1| LIM homeobox protein 5 [Rattus norvegicus]
Length = 402
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|410976694|ref|XP_003994749.1| PREDICTED: LIM/homeobox protein Lhx5 [Felis catus]
Length = 332
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV +AR VFHL+CFTC+ C L+ G E +Y + + DY S
Sbjct: 70 GISPSDLVRKARGKVFHLNCFTCMVCNKQLSTG-------EELYVIDENKFVCKDDYLSS 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ ++ + + R LS D P +D P T S
Sbjct: 123 SSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSDK 164
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+++ E+ SG P RT+ K QL T+K+ F P +
Sbjct: 165 ETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|395825137|ref|XP_003785798.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Otolemur
garnettii]
Length = 382
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGAAEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|345797790|ref|XP_851352.2| PREDICTED: LIM homeobox transcription factor 1-alpha [Canis lupus
familiaris]
Length = 382
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGAAEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|322787264|gb|EFZ13400.1| hypothetical protein SINV_02203 [Solenopsis invicta]
Length = 333
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 15/182 (8%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L +R +YCR Y + G+ + S W
Sbjct: 63 TWHSRCLRCCACARPLHDQHSCFLRGMRVYCRHDYALAF-----GAKCAKCGRSVGAGDW 117
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSMESLSYES 133
V++ R R L+ + S ++ + + L H D+ + S E
Sbjct: 118 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSDEG 173
Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G S G + KR+RT+F QL +++ F ++ NPD +DL+++A TGLSKRV
Sbjct: 174 GDSESGHKGG----NKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRV 229
Query: 194 LQ 195
Q
Sbjct: 230 TQ 231
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 112 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 159
>gi|354497499|ref|XP_003510857.1| PREDICTED: LIM/homeobox protein Lhx5-like [Cricetulus griseus]
gi|344257745|gb|EGW13849.1| LIM/homeobox protein Lhx5 [Cricetulus griseus]
Length = 402
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S+ ++ + + R LS D P +D P T S
Sbjct: 122 SSSLK----------EGSLNSVSSCTDRSLSPDLQDPLQDD--------PKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|24656997|ref|NP_523907.2| arrowhead, isoform A [Drosophila melanogaster]
gi|23092945|gb|AAF47800.2| arrowhead, isoform A [Drosophila melanogaster]
Length = 214
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 29/187 (15%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPWQ 76
+H HC C C L + +R+ +YC+ Y +++ G+ + + W
Sbjct: 28 WHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYS----KNF-GAKCSKCCRGISASDW- 81
Query: 77 PTTVQKGRPRKRKLSVDSPTPPSEDINA--------NVMRIPSTTLEMLHSGDLSSSMES 128
V++ R L+ + ++ + + + LE + G SS
Sbjct: 82 ---VRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEGGTTSSD--- 135
Query: 129 LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 188
G G H +TKR+RT+F QL+ +++ F I+ NPD +DL+++A TG
Sbjct: 136 --------EGCDGDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTG 186
Query: 189 LSKRVLQ 195
LSKRV Q
Sbjct: 187 LSKRVTQ 193
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RAR+LVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
>gi|291397514|ref|XP_002715925.1| PREDICTED: LIM homeobox transcription factor 1 alpha-like
[Oryctolagus cuniculus]
Length = 382
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGTGKGAAEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|149755774|ref|XP_001493379.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Equus
caballus]
Length = 382
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE---------- 149
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
++R+L + +P + D + D
Sbjct: 150 ------------------------KEREL-LSLVSPAASDSGKS---------------D 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGTGKGAAEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|383857877|ref|XP_003704430.1| PREDICTED: LIM/homeobox protein Awh-like [Megachile rotundata]
Length = 371
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L ++ +YCR Y + G+ + S W
Sbjct: 101 TWHSRCLRCFACARPLHDQHSCFLKGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 155
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSMESLSYES 133
V++ R R L+ + S ++ + + L H D+ + S E
Sbjct: 156 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSDEG 211
Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G S SG + KR+RT+F QL +++ F ++ NPD +DL+++A TGLSKRV
Sbjct: 212 GDSESGHKSG----NKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRV 267
Query: 194 LQ 195
Q
Sbjct: 268 TQ 269
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 150 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 197
>gi|281348858|gb|EFB24442.1| hypothetical protein PANDA_002084 [Ailuropoda melanoleuca]
Length = 368
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
++ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 86 AVAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 140
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 141 ----------------------------LSLVSPAASDSG-----------------KSD 155
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 156 DEESLCKSAHGAGKGATEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 212
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 213 TLAAETGLSVRVVQ 226
>gi|328781496|ref|XP_001121365.2| PREDICTED: LIM/homeobox protein Awh-like [Apis mellifera]
Length = 332
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L ++ +YCR Y + G+ + S W
Sbjct: 61 TWHSRCLRCFACARPLHDQHSCFLKGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 115
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSMESLSYES 133
V++ R R L+ + S ++ + + L H D+ + S E
Sbjct: 116 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSDEG 171
Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G S SG + KR+RT+F QL +++ F ++ NPD +DL+++A TGLSKRV
Sbjct: 172 GDSESGHKSG----NKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRV 227
Query: 194 LQ 195
Q
Sbjct: 228 TQ 229
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 110 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 157
>gi|47228451|emb|CAG05271.1| unnamed protein product [Tetraodon nigroviridis]
Length = 579
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS ++LV +AR VFHL+CFTC+ C L+ G E +Y + + D+ S
Sbjct: 229 GISPNDLVRKARSKVFHLNCFTCMVCNKQLSTG-------EELYVIDENKFVCKEDFLSS 281
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
I+ + R LS D P +DI T S
Sbjct: 282 GAIK----------EANLNSVSSCTDRSLSPDLQDPTQDDIK--------ETDNSTSSDK 323
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
++++E+ SG P RT+ K QL T+K+ F P +
Sbjct: 324 ETNNIENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFVATPKPTRHIRE 370
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 371 QLAQETGLNMRVIQ 384
>gi|17568917|ref|NP_508669.1| Protein LIM-4 [Caenorhabditis elegans]
gi|1621631|gb|AAB17273.1| putative transcription factor LIM-4 [Caenorhabditis elegans]
gi|351063300|emb|CCD71434.1| Protein LIM-4 [Caenorhabditis elegans]
Length = 355
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 142 SGVHSHQ-RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SGV S + +TKR+RT+F QL +++YFN + NPD DL+++A TGLSKRV Q
Sbjct: 230 SGVSSQKAKTKRVRTTFAEDQLSVLQTYFNRDSNPDGADLEKIASMTGLSKRVTQ 284
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD 57
I +++ V RAR+ V+HL CF+C C L+ G+ + +++ + C+ H+ L D
Sbjct: 175 IQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHFLELVEGD 229
>gi|355786560|gb|EHH66743.1| hypothetical protein EGM_03791, partial [Macaca fascicularis]
Length = 306
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ Y
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY---------- 119
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+++++G D P D+ + P T S
Sbjct: 120 --------------LSSSSLKEGSLNSVSSCTDRSLSP--DLQDALQDDPKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|355564712|gb|EHH21212.1| hypothetical protein EGK_04224, partial [Macaca mulatta]
Length = 293
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ Y
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY---------- 119
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+++++G D P D+ + P T S
Sbjct: 120 --------------LSSSSLKEGSLNSVSSCTDRSLSP--DLQDALQDDPKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|190361014|gb|ACE76893.1| Lim1, partial [Emys orbicularis]
Length = 261
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 83/194 (42%), Gaps = 37/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S LV RAR VFHL+CFTC+ C L+ G E +Y + + DY +
Sbjct: 35 GISPSNLVRRARSKVFHLNCFTCMMCNKQLSTG-------EELYIIDENKFVCKEDYLNN 87
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ + S A TT LS DS P +D + S + +G+
Sbjct: 88 SNTAKENSLHSA----TTGSDP-----SLSPDSQDPSQDDAKDS----ESANVSDKEAGN 134
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ ++L GA P RT+ K QL T+K+ F P +
Sbjct: 135 NENDDQNL----GAKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIRE 177
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 178 QLAQETGLNMRVIQ 191
>gi|403281850|ref|XP_003932386.1| PREDICTED: LIM/homeobox protein Lhx5 [Saimiri boliviensis
boliviensis]
Length = 385
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S +++++G D P D+ + P T S
Sbjct: 122 S----------------SSLKEGSLNSVSSCTDRSLSP--DLQDALQDDPKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|109098848|ref|XP_001111705.1| PREDICTED: LIM/homeobox protein Lhx5-like [Macaca mulatta]
gi|296213013|ref|XP_002753087.1| PREDICTED: LIM/homeobox protein Lhx5 [Callithrix jacchus]
gi|297693055|ref|XP_002823842.1| PREDICTED: LIM/homeobox protein Lhx5 [Pongo abelii]
gi|402887767|ref|XP_003907254.1| PREDICTED: LIM/homeobox protein Lhx5 [Papio anubis]
Length = 402
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S +++++G D P D+ + P T S
Sbjct: 122 S----------------SSLKEGSLNSVSSCTDRSLSP--DLQDALQDDPKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|11641283|ref|NP_071758.1| LIM/homeobox protein Lhx5 [Homo sapiens]
gi|332840493|ref|XP_001153819.2| PREDICTED: LIM/homeobox protein Lhx5 [Pan troglodytes]
gi|397525022|ref|XP_003832477.1| PREDICTED: LIM/homeobox protein Lhx5 [Pan paniscus]
gi|426374256|ref|XP_004053995.1| PREDICTED: LIM/homeobox protein Lhx5 [Gorilla gorilla gorilla]
gi|18202938|sp|Q9H2C1.1|LHX5_HUMAN RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|11527289|gb|AAG36963.1|AF291181_1 LHX5 protein [Homo sapiens]
gi|80475867|gb|AAI09231.1| LIM homeobox 5 [Homo sapiens]
gi|119618466|gb|EAW98060.1| LIM homeobox 5 [Homo sapiens]
gi|261861188|dbj|BAI47116.1| LIM homeobox 5 [synthetic construct]
Length = 402
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV +AR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------DDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S +++++G D P D+ + P T S
Sbjct: 122 S----------------SSLKEGSLNSVSSCTDRSLSP--DLQDALQDDPKETDNSTSSD 163
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+++ E+ SG P RT+ K QL T+K+ F P
Sbjct: 164 KETANNENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIR 210
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 EQLAQETGLNMRVIQ 225
>gi|393908929|gb|EJD75252.1| transcription factor protein [Loa loa]
Length = 594
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 30/194 (15%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRD--EMIYCRPHYEILRHRDYCG 60
IS +++VM+ R L +H CF+C +C LT G+ F +R+ + I CR C
Sbjct: 263 ISKTDMVMKIRTLTYHATCFSCSNCDKKLTIGEEFVLREREDDILCRAD---------CD 313
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ IEQP S + + R+ + D T S ++ + P +L+ S
Sbjct: 314 TNNIEQPSSIKTDIYG---------REEEDGWDGSTLTS--LDNQMSSTPPLSLQSPKSD 362
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
++ ++ + + S +++ R+RT QL T+K+ + N PDA
Sbjct: 363 EIVTTFNT--------SKSQIKKNKKDKQSTRVRTVLNEKQLMTLKACYAANARPDAMMK 414
Query: 181 KQLAQKTGLSKRVL 194
+ L + TGLS RV+
Sbjct: 415 EHLVEMTGLSPRVI 428
>gi|340721611|ref|XP_003399211.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus terrestris]
gi|350404711|ref|XP_003487194.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus impatiens]
Length = 334
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L ++ +YCR Y + G+ + S W
Sbjct: 63 TWHSRCLRCCACARPLHDQHSCFLKGMRLYCRHDYALTF-----GAKCAKCGRSVGAGDW 117
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSMESLSYES 133
V++ R R L+ + S ++ + + L H D+ + S E
Sbjct: 118 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSDEG 173
Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G S SG + KR+RT+F QL +++ F ++ NPD +DL+++A TGLSKRV
Sbjct: 174 GDSESGHKSG----NKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRV 229
Query: 194 LQ 195
Q
Sbjct: 230 TQ 231
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 112 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 159
>gi|449479889|ref|XP_004177057.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1
[Taeniopygia guttata]
Length = 419
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 84/198 (42%), Gaps = 45/198 (22%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY +
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDE-------NKFVDKEDYLNN 121
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI----NANVMRIPSTTLEML 117
+ + S A TT LS DS P +D +ANV
Sbjct: 122 SNTAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAKDSESANV----------- 161
Query: 118 HSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
S + S E+ GA P RT+ K QL T+K+ F P
Sbjct: 162 -SDKETGSNENDDQNLGAKRRGP-------------RTTIKAKQLETLKAAFAATPKPTR 207
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 208 HIREQLAQETGLNMRVIQ 225
>gi|443703132|gb|ELU00843.1| hypothetical protein CAPTEDRAFT_221751 [Capitella teleta]
Length = 241
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 44/58 (75%), Gaps = 2/58 (3%)
Query: 140 PGSGVHSHQR--TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
PGS +S+Q+ TKR+RT+F QL+ +++ F ++ NPD +DL+++AQ TGLSKRV Q
Sbjct: 111 PGSDENSNQKQKTKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQ 168
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I +++ V RAR+ V+HL CF C +C L+ G+ F +++ + C+ HY
Sbjct: 56 IQATDWVRRARENVYHLACFACDACKRQLSTGEEFALQENRVLCKTHY 103
>gi|158296021|ref|XP_316578.4| AGAP006540-PA [Anopheles gambiae str. PEST]
gi|157016312|gb|EAA11207.4| AGAP006540-PA [Anopheles gambiae str. PEST]
Length = 334
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 143 GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G + +TKR+RT+F QL+ +++ FNI+ NPD +DL+++A TGLSKRV Q
Sbjct: 156 GYQKNNKTKRVRTTFTEEQLQILQANFNIDSNPDGQDLERIASVTGLSKRVTQ 208
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
IS+++ V RARDL+FHL CF C SCG L+ G+ F + D+ + C+ HY
Sbjct: 91 ISATDWVRRARDLIFHLACFACDSCGRQLSTGEQFALVDDKVLCKTHY 138
>gi|301756737|ref|XP_002914217.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Ailuropoda melanoleuca]
Length = 382
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 74/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
++ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AVAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGATEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|410986575|ref|XP_003999585.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Felis catus]
Length = 382
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 76/194 (39%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP S D
Sbjct: 155 ----------------------------LSLVSPAASDSG----------------KSDD 170
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S +S+ + +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 171 EESLCKSV-HGAGKGAAEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|426217051|ref|XP_004002767.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Ovis aries]
Length = 382
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP SG
Sbjct: 155 ----------------------------LSLVSPAASD-------------------SGK 167
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S ESL + H+R KR RT Q R K+ F ++ P K +
Sbjct: 168 -SDDEESLCKSAHGAGKGASEDSKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|268578911|ref|XP_002644438.1| C. briggsae CBR-LIM-4 protein [Caenorhabditis briggsae]
Length = 346
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 142 SGVHSHQ-RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SGV S + +TKR+RT+F QL +++YFN + NPD DL+++A TGLSKRV Q
Sbjct: 222 SGVSSQKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIANMTGLSKRVTQ 276
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I +++ V RAR+ V+HL CF C C L+ G+ + +++E + C+ HY
Sbjct: 167 IGAADWVRRARNFVYHLACFACNQCKRQLSTGEEYSLQEEHLLCKQHY 214
>gi|45382269|ref|NP_990744.1| LIM/homeobox protein Lhx1 [Gallus gallus]
gi|1708826|sp|P53411.1|LHX1_CHICK RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|531183|gb|AAA62173.1| amino acid feature: homeodomain, bp 674 .. 853; amino acid feature:
LIM2, bp 326 .. 481; amino acid feature: LIM1, bp 149
..292 [Gallus gallus]
Length = 406
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 85/199 (42%), Gaps = 47/199 (23%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLN 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI----NANVMRIPSTTLEM 116
++ + S A TT LS DS P +D +ANV
Sbjct: 121 NSNTAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAKDSESANV---------- 161
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
S + S E+ GA P RT+ K QL T+K+ F P
Sbjct: 162 --SDKETGSNENDDQNLGAKRRGP-------------RTTIKAKQLETLKAAFAATPKPT 206
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 207 RHIREQLAQETGLNMRVIQ 225
>gi|328708425|ref|XP_001944208.2| PREDICTED: LIM/homeobox protein Lhx3-like [Acyrthosiphon pisum]
Length = 375
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+DLV+HL CF C+ CG L GD F M D + C+P YE + ++
Sbjct: 109 LGIPPTQIVRRAQDLVYHLQCFACVMCGRTLNTGDEFYLMEDRKLVCKPDYEAAKTKEG- 167
Query: 60 GSAEIEQP 67
G + +QP
Sbjct: 168 GCLDGDQP 175
Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 36/195 (18%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++ + +H C C CG L D R+ M++C+ + R+ C ++ P
Sbjct: 56 FILKVLERTWHARCLKCNECGATL--ADKCFARNGMLFCKDDF-FKRYGTKCAGCDLGIP 112
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTL-EMLHSGDLSSSM 126
PT + + ++D+ ++ L++GD M
Sbjct: 113 ---------PTQIVRR---------------AQDLVYHLQCFACVMCGRTLNTGDEFYLM 148
Query: 127 ESL------SYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
E YE A + G + Q KR RT+ QL T+K +N + P
Sbjct: 149 EDRKLVCKPDYE--AAKTKEGGCLDGDQPNKRPRTTITAKQLETLKMAYNNSPKPARHVR 206
Query: 181 KQLAQKTGLSKRVLQ 195
+QL+Q TGL RV+Q
Sbjct: 207 EQLSQDTGLDMRVVQ 221
>gi|300797454|ref|NP_001178254.1| LIM homeobox transcription factor 1-alpha [Bos taurus]
gi|296489924|tpg|DAA32037.1| TPA: LIM homeobox transcription factor 1 alpha-like [Bos taurus]
Length = 382
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP SG
Sbjct: 155 ----------------------------LSLVSPAASD-------------------SGK 167
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S ESL + H+R KR RT Q R K+ F ++ P K +
Sbjct: 168 -SDDEESLCKSAHGAGKGASEDSKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|308512521|ref|XP_003118443.1| CRE-LIM-4 protein [Caenorhabditis remanei]
gi|308239089|gb|EFO83041.1| CRE-LIM-4 protein [Caenorhabditis remanei]
Length = 355
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 142 SGVHSHQ-RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SGV S + +TKR+RT+F QL +++YFN + NPD DL+++A TGLSKRV Q
Sbjct: 230 SGVSSQKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIATMTGLSKRVTQ 284
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I S++ V RAR+ V+HL CF C C L+ G+ + +++ + C+ H+
Sbjct: 175 IQSTDWVRRARNYVYHLACFACNQCKRQLSTGEEYALQEGNLLCKQHF 222
>gi|157134682|ref|XP_001663345.1| arrowhead [Aedes aegypti]
gi|108870378|gb|EAT34603.1| AAEL013168-PA, partial [Aedes aegypti]
Length = 306
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E + + + G +TKR+RT+F QL+ +++ FNI+ NPD +DL+++A
Sbjct: 125 EMFDCGTSSDDGCEADGFQKSNKTKRVRTTFTEEQLQILQANFNIDSNPDGQDLERIASV 184
Query: 187 TGLSKRVLQ 195
TGLSKRV Q
Sbjct: 185 TGLSKRVTQ 193
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
IS+S+ V RAR+L FHL CF C SCG L+ G+ F + D+ + C+ HY
Sbjct: 76 ISASDWVRRARELTFHLACFACDSCGRQLSTGEQFALVDDKVLCKTHY 123
>gi|426384765|ref|XP_004058922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Gorilla gorilla
gorilla]
Length = 393
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV-ERASLG 142
Query: 61 SAEIEQPMSP-RPAPWQPTTV------QKGRPRKRKLSVDSPTPPSEDI 102
+ + P+ P RP T + R +S+DSP+ P+ +
Sbjct: 143 AGDPLSPLHPARPLQMAGTPLPGSGRQAPARFNALTVSLDSPSTPTPSV 191
>gi|47219374|emb|CAG01537.1| unnamed protein product [Tetraodon nigroviridis]
Length = 390
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 42/195 (21%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GI S+LV RA+ VFHL+CFTC+ C L+ G+ + DE + C+ Y +D
Sbjct: 62 GILPSDLVRRAKSKVFHLNCFTCMICNKQLSTGEELYILDEFKFVCKEDYHNCNGKD--- 118
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
T+ LSV S + PS ++ + E H
Sbjct: 119 ------------------TIL--------LSVTSCSDPSMSPDSQDPQDDGKDSETGH-- 150
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
LS + GN + G +R RT+ K QL T+K+ F P
Sbjct: 151 --------LSDKDACGNENDEQGAVGKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 200
Query: 181 KQLAQKTGLSKRVLQ 195
+QL+Q+TGL+ RV+Q
Sbjct: 201 EQLSQETGLNMRVIQ 215
>gi|410915338|ref|XP_003971144.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 397
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 40/194 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI S+LV RA+ VFHL+CFTC+ C L+ G E +Y ++ + DY S
Sbjct: 69 GILPSDLVRRAKSKVFHLNCFTCMMCNKQLSTG-------EELYVLDEFKFVCKEDYHNS 121
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ + + LSV S + PS ++ + E H
Sbjct: 122 SGKDTIL---------------------LSVTSCSDPSMSPDSQDPQDDGKDSETGH--- 157
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
LS + GN + G +R RT+ K QL T+K+ F P +
Sbjct: 158 -------LSDKDACGNENDEQGAVGKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIRE 208
Query: 182 QLAQKTGLSKRVLQ 195
QL+Q+TGL+ RV+Q
Sbjct: 209 QLSQETGLNMRVIQ 222
>gi|312385469|gb|EFR29961.1| hypothetical protein AND_00756 [Anopheles darlingi]
Length = 344
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I++S+ V +ARDLVFHL CF+C +CG L+ G+ F + D+ + CR HY
Sbjct: 124 IAASDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCRSHY 171
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 39/51 (76%)
Query: 145 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
++ ++KR+RT+F QL+ +++ F I+ NPD +DL+++AQ TGLSKRV Q
Sbjct: 192 YNKNKSKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAQLTGLSKRVTQ 242
>gi|351696220|gb|EHA99138.1| LIM homeobox transcription factor 1-alpha [Heterocephalus glaber]
Length = 382
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE---------- 149
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
++R+L + +P + D + D
Sbjct: 150 ------------------------KEREL-LSLVSPAASDSGKS---------------D 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ + +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAQGTGKGATEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|344287033|ref|XP_003415260.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Loxodonta
africana]
Length = 382
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 79/194 (40%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKER------- 152
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
E+ +SP + DS E+ +
Sbjct: 153 -ELLSLVSPAAS-------------------DSGKSDDEE-------------------N 173
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
L S ++ +G G + G H+R KR RT Q R K+ F ++ P K +
Sbjct: 174 LCKS----AHGAGKGAAEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|410903918|ref|XP_003965440.1| PREDICTED: LIM/homeobox protein Lhx5-like [Takifugu rubripes]
Length = 396
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 38/194 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV +AR VFHL+CFTC+ C L+ G E +Y + + D+ S
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTG-------EELYVIDENKFVCKEDFLSS 122
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
A + R LS D P +DI T S
Sbjct: 123 G----------ATKEANLNSVSSCTDRSLSPDLQDPTQDDIK--------ETDNSTSSDK 164
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
++++E+ SG P RT+ K QL T+K+ F P +
Sbjct: 165 ETNNIENEEQNSGTKRRGP-------------RTTIKAKQLETLKAAFVATPKPTRHIRE 211
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 212 QLAQETGLNMRVIQ 225
>gi|307195464|gb|EFN77350.1| LIM/homeobox protein Awh [Harpegnathos saltator]
Length = 291
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 15/190 (7%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+V+ +H C C +C L ++ +YCR Y + G+ +
Sbjct: 14 IVLCVGGRTWHSRCLRCCACARPLHDQHSCFLKGMRLYCRHDYALTF-----GAKCAKCG 68
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSS 125
S W V++ R R L+ + S ++ + + L H D+
Sbjct: 69 RSVGAGDW----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEG 124
Query: 126 MESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQ 185
+ S E G S G + KR+RT+F QL +++ F ++ NPD +DL+++A
Sbjct: 125 NNTSSDEGGDSESGHKGG----NKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAH 180
Query: 186 KTGLSKRVLQ 195
TGLSKRV Q
Sbjct: 181 VTGLSKRVTQ 190
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 71 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 118
>gi|259013450|ref|NP_001158468.1| ISL LIM homeobox 1 [Saccoglossus kowalevskii]
gi|197320557|gb|ACH68440.1| islet homeobox protein [Saccoglossus kowalevskii]
Length = 383
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 37/53 (69%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+G S ++ VMRAR+ +FH+ CF C++C L GD F +RD+ ++C+ ++++
Sbjct: 83 LGFSKNDFVMRARNKIFHIDCFRCVACSRQLIPGDEFALRDDGLFCKADHDVV 135
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H +T R+RT QL T+++ +N N PDA +QL + T LS RV++
Sbjct: 180 THHKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLTEMTNLSPRVIR 229
>gi|311253923|ref|XP_003125689.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Sus
scrofa]
Length = 382
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 73/194 (37%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE R
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKEREL----- 154
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
LS+ SP D
Sbjct: 155 ----------------------------LSLVSPAASDSG-----------------KSD 169
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S+ ++ +G G G H+R KR RT Q R K+ F ++ P K +
Sbjct: 170 DEESLCKSAHGAGKGAPEDG---KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|432915645|ref|XP_004079190.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oryzias latipes]
Length = 314
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I S++ V RA+ FHL CF+C SC L+ G+ G+ + ++CRPHY++ + S
Sbjct: 103 IHSTDWVRRAKGSTFHLACFSCASCKRQLSTGEECGLFENRVFCRPHYDVAME-NLKRSK 161
Query: 63 EIEQPM-SPRPAPWQPTTVQKGRPRKR 88
E EQP R A + +TV GRP KR
Sbjct: 162 ENEQPQPEDRSANKESSTV--GRPAKR 186
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA+KTGLS+RV+Q
Sbjct: 185 KRARTSFTVDQLQVMQTQFAKDNNPDAQTLQKLAEKTGLSRRVIQ 229
>gi|395531962|ref|XP_003768042.1| PREDICTED: LIM/homeobox protein Lhx1 [Sarcophilus harrisii]
Length = 406
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 85/199 (42%), Gaps = 47/199 (23%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI----NANVMRIPSTTLEM 116
++ + S A TT LS DS P +D +ANV
Sbjct: 121 NSSAAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAKDSESANV---------- 161
Query: 117 LHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPD 176
S + S E+ GA P RT+ K QL T+K+ F P
Sbjct: 162 --SDKETGSNENDDQNLGAKRRGP-------------RTTIKAKQLETLKAAFAATPKPT 206
Query: 177 AKDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 207 RHIREQLAQETGLNMRVIQ 225
>gi|270009219|gb|EFA05667.1| lim1 [Tribolium castaneum]
Length = 511
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 22/210 (10%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHY---------E 51
GIS S+LV +ARD VFHL+CFTC+ C L+ G +L+ + D C+ Y
Sbjct: 143 GISPSDLVRKARDKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKDDYLNGNKTAAIT 202
Query: 52 ILRHRDYCGSA---EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMR 108
H GSA E + S + + T+ P + ++ P S DI++++ +
Sbjct: 203 GHHHDSLMGSASEDEEDDDNSTASSVLKHHTLHGSLPPAPGETNNNSLPHS-DISSSIGQ 261
Query: 109 IPSTTL---EMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTM 165
T E +S D + M E N SP +R + RT+ K QL +
Sbjct: 262 DSKTGQDDSEDQNSFDGDAEMRDSQTE----NKSPDDSSAGSKR-RGPRTTIKAKQLEIL 316
Query: 166 KSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
K+ F+ P +QLA++TGL RV+Q
Sbjct: 317 KTAFSQTPKPTRHIREQLAKETGLPMRVIQ 346
>gi|170034028|ref|XP_001844877.1| arrowhead [Culex quinquefasciatus]
gi|167875285|gb|EDS38668.1| arrowhead [Culex quinquefasciatus]
Length = 213
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ S+ V +ARDLVFHL CF+C +CG L+ G+ F + D+ + C+ HY+
Sbjct: 32 IAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCKIHYQ 80
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ S S G S+ G + ++KR+RT+F QL +++ F I+ NPD +DL+++AQ
Sbjct: 84 DEASNSSDDGCSTDG---FNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQDLERIAQL 140
Query: 187 TGLSKRVLQ 195
TGLSKRV Q
Sbjct: 141 TGLSKRVTQ 149
>gi|351694308|gb|EHA97226.1| LIM/homeobox protein Lhx6 [Heterocephalus glaber]
Length = 294
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR------ 56
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 116 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAE 175
Query: 57 -----DYCGSAEIEQPMSPRPAPWQPTT---------VQKGRPRKRKLSVDSPTPPSEDI 102
G+ EQ P+PA T+ Q R R +K + P PPS
Sbjct: 176 NGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVWFQNCRARHKKHTPQHPVPPS--- 232
Query: 103 NANVMRIPSTTLEMLHSGDLSS 124
A R+PS + +H SS
Sbjct: 233 GAPPTRLPSALSDDIHYSPFSS 254
>gi|351707222|gb|EHB10141.1| LIM homeobox transcription factor 1-beta [Heterocephalus glaber]
Length = 395
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 54/195 (27%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
+P + +V+ SED GD
Sbjct: 180 ----------SPDESDSVK-----------------SED----------------EDGDT 196
Query: 123 SSSMESLSYESGAGNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ G G+ S GSG +R KR RT Q R K+ F ++ P K
Sbjct: 197 KPT-------KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249
Query: 181 KQLAQKTGLSKRVLQ 195
+ A +TGLS RV+Q
Sbjct: 250 ETRAAETGLSVRVVQ 264
>gi|332029130|gb|EGI69141.1| LIM/homeobox protein Awh [Acromyrmex echinatior]
Length = 292
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C +C L R +YCR Y+ R + G+ + S W
Sbjct: 22 TWHSRCLRCSACARPLHDQHSCFQRGMRVYCRHDYD----RTF-GAKCAKCGRSVGAGDW 76
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSMESLSYES 133
V++ R R L+ + S ++ + + L H D+ + S E
Sbjct: 77 ----VRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHYLDVVEGNNNSSAEG 132
Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G S G + KR+RT+F QL +++ F ++ NPD +DL+++A TGLSKR+
Sbjct: 133 GDSESGHKGG----NKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRI 188
Query: 194 LQ 195
Q
Sbjct: 189 TQ 190
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 71 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 118
>gi|9994171|ref|NP_065204.1| insulin gene enhancer protein ISL-2 [Rattus norvegicus]
gi|1708563|sp|P50480.1|ISL2_RAT RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531218|gb|AAA62161.1| amino acid feature: homeodomain, bp 647 .. 826; amino acid feature:
LIM1, bp 155 .. 307; amino acid feature: LIM2, bp 341 ..
