Query psy17504
Match_columns 196
No_of_seqs 322 out of 1722
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:15:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rgt_A Fusion of LIM/homeobox 99.4 6.8E-15 2.3E-19 114.6 -4.2 53 2-54 74-127 (169)
2 1wi3_A DNA-binding protein SAT 99.3 1.2E-12 4.3E-17 86.4 3.5 49 147-195 4-53 (71)
3 2dmt_A Homeobox protein BARH-l 99.3 5.4E-12 1.8E-16 86.7 4.9 50 146-195 13-62 (80)
4 1wh5_A ZF-HD homeobox family p 99.2 5E-12 1.7E-16 87.0 4.7 49 147-195 14-66 (80)
5 1wh7_A ZF-HD homeobox family p 99.2 6.5E-12 2.2E-16 86.4 4.6 49 146-195 13-66 (80)
6 2da3_A Alpha-fetoprotein enhan 99.2 7.5E-12 2.6E-16 85.7 4.9 50 146-195 13-62 (80)
7 2cra_A Homeobox protein HOX-B1 99.2 1.7E-11 5.7E-16 82.1 3.5 49 147-195 4-52 (70)
8 2djn_A Homeobox protein DLX-5; 99.2 2.1E-11 7.1E-16 81.6 3.9 48 148-195 5-52 (70)
9 2kt0_A Nanog, homeobox protein 99.1 3.5E-11 1.2E-15 83.2 5.0 50 146-195 18-67 (84)
10 2da1_A Alpha-fetoprotein enhan 99.1 2.2E-11 7.6E-16 81.3 3.3 49 147-195 4-52 (70)
11 2dmu_A Homeobox protein goosec 99.1 2.5E-11 8.7E-16 81.1 3.5 48 148-195 5-52 (70)
12 2da2_A Alpha-fetoprotein enhan 99.1 2.7E-11 9.3E-16 80.9 3.4 49 147-195 4-52 (70)
13 2dms_A Homeobox protein OTX2; 99.1 4.2E-11 1.4E-15 82.1 3.5 49 147-195 4-52 (80)
14 2cue_A Paired box protein PAX6 99.1 5.9E-11 2E-15 81.4 3.9 48 148-195 5-52 (80)
15 1akh_A Protein (mating-type pr 99.1 4.8E-11 1.6E-15 77.6 3.2 49 148-196 3-51 (61)
16 3f6q_B LIM and senescent cell 99.1 1.4E-12 4.6E-17 87.0 -4.3 52 2-54 20-71 (72)
17 1nk2_P Homeobox protein VND; h 99.1 5.8E-11 2E-15 80.9 3.7 49 147-195 6-54 (77)
18 2dmq_A LIM/homeobox protein LH 99.1 5.9E-11 2E-15 81.3 3.5 48 148-195 5-52 (80)
19 1puf_A HOX-1.7, homeobox prote 99.1 8.2E-11 2.8E-15 80.1 4.2 49 147-195 10-58 (77)
20 2l3k_A Rhombotin-2, linker, LI 99.1 4.1E-12 1.4E-16 94.0 -2.6 55 2-56 17-71 (123)
21 2hdd_A Protein (engrailed home 99.1 6.3E-11 2.2E-15 77.1 3.3 46 150-195 3-48 (61)
22 2vi6_A Homeobox protein nanog; 99.1 7.2E-11 2.5E-15 77.0 3.3 47 149-195 2-48 (62)
23 1bw5_A ISL-1HD, insulin gene e 99.1 7.8E-11 2.7E-15 77.8 3.3 47 149-195 2-48 (66)
24 2e1o_A Homeobox protein PRH; D 99.1 8.5E-11 2.9E-15 78.5 3.5 47 149-195 6-52 (70)
25 2h1k_A IPF-1, pancreatic and d 99.0 9.2E-11 3.1E-15 76.8 3.2 47 149-195 2-48 (63)
26 2da4_A Hypothetical protein DK 99.0 5E-11 1.7E-15 81.8 1.9 49 147-195 5-57 (80)
27 2m0c_A Homeobox protein arista 99.0 1.3E-10 4.6E-15 78.4 3.7 48 148-195 7-54 (75)
28 1x61_A Thyroid receptor intera 99.0 3.9E-12 1.3E-16 85.1 -4.0 53 2-55 14-66 (72)
29 2l7z_A Homeobox protein HOX-A1 99.0 1.3E-10 4.4E-15 78.4 3.4 49 147-195 4-52 (73)
30 1ig7_A Homeotic protein MSX-1; 99.0 1.3E-10 4.