493 [Rattus norvegicus]
Length = 360
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 S 61
S
Sbjct: 154 S 154
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 132 ESGAGNS-SPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGL 189
++G+G S + VH ++T R+RT QL T+++ + N PDA +QL + TGL
Sbjct: 172 DAGSGQQVSLRTHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL 231
Query: 190 SKRVLQ 195
S RV++
Sbjct: 232 SPRVIR 237
>gi|56694828|gb|AAW23076.1| Lhx2/9, partial [Oikopleura dioica]
Length = 229
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 36/47 (76%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+ KR+RTSFK++Q+ MK F + NPDA DLK LA +TGL+KRVLQ
Sbjct: 155 KQKRIRTSFKNYQINAMKRAFQMKPNPDASDLKTLAVETGLTKRVLQ 201
>gi|449282069|gb|EMC88978.1| LIM/homeobox protein Lhx1 [Columba livia]
Length = 400
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 84/198 (42%), Gaps = 45/198 (22%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY +
Sbjct: 63 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDE-------NKFVCKEDYLNN 115
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDI----NANVMRIPSTTLEML 117
+ + S A TT LS DS P +D +ANV
Sbjct: 116 SNTAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAKDSESANV----------- 155
Query: 118 HSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
S + S E+ GA P RT+ K QL T+K+ F P
Sbjct: 156 -SDKETGSNENDDQNLGAKRRGP-------------RTTIKAKQLETLKAAFAATPKPTR 201
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 202 HIREQLAQETGLNMRVIQ 219
>gi|327291516|ref|XP_003230467.1| PREDICTED: LIM/homeobox protein Lhx3-like, partial [Anolis
carolinensis]
Length = 314
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYCG 60
GI +++V RA+D V+HLHCF+CI C L GD F M D + C+ YE + R+
Sbjct: 12 GIPPTQVVRRAQDFVYHLHCFSCIVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAES 71
Query: 61 SAE 63
+A+
Sbjct: 72 TAK 74
>gi|47217859|emb|CAG02352.1| unnamed protein product [Tetraodon nigroviridis]
Length = 235
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+E + CR + +L R G
Sbjct: 94 LGFSSSDLVMRARDHVYHIECFRCSVCSRQLLPGDEFSLREEELLCRADHSLLLERSSAG 153
Query: 61 SAEIEQPMSP 70
S P+SP
Sbjct: 154 S-----PISP 158
>gi|170034020|ref|XP_001844873.1| arrowhead [Culex quinquefasciatus]
gi|167875281|gb|EDS38664.1| arrowhead [Culex quinquefasciatus]
Length = 304
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 21/195 (10%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
S + ++ +H C C C L + +RD IYC+ Y G+
Sbjct: 18 SDQYLLDVGGCSWHSACLRCCICHTPLDQQPSCFLRDRQIYCKADYASTF-----GAKCA 72
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD--L 122
S + W V++ R L+ + + R ST + + D L
Sbjct: 73 RCSRSISASDW----VRRARKMIFHLACFACD--------SCGRQLSTGEQFALADDKVL 120
Query: 123 SSSMESLSYESG--AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++ G + + G+ ++KR+RT+F QL+ +++ FNI+ NPD +DL
Sbjct: 121 CKKHYSEFFDCGTSSDDGCEADGLQKSNKSKRVRTTFTEEQLQILQANFNIDSNPDGQDL 180
Query: 181 KQLAQKTGLSKRVLQ 195
+++A TGLSKRV Q
Sbjct: 181 ERIASVTGLSKRVTQ 195
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
IS+S+ V RAR ++FHL CF C SCG L+ G+ F + D+ + C+ HY
Sbjct: 78 ISASDWVRRARKMIFHLACFACDSCGRQLSTGEQFALADDKVLCKKHY 125
>gi|157137277|ref|XP_001663968.1| arrowhead [Aedes aegypti]
gi|108869746|gb|EAT33971.1| AAEL013763-PA, partial [Aedes aegypti]
Length = 211
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+ +H C C C L + +D +YC+ Y I + + C
Sbjct: 25 IFEVSGCAWHGSCLRCSICYCSLERQVSCYFKDGEVYCKTDY-IKKFKASCAKC----SR 79
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
S P+ W V++ R L+ + ++ I L H +L +
Sbjct: 80 SISPSDW----VRRARDFVFHLACFACDSCGRQLSTGEQFAIIDDRVLCKTHYMEL---I 132
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ + S G + G +S +TKR+RT+F Q++ +++ F I+ NPD +DL+++A
Sbjct: 133 DDGTTSSEDGCDAEG---NSKNKTKRIRTTFTEEQIQILQANFQIDSNPDGQDLERIALA 189
Query: 187 TGLSKRVLQ 195
TGLSKRV Q
Sbjct: 190 TGLSKRVTQ 198
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
IS S+ V RARD VFHL CF C SCG L+ G+ F + D+ + C+ HY
Sbjct: 81 ISPSDWVRRARDFVFHLACFACDSCGRQLSTGEQFAIIDDRVLCKTHY 128
>gi|312379882|gb|EFR26035.1| hypothetical protein AND_08145 [Anopheles darlingi]
Length = 324
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 25/187 (13%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEILRHRDYCGSAEIEQPM 68
MRA+ ++H+ CF C +C L GD F +RD +YC+ ++ L G +
Sbjct: 1 MRAKTKIYHIECFRCSACARQLIPGDEFALRDGGSLYCKEDHDHLEKTSQNG-------L 53
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMES 128
P P + + ++ + + + ++ + + SGD S S +S
Sbjct: 54 LPGVEPNNNISANANNNNINSTNNNNSSLNNNNHSSELGSM---------SGDESGSHKS 104
Query: 129 LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 188
L G G S P G + R+RT QL T+++ +N N PDA +QL + TG
Sbjct: 105 LR---GKGPSGPSDG-----KPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTG 156
Query: 189 LSKRVLQ 195
LS RV++
Sbjct: 157 LSPRVIR 163
>gi|313239000|emb|CBY13986.1| unnamed protein product [Oikopleura dioica]
Length = 201
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 36/47 (76%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+ KR+RTSFK++Q+ MK F + NPDA DLK LA +TGL+KRVLQ
Sbjct: 125 KQKRIRTSFKNYQINAMKRAFQMKPNPDASDLKTLAVETGLTKRVLQ 171
>gi|170034026|ref|XP_001844876.1| LIM/homeobox protein Awh [Culex quinquefasciatus]
gi|167875284|gb|EDS38667.1| LIM/homeobox protein Awh [Culex quinquefasciatus]
Length = 198
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ S+ V +ARDLVFHL CF+C +CG L+ G+ F + D+ + C+ HY+
Sbjct: 15 IAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCKIHYQ 63
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ S S G S+ G + ++KR+RT+F QL +++ F I+ NPD +DL+++AQ
Sbjct: 67 DEASNSSDDGCSTDG---FNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQDLERIAQL 123
Query: 187 TGLSKRVLQ 195
TGLSKRV Q
Sbjct: 124 TGLSKRVTQ 132
>gi|47224946|emb|CAG06516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 408
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 38/195 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS ++LV RAR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 69 GISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ ++ LSV + + PS ++ L+
Sbjct: 121 NSNVKD--------------------TNLLSVTTCSDPSLSPDSQDQLQDDVVLK----- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + +LS + N + + +R RT+ K QL T+K+ F P
Sbjct: 156 --DTEIAALSDKETVNNENDDQNLGGKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 211
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 212 EQLAQETGLNMRVIQ 226
>gi|301778549|ref|XP_002924694.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Ailuropoda melanoleuca]
Length = 365
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRGQW 157
Query: 60 GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDS 94
GS P P+ W Q R ++++L D+
Sbjct: 158 GSP----PTLLSPSVW----FQNRRAKEKRLKKDA 184
>gi|34733869|gb|AAQ81867.1| islet 2 [Ambystoma mexicanum]
Length = 361
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 50/195 (25%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRAR+ V+H+ CF C C L GD F +R+ + CR + H D
Sbjct: 94 LGFSSSDLVMRARERVYHMECFRCSLCNRQLLPGDEFCLREHELLCRAEHS---HLD--- 147
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ P+P P +Q GRP LH
Sbjct: 148 ----REAAGSPPSPTSPGPLQGGRP-------------------------------LHLA 172
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
D S ++ + P + + + T+ +RT QL T+++ + N PDA
Sbjct: 173 DSVSGRQT--------SLRPHAHKQAEKTTR-VRTVLNEKQLHTLRTCYAANPRPDALMK 223
Query: 181 KQLAQKTGLSKRVLQ 195
+QL + TGLS RV++
Sbjct: 224 EQLVEMTGLSPRVIR 238
>gi|281347117|gb|EFB22701.1| hypothetical protein PANDA_014076 [Ailuropoda melanoleuca]
Length = 369
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRGQW 157
Query: 60 GS 61
GS
Sbjct: 158 GS 159
>gi|432853477|ref|XP_004067726.1| PREDICTED: LIM/homeobox protein Lhx8 [Oryzias latipes]
Length = 338
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L ++++ I+C+ Y R+ +C
Sbjct: 67 LLKVNDLCWHVRCLSCSVCQTSLGSHASCYIKEKEIFCKLDY-FRRYGTWCACC----GR 121
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
+ W V++ + L+ + ++ + L +H + ++
Sbjct: 122 NIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEGKVLCRIHYDCMLDNL 177
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E G G + G+ ++ + +KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 178 KR-AVEKGTGVNMEGAVPTEQEINQPKPSKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 236
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 237 KLAEETGLSRRVIQ 250
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + + + CR HY+ +
Sbjct: 123 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEGKVLCRIHYDCM 173
>gi|326205389|dbj|BAJ84073.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
Length = 189
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAP 74
S P SP P P
Sbjct: 154 S-----PRSPGPLP 162
>gi|395845905|ref|XP_003795658.1| PREDICTED: LIM/homeobox protein Lhx1 [Otolemur garnettii]
Length = 407
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 86/196 (43%), Gaps = 40/196 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + + S A TT LS DS P +D
Sbjct: 121 NSSVAKENSLHSA----TTGS-----DPSLSPDSQDPSQDDAK----------------- 154
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRT-MKSYFNINQNPDAKD 179
S ++S + G N + + + +R RT+ K QL T +K+ F P
Sbjct: 155 --DSESANVSDKEGGSNENDDQNLGAKRRGP--RTTIKAKQLETLLKAAFAATPKPTRHI 210
Query: 180 LKQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 211 REQLAQETGLNMRVIQ 226
>gi|390345308|ref|XP_790548.3| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Strongylocentrotus purpuratus]
Length = 387
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I SSELVMRA V+HL CFTC++C L KGD F +++ +YC+ Y
Sbjct: 99 IPSSELVMRALSNVYHLRCFTCVTCDQQLKKGDEFVLKENRLYCKEDY 146
>gi|47177844|emb|CAG14401.1| unnamed protein product [Tetraodon nigroviridis]
Length = 63
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI 52
+G S ++ VMRAR V+H+ CF C++C L GD F +RD+ ++CR +++
Sbjct: 12 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRDDGLFCRADHDV 63
>gi|37789883|gb|AAP04274.1| ScLim1 [Scyliorhinus canicula]
Length = 237
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ D+
Sbjct: 13 GISPSDLVRRARSKVFHLNCFTCMICNKQLSTGEELYIIDENKFVCKD--------DFLN 64
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
S + + G S S +P S+D L
Sbjct: 65 SN---------------NSRENGALSVTACSDQSLSPDSQD--------------HLQDD 95
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + A N + + + +R RT+ K QL T+K+ F P
Sbjct: 96 TKDSESANISDKETASNENEEQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 153
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 154 EQLAQETGLNMRVIQ 168
>gi|196011854|ref|XP_002115790.1| hypothetical protein TRIADDRAFT_30033 [Trichoplax adhaerens]
gi|190581566|gb|EDV21642.1| hypothetical protein TRIADDRAFT_30033 [Trichoplax adhaerens]
Length = 292
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 39/195 (20%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GI +ELV RARD V+H+ C C CG ++ G E +Y I +H Y
Sbjct: 68 IGIPPNELVRRARDDVYHIKCLKCAICGRQMSTG-------EQLY------INQHNQYIC 114
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
A+ + +S L+ S T ED N++ T ++L +
Sbjct: 115 QADYQNSISSTNTS---------------LNDQSLTDDKEDDNSDYDEKEDETEDLLDNN 159
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ ESG G RT+ K QL +K+ F I P
Sbjct: 160 NEDDLQADNDNESGNNCKKRGP-----------RTTIKTEQLEMLKNAFAITPKPTRLIR 208
Query: 181 KQLAQKTGLSKRVLQ 195
++LAQ+TGL+ RV+Q
Sbjct: 209 ERLAQQTGLNMRVIQ 223
>gi|449478428|ref|XP_002187534.2| PREDICTED: LIM/homeobox protein Lhx3 [Taeniopygia guttata]
Length = 665
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 149
>gi|18858979|ref|NP_571282.1| LIM homeobox 1b [Danio rerio]
gi|2155289|gb|AAB58796.1| LIM class homeodomain protein [Danio rerio]
gi|190336839|gb|AAI62280.1| LIM homeobox 1b [Danio rerio]
gi|190340149|gb|AAI62303.1| LIM homeobox 1b [Danio rerio]
Length = 402
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 39/194 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV +AR VFHL+CFTCI C L+ G+ + DE Y+ + DY +
Sbjct: 69 GISPSDLVRKARSKVFHLNCFTCIMCNKQLSTGEELYILDE-------YKFVCKEDYLNN 121
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ + LS+ + + PS + + P + SG
Sbjct: 122 SNGKD--------------------TNLLSITTCSDPSLSPES---QDPQDDYKDSESGP 158
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+S E+ + E+ N + + RT+ K QL T+K+ F P +
Sbjct: 159 MSDK-ETCNNENDEQNLG--------GKRRGPRTTIKAKQLETLKAAFAATPKPTRHIRE 209
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 210 QLAQETGLNMRVIQ 223
>gi|66571156|gb|AAY51543.1| IP01440p [Drosophila melanogaster]
Length = 272
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHRDYCGSAEIE 65
MR + VFHL CF C+ CG LL KG+ + ++ ++CR Y E+L+ D+ G
Sbjct: 1 MRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDFYGDELFP 60
Query: 66 QPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
+ R P +P T+ + R+ K S + P + N+ + +L ++
Sbjct: 61 PKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQ 114
>gi|241716001|ref|XP_002412129.1| arrowhead, putative [Ixodes scapularis]
gi|215505217|gb|EEC14711.1| arrowhead, putative [Ixodes scapularis]
Length = 114
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+TKR+RT+F QL+ +++ FN++ NPD +DL+++AQ TGLSKRV Q
Sbjct: 31 KTKRVRTTFTEEQLQVLQANFNLDSNPDGQDLERIAQITGLSKRVTQ 77
>gi|157137279|ref|XP_001663969.1| arrowhead [Aedes aegypti]
gi|108869747|gb|EAT33972.1| AAEL013765-PA [Aedes aegypti]
Length = 201
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I+ S+ V +ARDLVFHL CF+C +CG L+ G+ F + D+ + C+ HY
Sbjct: 20 IAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCKIHY 67
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 130 SYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGL 189
S S G S+ G + ++KR+RT+F QL +++ F I+ NPD +DL+++AQ TGL
Sbjct: 74 SNSSDDGCSTDG---FNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQDLERIAQLTGL 130
Query: 190 SKRVLQ 195
SKRV Q
Sbjct: 131 SKRVTQ 136
>gi|431897001|gb|ELK06265.1| LIM/homeobox protein Lhx8 [Pteropus alecto]
Length = 306
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 108 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 162
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 163 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 218
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 219 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 277
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 278 KLAERTGLSRRVIQ 291
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 164 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 214
>gi|154147696|ref|NP_001093698.1| LIM homeobox 1 [Xenopus (Silurana) tropicalis]
gi|138519843|gb|AAI35732.1| lhx1 protein [Xenopus (Silurana) tropicalis]
Length = 409
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 36/195 (18%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ Y L + +
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY--LNNNNNNN 126
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+A E +V P LS +S P +D
Sbjct: 127 NAAKENSF---------ISVTGSDP---SLSPESQDPLQDDAK----------------- 157
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + N + + + +R RT+ K QL T+K+ F P
Sbjct: 158 --DSESANISDKEAGVNENDDQNLGAKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 213
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 214 EQLAQETGLNMRVIQ 228
>gi|9971753|gb|AAG10399.1| lim-homeobox transcription factor LHX3 [Homo sapiens]
Length = 397
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L G D + M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDDFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|348532229|ref|XP_003453609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 407
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 38/195 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS ++LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------DDYLN 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ ++ LSV + + PS ++ L+
Sbjct: 121 NTSVKD--------------------TNLLSVTACSDPSLSPDSQDQLQDDVVLK----- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + +LS + N + + +R RT+ K QL T+K+ F P
Sbjct: 156 --DTEIATLSDKETVNNENDDQNLGGKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 211
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 212 EQLAQETGLNMRVIQ 226
>gi|289541370|gb|ADD09808.1| LIM-homeodomain transcription factor islet protein [Branchiostoma
belcheri]
Length = 250
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH----- 55
+G + ++ VMRAR+ ++H+ CF C++C L GD F +R++ ++C+ +E+L
Sbjct: 44 LGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKTDHEVLERASNNV 103
Query: 56 ----RDYCGSAEIEQPMSPRP 72
R GS ++E M+ RP
Sbjct: 104 DSNGRASLGSTDLE--MATRP 122
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 152 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 145 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 188
>gi|47215186|emb|CAG01452.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L+ ++++ ++C+ Y R+ +C
Sbjct: 24 LLKVNDLCWHVRCLSCSVCHTSLSSHTSCYIKEKEVFCKLDY-FRRYGTWCACC----GR 78
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
+ W V++ + L+ + ++ + L +H + +
Sbjct: 79 NIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM---L 131
Query: 127 ESLSYESGAGNSSPGSG-------VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
++L GNS G ++ + +KR RTSF QL+ M++ F + NPDA+
Sbjct: 132 DNLKRAVEKGNSVNMEGAVPTEQEINQPKPSKRARTSFTADQLQVMQAQFAQDNNPDAQT 191
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 192 LQKLAEQTGLSRRVIQ 207
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 79 NIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 130
>gi|351701911|gb|EHB04830.1| LIM/homeobox protein Lhx3 [Heterocephalus glaber]
Length = 448
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 146 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 205
Query: 60 GSAE 63
+A+
Sbjct: 206 ATAK 209
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 208 AKRPRTTITAKQLETLKSAYNASPKPARHVREQLSSETGLDMRVVQ 253
>gi|358411510|ref|XP_589896.5| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
Length = 443
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 184 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 238
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 239 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 294
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 295 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 353
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 354 KLAERTGLSRRVIQ 367
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 240 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 290
>gi|324511084|gb|ADY44626.1| LIM/homeobox protein Awh [Ascaris suum]
Length = 384
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 23/188 (12%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++ +H C C C + L + +++++IYC+P Y +R + G+
Sbjct: 130 ILLNVNSRFWHTECLRCSQCSVHLDQYPSCFIKEDIIYCKPCY----NRQF-GTKCSSCR 184
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSME 127
+P W V++ R L+ + + +T E D +
Sbjct: 185 RLIQPTDW----VRRARSFVYHLAC---------FACDQCKRQLSTGEEFALQDCRLLCK 231
Query: 128 SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
E G + +TKR+RT+F QL ++++F I+ NPD DL+++A T
Sbjct: 232 QHYVELVEGETG-----QQKAKTKRVRTTFAEEQLAVLQTHFQIDSNPDGADLERIATMT 286
Query: 188 GLSKRVLQ 195
GLSKRV Q
Sbjct: 287 GLSKRVTQ 294
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I ++ V RAR V+HL CF C C L+ G+ F ++D + C+ HY
Sbjct: 187 IQPTDWVRRARSFVYHLACFACDQCKRQLSTGEEFALQDCRLLCKQHY 234
>gi|46276323|gb|AAS86420.1| lhx7 [Oryzias latipes]
Length = 191
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 11 RARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSP 70
+ DL +H+ C +C C L ++++ I+C+ Y R+ +C +
Sbjct: 1 KVNDLCWHVRCLSCSVCQTSLGSHASCYIKEKEIFCKLDY-FRRYGTWCACC----GRNI 55
Query: 71 RPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSMES 128
W V++ + L+ + ++ + L +H + +++
Sbjct: 56 HSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEGKVLCRIHYDCMLDNLKR 111
Query: 129 LSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQL 183
+ E G G + G+ ++ + +KR RTSF QL+ M++ F + NPDA+ L++L
Sbjct: 112 -AVEKGTGVNMEGAVPTEREINQPKPSKRARTSFPADQLQVMQAQFAQDNNPDAQTLQKL 170
Query: 184 AQKTGLSKRVLQ 195
A++TGLS+RV+Q
Sbjct: 171 AEETGLSRRVIQ 182
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + + + CR HY+ +
Sbjct: 55 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEGKVLCRIHYDCM 105
>gi|6683579|dbj|BAA89261.1| apterous [Bombyx mori]
Length = 62
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 22 FTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC 59
FTC++CG L+KGD+FGM+ ++YCRPHY+ DYC
Sbjct: 1 FTCVACGTQLSKGDVFGMKGGLVYCRPHYDTACLDDYC 38
>gi|194390004|dbj|BAG60518.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 80/194 (41%), Gaps = 51/194 (26%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY +
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKF-------VCKEDYLSN 121
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ + + S P Q + DS + ANV S
Sbjct: 122 SSVAKENSLHSDPSQDD------------AKDSES-------ANV------------SDK 150
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ S E+ GA P RT+ K QL T+K+ F P +
Sbjct: 151 EAGSNENDDQNLGAKRRGP-------------RTTIKAKQLETLKAAFAATPKPTRHIRE 197
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 198 QLAQETGLNMRVIQ 211
>gi|109109779|ref|XP_001096188.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Macaca mulatta]
Length = 402
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|390339027|ref|XP_781774.3| PREDICTED: insulin gene enhancer protein ISL-1-like
[Strongylocentrotus purpuratus]
Length = 402
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR------- 54
G + ++ VMRAR+ ++H+ CF C++C L GD F +R++ ++C+ +E++
Sbjct: 119 GFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADHEVMERPGDRDQ 178
Query: 55 -----HRDYCGSAEIEQPMSPR 71
HR+Y + E PM R
Sbjct: 179 VPNVNHRNYINATRAE-PMPNR 199
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 138 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SS S VH ++ R+RT QL T+++ + N PDA +QL + T LS RV++
Sbjct: 201 SSGRSHVHKQEKPTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTQLSPRVIR 258
>gi|344308350|ref|XP_003422840.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Loxodonta africana]
Length = 401
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 157
Query: 60 GSAE 63
+A+
Sbjct: 158 ATAK 161
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C L + R E +YCR + R C + ++ P
Sbjct: 45 FILKALDRHWHSKCLKCSDCHTPLAERCF--SRGESVYCREDF-FRRFGTKCAACQLGIP 101
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 102 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 137
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 138 EDSRLVCKADYET-AKQREAEATAKRPRTTITAKQLETLKSAYNNSPKPARHVREQLSSE 196
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 197 TGLDMRVVQ 205
>gi|326205258|dbj|BAJ84011.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 386
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 84 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 143
Query: 60 GSAE 63
+A+
Sbjct: 144 ATAK 147
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 146 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 191
>gi|426222898|ref|XP_004005617.1| PREDICTED: LIM/homeobox protein Lhx3 [Ovis aries]
Length = 401
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 157
Query: 60 GSAE 63
+A+
Sbjct: 158 ATAK 161
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 160 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
>gi|6572499|gb|AAF17291.1| LHX3 protein [Homo sapiens]
gi|6572501|gb|AAF17292.1| LHX3 protein [Homo sapiens]
Length = 370
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 68 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 127
Query: 60 GSAE 63
+A+
Sbjct: 128 ATAK 131
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 73/195 (37%), Gaps = 41/195 (21%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C L + R E +YC+ + R C + ++ P
Sbjct: 15 FILKALDRHWHSKCLKCSDCHTPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 71
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 72 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 107
Query: 127 ES------LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
E YE+ + + KR RT+ QL T+KS +N + P
Sbjct: 108 EDSRLVCKADYETAKQREAEAT-------AKRPRTTITAKQLETLKSAYNTSPKPARHVR 160
Query: 181 KQLAQKTGLSKRVLQ 195
+QL+ +TGL RV+Q
Sbjct: 161 EQLSSETGLDMRVVQ 175
>gi|348574776|ref|XP_003473166.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Cavia porcellus]
Length = 403
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYEAAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|344308352|ref|XP_003422841.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Loxodonta africana]
Length = 403
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 157
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C L + R E +YCR + R C + ++ P
Sbjct: 47 FILKALDRHWHSKCLKCSDCHTPLAERCF--SRGESVYCREDF-FRRFGTKCAACQLGIP 103
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 104 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 139
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 140 EDSRLVCKA-DYETAKQREAEATAKRPRTTITAKQLETLKSAYNNSPKPARHVREQLSSE 198
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 199 TGLDMRVVQ 207
>gi|291398678|ref|XP_002715959.1| PREDICTED: LIM homeobox 8 [Oryctolagus cuniculus]
Length = 371
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 108 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 162
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 163 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 218
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 219 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 277
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 278 KLAERTGLSRRVIQ 291
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 164 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 214
>gi|114627512|ref|XP_001171089.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan troglodytes]
Length = 402
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|395844276|ref|XP_003794888.1| PREDICTED: LIM/homeobox protein Lhx3 [Otolemur garnettii]
Length = 402
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 157
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|261490776|ref|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa]
gi|238683613|gb|ACR54090.1| LIM homeobox 8 [Sus scrofa]
Length = 295
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ +++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 24 KYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRC 78
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSS 124
W V++ + L+ + ++ + L +H +
Sbjct: 79 GRHIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLD 134
Query: 125 SMESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
+++ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+
Sbjct: 135 NLKR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 193
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 194 LQKLAERTGLSRRVIQ 209
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 82 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 132
>gi|297685716|ref|XP_002820429.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pongo abelii]
Length = 402
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|7657303|ref|NP_055379.1| LIM/homeobox protein Lhx3 isoform b [Homo sapiens]
gi|7110145|gb|AAF36809.1|AF156889_1 LIM homeobox protein 3 isoform b [Homo sapiens]
gi|119608611|gb|EAW88205.1| LIM homeobox 3, isoform CRA_a [Homo sapiens]
gi|157169604|gb|AAI52819.1| LIM homeobox 3 [synthetic construct]
gi|162318656|gb|AAI56736.1| LIM homeobox 3 [synthetic construct]
gi|307685965|dbj|BAJ20913.1| LIM homeobox 3 [synthetic construct]
gi|326205262|dbj|BAJ84013.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 402
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|402896089|ref|XP_003911140.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Papio anubis]
Length = 373
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 71 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 130
Query: 60 GSAE 63
+A+
Sbjct: 131 ATAK 134
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 133 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 178
>gi|109109777|ref|XP_001096075.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Macaca mulatta]
Length = 397
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 95 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 154
Query: 60 GSAE 63
+A+
Sbjct: 155 ATAK 158
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 157 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
>gi|25453086|sp|O97581.1|LHX3_PIG RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [Sus scrofa]
Length = 383
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 80 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 137
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 142 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 187
>gi|440907910|gb|ELR57994.1| LIM/homeobox protein Lhx8 [Bos grunniens mutus]
Length = 375
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 106 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 160
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 161 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 216
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 217 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 275
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 276 KLAERTGLSRRVIQ 289
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 162 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 212
>gi|332833327|ref|XP_003312450.1| PREDICTED: LIM/homeobox protein Lhx3 [Pan troglodytes]
Length = 396
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 94 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 153
Query: 60 GSAE 63
+A+
Sbjct: 154 ATAK 157
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 156 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 201
>gi|297278964|ref|XP_001097664.2| PREDICTED: LIM/homeobox protein Lhx8-like [Macaca mulatta]
gi|402854981|ref|XP_003892128.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Papio anubis]
Length = 356
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 87 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 141
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 142 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 197
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 198 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 256
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 257 KLAERTGLSRRVIQ 270
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 143 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 193
>gi|51494804|gb|AAH40321.1| LIM homeobox 8 [Homo sapiens]
gi|312150920|gb|ADQ31972.1| LIM homeobox 8 [synthetic construct]
Length = 356
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 87 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 141
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 142 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 197
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 198 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 256
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 257 KLAERTGLSRRVIQ 270
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 143 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 193
>gi|402896087|ref|XP_003911139.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Papio anubis]
Length = 402
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|194226030|ref|XP_001918019.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Equus
caballus]
Length = 401
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 157
Query: 60 GSAE 63
+A+
Sbjct: 158 ATAK 161
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 160 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
>gi|327290473|ref|XP_003229947.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like, partial
[Anolis carolinensis]
Length = 293
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 76/198 (38%), Gaps = 62/198 (31%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
IS S+ VMRA+ V+H+ CF C C L KGD F +++ + C YE
Sbjct: 12 AISPSQFVMRAQKNVYHVACFCCGVCEKQLQKGDEFVLKEGQLLCNSDYE--------KE 63
Query: 62 AEIEQPMSPRPA-PWQPTTVQ---KGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEML 117
E+ +SP + P + + V+ K + RK+S D+
Sbjct: 64 CELLSLVSPAASDPGKSSDVENLCKMEEKTRKVSEDT----------------------- 100
Query: 118 HSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
H+R KR RT Q R K+ F ++ P
Sbjct: 101 ---------------------------KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCR 133
Query: 178 KDLKQLAQKTGLSKRVLQ 195
K + LA +TGLS RV+Q
Sbjct: 134 KVRETLAAETGLSVRVVQ 151
>gi|296191167|ref|XP_002743507.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Callithrix jacchus]
Length = 402
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|293345787|ref|XP_001078243.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|293357700|ref|XP_001059910.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|149039302|gb|EDL93522.1| rCG45383, isoform CRA_b [Rattus norvegicus]
Length = 402
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C + L + R E +YC+ + R C + ++ P
Sbjct: 47 FILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 103
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 104 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 139
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 140 EDSRLVCKA-DYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSE 198
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 199 TGLDMRVVQ 207
>gi|89001116|ref|NP_001034742.1| LIM/homeobox protein Lhx3 [Mus musculus]
gi|598327|gb|AAB64178.1| homeodomain protein [Mus musculus]
gi|124375774|gb|AAI32557.1| LIM homeobox protein 3 [Mus musculus]
gi|124376794|gb|AAI32555.1| LIM homeobox protein 3 [Mus musculus]
Length = 402
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C + L + R E +YC+ + R C + ++ P
Sbjct: 47 FILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 103
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 104 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 139
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 140 EDSRLVCKADYET-AKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSE 198
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 199 TGLDMRVVQ 207
>gi|332222205|ref|XP_003260257.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Nomascus
leucogenys]
Length = 356
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 87 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 141
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 142 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 197
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 198 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 256
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 257 KLAERTGLSRRVIQ 270
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 143 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 193
>gi|296191171|ref|XP_002743509.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Callithrix jacchus]
Length = 373
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 71 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 130
Query: 60 GSAE 63
+A+
Sbjct: 131 ATAK 134
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 133 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 178
>gi|344278994|ref|XP_003411276.1| PREDICTED: LIM/homeobox protein Lhx8 [Loxodonta africana]
Length = 346
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 131
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 132 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 187
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 188 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 246
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 247 KLAERTGLSRRVIQ 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 183
>gi|50083287|ref|NP_001001933.1| LIM/homeobox protein Lhx8 isoform 1 [Homo sapiens]
gi|114557210|ref|XP_524738.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pan troglodytes]
gi|297664648|ref|XP_002810744.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pongo abelii]
gi|397521070|ref|XP_003830626.1| PREDICTED: LIM/homeobox protein Lhx8 [Pan paniscus]
gi|426330048|ref|XP_004026038.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Gorilla gorilla
gorilla]
gi|296434566|sp|Q68G74.2|LHX8_HUMAN RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8
Length = 356
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 87 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 141
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 142 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 197
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 198 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 256
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 257 KLAERTGLSRRVIQ 270
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 143 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 193
>gi|354497582|ref|XP_003510898.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Cricetulus griseus]
gi|344256661|gb|EGW12765.1| LIM/homeobox protein Lhx3 [Cricetulus griseus]
Length = 403
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 41/195 (21%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C I L + R E +YC+ + R C + ++ P
Sbjct: 47 FILKALDRHWHSKCLKCSDCHIPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 103
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 104 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 139
Query: 127 ES------LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
E YE+ + + KR RT+ QL T+KS +N + P
Sbjct: 140 EDSRLVCKADYETAKQREAEAT-------AKRPRTTITAKQLETLKSAYNTSPKPARHVR 192
Query: 181 KQLAQKTGLSKRVLQ 195
+QL+ +TGL RV+Q
Sbjct: 193 EQLSSETGLDMRVVQ 207
>gi|148676345|gb|EDL08292.1| mCG18748, isoform CRA_b [Mus musculus]
Length = 402
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C + L + R E +YC+ + R C + ++ P
Sbjct: 47 FILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 103
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 104 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 139
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 140 EDSRLVCKADYET-AKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSE 198
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 199 TGLDMRVVQ 207
>gi|58866006|ref|NP_001012219.1| LIM/homeobox protein Lhx8 [Rattus norvegicus]
gi|58476609|gb|AAH90011.1| LIM homeobox 8 [Rattus norvegicus]
Length = 336
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 131
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 132 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNL 187
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 188 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 246
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 247 KLAERTGLSRRVIQ 260
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H++ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCM 183
>gi|391346181|ref|XP_003747357.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Metaseiulus occidentalis]
Length = 434
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55
I+ +ELVM+A D V+HL CF C +CG L +GD + +R+ +YCR +E H
Sbjct: 125 IAPAELVMKALDQVYHLSCFLCCTCGRQLQRGDEYVLRNGRLYCRQDFEKEMH 177
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 139 SPGSGVHSHQRT--KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+PG+G R KR RT Q R K+ F I+Q P K + LA++TGLS R++Q
Sbjct: 201 TPGAGQRPDGRRGPKRPRTILTTAQRRAFKASFEISQKPCRKVREALAKETGLSVRIVQ 259
>gi|308235933|ref|NP_001184116.1| LIM/homeobox protein Lhx3 [Canis lupus familiaris]
gi|300837161|gb|ADK38612.1| LIM homeodomain protein 3 isoform LHX3b [Canis lupus familiaris]
Length = 403
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 159
Query: 60 GSAE 63
+A+
Sbjct: 160 ATAK 163
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C L + R E +YC+ + R C + ++ P
Sbjct: 47 FILKALDRHWHSKCLKCTDCHTPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 103
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 104 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 139
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 140 EDSRLVCKA-DYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSE 198
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 199 TGLDMRVVQ 207
>gi|281354377|gb|EFB29961.1| hypothetical protein PANDA_005098 [Ailuropoda melanoleuca]
Length = 351
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 82 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 136
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 137 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 192
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 251
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 252 KLAERTGLSRRVIQ 265
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 138 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 188
>gi|84490413|ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]
gi|62952823|gb|AAY23167.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|62952825|gb|AAY23168.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|296482071|tpg|DAA24186.1| TPA: LIM homeobox protein 3 [Bos taurus]
Length = 403
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 157
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 162 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>gi|149026292|gb|EDL82535.1| rCG29002 [Rattus norvegicus]
Length = 367
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 108 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 162
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 163 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNL 218
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 219 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 277
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 278 KLAERTGLSRRVIQ 291
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H++ +
Sbjct: 164 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCM 214
>gi|410967547|ref|XP_003990280.1| PREDICTED: LIM/homeobox protein Lhx8 [Felis catus]
Length = 346
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 131
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 132 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 187
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 188 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 246
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 247 KLAERTGLSRRVIQ 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 183
>gi|403301480|ref|XP_003941417.1| PREDICTED: LIM/homeobox protein Lhx3 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 95 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 154
Query: 60 GSAE 63
+A+
Sbjct: 155 ATAK 158
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 157 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
>gi|390466088|ref|XP_002751019.2| PREDICTED: LIM/homeobox protein Lhx8 [Callithrix jacchus]
Length = 346
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 131
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 132 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 187
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 188 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 246
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 247 KLAERTGLSRRVIQ 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 183
>gi|2285798|dbj|BAA21649.1| LIM-homeodomain protein [Mus musculus]
Length = 426
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 167 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 221
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 222 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNL 277
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 278 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 336
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 337 KLAERTGLSRRVIQ 350
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H++ +
Sbjct: 223 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCM 273
>gi|18858977|ref|NP_571293.1| LIM/homeobox protein Lhx5 [Danio rerio]
gi|1708830|sp|P52889.1|LHX5_DANRE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5
gi|840664|gb|AAA99465.1| LIM class homeodomain protein [Danio rerio]
gi|68534671|gb|AAH98523.1| LIM homeobox 5 [Danio rerio]
Length = 399
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 54/202 (26%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G +L+ + + C+ DY
Sbjct: 70 GISPSDLVRRARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK--------EDYLS 121
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ I++ N+ + S T L S
Sbjct: 122 ASAIKE-------------------------------------VNLNSVSSCTDRSL-SP 143
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQR-----TKRM--RTSFKHHQLRTMKSYFNINQ 173
DL ++ + E+ SS ++ TKR RT+ K QL T+K+ F
Sbjct: 144 DLPDQIQDDTKETDNSTSSDKDTNNNENEEQNSCTKRRGPRTTIKAKQLETLKAAFVATP 203
Query: 174 NPDAKDLKQLAQKTGLSKRVLQ 195
P +QLAQ+TGL+ RV+Q
Sbjct: 204 KPTRHIREQLAQETGLNMRVIQ 225
>gi|113195680|ref|NP_034843.2| LIM/homeobox protein Lhx8 [Mus musculus]
gi|341941136|sp|O35652.4|LHX8_MOUSE RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8; AltName: Full=L3; AltName: Full=LIM/homeobox protein
Lhx7; Short=LIM homeobox protein 7
gi|3172042|dbj|BAA28628.1| LIM-homeodomain protein [Mus musculus]
gi|74227158|dbj|BAE38359.1| unnamed protein product [Mus musculus]
gi|116138618|gb|AAI25284.1| LIM homeobox protein 8 [Mus musculus]
gi|116138795|gb|AAI25282.1| LIM homeobox protein 8 [Mus musculus]
gi|148679947|gb|EDL11894.1| LIM homeobox protein 8, isoform CRA_b [Mus musculus]
gi|219519204|gb|AAI44769.1| LIM homeobox protein 8 [Mus musculus]
gi|1587483|prf||2206477A LIM homeo domain transcription factor
Length = 367
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 108 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 162
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 163 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNL 218
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 219 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 277
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 278 KLAERTGLSRRVIQ 291
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H++ +
Sbjct: 164 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCM 214
>gi|126302625|ref|XP_001366249.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Monodelphis
domestica]
Length = 401
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF+C+ C L GD F M D + C+ YE + R+
Sbjct: 99 GIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 155
>gi|297473064|ref|XP_002686347.1| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
gi|296489244|tpg|DAA31357.1| TPA: LIM domain family member (lim-4)-like [Bos taurus]
Length = 346
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 131
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 132 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 187
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 188 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 246
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 247 KLAERTGLSRRVIQ 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 183
>gi|30023847|ref|NP_835258.1| LIM/homeobox protein Lhx3 isoform a [Homo sapiens]
gi|12643415|sp|Q9UBR4.2|LHX3_HUMAN RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3
gi|7110143|gb|AAF36808.1|AF156888_1 LIM homeobox protein 3 isoform a [Homo sapiens]
gi|16565927|gb|AAL26314.1| LIM homeobox protein 3 [Homo sapiens]
gi|119608612|gb|EAW88206.1| LIM homeobox 3, isoform CRA_b [Homo sapiens]
gi|326205254|dbj|BAJ84009.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205256|dbj|BAJ84010.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205264|dbj|BAJ84014.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 397
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 95 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 152
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 157 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
>gi|72535130|ref|NP_001025506.1| LIM/homeobox protein Lhx3 [Gallus gallus]
gi|1708828|sp|P53412.1|LHX3_CHICK RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|531185|gb|AAA62174.1| amino acid feature: LIM1, bp 82 .. 225; amino acid feature: LIM2,
bp 259 .. 414; amino acid feature: homeodomain, bp 457
.. 636 [Gallus gallus]
Length = 395
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 149
>gi|395821904|ref|XP_003784270.1| PREDICTED: LIM/homeobox protein Lhx8 [Otolemur garnettii]
Length = 346
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 131
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 132 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 187
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 188 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 246
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 247 KLAERTGLSRRVIQ 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 183
>gi|368711326|ref|NP_001243043.1| LIM/homeobox protein Lhx8 isoform 2 [Homo sapiens]
gi|395730366|ref|XP_003775714.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pongo abelii]
gi|410033125|ref|XP_003949492.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pan troglodytes]
gi|426330050|ref|XP_004026039.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Gorilla gorilla
gorilla]
gi|441637563|ref|XP_004090066.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Nomascus
leucogenys]
Length = 346
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 131
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 132 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 187
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 188 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 246
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 247 KLAERTGLSRRVIQ 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 183
>gi|296191169|ref|XP_002743508.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Callithrix jacchus]
Length = 397
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 95 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 154
Query: 60 GSAE 63
+A+
Sbjct: 155 ATAK 158
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 157 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
>gi|395506422|ref|XP_003757531.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Sarcophilus
harrisii]
Length = 401
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF+C+ C L GD F M D + C+ YE + R+
Sbjct: 99 GIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 155
>gi|126306172|ref|XP_001363612.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Monodelphis
domestica]
Length = 382
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 75/194 (38%), Gaps = 53/194 (27%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ G
Sbjct: 100 AIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCK------------GD 147
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
E E+ + LS+ SP A+ + +G
Sbjct: 148 YEKEREL---------------------LSLVSPV-------ASDSGKSDDDDSLCKAGH 179
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
GAG G H+R KR RT Q R K+ F ++ P K +
Sbjct: 180 ------------GAGKGVAEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRE 226
Query: 182 QLAQKTGLSKRVLQ 195
LA +TGLS RV+Q
Sbjct: 227 TLAAETGLSVRVVQ 240
>gi|327276679|ref|XP_003223095.1| PREDICTED: LIM/homeobox protein Lhx8-like [Anolis carolinensis]
Length = 379
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 110 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 164
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 165 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 220
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 221 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 280 KLAERTGLSRRVIQ 293
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 166 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 216
>gi|405976917|gb|EKC41395.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 280
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C C L + + ++DE IYCR RDY +E S
Sbjct: 71 CWHTDCLRCCVCCSSLEQEESCFVKDENIYCR--------RDY--ISEFGTKCSKCYRKI 120
Query: 76 QPTT-VQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMESLSYESG 134
Q T V++ R L+ + + R ST E SGD + L + +
Sbjct: 121 QATDWVRRARENVYHLACFACD--------SCQRQLSTGEEFALSGD---QLLCLRHYTS 169
Query: 135 --AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 192
G++ S + S + KR+R+SF QL+ +++ F I NPD+++L ++A G+S+R
Sbjct: 170 LVEGDTDKDSELSSKPKAKRVRSSFTEEQLQILQANFRIESNPDSQELNRIAITAGVSRR 229
Query: 193 VLQ 195
V Q
Sbjct: 230 VAQ 232
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I +++ V RAR+ V+HL CF C SC L+ G+ F + + + C HY L G
Sbjct: 120 IQATDWVRRARENVYHLACFACDSCQRQLSTGEEFALSGDQLLCLRHYTSLVE----GDT 175
Query: 63 EIEQPMSPRP 72
+ + +S +P
Sbjct: 176 DKDSELSSKP 185
>gi|402896085|ref|XP_003911138.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Papio anubis]
Length = 397
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 95 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 152
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 157 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
>gi|345321290|ref|XP_003430404.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Ornithorhynchus
anatinus]
Length = 347
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 78 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 132
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 133 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 188
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 189 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 247
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 248 KLAERTGLSRRVIQ 261
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 134 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 184
>gi|402854983|ref|XP_003892129.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Papio anubis]
Length = 346
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 131
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 132 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 187
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 188 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 246
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 247 KLAERTGLSRRVIQ 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 183
>gi|395506420|ref|XP_003757530.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Sarcophilus
harrisii]
Length = 403
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF+C+ C L GD F M D + C+ YE + R+
Sbjct: 101 GIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 157
>gi|126302627|ref|XP_001366305.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Monodelphis
domestica]
Length = 403
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF+C+ C L GD F M D + C+ YE + R+
Sbjct: 101 GIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 157
>gi|355745377|gb|EHH50002.1| hypothetical protein EGM_00758, partial [Macaca fascicularis]
Length = 320
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ +++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 49 KYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRC 103
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSS 124
W V++ + L+ + ++ + L +H +
Sbjct: 104 GRHIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLD 159
Query: 125 SMESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
+++ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+
Sbjct: 160 NLKR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 218
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 219 LQKLAERTGLSRRVIQ 234
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 107 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 157
>gi|354497584|ref|XP_003510899.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Cricetulus griseus]
Length = 401
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 155
Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C I L + R E +YC+ + R C + ++ P
Sbjct: 45 FILKALDRHWHSKCLKCSDCHIPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 101
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 102 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 137
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 138 EDSRLVCKA-DYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSE 196
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 197 TGLDMRVVQ 205
>gi|114627514|ref|XP_001171072.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan troglodytes]
Length = 397
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 95 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 152
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 157 AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
>gi|403257739|ref|XP_003921454.1| PREDICTED: LIM/homeobox protein Lhx8 [Saimiri boliviensis
boliviensis]
Length = 346
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 131
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 132 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 187
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 188 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 246
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 247 KLAERTGLSRRVIQ 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 183
>gi|326923371|ref|XP_003207910.1| PREDICTED: LIM/homeobox protein Lhx3-like [Meleagris gallopavo]
Length = 399
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 97 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 153
>gi|224058535|ref|XP_002189228.1| PREDICTED: LIM/homeobox protein Lhx8 [Taeniopygia guttata]
Length = 347
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ +++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 76 KYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRC 130
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSS 124
W V++ + L+ + ++ + L +H +
Sbjct: 131 GRHIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLD 186
Query: 125 SMESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
+++ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+
Sbjct: 187 NLKR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 245
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 246 LQKLAERTGLSRRVIQ 261
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 134 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 184
>gi|293345789|ref|XP_002726117.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|293357702|ref|XP_002729190.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|149039301|gb|EDL93521.1| rCG45383, isoform CRA_a [Rattus norvegicus]
Length = 400
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 157
Query: 60 GSAE 63
+A+
Sbjct: 158 ATAK 161
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C + L + R E +YC+ + R C + ++ P
Sbjct: 45 FILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 101
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 102 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 137
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 138 EDSRLVCKADYET-AKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSE 196
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 197 TGLDMRVVQ 205
>gi|780314|gb|AAA73902.1| PLim [Mus musculus]
Length = 400
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 157
Query: 60 GSAE 63
+A+
Sbjct: 158 ATAK 161
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C + L + R E +YC+ + R C + ++ P
Sbjct: 45 FILKALDRHWHSKCLKCSDCHVPLAERCF--SRRESVYCKDDF-FKRFGTKCAACQLGIP 101
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 102 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 137
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 138 EDSRLVCKADYET-AKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSE 196
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 197 TGLDMRVVQ 205
>gi|1708829|sp|P50481.1|LHX3_MOUSE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|575517|gb|AAA62369.1| LIM-homeoprotein [Mus musculus]
gi|187956241|gb|AAI50690.1| Lhx3 protein [Mus musculus]
Length = 400
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 157
Query: 60 GSAE 63
+A+
Sbjct: 158 ATAK 161
Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C + L + R E +YC+ + R C + ++ P
Sbjct: 45 FILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 101
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 102 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 137
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 138 EDSRLVCKADYET-AKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSE 196
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 197 TGLDMRVVQ 205
>gi|387538435|gb|AFJ79494.1| LIM-homeodomain transcription factor islet, partial [Branchiostoma
lanceolatum]
Length = 162
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH----- 55
+G + ++ VMRAR+ ++H+ CF C++C L GD F +R++ ++C+ +E+L
Sbjct: 53 LGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADHEVLERASNNV 112
Query: 56 ----RDYCGSAEIEQPMSPRP 72
R GS ++E M+ RP
Sbjct: 113 DSNGRASLGSTDLE--MATRP 131
>gi|3319763|emb|CAA04012.1| Lhx7 protein [Mus musculus]
Length = 365
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 107 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 161
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 162 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNL 217
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 218 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 276
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 277 KLAERTGLSRRVIQ 290
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H++ +
Sbjct: 163 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCM 213
>gi|345316537|ref|XP_001520166.2| PREDICTED: insulin gene enhancer protein ISL-2-like, partial
[Ornithorhynchus anatinus]
Length = 98
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRAR+ V+H+ CF C C L GD F +RD + CR + +L R G
Sbjct: 10 VGFSSSDLVMRARENVYHIECFRCSVCSRQLLPGDEFSLRDHDLLCRADHSLLLDR---G 66
Query: 61 SAEIEQPMSPRPAPWQPT------TVQKGRP 85
SA+ SPR PT T GRP
Sbjct: 67 SAD-----SPRSPGHLPTSRGLHLTGNCGRP 92
>gi|345321288|ref|XP_001521123.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Ornithorhynchus
anatinus]
Length = 347
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 78 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 132
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 133 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 188
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 189 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 247
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 248 KLAERTGLSRRVIQ 261
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 134 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 184
>gi|148676344|gb|EDL08291.1| mCG18748, isoform CRA_a [Mus musculus]
Length = 400
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAE 157
Query: 60 GSAE 63
+A+
Sbjct: 158 ATAK 161
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 29/189 (15%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++A D +H C C C + L + R E +YC+ + R C + ++ P
Sbjct: 45 FILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDF-FKRFGTKCAACQLGIP 101
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLE-MLHSGDLSSSM 126
PT V + ++D ++ + L +GD M
Sbjct: 102 ---------PTQVVRR---------------AQDFVYHLHCFACVVCKRQLATGDEFYLM 137
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E A + + KR RT+ QL T+KS +N + P +QL+ +
Sbjct: 138 EDSRLVCKADYET-AKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSE 196
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 197 TGLDMRVVQ 205
>gi|47551255|ref|NP_999810.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
gi|33286229|gb|AAQ01662.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
Length = 480
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY
Sbjct: 70 GILPSDLVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDE-------NQFICKEDYLTK 122
Query: 62 AEIEQPMSP------RPAPWQPTTVQKGRPRKRKLSVDSP-----TPPSEDINANVMRIP 110
++ +P P +P T + S + S+ I+ ++ P
Sbjct: 123 CQLRRPELPDNDHFNKPPGSCNTALSSHDSSSPPESPSTEDMSLLEAESDAISPSLGVTP 182
Query: 111 STTLEMLHSGDLSSSM-------ESLSYESGAGN----SSPGSGVHSHQRTKRMRTSFKH 159
+TT + L +S M + ++E+G N ++ G V +R + RT+ K
Sbjct: 183 ATTPDDLDRVKDASIMNNNNNNSNNNNHEAGLENRENENTAGIPVSGAKR-RGPRTTIKA 241
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 242 KQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 277
>gi|432856535|ref|XP_004068463.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 348
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 71/195 (36%), Gaps = 59/195 (30%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC-RPHYEILRHRDYCG 60
IS SELVMRA VFHL CFTC C L GD ++D + C R Y L+
Sbjct: 81 AISPSELVMRAGAAVFHLSCFTCSVCFHHLKTGDRCILQDGRLLCAREDYHQLQ------ 134
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+PPS DI SG
Sbjct: 135 ----------------------------------ASPPSSDIG--------------KSG 146
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
D S G S ++R KR RT Q RT K+ F ++ P K
Sbjct: 147 DDEEEEPSAKVMDKPGRSHD----QENKRPKRPRTILTTQQRRTFKASFEVSSKPCRKVR 202
Query: 181 KQLAQKTGLSKRVLQ 195
+ LA +TGLS RV+Q
Sbjct: 203 ETLAAETGLSVRVVQ 217
>gi|74213688|dbj|BAE35644.1| unnamed protein product [Mus musculus]
Length = 367
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 108 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 162
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 163 HIHSIDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNL 218
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 219 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 277
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 278 KLAERTGLSRRVIQ 291
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S + V RA+ V+HL CF C SC L+ G+ F + +E + CR H++ +
Sbjct: 164 IHSIDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCM 214
>gi|167859076|gb|ACA04473.1| Lim1 [Strongylocentrotus purpuratus]
Length = 480
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY
Sbjct: 70 GILPSDLVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDE-------NQFICKEDYLTK 122
Query: 62 AEIEQPMSP------RPAPWQPTTVQKGRPRKRKLSVDSP-----TPPSEDINANVMRIP 110
++ +P P +P T + S + S+ I+ ++ P
Sbjct: 123 CQLRRPELPDNDHFNKPPGSCNTALSSHDSSSPPESPSTEDMSLLEAESDAISPSLGVTP 182
Query: 111 STTLEMLHSGDLSSSM-------ESLSYESGAGN----SSPGSGVHSHQRTKRMRTSFKH 159
+TT + L +S M + ++E+G N ++ G V +R + RT+ K
Sbjct: 183 ATTPDDLDRVKDASIMNNNNNNSNNNNHEAGLENRENENTAGIPVSGAKR-RGPRTTIKA 241
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 242 KQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 277
>gi|444727546|gb|ELW68032.1| LIM/homeobox protein Lhx8 [Tupaia chinensis]
Length = 348
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ +++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 77 KYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRC 131
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSS 124
W V++ + L+ + ++ + L +H +
Sbjct: 132 GRHIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLD 187
Query: 125 SMESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
+++ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+
Sbjct: 188 NLKR-EVENGNGISVEGALLTDQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 246
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 247 LQKLAERTGLSRRVIQ 262
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 135 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 185
>gi|444521209|gb|ELV13150.1| LIM/homeobox protein Lhx3 [Tupaia chinensis]
Length = 290
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + RD
Sbjct: 96 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRD 153
>gi|371573882|gb|AEX38311.1| islet [Mnemiopsis leidyi]
Length = 321
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 67/194 (34%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
G SS++ VMR R+ +FHL CF C C L G+ F + E + CG+
Sbjct: 78 GFSSNDFVMRVRENIFHLSCFRCNMCSRQLVPGEEFALLPEGLI-------------CGT 124
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+Q P P +P + + +PR
Sbjct: 125 HIKQQHHQQAPLPNEP--LPESKPR----------------------------------- 147
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
S +G Q+T R+RT QLR +++ +N N PDA +
Sbjct: 148 -----------------STNTGSSGEQKTTRVRTVLNDRQLRILRTCYNNNPRPDALMKE 190
Query: 182 QLAQKTGLSKRVLQ 195
Q+ + TGLS RV++
Sbjct: 191 QMTKLTGLSARVIR 204
>gi|148225925|ref|NP_001084128.1| LIM/homeobox protein Lhx1 [Xenopus laevis]
gi|267419|sp|P29674.1|LHX1_XENLA RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Xlim1;
Short=x-Lhx1; Short=xLIM-1
gi|64830|emb|CAA45353.1| homeobox protein [Xenopus laevis]
gi|213623130|gb|AAI69338.1| Homeobox protein [Xenopus laevis]
gi|213623134|gb|AAI69340.1| Homeobox protein [Xenopus laevis]
Length = 403
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS S+LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ Y L + +
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY--LNNNNAAK 126
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+V P LS +S P +D
Sbjct: 127 ENSF-------------ISVTGSDP---SLSPESQDPLQDDAK----------------- 153
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
S ++S + N + + + +R R T+ K QL T+K+ F P
Sbjct: 154 --DSESANVSDKEAGINENDDQNLGAKRRGPR--TTIKAKQLETLKAAFAATPKPTRHIR 209
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 210 EQLAQETGLNMRVIQ 224
>gi|18858973|ref|NP_571291.1| LIM/homeobox protein Lhx1 [Danio rerio]
gi|2497670|sp|Q90476.1|LHX1_DANRE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|577525|gb|AAA92157.1| homeodomain protein [Danio rerio]
gi|190336961|gb|AAI62664.1| LIM homeobox 1a [Danio rerio]
gi|190339482|gb|AAI62396.1| LIM homeobox 1a [Danio rerio]
Length = 405
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS ++LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ Y
Sbjct: 69 GISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDY---------- 118
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ G+ LSV + + PS + + + L
Sbjct: 119 -----------------LSNTNGK-DSNLLSVTACSDPS---------LSPDSQDQLQDD 151
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + +LS + N + + +R RT+ K QL T+K+ F P
Sbjct: 152 VKDAEIANLSDKETGNNENDDQNLGGKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 209
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 210 EQLAQETGLNMRVIQ 224
>gi|82621617|gb|ABB86480.1| LHX6/8-LIM class homeobox protein, partial [Nematostella vectensis]
gi|110339153|gb|ABG67840.1| LHX67, partial [Nematostella vectensis]
Length = 60
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR+RT+F QL+ +++ FNI+ NPD +DL+++AQ TGLSKRV Q
Sbjct: 2 KRVRTTFTEDQLQILQANFNIDSNPDGQDLERIAQLTGLSKRVTQ 46
>gi|18858975|ref|NP_571283.1| LIM/homeobox protein Lhx3 [Danio rerio]
gi|2497671|sp|Q90421.1|LHX3_DANRE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|1000342|gb|AAA76714.1| LIM homeobox protein [Danio rerio]
Length = 398
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQRE 149
>gi|156398319|ref|XP_001638136.1| predicted protein [Nematostella vectensis]
gi|156225254|gb|EDO46073.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ S ++ VMRAR+ ++H+ CF C++C L GD F +R++ ++C+ +EI+
Sbjct: 84 LNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALREDGLFCKADHEIV 136
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
R R+RT QL T+++ +N N PDA +QL + TGLS RV++
Sbjct: 179 RPTRVRTVLNEKQLHTLRTCYNANPRPDAMMKEQLVEMTGLSPRVIR 225
>gi|397492168|ref|XP_003817000.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan paniscus]
Length = 390
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHR 56
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R
Sbjct: 84 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQR 140
>gi|94957756|ref|NP_001035556.1| LIM/homeobox protein Lhx8 [Gallus gallus]
gi|71800649|gb|AAZ41374.1| LIM homeodomain protein [Gallus gallus]
Length = 347
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 17/196 (8%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ +++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 76 KYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRC 130
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSS 124
W V++ + L+ + ++ + L +H +
Sbjct: 131 GRHIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLD 186
Query: 125 SMESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
+++ E+G G S G+ V+ + KR RTSF QL+ M + F + NPDA+
Sbjct: 187 NLKR-EVENGNGVSMEGALLTEQDVNHPKPAKRARTSFTADQLQVMXAQFAQDNNPDAQT 245
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 246 LQKLAERTGLSRRVIQ 261
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 134 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 184
>gi|170577993|ref|XP_001894217.1| Homeobox domain containing protein [Brugia malayi]
gi|158599257|gb|EDP36927.1| Homeobox domain containing protein [Brugia malayi]
Length = 452
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+TKR+RT+F QL ++++F I+ NPD DL+++A TGLSKRV Q
Sbjct: 330 KTKRVRTTFAEEQLAVLQTHFQIDSNPDGADLERIATMTGLSKRVTQ 376
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I +++ V RAR+ V+HL CF C C L+ G+ F ++D + C+ HY
Sbjct: 269 IHATDWVRRARNFVYHLACFACDQCKRQLSTGEEFALQDCRLLCKQHY 316
>gi|190336903|gb|AAI62627.1| LIM homeobox 3 [Danio rerio]
Length = 398
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQRE 149
>gi|397492170|ref|XP_003817001.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Pan paniscus]
Length = 377
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHR 56
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R
Sbjct: 71 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQR 127
>gi|348505012|ref|XP_003440055.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 338
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 21/196 (10%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L ++++ ++C+ Y R+ +C
Sbjct: 67 LLKVNDLCWHVRCLSCSVCQTSLGSHTSCYIKEKEVFCKLDY-FRRYGTWCACC----GR 121
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
+ W V++ + L+ + ++ + L +H + +
Sbjct: 122 NIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEGKVLCRVHYDCM---L 174
Query: 127 ESLSYESGAGNSSPGSG-------VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
++L GNS G ++ + +KR RTSF QL+ M++ F + NPDA+
Sbjct: 175 DNLKRAVEKGNSVNMEGAVPTEQEINQPKPSKRARTSFTADQLQVMQAQFAQDNNPDAQT 234
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 235 LQKLAEQTGLSRRVIQ 250
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + + + CR HY+ +
Sbjct: 122 NIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEGKVLCRVHYDCM 173
>gi|301763072|ref|XP_002916962.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx8-like
[Ailuropoda melanoleuca]
Length = 574
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 315 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 369
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 370 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 425
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 426 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 484
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 485 KLAERTGLSRRVIQ 498
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 371 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 421
>gi|410921222|ref|XP_003974082.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
Length = 324
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 21/196 (10%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L ++++ ++C+ Y R+ +C
Sbjct: 67 LLKVNDLCWHVRCLSCSVCHTSLGSHTSCYIKEKEVFCKMDY-FRRYGTWCACC----GR 121
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
+ W V++ + L+ + ++ + L +H + +
Sbjct: 122 NIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM---L 174
Query: 127 ESLSYESGAGNSSPGSG-------VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
++L GNS G ++ + +KR RTSF QL+ M++ F + NPDA+
Sbjct: 175 DNLKRAVEKGNSVNMEGAVPTEQEINQPKPSKRARTSFTADQLQVMQAQFAQDNNPDAQT 234
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 235 LQKLAEQTGLSRRVIQ 250
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 123 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 173
>gi|426363578|ref|XP_004048915.1| PREDICTED: LIM/homeobox protein Lhx3 [Gorilla gorilla gorilla]
Length = 304
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC 59
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-- 157
Query: 60 GSAEIEQPMSPRPAPWQPTT 79
A ++P P A P
Sbjct: 158 AEATAKRPHEPSLAEMGPAN 177
>gi|410930167|ref|XP_003978470.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 408
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 38/195 (19%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GIS ++LV RAR VFHL+CFTC+ C L+ G+ + DE + C+ DY
Sbjct: 69 GISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK--------EDYLS 120
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
++ + LSV + + PS ++ L+
Sbjct: 121 NSNGKD--------------------TNLLSVTTCSDPSLSPDSQDQLQDDVVLK----- 155
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + +LS + N + + +R RT+ K QL T+K+ F P
Sbjct: 156 --DTEIAALSDKETVNNENDDQNLGGKRRGP--RTTIKAKQLETLKAAFAATPKPTRHIR 211
Query: 181 KQLAQKTGLSKRVLQ 195
+QLAQ+TGL+ RV+Q
Sbjct: 212 EQLAQETGLNMRVIQ 226
>gi|348535047|ref|XP_003455013.1| PREDICTED: LIM/homeobox protein Lhx3-like [Oreochromis niloticus]
Length = 400
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQRE 149
>gi|307184076|gb|EFN70611.1| Insulin gene enhancer protein ISL-1 [Camponotus floridanus]
Length = 408
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 27/193 (13%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
S ++ VMRA+ ++H+ CF C +C L GD F +R + ++CR +++L +C A
Sbjct: 74 FSKNDYVMRAKTKIYHVECFRCCACMRRLETGDEFALRQDGLFCRHDHDVLEGGKHCTGA 133
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
G P + S T + ++ N M SG
Sbjct: 134 -------------------AGIPGSENNNNASLTNNNHHLHPN-------DGSMSDSGSE 167
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
S S ++ G + T+ +RT QL T+++ + N PDA +Q
Sbjct: 168 SGSHKAGVGGVRGSGGHKSGGGSDGKPTR-VRTVLNEKQLHTLRTCYAANPRPDALMKEQ 226
Query: 183 LAQKTGLSKRVLQ 195
L + TGLS RV++
Sbjct: 227 LVEMTGLSPRVIR 239
>gi|829167|emb|CAA38240.1| lin-11 protein [Caenorhabditis elegans]
gi|226840|prf||1608206A lin-11 gene
Length = 382
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 44/195 (22%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCGS 61
+ +LV RARD VFH+ CF C C LL GD L+ M C+ ++
Sbjct: 111 LEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQ---------- 160
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
T + P S+ P + N++V D
Sbjct: 161 ----------------TATKTSTP----TSIHRPVSNGSECNSDV------------EED 188
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRM-RTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + + + G G+ + S+ +R RT+ K QL T+K+ F P
Sbjct: 189 NVDACDEVGLDDGEGDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIR 248
Query: 181 KQLAQKTGLSKRVLQ 195
+QLA +TGL+ RV+Q
Sbjct: 249 EQLAAETGLNMRVIQ 263
>gi|348586764|ref|XP_003479138.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cavia porcellus]
Length = 485
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 17/196 (8%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ +++ DL +H+ C +C C L + ++D+ I+C+ Y R+ C
Sbjct: 225 KYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY-FRRYGTRCSRCG--- 280
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSS 124
W V++ + L+ + ++ + L +H +
Sbjct: 281 -RHIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLD 335
Query: 125 SMESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
+++ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+
Sbjct: 336 NLKR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 394
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 395 LQKLAERTGLSRRVIQ 410
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 283 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 333
>gi|348531406|ref|XP_003453200.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 386
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I SS+ V RAR FHL CF+C SC L+ G+ G+ + ++CRPHY+I+
Sbjct: 173 NIHSSDWVRRARGSTFHLACFSCTSCKRQLSTGEECGLLENRVFCRPHYDIM 224
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L +H+ C +C C L + +RD+ ++C+ Y R Y G+
Sbjct: 118 LLKVNNLCWHVRCLSCSVCKTSLGRHVSCYIRDKEVFCKLDY----FRRY-GTRCARCGR 172
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTP------PSEDINANVMRIPSTTLEMLHSGDL 122
+ + W V++ R L+ S T E+ R+ + +L
Sbjct: 173 NIHSSDW----VRRARGSTFHLACFSCTSCKRQLSTGEECGLLENRVFCRPHYDIMIENL 228
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ E+ +G G+ S + + KR RTSF QL+ M++ F + NPDA+ L++
Sbjct: 229 KRAKENSECMNGQGSDLNYSKLILPKPAKRARTSFTVDQLQVMQTQFAKDNNPDAQTLQK 288
Query: 183 LAQKTGLSKRVLQ 195
LA +TGLS+RV+Q
Sbjct: 289 LADRTGLSRRVIQ 301
>gi|170592735|ref|XP_001901120.1| Homeobox domain containing protein [Brugia malayi]
gi|158591187|gb|EDP29800.1| Homeobox domain containing protein [Brugia malayi]
Length = 212
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 50/195 (25%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD--LFGMRDEMIYCRPHYEILRHRDYCG 60
IS +++VM+ R L +H CF+C SC LT G+ +F R++ + CR C
Sbjct: 20 ISKTDMVMKIRTLTYHAACFSCSSCEKKLTVGEEFVFREREDDVLCRVD---------CD 70
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ IEQP S + + R+ + D T S D N M
Sbjct: 71 ATNIEQPSSIKTDIY---------GREDEDGWDGSTLTSLD---NQM------------- 105
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
SS LS S + S R+RT QL T+K+ + N PDA
Sbjct: 106 ---SSTPPLSLRSPKSDEST-----------RVRTVLNEKQLMTLKACYAANARPDAMMK 151
Query: 181 KQLAQKTGLSKRVLQ 195
+ L + TGLS RV++
Sbjct: 152 EHLVEMTGLSPRVIR 166
>gi|241999336|ref|XP_002434311.1| lhx3, putative [Ixodes scapularis]
gi|215496070|gb|EEC05711.1| lhx3, putative [Ixodes scapularis]
Length = 252
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 33 LGIPPTQVVRRAQDNVYHLHCFACILCKRQLNTGDEFYLMEDNKLVCKADYEAAKARE 90
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ QL T+KS +N + P +QL+Q TGL RV+Q
Sbjct: 93 TKRPRTTITAKQLETLKSAYNNSPKPARHVREQLSQDTGLDMRVVQ 138
>gi|402593440|gb|EJW87367.1| homeobox domain-containing protein [Wuchereria bancrofti]
Length = 197
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 50/195 (25%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD--LFGMRDEMIYCRPHYEILRHRDYCG 60
IS +++VM+ R L +H CF+C SC LT G+ +F R++ + CR C
Sbjct: 20 ISKTDMVMKIRTLTYHAACFSCSSCEKKLTVGEEFVFREREDDVLCRVD---------CD 70
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
+ IEQP S + + R+ + D T S D N M
Sbjct: 71 TTNIEQPSSIKTDIY---------GREDEDGWDGSTLTSLD---NQM------------- 105
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
SS LS S + S R+RT QL T+K+ + N PDA
Sbjct: 106 ---SSTPPLSLRSPKSDEST-----------RVRTVLNEKQLMTLKACYAANARPDAMMK 151
Query: 181 KQLAQKTGLSKRVLQ 195
+ L + TGLS RV++
Sbjct: 152 EHLVEMTGLSPRVIR 166
>gi|397492166|ref|XP_003816999.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan paniscus]
Length = 401
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHR 56
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R
Sbjct: 95 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQR 151
>gi|426218775|ref|XP_004003612.1| PREDICTED: LIM/homeobox protein Lhx8 [Ovis aries]
Length = 442
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 173 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRCGR 227
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
W V++ + L+ + ++ + L +H + ++
Sbjct: 228 HIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 283
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 284 KR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 342
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 343 KLAERTGLSRRVIQ 356
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 229 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 279
>gi|17508255|ref|NP_492696.1| Protein LIN-11 [Caenorhabditis elegans]
gi|2506818|sp|P20154.2|LIN11_CAEEL RecName: Full=Protein lin-11; AltName: Full=Abnormal cell lineage
protein 11
gi|3881427|emb|CAB02310.1| Protein LIN-11 [Caenorhabditis elegans]
Length = 405
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 44/195 (22%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCGS 61
+ +LV RARD VFH+ CF C C LL GD L+ M C+ ++
Sbjct: 134 LEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQ---------- 183
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
T + P S+ P + N++V D
Sbjct: 184 ----------------TATKTSTP----TSIHRPVSNGSECNSDV------------EED 211
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRM-RTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + + + G G+ + S+ +R RT+ K QL T+K+ F P
Sbjct: 212 NVDACDEVGLDDGEGDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIR 271
Query: 181 KQLAQKTGLSKRVLQ 195
+QLA +TGL+ RV+Q
Sbjct: 272 EQLAAETGLNMRVIQ 286
>gi|312075111|ref|XP_003140272.1| hypothetical protein LOAG_04687 [Loa loa]
Length = 136
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+TKR+RT+F QL ++++F I+ NPD DL+++A TGLSKRV Q
Sbjct: 14 KTKRVRTTFAEEQLAVLQTHFQIDSNPDGADLERIATMTGLSKRVTQ 60
>gi|391340116|ref|XP_003744391.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Metaseiulus
occidentalis]
Length = 460
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ S S+ VMRAR +FH+ CF CI+C L GD F +R++ ++C+ +++L
Sbjct: 171 LSFSRSDFVMRARGKIFHIDCFRCIACSRQLIPGDEFAIREDELFCKADHDVL 223
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 142 SGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G + R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 266 GGRGGEHKPTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 319
>gi|390335971|ref|XP_780701.3| PREDICTED: LIM/homeobox protein Lhx3-like [Strongylocentrotus
purpuratus]
Length = 545
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI+ +E+V RA D V+HLHCF CI C L+ GD F M D + C+ YE + R+
Sbjct: 212 GIAPTEIVRRALDNVYHLHCFCCIICTRQLSTGDEFFLMTDNKLVCKQDYEAAKARE 268
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+K+ ++ + P +QLAQ+TGL RV+Q
Sbjct: 275 NKRPRTTITAKQLETLKTAYSNSPKPARHVREQLAQETGLDMRVVQ 320
>gi|171544941|ref|NP_001116387.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
gi|157410515|gb|ABV53980.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
Length = 401
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 96 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQRE 152
>gi|344254045|gb|EGW10149.1| LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 397
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 61/195 (31%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYCG 60
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + G
Sbjct: 75 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNGCLG 134
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
W GR R+RK PS AN +++ T +
Sbjct: 135 --------------W-------GR-RQRK--------PSCFSWANSIKVVFTVDDS---- 160
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
E+GA KR RT+ QL T+K+ + + P
Sbjct: 161 -----------EAGA---------------KRPRTTITAKQLETLKNAYKNSPKPARHVR 194
Query: 181 KQLAQKTGLSKRVLQ 195
+QL+ +TGL RV+Q
Sbjct: 195 EQLSSETGLDMRVVQ 209
>gi|133892446|ref|NP_001076595.1| LIM/homeobox protein Lhx6 isoform 3 [Mus musculus]
gi|341940899|sp|Q9R1R0.2|LHX6_MOUSE RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|40787713|gb|AAH65077.1| Lhx6 protein [Mus musculus]
Length = 363
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|51571915|ref|NP_001004015.1| LIM/homeobox protein Lhx6 [Danio rerio]
gi|50953777|gb|AAT90495.1| Lhx6 [Danio rerio]
gi|190336767|gb|AAI62225.1| LIM homeobox 6 [Danio rerio]
Length = 375
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + ++++ I+C+ Y R C +
Sbjct: 109 LLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 167
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 168 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMVENL 219
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + ESG+G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 220 KRAA-ESGSGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 277
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 278 KLADMTGLSRRVIQ 291
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 165 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 215
>gi|431898999|gb|ELK07369.1| LIM/homeobox protein Lhx3 [Pteropus alecto]
Length = 357
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHR 56
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQR 154
>gi|344241263|gb|EGV97366.1| LIM/homeobox protein Lhx6 [Cricetulus griseus]
Length = 363
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|211971017|ref|NP_001130018.1| LIM/homeobox protein Lhx3 [Salmo salar]
gi|157412002|gb|ABV54627.1| Lim homeobox protein 3 [Salmo salar]
Length = 395
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQRE 149
>gi|157412000|gb|ABV54626.1| Lim homeobox protein 3 splice variant [Salmo salar]
Length = 379
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 77 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQRE 133
>gi|133892051|ref|NP_001076596.1| LIM/homeobox protein Lhx6 isoform 4 [Mus musculus]
gi|148676720|gb|EDL08667.1| LIM homeobox protein 6, isoform CRA_a [Mus musculus]
Length = 348
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|301611522|ref|XP_002935283.1| PREDICTED: LIM/homeobox protein Lhx3-like [Xenopus (Silurana)
tropicalis]
Length = 362
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYCG 60
GI +++V RA++ V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 60 GIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKGDYETAKQREAES 119
Query: 61 SAE 63
+A+
Sbjct: 120 TAK 122
>gi|345802215|ref|XP_547330.3| PREDICTED: LIM/homeobox protein Lhx8 [Canis lupus familiaris]
Length = 462
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ +++ DL +H+ C +C C L + ++D+ I+C+ Y R Y G+
Sbjct: 201 KYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY----FRRY-GTRCSRC 255
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSS 124
W V++ + L+ + ++ + L +H +
Sbjct: 256 GRHIHSTDW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLD 311
Query: 125 SMESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKD 179
+++ E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+
Sbjct: 312 NLKR-EVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 370
Query: 180 LKQLAQKTGLSKRVLQ 195
L++LA++TGLS+RV+Q
Sbjct: 371 LQKLAERTGLSRRVIQ 386
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 259 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 309
>gi|348525932|ref|XP_003450475.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 399
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 42/195 (21%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GI S+LV RA+ VFHL+CFTC+ C L+ G+ + DE + C+ YE +D
Sbjct: 69 GILPSDLVRRAKSKVFHLNCFTCVMCNKQLSTGEELYILDEFKFVCKEDYENNSGKD--- 125
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
T+ LSV + + PS ++ + E H
Sbjct: 126 ------------------TIL--------LSVTTCSDPSLSPDSQDPQDDGKDSENGHLS 159
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
D + +S G + + RT+ K QL T+K+ F P
Sbjct: 160 DKDTCSNENDEQSAVG------------KRRGPRTTIKAKQLETLKAAFAATPKPTRHIR 207
Query: 181 KQLAQKTGLSKRVLQ 195
+QL+++TGL+ RV+Q
Sbjct: 208 EQLSRETGLNMRVIQ 222
>gi|410979495|ref|XP_003996119.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Felis
catus]
Length = 309
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHR 56
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFSFMEDSRLVCKADYETAKQR 154
>gi|148676722|gb|EDL08669.1| LIM homeobox protein 6, isoform CRA_c [Mus musculus]
Length = 395
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 114 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 172
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 173 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 224
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 225 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 282
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 283 KLADMTGLSRRVIQ 296
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 170 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 220
>gi|281494552|gb|ADA72028.1| Isl1/2A [Lethenteron camtschaticum]
Length = 138
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+G S ++ VMR R VFHL CF C++C L GD F +R++ ++CR +E+L
Sbjct: 72 VGFSKTDFVMRVRTQVFHLECFRCVACSRQLIPGDEFALREDGLFCRADHELL 124
>gi|410903460|ref|XP_003965211.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Takifugu
rubripes]
Length = 399
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQRE 149
>gi|410903462|ref|XP_003965212.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Takifugu
rubripes]
Length = 406
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 100 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQRE 156
>gi|148676723|gb|EDL08670.1| LIM homeobox protein 6, isoform CRA_d [Mus musculus]
Length = 388
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 107 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 165
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 166 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 217
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 218 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 275
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 276 KLADMTGLSRRVIQ 289
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 163 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 213
>gi|157821727|ref|NP_001101307.1| LIM/homeobox protein Lhx6 [Rattus norvegicus]
gi|149038910|gb|EDL93130.1| LIM homeobox protein 6 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 388
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 107 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 165
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 166 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 217
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 218 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 275
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 276 KLADMTGLSRRVIQ 289
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 163 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 213
>gi|148676721|gb|EDL08668.1| LIM homeobox protein 6, isoform CRA_b [Mus musculus]
Length = 380
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 114 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 172
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 173 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 224
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 225 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 282
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 283 KLADMTGLSRRVIQ 296
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 170 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 220
>gi|10257388|dbj|BAB13725.1| transcription factor HpLim1 [Hemicentrotus pulcherrimus]
Length = 480
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
GI S+LV RAR VFHL+CFTC+ C L+ G+ + DE + + DY
Sbjct: 70 GILPSDLVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDE-------NQFICKEDYLTK 122
Query: 62 AEIEQPMSP------RPAPWQPTTVQKGRPRKRKLSVDSP-----TPPSEDINANVMRIP 110
++ +P P +P T + S + ++ I+ ++ P
Sbjct: 123 CQLRRPELPDNDHFNKPPGSCNTALSSHDSSSPPESPSTEDMSLLEAENDAISPSLGVTP 182
Query: 111 STTLEMLHSGDLSSSM-------ESLSYESGAGN----SSPGSGVHSHQRTKRMRTSFKH 159
+TT + L +S M + ++E+G N ++ G V +R + RT+ K
Sbjct: 183 ATTPDDLDRVKDASIMNNNNNNSNNNNHEAGLENRENENTAGIPVSGAKR-RGPRTTIKA 241
Query: 160 HQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 242 KQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 277
>gi|354500655|ref|XP_003512414.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Cricetulus griseus]
Length = 366
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|410903464|ref|XP_003965213.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 3 [Takifugu
rubripes]
Length = 390
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 84 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQRE 140
>gi|307195463|gb|EFN77349.1| LIM/homeobox protein Awh [Harpegnathos saltator]
Length = 142
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+TKR+RT+F QL +++ F ++ NPD +DL+++AQ TGLSKRV Q
Sbjct: 7 KTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAQVTGLSKRVTQ 53
>gi|354500651|ref|XP_003512412.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Cricetulus griseus]
Length = 392
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|133891794|ref|NP_032526.2| LIM/homeobox protein Lhx6 isoform 1 [Mus musculus]
Length = 392
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|229619792|dbj|BAH58094.1| LIM homeobox protein 3 [Hemicentrotus pulcherrimus]
Length = 485
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI+ +E+V RA D V+HLHCF CI C L+ GD F M D + C+ YE + R+
Sbjct: 152 GIAPTEIVRRALDNVYHLHCFCCIICTRQLSTGDEFFLMTDNKLVCKQDYEAAKARE 208
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+K+ ++ + P +QLAQ+TGL RV+Q
Sbjct: 215 NKRPRTTITAKQLETLKTAYSNSPKPARHVREQLAQETGLDMRVVQ 260
>gi|51571947|ref|NP_001003980.1| LIM/homeobox protein Lhx8 [Danio rerio]
gi|50953779|gb|AAT90496.1| Lhx7 [Danio rerio]
gi|108742021|gb|AAI17602.1| LIM homeobox 8 [Danio rerio]
Length = 332
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 17/194 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ D+ +H+ C +C C L + ++++ I+C+ Y R Y G+
Sbjct: 63 LLKVNDMCWHVRCLSCSVCQTSLGRHISCYIKEKEIFCKLDY----FRKY-GTRCAHCGR 117
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
+ W V++ + L+ + ++ + L +H + ++
Sbjct: 118 NIHSNDW----VRRAKGNTYHLACFACFSCKRQLSTGEEFALVDERVLCRVHYDCMLDNL 173
Query: 127 ESLSYESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V+ + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 174 KR-AMENGKGVNVEGAVPSEQEVNQPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 232
Query: 182 QLAQKTGLSKRVLQ 195
+LA++TGLS+RV+Q
Sbjct: 233 KLAERTGLSRRVIQ 246
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ +HL CF C SC L+ G+ F + DE + CR HY+ +
Sbjct: 118 NIHSNDWVRRAKGNTYHLACFACFSCKRQLSTGEEFALVDERVLCRVHYDCM 169
>gi|149038911|gb|EDL93131.1| LIM homeobox protein 6 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 373
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 107 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 165
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 166 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 217
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 218 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 275
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 276 KLADMTGLSRRVIQ 289
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 163 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 213
>gi|47218680|emb|CAG12404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 444
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 70 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYETAKQRE 126
>gi|354500653|ref|XP_003512413.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Cricetulus griseus]
Length = 377
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|332023208|gb|EGI63464.1| Insulin gene enhancer protein ISL-1 [Acromyrmex echinatior]
Length = 432
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 27/193 (13%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
S ++ VMRA+ ++H+ CF C +C L GD F +R + ++CR +++L +C
Sbjct: 98 FSKNDYVMRAKTKIYHVECFRCCACSRRLETGDEFALRQDGLFCRLDHDVLEGGKHC--- 154
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
T G P + S T + ++ N M SG
Sbjct: 155 ----------------TGGVGIPGSENNNNASLTNNNHHLHPN-------DGSMSDSGSE 191
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
S S ++ G + T+ +RT QL T+++ + N PDA +Q
Sbjct: 192 SGSHKAGVGGVRGSGGHKSGGGSDGKPTR-VRTVLNEKQLHTLRTCYAANPRPDALMKEQ 250
Query: 183 LAQKTGLSKRVLQ 195
L + TGLS RV++
Sbjct: 251 LVEMTGLSPRVIR 263
>gi|133893073|ref|NP_001076594.1| LIM/homeobox protein Lhx6 isoform 2 [Mus musculus]
Length = 377
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|71361857|gb|AAZ30032.1| LIM homeodomain protein, partial [Gallus gallus]
Length = 235
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + ++++ I+C+ Y R C
Sbjct: 42 LLKVNNLIWHVRCLECSVCRTSLRQQHSCYIKNKEIFCKMDY-FSRFGTKCARC----GR 96
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
+ W V++ R L+ + ++ + L +H + ++
Sbjct: 97 QIYASDW----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 152
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 153 KRAA-ENGNGITLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 210
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 211 KLADMTGLSRRVIQ 224
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 98 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 148
>gi|18308156|gb|AAL67847.1|AF461699_1 LIM homeobox protein [Gallus gallus]
Length = 214
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 149
>gi|148232304|ref|NP_001081623.1| LIM/homeobox protein Lhx3 [Xenopus laevis]
gi|547856|sp|P36200.1|LHX3_XENLA RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; Short=xLIM-3
gi|407072|emb|CAA80402.1| Xlim-3 [Xenopus laevis]
gi|213623314|gb|AAI69580.1| Xlim-3 protein [Xenopus laevis]
Length = 395
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA++ V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 149
>gi|307209962|gb|EFN86739.1| Insulin gene enhancer protein ISL-1 [Harpegnathos saltator]
Length = 407
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 27/193 (13%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
S ++ VMRA+ ++H+ CF C +C L GD F +R + ++CR +++L +C A
Sbjct: 74 FSKNDYVMRAKTKIYHVECFRCCACMRRLETGDEFALRQDGLFCRHDHDVLEGGKHCTGA 133
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
G P + S T + ++ N M SG
Sbjct: 134 -------------------TGIPGSENNNNASLTNNNHHLHPN-------DGSMSDSGSE 167
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
S S ++ S G + T+ +RT QL T+++ + N PDA +Q
Sbjct: 168 SGSHKAGVGGVRGSGSHKSGGGSDGKPTR-VRTVLNEKQLHTLRTCYAANPRPDALMKEQ 226
Query: 183 LAQKTGLSKRVLQ 195
L + TGLS RV++
Sbjct: 227 LVEMTGLSPRVIR 239
>gi|393905176|gb|EFO23802.2| hypothetical protein LOAG_04687 [Loa loa]
Length = 205
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+TKR+RT+F QL ++++F I+ NPD DL+++A TGLSKRV Q
Sbjct: 83 KTKRVRTTFAEEQLAVLQTHFQIDSNPDGADLERIATMTGLSKRVTQ 129
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I +++ V RAR+ V+HL CF C C L+ G+ F ++D + C+ HY
Sbjct: 22 IHATDWVRRARNFVYHLACFACDQCKRQLSTGEEFALQDCRLLCKQHY 69
>gi|432899669|ref|XP_004076609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oryzias latipes]
Length = 402
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 42/195 (21%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHYEILRHRDYCG 60
GI S+LV RA+ VFHL+CFTC+ C L+ G+ + DE + C+ Y+ +D
Sbjct: 69 GILPSDLVRRAKSKVFHLNCFTCVMCNKQLSTGEELYILDEFKFVCKEDYQNSNGKD--- 125
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG 120
T+ LSV + + PS ++ + E H
Sbjct: 126 ------------------TIL--------LSVTTCSEPSLSPDSQDPQDDGKDSESGHLS 159
Query: 121 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
D + +S G + + RT+ K QL T+K+ F P
Sbjct: 160 DKDACGNDNDEQSAVG------------KRRGPRTTIKAKQLETLKAAFAATPKPTRHIR 207
Query: 181 KQLAQKTGLSKRVLQ 195
+QL+++TGL+ RV+Q
Sbjct: 208 EQLSRETGLNMRVIQ 222
>gi|62859451|ref|NP_001015899.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
gi|89268071|emb|CAJ83129.1| LIM homeobox 7/8 [Xenopus (Silurana) tropicalis]
gi|110645724|gb|AAI18740.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
Length = 374
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 15/193 (7%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ DL +H+ C +C C L + ++D+ IYC+ Y R Y G+
Sbjct: 105 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIYCKLDY----FRRY-GTRCSRCGR 159
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSG----DL 122
W V++ + L+ + ++ + L +H +L
Sbjct: 160 HIHATDW----VRRAKGNVYHLACFACYSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL 215
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
++E+ + S G ++ + KR RTSF QL+ M++ F + NPDA+ L++
Sbjct: 216 KRAVENGNRVSVEGALLTEQDINQPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQK 275
Query: 183 LAQKTGLSKRVLQ 195
L+++TGLS+RV+Q
Sbjct: 276 LSERTGLSRRVIQ 288
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 161 IHATDWVRRAKGNVYHLACFACYSCKRQLSTGEEFALVEEKVLCRVHYDCM 211
>gi|410924249|ref|XP_003975594.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
Length = 338
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I+SS+ V R R FHL CF+C SC L+ G+ G+ + ++CRPHYE++
Sbjct: 126 INSSDWVRRVRGSTFHLACFSCSSCKRQLSTGEECGLLENRVFCRPHYEMV 176
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++L+ +TGLS+RV+Q
Sbjct: 211 KRARTSFTVDQLQVMQTQFAKDSNPDAQTLQRLSDRTGLSRRVIQ 255
>gi|444724034|gb|ELW64656.1| LIM/homeobox protein Lhx6 [Tupaia chinensis]
Length = 336
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 60 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 118
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 119 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 170
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 171 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 228
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 229 KLADMTGLSRRVIQ 242
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 116 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 166
>gi|301623765|ref|XP_002941184.1| PREDICTED: LIM/homeobox protein Lhx6-like [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 108 LLKVNNLIWHVRCLECSVCRTSLRQHNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 166
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 167 SD----W----VRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 218
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 219 KRAA-ENGNGITLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 276
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 277 KLADMTGLSRRVIQ 290
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 164 IYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTM 214
>gi|117645548|emb|CAL38240.1| hypothetical protein [synthetic construct]
Length = 363
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CFTC SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFTCFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFTCFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
>gi|395505631|ref|XP_003757143.1| PREDICTED: LIM/homeobox protein Lhx6 [Sarcophilus harrisii]
Length = 363
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIFA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGITLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IFASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|5738956|dbj|BAA83421.1| LIM-homeodomain (LHX) protein 6.1a [Mus musculus]
Length = 363
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KKAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TG S+RV+Q
Sbjct: 251 KLADMTGFSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|5738954|dbj|BAA83420.1| LIM-homeodomain (LHX) protein 6.1b [Mus musculus]
Length = 348
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KKAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TG S+RV+Q
Sbjct: 251 KLADMTGFSRRVIQ 264
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|47221465|emb|CAG08127.1| unnamed protein product [Tetraodon nigroviridis]
Length = 535
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ +S+ V RAR V+HL CF C SC L+ G+ FG+ + + CR HY+I+
Sbjct: 87 VYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGRVLCRSHYDIM 137
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M+S F + NPDA+ L++LA+ TGLS+RV+Q
Sbjct: 168 AKRARTSFTAEQLQVMQSQFAQDNNPDAQTLQKLAEMTGLSRRVIQ 213
>gi|307174398|gb|EFN64917.1| LIM/homeobox protein Lhx3 [Camponotus floridanus]
Length = 467
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 26/182 (14%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC- 59
G++ S++V RA++LV+HL CF+C C L GD F M D + C+P YE + ++
Sbjct: 152 GLAPSQVVRRAQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELAD 211
Query: 60 -GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANV-------MRIPS 111
GS + +QP + RP TT+ + KL+ ++ P+ + + MR+
Sbjct: 212 GGSIDGDQP-NKRPR----TTITAKQLETLKLAYNTSPKPARHVREQLSQDTGLDMRVVQ 266
Query: 112 TTLE---------MLHSGDLSSSMESLSYESGAGNSSP--GSGVHSHQRTKRMRTSFKHH 160
+ +G S S +SGAG SP + + + ++F HH
Sbjct: 267 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMKSGAGGHSPRHDKLLDKDELKVDLDSTFGHH 326
Query: 161 QL 162
L
Sbjct: 327 DL 328
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ V+R + +H C TC CG LT D R+ ++C+ + R C A Q
Sbjct: 97 KYVLRVLERCWHARCLTCRDCGARLT--DKCFARNGHVFCKDDF-FKRFGTKC--AGCGQ 151
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
++P V++ + L+ S S ++ T E D
Sbjct: 152 GLAPS------QVVRRAQELVYHLTCFSCALCSRQLD--------TGDEFYLMEDRKLVC 197
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ ++ A + G + Q KR RT+ QL T+K +N + P +QL+Q
Sbjct: 198 KPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQD 257
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 258 TGLDMRVVQ 266
>gi|242003798|ref|XP_002422864.1| LIM/homeobox protein Awh, putative [Pediculus humanus corporis]
gi|212505746|gb|EEB10126.1| LIM/homeobox protein Awh, putative [Pediculus humanus corporis]
Length = 227
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 143 GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G H + + KR+RT+F QL+ +++ F ++ NPD +DL+++AQ TGLSKRV Q
Sbjct: 95 GYHKN-KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQ 146
>gi|334311482|ref|XP_001364897.2| PREDICTED: LIM/homeobox protein Lhx6 [Monodelphis domestica]
Length = 391
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 110 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIFA 168
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 169 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 220
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 221 KRAA-ENGNGITLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 278
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 279 KLADMTGLSRRVIQ 292
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 166 IFASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 216
>gi|449472133|ref|XP_002192003.2| PREDICTED: insulin gene enhancer protein ISL-2 [Taeniopygia
guttata]
Length = 271
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCR 47
SSS+LVMRARD V+HL CF C +CG L GD F +R+ + CR
Sbjct: 142 FSSSDLVMRARDHVYHLECFRCAACGRQLLPGDQFCLRERDLLCR 186
>gi|351696280|gb|EHA99198.1| LIM/homeobox protein Lhx8 [Heterocephalus glaber]
Length = 348
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 132 ESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L++LA++
Sbjct: 194 ENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAER 253
Query: 187 TGLSKRVLQ 195
TGLS+RV+Q
Sbjct: 254 TGLSRRVIQ 262
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 135 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDFM 185
>gi|395536948|ref|XP_003770470.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
Length = 362
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 132 ESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L++LA++
Sbjct: 208 ENGNGISVEGALLSEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAER 267
Query: 187 TGLSKRVLQ 195
TGLS+RV+Q
Sbjct: 268 TGLSRRVIQ 276
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 149 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 199
>gi|380806555|gb|AFE75153.1| LIM/homeobox protein Lhx6 isoform 4, partial [Macaca mulatta]
Length = 188
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 3 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 53
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 84 AKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 129
>gi|410978995|ref|XP_003995872.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Felis catus]
Length = 363
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|345329744|ref|XP_001512364.2| PREDICTED: LIM/homeobox protein Lhx6 [Ornithorhynchus anatinus]
Length = 364
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + ++++ I+C+ Y R C +
Sbjct: 83 LLKVNNLIWHVRCLECSVCRTSLRQQSSCYIKNKEIFCKVDY-FSRFGTKCARCGRQIYA 141
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 142 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 193
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 194 KRAA-ENGNGITLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 251
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 252 KLADMTGLSRRVIQ 265
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 139 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 189
>gi|390458311|ref|XP_003732089.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Callithrix jacchus]
Length = 381
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|431915961|gb|ELK16215.1| LIM/homeobox protein Lhx4 [Pteropus alecto]
Length = 329
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 34 GIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQND 90
>gi|148707455|gb|EDL39402.1| LIM homeobox protein 4, isoform CRA_a [Mus musculus]
Length = 329
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 34 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 90
>gi|350579610|ref|XP_003480648.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like [Sus
scrofa]
Length = 332
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQVNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RVLQ
Sbjct: 280 KLADMTGLSRRVLQ 293
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|339261154|ref|XP_003368046.1| LIM homeobox transcription factor 1 alpha [Trichinella spiralis]
gi|316964817|gb|EFV49755.1| LIM homeobox transcription factor 1 alpha [Trichinella spiralis]
Length = 260
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
++ S+ V R++D +FH++CF C CG LL GD + ++E I CR +E L H Y
Sbjct: 19 LNPSDFVQRSQDRIFHMNCFGCSICGKLLQPGDEYVRQNEQILCRGDFESLVHNPY 74
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 147 HQRT-KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
H++T KR RT HQ +T K+ F ++ P K + LA++TGLS RV+Q
Sbjct: 88 HKKTLKRPRTILTSHQRKTFKASFEVSAKPCRKVREALAKETGLSVRVVQ 137
>gi|307200797|gb|EFN80850.1| LIM/homeobox protein Lhx3 [Harpegnathos saltator]
Length = 421
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC- 59
G+S S++V RA++LV+HL CF+C C L GD F M D + C+P YE + ++
Sbjct: 153 GLSPSQVVRRAQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELAD 212
Query: 60 -GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM 116
GS + +QP + RP TT+ + KL+ ++ P+ + + + T L+M
Sbjct: 213 GGSIDGDQP-NKRPR----TTITAKQLETLKLAYNTSPKPARHVREQLSQ--DTGLDM 263
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ V+R + +H C TC CG LT D R+ ++CR + R C A Q
Sbjct: 98 KYVLRVLERCWHARCLTCRDCGARLT--DKCFARNGHVFCREDF-FKRFGTKC--AGCSQ 152
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
+SP V++ + L+ S S ++ T E D
Sbjct: 153 GLSPS------QVVRRAQELVYHLTCFSCALCSRQLD--------TGDEFYLMEDRKLVC 198
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ ++ A + G + Q KR RT+ QL T+K +N + P +QL+Q
Sbjct: 199 KPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQD 258
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 259 TGLDMRVVQ 267
>gi|403266043|ref|XP_003925207.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 381
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|157820803|ref|NP_001101818.1| LIM/homeobox protein Lhx4 [Rattus norvegicus]
gi|149058350|gb|EDM09507.1| LIM homeobox protein 4 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 329
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 34 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 90
>gi|334191691|ref|NP_001229263.1| LIM/homeobox protein Lhx6 isoform 4 [Homo sapiens]
gi|90185239|sp|Q9UPM6.2|LHX6_HUMAN RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|7018428|emb|CAB66505.1| hypothetical protein [Homo sapiens]
gi|74353529|gb|AAI03938.1| LIM homeobox 6 [Homo sapiens]
gi|117646920|emb|CAL37575.1| hypothetical protein [synthetic construct]
gi|119607922|gb|EAW87516.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|119607923|gb|EAW87517.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|158260677|dbj|BAF82516.1| unnamed protein product [Homo sapiens]
gi|189054037|dbj|BAG36544.1| unnamed protein product [Homo sapiens]
Length = 363
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|5738958|dbj|BAA83422.1| LIM-homeodomain (LHX) protein 6.1a [Homo sapiens]
Length = 363
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|348570158|ref|XP_003470864.1| PREDICTED: LIM/homeobox protein Lhx6-like [Cavia porcellus]
Length = 363
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|344271981|ref|XP_003407815.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Loxodonta africana]
Length = 392
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|300797193|ref|NP_001179777.1| LIM/homeobox protein Lhx6 [Bos taurus]
gi|296482368|tpg|DAA24483.1| TPA: LIM homeobox 6 isoform 1 [Bos taurus]
Length = 392
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|74355157|gb|AAI03939.1| LIM homeobox 6 [Homo sapiens]
Length = 362
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSE-DINANVMRIPSTTLEMLHSGDLSSSME 127
S W V++ R L+ + + + L +H + +++
Sbjct: 141 SD----W----VRRARGNAYHLAFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLK 192
Query: 128 SLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L++
Sbjct: 193 RAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQK 250
Query: 183 LAQKTGLSKRVLQ 195
LA TGLS+RV+Q
Sbjct: 251 LADMTGLSRRVIQ 263
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL F C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLA-FACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 187
>gi|390458307|ref|XP_002806566.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Callithrix jacchus]
Length = 363
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|301760410|ref|XP_002916006.1| PREDICTED: LIM/homeobox protein Lhx6-like [Ailuropoda melanoleuca]
Length = 390
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 109 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 167
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 168 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 219
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 220 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 277
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 278 KLADMTGLSRRVIQ 291
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 165 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 215
>gi|348513701|ref|XP_003444380.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 375
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + ++++ I+C+ Y R C +
Sbjct: 109 LLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 167
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 168 SD----W----VRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTMVENL 219
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + ESG G + G+ V + Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 220 KRAA-ESGNGITLEGA-VPTEQDSQPKPAKRARTSFTAEQLQIMQAQFAQDNNPDAQTLQ 277
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 278 KLADMTGLSRRVIQ 291
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 165 IYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTM 215
>gi|167773589|gb|ABZ92229.1| LIM homeobox 6 [synthetic construct]
Length = 363
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|440906624|gb|ELR56864.1| LIM/homeobox protein Lhx6, partial [Bos grunniens mutus]
Length = 360
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 84 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 142
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 143 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 194
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 195 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 252
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 253 KLADMTGLSRRVIQ 266
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 140 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 190
>gi|402896489|ref|XP_003911330.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6 [Papio
anubis]
Length = 390
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|345806127|ref|XP_548475.3| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Canis lupus
familiaris]
Length = 363
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|281337700|gb|EFB13284.1| hypothetical protein PANDA_004030 [Ailuropoda melanoleuca]
Length = 360
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 84 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 142
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 143 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 194
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 195 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 252
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 253 KLADMTGLSRRVIQ 266
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 140 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 190
>gi|148679946|gb|EDL11893.1| LIM homeobox protein 8, isoform CRA_a [Mus musculus]
Length = 291
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 132 ESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E+G G S G+ V+ + KR RTSF QL+ M++ F + NPDA+ L++LA++
Sbjct: 152 ENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAER 211
Query: 187 TGLSKRVLQ 195
TGLS+RV+Q
Sbjct: 212 TGLSRRVIQ 220
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H++ +
Sbjct: 93 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCM 143
>gi|395824115|ref|XP_003785316.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Otolemur garnettii]
Length = 392
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|321477982|gb|EFX88940.1| hypothetical protein DAPPUDRAFT_4176 [Daphnia pulex]
Length = 199
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 24/185 (12%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPW 75
+H C C C L +R IYCR Y R + G+ S A W
Sbjct: 20 TWHSTCLRCSVCRTALDNQPSCFVRAGAIYCRADYT----RTF-GAKCARCSRSISAADW 74
Query: 76 QPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM-LHSGDLSSSMESLSYESG 134
V++ R L+ + R ST E LH G + L
Sbjct: 75 ----VRRAREHVYHLACFACDA--------CRRQLSTGEEFALHEGRVLCKTHYLDGLDA 122
Query: 135 AGNSS----PGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLS 190
SS P G S ++KR+RT+F QL +++ F ++ NPD +DL+++A TGLS
Sbjct: 123 GSTSSDETDPEGGGRS--KSKRVRTTFTEEQLHVLQANFLLDSNPDGQDLERIANLTGLS 180
Query: 191 KRVLQ 195
KRV Q
Sbjct: 181 KRVTQ 185
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
IS+++ V RAR+ V+HL CF C +C L+ G+ F + + + C+ HY
Sbjct: 69 ISAADWVRRAREHVYHLACFACDACRRQLSTGEEFALHEGRVLCKTHY 116
>gi|297270222|ref|XP_001089041.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Macaca mulatta]
Length = 392
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|345325463|ref|XP_003430923.1| PREDICTED: hypothetical protein LOC100085508 [Ornithorhynchus
anatinus]
Length = 884
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 645 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 701
>gi|327270281|ref|XP_003219918.1| PREDICTED: LIM/homeobox protein Lhx4-like [Anolis carolinensis]
Length = 449
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 154 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 210
>gi|241688853|ref|XP_002411721.1| LIM domain containing protein [Ixodes scapularis]
gi|215504541|gb|EEC14035.1| LIM domain containing protein [Ixodes scapularis]
Length = 173
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
G S ++ VMRAR ++HL CF C +C L GD F +RD+ ++CR +++L
Sbjct: 95 GFSRTDFVMRARQHIYHLDCFRCQACARQLIPGDEFALRDDGLFCRADHDVL 146
>gi|332832786|ref|XP_001135172.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pan troglodytes]
Length = 392
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|134284359|ref|NP_055183.2| LIM/homeobox protein Lhx6 isoform 1 [Homo sapiens]
gi|297685270|ref|XP_002820218.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pongo abelii]
gi|221042862|dbj|BAH13108.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|110748616|gb|ABG89861.1| Lhx6, partial [Astyanax mexicanus]
Length = 303
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 18/193 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H C C C L + ++++ I+C+ Y R C +
Sbjct: 122 LLKVNNLIWHXRCLECSVCRTSLRQHSSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 180
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 181 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMVENL 232
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + ESG+G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 233 KRAA-ESGSGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 290
Query: 182 QLAQKTGLSKRVL 194
+LA TGLS+RV+
Sbjct: 291 KLADMTGLSRRVI 303
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 178 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 228
>gi|432872837|ref|XP_004072149.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
Length = 346
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ +S+ V RAR V+HL CF C SC L+ G+ FG+ + + CR HY+I+
Sbjct: 136 VYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGRVLCRSHYDIM 186
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA+ TGLS+RV+Q
Sbjct: 217 AKRARTSFTSEQLQVMQTQFAQDNNPDAQTLQKLAEMTGLSRRVIQ 262
>gi|344271985|ref|XP_003407817.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Loxodonta africana]
Length = 366
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|344271983|ref|XP_003407816.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Loxodonta africana]
Length = 377
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|291397314|ref|XP_002715058.1| PREDICTED: LIM homeobox protein 4 [Oryctolagus cuniculus]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|397526998|ref|XP_003833397.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan paniscus]
Length = 377
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 96 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 154
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 155 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 206
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 207 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 264
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 265 KLADMTGLSRRVIQ 278
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 152 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 202
>gi|296482369|tpg|DAA24484.1| TPA: LIM homeobox 6 isoform 2 [Bos taurus]
Length = 377
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|109019176|ref|XP_001115086.1| PREDICTED: LIM/homeobox protein Lhx4-like isoform 2 [Macaca
mulatta]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|339252326|ref|XP_003371386.1| LIM/homeobox protein Lhx1 [Trichinella spiralis]
gi|316968365|gb|EFV52646.1| LIM/homeobox protein Lhx1 [Trichinella spiralis]
Length = 309
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 24/194 (12%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCGS 61
S +LV AR+ FH+ CF C C L GD L+ + D C+ Y H
Sbjct: 78 FSRGDLVRYARNKAFHIDCFCCTICQKRLNTGDQLYIINDSTFVCKTDYMKTSHAQ---K 134
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
A +E+ PA Q + SP A + + ++ + +G
Sbjct: 135 AILEEQDVLSPADEQ------------HFASSSPDSCCSQEQAKLSK-NDDSINGISNGS 181
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + + + S G SS G+ + + RT+ K QL T+K+ F P +
Sbjct: 182 NGADLAATTGTS-VGTSSNGA------KRRGPRTTIKAKQLETLKAAFAATPKPTRHIRE 234
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 235 QLAQETGLNMRVIQ 248
>gi|345806125|ref|XP_003435390.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Canis lupus
familiaris]
Length = 392
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|397508667|ref|XP_003824769.1| PREDICTED: LIM/homeobox protein Lhx4 [Pan paniscus]
gi|410034179|ref|XP_524984.3| PREDICTED: LIM/homeobox protein Lhx4 [Pan troglodytes]
Length = 466
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 171 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 227
>gi|348504454|ref|XP_003439776.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oreochromis niloticus]
Length = 387
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 96 GIPPTQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCKVDYEAAKQND 152
Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 117 LHSGDLSSSMES------LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
L +GD ME + YE+ N +G TKR RT+ QL T+KS +
Sbjct: 125 LATGDEFYLMEDGRLVCKVDYEAAKQNDDSEAG------TKRPRTTITAKQLETLKSAYK 178
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
+ P +QL+ +TGL RV+Q
Sbjct: 179 NSPKPARHVREQLSSETGLDMRVVQ 203
>gi|390458313|ref|XP_003732090.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 4 [Callithrix jacchus]
Length = 366
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|348578364|ref|XP_003474953.1| PREDICTED: LIM/homeobox protein Lhx4 [Cavia porcellus]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|426239972|ref|XP_004013890.1| PREDICTED: LIM/homeobox protein Lhx4 [Ovis aries]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|432115998|gb|ELK37137.1| LIM/homeobox protein Lhx4 [Myotis davidii]
Length = 389
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 94 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 150
>gi|410986072|ref|XP_003999336.1| PREDICTED: LIM/homeobox protein Lhx4 [Felis catus]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|426332930|ref|XP_004028045.1| PREDICTED: LIM/homeobox protein Lhx4 [Gorilla gorilla gorilla]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|410043123|ref|XP_003312314.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pan troglodytes]
Length = 348
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|348533440|ref|XP_003454213.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 392
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ +S+ V RAR V+HL CF C SC L+ G+ FG+ + + CR HY+I+
Sbjct: 182 VYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGRVLCRSHYDIM 232
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA+ TGLS+RV+Q
Sbjct: 263 AKRARTSFTAEQLQVMQTQFAQDNNPDAQTLQKLAEMTGLSRRVIQ 308
>gi|300795912|ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]
gi|296479119|tpg|DAA21234.1| TPA: LIM homeobox 4 [Bos taurus]
gi|440901216|gb|ELR52198.1| LIM/homeobox protein Lhx4 [Bos grunniens mutus]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|73960401|ref|XP_547420.2| PREDICTED: LIM/homeobox protein Lhx4 isoform 1 [Canis lupus
familiaris]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|410923575|ref|XP_003975257.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 310
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ +S+ V RAR V+HL CF C SC L+ G+ FG+ + + CR HY+I+
Sbjct: 100 VYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGRVLCRSHYDIM 150
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M+S F + NPDA+ L++LA+ TGLS+RV+Q
Sbjct: 181 AKRARTSFTAEQLQVMQSQFAQDNNPDAQTLQKLAEMTGLSRRVIQ 226
>gi|351699208|gb|EHB02127.1| LIM/homeobox protein Lhx4 [Heterocephalus glaber]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|18026224|gb|AAL07260.1| LIM homeodomain protein [Homo sapiens]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|15375314|ref|NP_203129.1| LIM/homeobox protein Lhx4 [Homo sapiens]
gi|209572644|sp|Q969G2.2|LHX4_HUMAN RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|14599448|gb|AAK70923.1|AF179849_1 LIM homeobox protein 4 [Homo sapiens]
gi|22094433|gb|AAM91896.1|AF405430_1 LIM homeobox protein 4 [Homo sapiens]
gi|15079940|gb|AAH11759.1| LIM homeobox 4 [Homo sapiens]
gi|123988108|gb|ABM83830.1| LIM homeobox 4 [synthetic construct]
gi|123999145|gb|ABM87154.1| LIM homeobox 4 [synthetic construct]
gi|261861646|dbj|BAI47345.1| LIM homeobox 4 [synthetic construct]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|395541258|ref|XP_003772563.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
Length = 365
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ SS+ V +AR V+HL CF C SC L+ GD F + +E + CR HY+ L
Sbjct: 153 VCSSDWVQKARGYVYHLACFVCFSCKRQLSTGDEFALVEEKVLCRIHYDGL 203
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ D+ +H+ C C C L K ++D I+C+ Y LR C
Sbjct: 97 LLKVNDMYWHMQCLCCSVCQTSLGKHATCFIKDNTIFCKIDY--LRKFGTCCCGCGRYVC 154
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSM 126
S + W VQK R L+ ++ + L +H L
Sbjct: 155 S---SDW----VQKARGYVYHLACFVCFSCKRQLSTGDEFALVEEKVLCRIHYDGLE--- 204
Query: 127 ESLSYESGAGN------SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
+SL E+ GN + + + KR RT+F QL+ M+ ++ NP+A+ L
Sbjct: 205 DSLKREAENGNRISMEDALLLEDMKDLKPAKRARTNFTVDQLQIMQGHYTQENNPNAQAL 264
Query: 181 KQLAQKTGLSKRVLQ 195
++L+++TGLS++ +Q
Sbjct: 265 QKLSERTGLSRKTVQ 279
>gi|402857943|ref|XP_003893495.1| PREDICTED: LIM/homeobox protein Lhx4 [Papio anubis]
gi|355558975|gb|EHH15755.1| hypothetical protein EGK_01889 [Macaca mulatta]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|344278250|ref|XP_003410909.1| PREDICTED: LIM/homeobox protein Lhx4-like [Loxodonta africana]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|194210370|ref|XP_001914860.1| PREDICTED: LIM/homeobox protein Lhx4-like [Equus caballus]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|74355622|gb|AAI03937.1| LIM homeobox 6 [Homo sapiens]
gi|119607921|gb|EAW87515.1| LIM homeobox 6, isoform CRA_a [Homo sapiens]
Length = 348
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|354475897|ref|XP_003500163.1| PREDICTED: LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|5738960|dbj|BAA83423.1| LIM-homeodomain (LHX) protein 6.1b [Homo sapiens]
Length = 348
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|190684642|ref|NP_034842.2| LIM/homeobox protein Lhx4 [Mus musculus]
gi|209572773|sp|P53776.4|LHX4_MOUSE RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|148707456|gb|EDL39403.1| LIM homeobox protein 4, isoform CRA_b [Mus musculus]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|119611484|gb|EAW91078.1| LIM homeobox 4 [Homo sapiens]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|383858395|ref|XP_003704687.1| PREDICTED: LIM/homeobox protein Lhx3-like [Megachile rotundata]
Length = 463
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC- 59
G++ S++V RA++LV+HL CF+C C L GD F M D + C+P YE + ++
Sbjct: 156 GLAPSQVVRRAQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELAD 215
Query: 60 -GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM 116
GS + +QP + RP TT+ + KL+ ++ P+ + + + T L+M
Sbjct: 216 GGSIDGDQP-NKRPR----TTITAKQLETLKLAYNTSPKPARHVREQLSQ--DTGLDM 266
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ V+R + +H C TC CG LT D R+ ++C+ + R C A Q
Sbjct: 101 KYVLRVLERCWHARCLTCRDCGARLT--DKCFARNGHVFCKDDF-FKRFGTKC--AGCGQ 155
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
++P V++ + L+ S S ++ T E D
Sbjct: 156 GLAPS------QVVRRAQELVYHLTCFSCALCSRQLD--------TGDEFYLMEDRKLVC 201
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ ++ A + G + Q KR RT+ QL T+K +N + P +QL+Q
Sbjct: 202 KPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQD 261
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 262 TGLDMRVVQ 270
>gi|297662584|ref|XP_002809779.1| PREDICTED: LIM/homeobox protein Lhx4 [Pongo abelii]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|29437129|gb|AAH49834.1| Lhx4 protein [Mus musculus]
Length = 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|354468096|ref|XP_003496503.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cricetulus griseus]
Length = 344
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 14 DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPA 73
DL +H+ C +C C L + ++D+ I+C+ Y R+ C
Sbjct: 90 DLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY-FRRYGTRCSRC----GRHIHST 144
Query: 74 PWQPTTVQKGRPRKRKLSVDSPTPPSEDINA--NVMRIPSTTLEMLHSGDLSSSMESLSY 131
W V++ + L+ + ++ + L +H + +++
Sbjct: 145 DW----VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFICMLDNLKR-EV 199
Query: 132 ESGAGNSSPGSGVH----SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E+G G S G+ + SH + KR RTSF QL+ M++ F + NPDA+ L++LA++
Sbjct: 200 ENGNGISVEGALLTEQDVSHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAER 259
Query: 187 TGLSKRVLQ 195
TGLS+RV+Q
Sbjct: 260 TGLSRRVIQ 268
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H+
Sbjct: 141 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHF 188
>gi|432856246|ref|XP_004068425.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oryzias latipes]
Length = 389
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 96 GIPPTQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCKVDYETAKQND 152
Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 117 LHSGDLSSSMES------LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
L +GD ME + YE+ N +G TKR RT+ QL T+KS +
Sbjct: 125 LATGDEFYLMEDGRLVCKVDYETAKQNDDSEAG------TKRPRTTITAKQLETLKSAYK 178
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
+ P +QL+ +TGL RV+Q
Sbjct: 179 NSPKPARHVREQLSSETGLDMRVVQ 203
>gi|402590254|gb|EJW84185.1| LIM/homeobox protein Awh [Wuchereria bancrofti]
Length = 200
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+ KR+RT+F QL ++++F I+ NPD DL+++A TGLSKRV Q
Sbjct: 79 KAKRVRTTFAEEQLAVLQTHFQIDSNPDGADLERIATMTGLSKRVTQ 125
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I +++ V RAR+ V+HL CF C C L+ G+ F ++D + C+ HY
Sbjct: 18 IHATDWVRRARNFVYHLACFACDQCKRQLSTGEEFALQDCRLLCKQHY 65
>gi|270007707|gb|EFA04155.1| hypothetical protein TcasGA2_TC014400 [Tribolium castaneum]
Length = 415
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHR 56
+GI +++V RA+D V+HL CF+C+ C L GD F M D + C+P YE + +
Sbjct: 132 LGIPPTQVVRRAQDNVYHLQCFSCVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKSK 188
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 42/198 (21%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++ D +H C C C I LT D R+ ++C+ + R C ++ P
Sbjct: 79 FILKVADRTWHAKCLQCSDCRIQLT--DKCFARNGQLFCKEDF-FKRFGTKCAGCDLGIP 135
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM----LHSGDLS 123
PT V + NV + + M L++GD
Sbjct: 136 ---------PTQVVRR------------------AQDNVYHLQCFSCVMCARQLNTGDEF 168
Query: 124 SSMESL------SYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
ME YE A S + Q KR RT+ QL T+K+ +N + P
Sbjct: 169 YLMEDRKLVCKPDYE--AAKSKAAECLDGDQPNKRPRTTITAKQLETLKNAYNNSPKPAR 226
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL+Q TGL RV+Q
Sbjct: 227 HVREQLSQDTGLDMRVVQ 244
>gi|258504101|gb|ACV72756.1| LIN-11 [Caenorhabditis remanei]
gi|258504105|gb|ACV72758.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 44/195 (22%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCGS 61
+ +LV RARD VFH+ CF C C LL GD L+ M C+ ++
Sbjct: 129 LEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQ---------- 178
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
T + P S+ P + N+++ D
Sbjct: 179 ----------------TATKTSTP----TSMHRPISNGSECNSDM------------EED 206
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRM-RTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + + + G G+ + S+ +R RT+ K QL T+K+ F P
Sbjct: 207 AVDACDDVGLDDGEGDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIR 266
Query: 181 KQLAQKTGLSKRVLQ 195
+QLA +TGL+ RV+Q
Sbjct: 267 EQLAAETGLNMRVIQ 281
>gi|432882277|ref|XP_004073955.1| PREDICTED: uncharacterized protein LOC101155206 [Oryzias latipes]
Length = 553
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I S LVMR+ DL FH CF+C C + L G+L+ M+ +YC HY+
Sbjct: 111 IPPSALVMRSGDLTFHPQCFSCQECDVKLLPGNLYCMQGANLYCESHYQ 159
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 27/41 (65%)
Query: 155 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
T F+ QLR ++SYF NPD KD LA KTGL KRVLQ
Sbjct: 218 TCFRREQLRALESYFAQKHNPDGKDWTCLAHKTGLPKRVLQ 258
>gi|410978997|ref|XP_003995873.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Felis catus]
Length = 404
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
>gi|363740595|ref|XP_001235421.2| PREDICTED: LIM/homeobox protein Lhx6 [Gallus gallus]
Length = 562
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 337 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 387
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 418 AKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 463
>gi|90193535|gb|ABD92360.1| LIM/homeobox protein 6 [Astyanax mexicanus]
Length = 136
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 132 ESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
ESG+G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L++LA
Sbjct: 60 ESGSGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADM 118
Query: 187 TGLSKRVLQ 195
TGLS+RV+Q
Sbjct: 119 TGLSRRVIQ 127
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+S+ V RAR + L CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 3 ASDWVRRARGNAYRLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 51
>gi|431900754|gb|ELK08195.1| LIM/homeobox protein Lhx6 [Pteropus alecto]
Length = 272
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 30 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 80
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 111 AKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 156
>gi|14579221|gb|AAK69169.1|AF282899_1 LIM homeobox protein [Homo sapiens]
gi|15146348|dbj|BAB62817.1| LIM homeobox 4 [Homo sapiens]
Length = 367
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 72 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 128
>gi|403266045|ref|XP_003925208.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|390458309|ref|XP_003732088.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Callithrix jacchus]
Length = 348
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 140
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 141 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 192
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 193 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 250
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 251 KLADMTGLSRRVIQ 264
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|4809173|gb|AAD30125.1|AF135415_1 LIM-homeobox protein [Mus musculus]
Length = 367
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 72 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 128
>gi|410927794|ref|XP_003977325.1| PREDICTED: LIM/homeobox protein Lhx6-like, partial [Takifugu
rubripes]
Length = 223
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 13 IYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTM 63
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 94 AKRARTSFTAEQLQIMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 139
>gi|149058349|gb|EDM09506.1| LIM homeobox protein 4 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 376
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 81 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 137
>gi|410904301|ref|XP_003965630.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 373
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 163 IYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTM 213
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + ++++ I+C+ Y R C +
Sbjct: 107 LLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 165
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 166 SD----W----VRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTMVENL 217
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + ESG G + G+ V + Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 218 KRAA-ESGNGITLEGA-VPTEQDSQPKPAKRARTSFTAEQLQIMQAQFAQDNNPDAQTLQ 275
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 276 KLADMTGLSRRVIQ 289
>gi|301770851|ref|XP_002920842.1| PREDICTED: LIM/homeobox protein Lhx4-like [Ailuropoda melanoleuca]
Length = 390
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF+C+ C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFSCVICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|395824119|ref|XP_003785318.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Otolemur garnettii]
Length = 366
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|340722532|ref|XP_003399658.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus terrestris]
Length = 486
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC- 59
G++ S++V RA++L++HL CF+C C L GD F M D + C+P YE + ++
Sbjct: 179 GLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELAD 238
Query: 60 -GSAEIEQP 67
GS + +QP
Sbjct: 239 GGSIDGDQP 247
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 16/189 (8%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ V+R + +H C TC CG LT D R+ ++C+ + R A Q
Sbjct: 121 KYVLRVLERCWHARCLTCRDCGARLT--DKCFARNGHVFCKDDFFKYGRRFGTKCAGCGQ 178
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
++P V++ + L+ S A R T E D
Sbjct: 179 GLAPS------QVVRRAQELIYHLTCFS--------CALCSRQLDTGDEFYLMEDRKLVC 224
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ ++ A + G + Q KR RT+ QL T+K +N + P +QL+Q
Sbjct: 225 KPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQD 284
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 285 TGLDMRVVQ 293
>gi|258504089|gb|ACV72750.1| LIN-11 [Caenorhabditis remanei]
gi|258504091|gb|ACV72751.1| LIN-11 [Caenorhabditis remanei]
gi|258504093|gb|ACV72752.1| LIN-11 [Caenorhabditis remanei]
gi|258504099|gb|ACV72755.1| LIN-11 [Caenorhabditis remanei]
gi|258504113|gb|ACV72762.1| LIN-11 [Caenorhabditis remanei]
gi|258504115|gb|ACV72763.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 44/195 (22%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCGS 61
+ +LV RARD VFH+ CF C C LL GD L+ M C+ ++
Sbjct: 129 LEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQ---------- 178
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
T + P S+ P + N+++ D
Sbjct: 179 ----------------TATKTSTP----TSMHRPISNGSECNSDM------------EED 206
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRM-RTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + + + G G+ + S+ +R RT+ K QL T+K+ F P
Sbjct: 207 AVDACDDVGLDDGEGDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIR 266
Query: 181 KQLAQKTGLSKRVLQ 195
+QLA +TGL+ RV+Q
Sbjct: 267 EQLAAETGLNMRVIQ 281
>gi|301615074|ref|XP_002937009.1| PREDICTED: LIM/homeobox protein Lhx4-like [Xenopus (Silurana)
tropicalis]
Length = 385
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF+CI C L GD F M D + C+ YE + D
Sbjct: 104 GIPPTQVVRKAQDFVYHLHCFSCIICSRQLATGDEFYLMEDGRLVCKEDYETAKQND 160
>gi|355746127|gb|EHH50752.1| hypothetical protein EGM_01626, partial [Macaca fascicularis]
Length = 364
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 69 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 125
>gi|410043125|ref|XP_003951564.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan troglodytes]
Length = 366
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|171916111|ref|NP_001116445.1| LIM/homeobox protein Lhx4 [Danio rerio]
Length = 391
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF C+ C L GD F M D + C+ YE + D
Sbjct: 98 GIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCKEDYETAKQND 154
>gi|297270224|ref|XP_001088818.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Macaca mulatta]
Length = 377
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|189237525|ref|XP_973330.2| PREDICTED: similar to lim homeobox protein [Tribolium castaneum]
Length = 448
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHR 56
+GI +++V RA+D V+HL CF+C+ C L GD F M D + C+P YE + +
Sbjct: 165 LGIPPTQVVRRAQDNVYHLQCFSCVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKSK 221
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 42/198 (21%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++ D +H C C C I LT D R+ ++C+ + R C ++ P
Sbjct: 112 FILKVADRTWHAKCLQCSDCRIQLT--DKCFARNGQLFCKEDF-FKRFGTKCAGCDLGIP 168
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM----LHSGDLS 123
PT V + NV + + M L++GD
Sbjct: 169 ---------PTQVVR------------------RAQDNVYHLQCFSCVMCARQLNTGDEF 201
Query: 124 SSMESL------SYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
ME YE A S + Q KR RT+ QL T+K+ +N + P
Sbjct: 202 YLMEDRKLVCKPDYE--AAKSKAAECLDGDQPNKRPRTTITAKQLETLKNAYNNSPKPAR 259
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL+Q TGL RV+Q
Sbjct: 260 HVREQLSQDTGLDMRVVQ 277
>gi|268565351|ref|XP_002639418.1| C. briggsae CBR-LIM-7 protein [Caenorhabditis briggsae]
Length = 458
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 6 SELVMRARDL-VFHLHCFTCISCGILLTKGDLFGMRDEMIYCR 47
S+LVMRA DL VFHLHCF+C++C L G+ F +++ +YCR
Sbjct: 131 SDLVMRAGDLNVFHLHCFSCVACEKRLQTGEEFQIKNNNVYCR 173
>gi|297685274|ref|XP_002820220.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Pongo abelii]
Length = 366
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|297270226|ref|XP_002800034.1| PREDICTED: LIM/homeobox protein Lhx6 [Macaca mulatta]
Length = 366
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|258504095|gb|ACV72753.1| LIN-11 [Caenorhabditis remanei]
gi|258504097|gb|ACV72754.1| LIN-11 [Caenorhabditis remanei]
gi|258504103|gb|ACV72757.1| LIN-11 [Caenorhabditis remanei]
gi|258504107|gb|ACV72759.1| LIN-11 [Caenorhabditis remanei]
gi|258504109|gb|ACV72760.1| LIN-11 [Caenorhabditis remanei]
gi|258504111|gb|ACV72761.1| LIN-11 [Caenorhabditis remanei]
gi|258504117|gb|ACV72764.1| LIN-11 [Caenorhabditis remanei]
gi|258504119|gb|ACV72765.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 44/195 (22%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCGS 61
+ +LV RARD VFH+ CF C C LL GD L+ M C+ ++
Sbjct: 129 LEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQ---------- 178
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
T + P S+ P + N+++ D
Sbjct: 179 ----------------TATKTSTP----TSMHRPISNGSECNSDM------------EED 206
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRM-RTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + + + G G+ + S+ +R RT+ K QL T+K+ F P
Sbjct: 207 AVDACDDVGLDDGEGDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIR 266
Query: 181 KQLAQKTGLSKRVLQ 195
+QLA +TGL+ RV+Q
Sbjct: 267 EQLAAETGLNMRVIQ 281
>gi|449478466|ref|XP_002188127.2| PREDICTED: LIM/homeobox protein Lhx6 [Taeniopygia guttata]
Length = 421
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 196 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 246
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + ++++ I+C+ Y R C +
Sbjct: 140 LLKVNNLIWHVRCLECSVCRTSLRQQHSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 198
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 199 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 250
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 251 KRAA-ENGNGITLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 308
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 309 KLADMTGLSRRVIQ 322
>gi|334191689|ref|NP_001229262.1| LIM/homeobox protein Lhx6 isoform 3 [Homo sapiens]
gi|221041678|dbj|BAH12516.1| unnamed protein product [Homo sapiens]
Length = 366
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 100 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 210
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 211 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 268
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 269 KLADMTGLSRRVIQ 282
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|403266388|ref|XP_003925368.1| PREDICTED: LIM/homeobox protein Lhx4 [Saimiri boliviensis
boliviensis]
Length = 390
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICTRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|308485364|ref|XP_003104881.1| CRE-LIN-11 protein [Caenorhabditis remanei]
gi|308257579|gb|EFP01532.1| CRE-LIN-11 protein [Caenorhabditis remanei]
Length = 415
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 44/195 (22%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCGS 61
+ +LV RARD VFH+ CF C C LL GD L+ M C+ ++
Sbjct: 144 LEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQ---------- 193
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
T + P S+ P + N+++ D
Sbjct: 194 ----------------TATKTSTP----TSMHRPISNGSECNSDM------------EED 221
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRM-RTSFKHHQLRTMKSYFNINQNPDAKDL 180
+ + + + G G+ + S+ +R RT+ K QL T+K+ F P
Sbjct: 222 AVDACDDVGLDDGEGDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIR 281
Query: 181 KQLAQKTGLSKRVLQ 195
+QLA +TGL+ RV+Q
Sbjct: 282 EQLAAETGLNMRVIQ 296
>gi|134284361|ref|NP_954629.2| LIM/homeobox protein Lhx6 isoform 2 [Homo sapiens]
gi|297685272|ref|XP_002820219.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pongo abelii]
Length = 377
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|432887976|ref|XP_004075005.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
Length = 366
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 237 AKRARTSFTAEQLQIMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 282
>gi|426362929|ref|XP_004048602.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Gorilla gorilla
gorilla]
Length = 369
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 160 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 210
>gi|395824117|ref|XP_003785317.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Otolemur garnettii]
Length = 377
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L++H+ C C C L + + ++++ I+C+ Y R C +
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY-FSRFGTKCARCGRQIYA 169
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + L +H + ++
Sbjct: 170 SD----W----VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENL 221
Query: 127 ESLSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
+ + E+G G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L+
Sbjct: 222 KRAA-ENGNGLTLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQ 279
Query: 182 QLAQKTGLSKRVLQ 195
+LA TGLS+RV+Q
Sbjct: 280 KLADMTGLSRRVIQ 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|426362927|ref|XP_004048601.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Gorilla gorilla
gorilla]
Length = 384
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 160 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 210
>gi|281354363|gb|EFB29947.1| hypothetical protein PANDA_009642 [Ailuropoda melanoleuca]
Length = 365
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF+C+ C L GD F M D + C+ YE + D
Sbjct: 70 GIPPTQVVRKAQDFVYHLHCFSCVICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 126
>gi|296229653|ref|XP_002760359.1| PREDICTED: LIM/homeobox protein Lhx4 [Callithrix jacchus]
Length = 390
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICTRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|395824959|ref|XP_003785717.1| PREDICTED: LIM/homeobox protein Lhx4 [Otolemur garnettii]
Length = 390
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF C+ C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACVICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
>gi|339247641|ref|XP_003375454.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
gi|316971202|gb|EFV55014.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
Length = 305
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
++ S+ V R++D +FH++CF C CG LL GD + ++E I CR +E L H Y
Sbjct: 64 LNPSDFVQRSQDRIFHMNCFGCSICGKLLQPGDEYVRQNEQILCRGDFESLVHNPY 119
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 28/188 (14%)
Query: 16 VFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR-HRDYCGSAEIEQPMSPRPAP 74
+H C C CG+ L+ +RD + CR Y LR + C + P++P
Sbjct: 15 FWHERCLVCSICGLELSLAPSCFLRDGKVLCRGDY--LRIYGSKCAKCAL--PLNP---- 66
Query: 75 WQPTTVQKGRPRKRKLSVDSPT-------PPSEDINANVMRIPSTTLEMLHSGDLSSSME 127
VQ+ + R ++ + P E + N ++L GD S +
Sbjct: 67 --SDFVQRSQDRIFHMNCFGCSICGKLLQPGDEYVRQNE--------QILCRGDFESLVH 116
Query: 128 SLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
+ YE A P H + KR RT HQ +T K+ F ++ P K + LA++T
Sbjct: 117 N-PYED-AFKLGPFRHGHHKKTLKRPRTILTSHQRKTFKASFEVSAKPCRKVREALAKET 174
Query: 188 GLSKRVLQ 195
GLS RV+Q
Sbjct: 175 GLSVRVVQ 182
>gi|326924792|ref|XP_003208609.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4-like
[Meleagris gallopavo]
Length = 384
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 92 GIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQND 148
>gi|363736513|ref|XP_001235592.2| PREDICTED: LIM/homeobox protein Lhx4 [Gallus gallus]
Length = 374
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 81 GIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQND 137
>gi|312086430|ref|XP_003145073.1| homeobox domain-containing protein [Loa loa]
Length = 169
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 78/190 (41%), Gaps = 50/190 (26%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGM--RDEMIYCRPHYEILRHRDYCGSAEIE 65
+VM+ R L +H CF+C +C LT G+ F + R++ I CR C + IE
Sbjct: 1 MVMKIRTLTYHATCFSCSNCDKKLTIGEEFVLREREDDILCRAD---------CDTNNIE 51
Query: 66 QPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSS 125
QP S + + R+ + D T S D N M SS
Sbjct: 52 QPSSIKTDIY---------GREEEDGWDGSTLTSLD---NQM----------------SS 83
Query: 126 MESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQ 185
LS +S + S R+RT QL T+K+ + N PDA + L +
Sbjct: 84 TPPLSLQSPKSDEST-----------RVRTVLNEKQLMTLKACYAANARPDAMMKEHLVE 132
Query: 186 KTGLSKRVLQ 195
TGLS RV++
Sbjct: 133 MTGLSPRVIR 142
>gi|350418514|ref|XP_003491882.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus impatiens]
Length = 463
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC- 59
G++ S++V RA++L++HL CF+C C L GD F M D + C+P YE + ++
Sbjct: 156 GLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELAD 215
Query: 60 -GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM 116
GS + +QP + RP TT+ + KL+ ++ P+ + + + T L+M
Sbjct: 216 GGSIDGDQP-NKRPR----TTITAKQLETLKLAYNTSPKPARHVREQLSQ--DTGLDM 266
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 19/189 (10%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ V+R + +H C TC CG LT D R+ ++C+ + R C A Q
Sbjct: 101 KYVLRVLERCWHARCLTCRDCGARLT--DKCFARNGHVFCKDDF-FKRFGTKC--AGCGQ 155
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
++P V++ + L+ S A R T E D
Sbjct: 156 GLAPS------QVVRRAQELIYHLTCFS--------CALCSRQLDTGDEFYLMEDRKLVC 201
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ ++ A + G + Q KR RT+ QL T+K +N + P +QL+Q
Sbjct: 202 KPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQD 261
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 262 TGLDMRVVQ 270
>gi|334321803|ref|XP_001374523.2| PREDICTED: LIM/homeobox protein Lhx4-like [Monodelphis domestica]
Length = 391
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 96 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 152
>gi|332229917|ref|XP_003264133.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Nomascus
leucogenys]
Length = 376
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|209489466|gb|ACI49225.1| hypothetical protein Csp3_JD05.010 [Caenorhabditis angaria]
Length = 344
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 73/194 (37%), Gaps = 43/194 (22%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCGS 61
+ ELV RARD VFH+ CF C C LL GD L+ + C D+ +
Sbjct: 70 LDKEELVRRARDKVFHIQCFQCSVCQRLLATGDQLYILEGNRFVC--------QTDFQNA 121
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGD 121
+ P S R D + ED + ++ +M+
Sbjct: 122 TKTSTPTSSH--------------RPLSNGSDCASDIEEDTICDEFQVDEIDGDMM---- 163
Query: 122 LSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLK 181
G NS + + + RT+ K QL T+KS F P +
Sbjct: 164 ------------GKDNSDDSNSA----KRRGPRTTIKAKQLETLKSAFAATPKPTRHIRE 207
Query: 182 QLAQKTGLSKRVLQ 195
QLAQ+TGL+ RV+Q
Sbjct: 208 QLAQETGLNMRVIQ 221
>gi|344237493|gb|EGV93596.1| LIM/homeobox protein Lhx8 [Cricetulus griseus]
Length = 230
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 132 ESGAGNSSPGSGVH----SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
E+G G S G+ + SH + KR RTSF QL+ M++ F + NPDA+ L++LA++
Sbjct: 99 ENGNGISVEGALLTEQDVSHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAER 158
Query: 187 TGLSKRVLQ 195
TGLS+RV+Q
Sbjct: 159 TGLSRRVIQ 167
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H+
Sbjct: 40 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHF 87
>gi|332229919|ref|XP_003264134.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Nomascus
leucogenys]
Length = 391
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
>gi|449509307|ref|XP_002191188.2| PREDICTED: LIM/homeobox protein Lhx4-like, partial [Taeniopygia
guttata]
Length = 412
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 112 GIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQND 168
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 291 GIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQND 347
>gi|332229915|ref|XP_003264132.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Nomascus
leucogenys]
Length = 365
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 206
>gi|380012090|ref|XP_003690122.1| PREDICTED: LIM/homeobox protein Lhx3-like [Apis florea]
Length = 465
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC- 59
G++ S++V RA++L++HL CF+C C L GD F M D + C+P YE + ++
Sbjct: 158 GLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELAD 217
Query: 60 -GSAEIEQP 67
GS + +QP
Sbjct: 218 GGSIDGDQP 226
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 19/189 (10%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ V+R + +H C TC CG LT D R+ ++C+ + R C A Q
Sbjct: 103 KYVLRVLERCWHARCLTCRDCGARLT--DKCFARNGHVFCKDDF-FKRFGTKC--AGCGQ 157
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
++P V++ + L+ S A R T E D
Sbjct: 158 GLAPS------QVVRRAQELIYHLTCFS--------CALCSRQLDTGDEFYLMEDRKLVC 203
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ ++ A + G + Q KR RT+ QL T+K +N + P +QL+Q
Sbjct: 204 KPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQD 263
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 264 TGLDMRVVQ 272
>gi|410902629|ref|XP_003964796.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 376
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 77/193 (39%), Gaps = 56/193 (29%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I SEL+MR + V+HL CFTC C L +GD F +++ ++L DY
Sbjct: 98 IGRSELIMRVQGQVYHLGCFTCCECERRLQRGDEFVLKEG--------QLLCRMDY---- 145
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
E E+ M L+ SPTP +E + +
Sbjct: 146 EKEREM---------------------LAAISPTP-TESVKS------------------ 165
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
E G+G H+R+KR RT Q R K+ F ++ P K +
Sbjct: 166 ----EDEDGGVGSGGGKGVDDGKEHKRSKRPRTILTTQQRRAFKASFEVSAKPCRKVRET 221
Query: 183 LAQKTGLSKRVLQ 195
LA +TGL+ RV+Q
Sbjct: 222 LAAETGLTVRVVQ 234
>gi|357617942|gb|EHJ71081.1| insulinprotein enhancer protein isl [Danaus plexippus]
Length = 273
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 39/188 (20%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEILRHRDYCGSAEIEQPM 68
MRA+ ++H+ CF C +C L GD F +R+ +YCR +++L
Sbjct: 1 MRAKTKIYHIDCFRCCACARQLIPGDEFALREGGALYCREDHDVLEK------------- 47
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMES 128
+ T S NA + + H SM
Sbjct: 48 ------------------------SANTSGSSAGNAESNNNTTLSNNNSHHPHELGSMSD 83
Query: 129 LSYESGAGNSSPGSGVHSHQ-RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
ESG+ S + + R+RT QL T+++ + N PDA +QL + T
Sbjct: 84 SGSESGSHKSGRARAGAAADGKPTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT 143
Query: 188 GLSKRVLQ 195
GLS RV++
Sbjct: 144 GLSPRVIR 151
>gi|328782955|ref|XP_394135.3| PREDICTED: LIM/homeobox protein Lhx3 [Apis mellifera]
Length = 442
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC- 59
G++ S++V RA++L++HL CF+C C L GD F M D + C+P YE + ++
Sbjct: 156 GLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELAD 215
Query: 60 -GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM 116
GS + +QP + RP TT+ + KL+ ++ P+ + + + T L+M
Sbjct: 216 GGSIDGDQP-NKRPR----TTITAKQLETLKLAYNTSPKPARHVREQLSQ--DTGLDM 266
Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ V+R + +H C TC CG LT D R+ ++C+ + R C A Q
Sbjct: 101 KYVLRVLERCWHARCLTCRDCGARLT--DKCFARNGHVFCKDDF-FKRFGTKC--AGCGQ 155
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
++P V++ + L+ S S ++ T E D
Sbjct: 156 GLAPS------QVVRRAQELIYHLTCFSCALCSRQLD--------TGDEFYLMEDRKLVC 201
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ ++ A + G + Q KR RT+ QL T+K +N + P +QL+Q
Sbjct: 202 KPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQD 261
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 262 TGLDMRVVQ 270
>gi|70570100|dbj|BAE06536.1| transcription factor protein [Ciona intestinalis]
Length = 170
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 28/30 (93%)
Query: 166 KSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
K+YF+ N NPDAKDLKQLAQ+TGL+KRVLQ
Sbjct: 1 KAYFHQNHNPDAKDLKQLAQETGLTKRVLQ 30
>gi|426223096|ref|XP_004023228.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like
[Ovis aries]
Length = 370
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 160 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 210
>gi|357612982|gb|EHJ68260.1| hypothetical protein KGM_10626 [Danaus plexippus]
Length = 327
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE----ILRH-RDYCGS 61
E+VMRA+ VFH+ CF C+ C L KG+ + +R I+CR +E +++H D
Sbjct: 58 EMVMRAQQYVFHIQCFVCVMCCQPLQKGEQYVIRAGQIFCRQDFEKEMYLMQHAEDDMII 117
Query: 62 AEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+ E+P R P +P T+ R++ K S + SP P
Sbjct: 118 DDSERPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKP 155
>gi|355567465|gb|EHH23806.1| hypothetical protein EGK_07356 [Macaca mulatta]
Length = 363
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|47223723|emb|CAF99332.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 114 IYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTM 164
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 162 LRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
++ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 264 MQIMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 297
>gi|3319761|emb|CAA04011.1| Lhx6 protein [Mus musculus]
Length = 361
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
+++ +L+ H+ C C C L + + ++++ IYC+ Y R C +
Sbjct: 100 LLKVNNLICHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY-FSRFGTKCALCGRQIYA 158
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDLSSSM 126
S W V++ R L+ + ++ + + +H + +
Sbjct: 159 SD----W----VRRARGNAYHLACFACFSCKRHVSTGEEFVLVEEKVFCRIHYDTM---I 207
Query: 127 ESLSYESGAGNSSPGSG-VHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDL 180
E+L + GN G V S Q + KR RTSF QL+ M++ F + NPDA+ L
Sbjct: 208 ENLKRAAENGNVLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 267
Query: 181 KQLAQKTGLSKRVLQ 195
++LA TGLS+RV+Q
Sbjct: 268 QKLADMTGLSRRVIQ 282
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC ++ G+ F + +E ++CR HY+ +
Sbjct: 156 IYASDWVRRARGNAYHLACFACFSCKRHVSTGEEFVLVEEKVFCRIHYDTM 206
>gi|120537751|gb|AAI29375.1| Lhx4 protein [Danio rerio]
Length = 244
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF C+ C L GD F M D + C+ YE + D
Sbjct: 96 GIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCKEDYETAKQND 152
>gi|449266486|gb|EMC77539.1| LIM/homeobox protein Lhx4, partial [Columba livia]
Length = 236
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 70 GIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQND 126
>gi|122934990|gb|ABM68252.1| LHX3 [Lagothrix lagotricha]
gi|124013648|gb|ABM88086.1| LHX3 [Macaca nemestrina]
Length = 67
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHR 56
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R
Sbjct: 11 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQR 67
>gi|47207847|emb|CAF94375.1| unnamed protein product [Tetraodon nigroviridis]
Length = 188
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I SS+ V R R FHL CF+C SC L+ G+ G+ + ++CRPHYE++
Sbjct: 127 IGSSDWVRRVRGSTFHLACFSCSSCKRQLSTGEECGLLENRVFCRPHYEMM 177
>gi|410921498|ref|XP_003974220.1| PREDICTED: LIM/homeobox protein Lhx4-like [Takifugu rubripes]
Length = 389
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI ++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 96 GIPPMQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCKVDYEAAKQND 152
Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 117 LHSGDLSSSMES------LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN 170
L +GD ME + YE+ N +G TKR RT+ QL T+KS +
Sbjct: 125 LATGDEFYLMEDGRLVCKVDYEAAKQNDDSEAG------TKRPRTTITAKQLETLKSAYK 178
Query: 171 INQNPDAKDLKQLAQKTGLSKRVLQ 195
+ P +QL+ +TGL RV+Q
Sbjct: 179 NSPKPARHVREQLSSETGLDMRVVQ 203
>gi|332018435|gb|EGI59029.1| LIM/homeobox protein Lhx3 [Acromyrmex echinatior]
Length = 467
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC- 59
G++ S++V RA++ V+HL CF+C C L GD F M D + C+P YE + ++
Sbjct: 152 GLAPSQVVRRAQEFVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELAD 211
Query: 60 -GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM 116
GS + +QP + RP TT+ + KL+ ++ P+ + + + T L+M
Sbjct: 212 GGSIDGDQP-NKRPR----TTITAKQLETLKLAYNTSPKPARHVREQLSQ--DTGLDM 262
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 19/189 (10%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ V+R + +H C TC CG LT D R+ ++C+ + R C A Q
Sbjct: 97 KYVLRVLERCWHARCLTCRDCGARLT--DKCFARNGHVFCKDDF-FKRFGTKC--AGCGQ 151
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
++P V++ + L+ S A R T E D
Sbjct: 152 GLAPS------QVVRRAQEFVYHLTCFS--------CALCSRQLDTGDEFYLMEDRKLVC 197
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ ++ A + G + Q KR RT+ QL T+K +N + P +QL+Q
Sbjct: 198 KPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQD 257
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 258 TGLDMRVVQ 266
>gi|2641222|gb|AAB86860.1| homeobox protein LIM-3 [Danio rerio]
Length = 374
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHC CI C L GD + M D + C+ YE + R+
Sbjct: 69 GIPPTQVVRRAQDFVYHLHCNACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQRE 125
>gi|307182931|gb|EFN69941.1| LIM/homeobox protein Awh [Camponotus floridanus]
Length = 258
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 142 SGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SG + KR+RT+F QL +++ F ++ NPD +DL+++A TGLSKRV Q
Sbjct: 103 SGHKGGNKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQ 156
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ + + V RAR+ V+HL CF C +C L+ G+ F + D + C+ HY
Sbjct: 37 VGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALVDARLLCKAHY 84
>gi|2149584|gb|AAC53336.1| LIM-homeobox protein [Mus musculus]
Length = 190
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 66 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 122
>gi|443701941|gb|ELU00131.1| hypothetical protein CAPTEDRAFT_168913 [Capitella teleta]
Length = 481
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 97/242 (40%), Gaps = 51/242 (21%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKG-DLFGMRDEMIYCRPHYEILRHRDYCG 60
GIS ++LV RAR+ VFHL CFTC+ C L+ G +L+ + + C+ Y H + G
Sbjct: 71 GISPNDLVRRARNKVFHLKCFTCMVCRKQLSTGEELYVLDENKFICKSDY---LHTKFQG 127
Query: 61 SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVD-----SPT---PPSEDINANVMR---- 108
S + + M + + + + + PT PP ++ + +
Sbjct: 128 SDDEDNDMELTTSDRCEDSASEKEASMNSIHANPGVLLDPTASLPPKNCLSPGIAQHGAH 187
Query: 109 IPSTTLEMLHSGD-LSSSMESLSYESGA--------------------GNSSPGSG-VHS 146
IP T L G LS + +SGA GN S G G V+
Sbjct: 188 IPLETPASLTLGSTLSGNGIKEEVDSGAESDADLENADACSTHTNDSKGNQSKGPGDVNK 247
Query: 147 HQRTKRM-------------RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
T+ RT+ K QL +KS F P +QLA++TGL RV
Sbjct: 248 ENATEDGEATGGKGSKKRGPRTTIKAKQLEVLKSAFAATPKPTRHIREQLAKETGLPMRV 307
Query: 194 LQ 195
+Q
Sbjct: 308 IQ 309
>gi|440808056|gb|AGC24171.1| Lhx3/4, partial [Lymnaea stagnalis]
Length = 127
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDY 58
GI +E+V RA++ V+HL CF C+ C L GD F M D + C+ YE + R+Y
Sbjct: 12 GIPPTEVVRRAQENVYHLDCFACLMCARQLNTGDEFYLMEDRKLVCKTDYEAAKAREY 69
>gi|47220025|emb|CAG12173.1| unnamed protein product [Tetraodon nigroviridis]
Length = 318
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 77/193 (39%), Gaps = 56/193 (29%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I SEL+MR + V+HL CFTC C L +GD F +++ ++L DY
Sbjct: 25 IGRSELIMRVQGQVYHLGCFTCCECERRLQRGDEFVLKEG--------QLLCRMDY---- 72
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDL 122
E E+ M L+ SPTP +E + +
Sbjct: 73 EKEREM---------------------LAAISPTP-TESVKS------------------ 92
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
E G+G H+R+KR RT Q R K+ F ++ P K +
Sbjct: 93 ----EDEDGGVGSGGGKGVDDGKEHKRSKRPRTILTTQQRRAFKASFEVSAKPCRKVRET 148
Query: 183 LAQKTGLSKRVLQ 195
LA +TGL+ RV+Q
Sbjct: 149 LAAETGLTVRVVQ 161
>gi|322793254|gb|EFZ16911.1| hypothetical protein SINV_14186 [Solenopsis invicta]
Length = 392
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRDYC- 59
G++ S++V RA++ V+HL CF+C C L GD F M D + C+P YE + ++
Sbjct: 71 GLAPSQVVRRAQEFVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELAD 130
Query: 60 -GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM 116
GS + +QP + RP TT+ + KL+ ++ P+ + + + T L+M
Sbjct: 131 GGSIDGDQP-NKRPR----TTITAKQLETLKLAYNTSPKPARHVREQLSQ--DTGLDM 181
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQ 66
+ V+R + +H C TC CG LT D R+ ++C+ + R C A Q
Sbjct: 16 KYVLRVLERCWHARCLTCRDCGARLT--DKCFARNGHVFCKDDF-FKRFGTKC--AGCGQ 70
Query: 67 PMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSM 126
++P V++ + L+ S S ++ T E D
Sbjct: 71 GLAPS------QVVRRAQEFVYHLTCFSCALCSRQLD--------TGDEFYLMEDRKLVC 116
Query: 127 ESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 186
+ ++ A + G + Q KR RT+ QL T+K +N + P +QL+Q
Sbjct: 117 KPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQD 176
Query: 187 TGLSKRVLQ 195
TGL RV+Q
Sbjct: 177 TGLDMRVVQ 185
>gi|358338012|dbj|GAA30958.2| LIM/homeobox protein Awh [Clonorchis sinensis]
Length = 482
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 137 NSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+SS SG H ++KR+RTSF QL +++ F++ NPD ++L+++A L+KRV Q
Sbjct: 171 DSSTSSGCSVHSKSKRIRTSFTPDQLAILQANFDVEANPDGQELERIANVARLNKRVTQ 229
>gi|327291552|ref|XP_003230485.1| PREDICTED: LIM/homeobox protein Lhx6-like [Anolis carolinensis]
Length = 190
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 129 LSYESGAGNSSPGSGVHSHQRT-----KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQL 183
L + SG G + G+ V S Q + KR RTSF QL+ M++ F + NPDA+ L++L
Sbjct: 21 LPFLSGNGITLEGA-VPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKL 79
Query: 184 AQKTGLSKRVLQ 195
A TGLS+RV+Q
Sbjct: 80 ADMTGLSRRVIQ 91
>gi|47225657|emb|CAG08000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI ++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 70 GIPPMQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCKVDYEAAKQND 126
Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 129 LSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 188
+ YE+ N +G TKR RT+ QL T+KS + + P +QL+ +TG
Sbjct: 117 VDYEAAKQNDDSEAG------TKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSETG 170
Query: 189 LSKRVLQ 195
L RV+Q
Sbjct: 171 LDMRVVQ 177
>gi|20502369|dbj|BAB91364.1| LIM homeodomain protein [Branchiostoma belcheri]
Length = 402
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D ++HL CF CI C L GD F M D + C+ YE + R+
Sbjct: 106 GIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDEFYLMEDAKLVCKSDYEAAKQRE 162
>gi|124013499|gb|ABM87992.1| LHX6 [Macaca nemestrina]
Length = 198
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|121483796|gb|ABM54189.1| LHX6 [Pan paniscus]
gi|124054101|gb|ABM89234.1| LHX6 [Pongo pygmaeus]
Length = 198
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|195589796|ref|XP_002084635.1| GD14373 [Drosophila simulans]
gi|194196644|gb|EDX10220.1| GD14373 [Drosophila simulans]
Length = 642
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 342 AILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAA 401
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 402 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 451
>gi|442631924|ref|NP_001261754.1| CG32105, isoform C [Drosophila melanogaster]
gi|440215685|gb|AGB94447.1| CG32105, isoform C [Drosophila melanogaster]
Length = 639
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 339 AILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAA 398
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 399 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 448
>gi|24663250|ref|NP_729801.1| CG32105, isoform B [Drosophila melanogaster]
gi|23093601|gb|AAF49930.2| CG32105, isoform B [Drosophila melanogaster]
gi|28316896|gb|AAO39470.1| RE70810p [Drosophila melanogaster]
Length = 640
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 340 AILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAA 399
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 400 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 449
>gi|242011200|ref|XP_002426343.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
gi|212510420|gb|EEB13605.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
Length = 366
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA++ V+HL CF C C L GD F M D+ + C+P YE + +D
Sbjct: 89 GIPPTQVVRRAQENVYHLQCFACAMCARQLNTGDEFYLMEDKKLVCKPDYEAAKTKD 145
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 73/198 (36%), Gaps = 42/198 (21%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
+++ D +H C C CG LT D R+ +YC+ + R C E
Sbjct: 35 FILKVLDRTWHAKCLNCNDCGGPLT--DKCFARNGQVYCKDDF-FKRFGTKCAGCE---- 87
Query: 68 MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM----LHSGDLS 123
+G P PT NV + M L++GD
Sbjct: 88 --------------QGIP---------PTQVVRRAQENVYHLQCFACAMCARQLNTGDEF 124
Query: 124 SSMESL------SYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDA 177
ME YE A + G + Q KR RT+ QL T+KS +N + P
Sbjct: 125 YLMEDKKLVCKPDYE--AAKTKDGVCLDGDQPNKRPRTTITAKQLETLKSAYNNSPKPAR 182
Query: 178 KDLKQLAQKTGLSKRVLQ 195
+QL+Q TGL RV+Q
Sbjct: 183 HVREQLSQDTGLDMRVVQ 200
>gi|260793678|ref|XP_002591838.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277049|gb|EEN47849.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 402
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D ++HL CF CI C L GD F M D + C+ YE + R+
Sbjct: 106 GIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDEFYLMEDAKLVCKSDYEAAKQRE 162
>gi|124111083|gb|ABM91915.1| LHX6 [Pan troglodytes]
Length = 198
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|13509275|emb|CAC35218.1| Lhx7 protein [Xenopus laevis]
Length = 74
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++L+++TGLS+RV+Q
Sbjct: 29 KRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLSERTGLSRRVIQ 73
>gi|225709660|gb|ACO10676.1| LIM/homeobox protein Awh [Caligus rogercresseyi]
Length = 274
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 13/193 (6%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
+ + +++ +H C C C +L ++D++++C+ Y R + GS
Sbjct: 33 TDQYILQVAGQSWHSSCLRCSVCQEILDSHSSCFIKDDLLFCKLDYA----RAF-GSKCF 87
Query: 65 EQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN--VMRIPSTTLEMLHSGDL 122
+ + P+ W V+K R + L+ S ++ L H +L
Sbjct: 88 KCSRNISPSDW----VRKAREQIYHLACFSCDGCKRQLSTGEEFGIFEDRVLCKCHFLEL 143
Query: 123 SSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
+ LS +G SS G S +++KRMRT+F Q++ +++ F+I+ NPD +DL++
Sbjct: 144 RDGI--LSSSDESGESSETGGGGSKKKSKRMRTTFTEDQIQILQANFHIDSNPDGQDLER 201
Query: 183 LAQKTGLSKRVLQ 195
+A TGLSKRV Q
Sbjct: 202 IAGITGLSKRVTQ 214
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR 54
IS S+ V +AR+ ++HL CF+C C L+ G+ FG+ ++ + C+ H+ LR
Sbjct: 93 ISPSDWVRKAREQIYHLACFSCDGCKRQLSTGEEFGIFEDRVLCKCHFLELR 144
>gi|338720274|ref|XP_001916843.2| PREDICTED: LIM/homeobox protein Lhx6-like [Equus caballus]
Length = 239
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|195327101|ref|XP_002030260.1| GM25340 [Drosophila sechellia]
gi|194119203|gb|EDW41246.1| GM25340 [Drosophila sechellia]
Length = 637
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 339 AILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAA 398
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 399 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 448
>gi|56694840|gb|AAW23082.1| Islet [Oikopleura dioica]
Length = 381
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 35/193 (18%)
Query: 14 DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPA 73
D FH HC C CG M++E+ YC+ YE L + ++C +
Sbjct: 62 DYSFHPHCLKCSECGCYFQDATSCFMKNELAYCKEDYERL-YMEHCAKCD---------H 111
Query: 74 PWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMES----- 128
QPT + + + VD + S+ + +L SGD +E+
Sbjct: 112 ALQPTDLV-HKVKNCTFHVDCFSC-------------SSCVRVLVSGDEFLLIETRLFCR 157
Query: 129 ----LSYESGAGNSSPGSGVHSHQR--TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 182
L E N + + T R+RT QL T+++ + N PDA +Q
Sbjct: 158 PCHELESEQSRQNQFRCREMERRNKPKTTRVRTVLNEKQLHTLRTCYQANPRPDALMKEQ 217
Query: 183 LAQKTGLSKRVLQ 195
L + TGLS RV++
Sbjct: 218 LVEMTGLSPRVIR 230
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI 52
+ ++LV + ++ FH+ CF+C SC +L GD F + + ++CRP +E+
Sbjct: 112 ALQPTDLVHKVKNCTFHVDCFSCSSCVRVLVSGDEFLLIETRLFCRPCHEL 162
>gi|122934839|gb|ABM68157.1| LHX6 [Lagothrix lagotricha]
Length = 198
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
>gi|61287134|dbj|BAD91092.1| transcription factor Lmx1b [Danio rerio]
Length = 119
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL+CF C C KGD F ++D + C+ YE R +D GS
Sbjct: 5 IAPTEFVMRALECVYHLNCFCCCVCDRQQRKGDEFVLKDGQLXCKSDYE--REKDLLGSV 62
>gi|195012851|ref|XP_001983760.1| GH15398 [Drosophila grimshawi]
gi|193897242|gb|EDV96108.1| GH15398 [Drosophila grimshawi]
Length = 618
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 320 AILPQELVMRPISNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAA 379
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 380 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 429
>gi|194869797|ref|XP_001972523.1| GG15572 [Drosophila erecta]
gi|190654306|gb|EDV51549.1| GG15572 [Drosophila erecta]
Length = 652
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 348 AILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAA 407
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 408 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 457
>gi|260793680|ref|XP_002591839.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277050|gb|EEN47850.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 278
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D ++HL CF CI C L GD F M D + C+ YE + R+
Sbjct: 106 GIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDEFYLMEDAKLVCKSDYEAAKQRE 162
>gi|194747127|ref|XP_001956004.1| GF24815 [Drosophila ananassae]
gi|190623286|gb|EDV38810.1| GF24815 [Drosophila ananassae]
Length = 613
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 314 AILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFLLRDGQLFCYRHDLEKEMFLAAA 373
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 374 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 423
>gi|196049633|pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
gi|196049634|pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILR 54
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE +
Sbjct: 73 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127
>gi|334853818|gb|AEH05849.1| Lhx3, partial [Capra hircus]
gi|334853820|gb|AEH05850.1| Lhx3, partial [Capra hircus]
Length = 124
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHR 56
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R
Sbjct: 68 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQR 124
>gi|195160505|ref|XP_002021116.1| GL25169 [Drosophila persimilis]
gi|194118229|gb|EDW40272.1| GL25169 [Drosophila persimilis]
Length = 613
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 315 AILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAA 374
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 375 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 424
>gi|334191693|ref|NP_001229264.1| LIM/homeobox protein Lhx6 isoform 5 [Homo sapiens]
Length = 176
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 32 AKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 77
>gi|195376257|ref|XP_002046913.1| GJ13148 [Drosophila virilis]
gi|194154071|gb|EDW69255.1| GJ13148 [Drosophila virilis]
Length = 588
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 289 AILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAA 348
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 349 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 398
>gi|121503133|gb|ABM55112.1| LHX6 [Macaca mulatta]
Length = 73
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 13 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 63
>gi|345493999|ref|XP_001603795.2| PREDICTED: LIM/homeobox protein Lhx3-like [Nasonia vitripennis]
Length = 450
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGM--RDEMIYCRPHYEILRHRDYC 59
G++ S++V RA+D +HL CF+C C L GD F + D + C+P YE + ++
Sbjct: 121 GLAPSQVVRRAQDFTYHLTCFSCAMCSRQLDTGDEFYLMVEDAKLVCKPDYEQAKAKELA 180
Query: 60 --GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM 116
GS + +QP + RP TT+ + KL+ ++ P+ + + + T L+M
Sbjct: 181 DGGSIDGDQP-NKRPR----TTITAKQLETLKLAYNNSPKPARHVREQLSQ--DTGLDM 232
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 19/188 (10%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
V+R D +H C TC CG+ LT + + ++C+ + R+ C A Q +
Sbjct: 67 VLRVMDRCWHAGCLTCRDCGVRLTD-KCYARNNGHVFCKDDF-FKRYGTKC--AGCGQGL 122
Query: 69 SPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSGDLSSSMES 128
+P V++ + L+ S S ++ M+ L +
Sbjct: 123 APS------QVVRRAQDFTYHLTCFSCAMCSRQLDTG-----DEFYLMVEDAKLVCKPD- 170
Query: 129 LSYESG-AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 187
YE A + G + Q KR RT+ QL T+K +N + P +QL+Q T
Sbjct: 171 --YEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNNSPKPARHVREQLSQDT 228
Query: 188 GLSKRVLQ 195
GL RV+Q
Sbjct: 229 GLDMRVVQ 236
>gi|198464782|ref|XP_001353366.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
gi|198149877|gb|EAL30873.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
Length = 620
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 2 GISSSELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILR 54
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 322 AILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAA 381
Query: 55 HRDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 382 AAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 431
>gi|196013287|ref|XP_002116505.1| hypothetical protein TRIADDRAFT_30944 [Trichoplax adhaerens]
gi|190581096|gb|EDV21175.1| hypothetical protein TRIADDRAFT_30944 [Trichoplax adhaerens]
Length = 265
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 26/212 (12%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ ++ A D+ +H C C SC LL + + +R+ YC+ +++L H
Sbjct: 24 INDRYILQVAPDMQYHAACLKCASCQQLLDEKETCFLRNGKPYCKSDFKMLFHNRCTKCN 83
Query: 63 EIEQP----MSPRPAPWQP------TTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPST 112
I +P M + P+ + ++K P R VD+ ++ N M S
Sbjct: 84 RIFEPSEFIMRAKGNPYHIDCFRCHSCMRKLIPGDR-YGVDTYILYCKEHYLNKMSSSS- 141
Query: 113 TLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRT---------KRMRTSFKHHQLR 163
+ L S+M +++ + H+ + R+RT QL+
Sbjct: 142 -----NHDTLQSTMADSDWQNSDNTDTKSQSTHAKSKQLTSRKGMKGTRIRTVLNEKQLQ 196
Query: 164 TMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
T++SY+ N PD+ ++L + TGL+ RV++
Sbjct: 197 TLRSYYASNPRPDSTVKEKLVELTGLNPRVIR 228
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,056,473,906
Number of Sequences: 23463169
Number of extensions: 128806054
Number of successful extensions: 440686
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1981
Number of HSP's successfully gapped in prelim test: 801
Number of HSP's that attempted gapping in prelim test: 435473
Number of HSP's gapped (non-prelim): 5372
length of query: 196
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 61
effective length of database: 9,191,667,552
effective search space: 560691720672
effective search space used: 560691720672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)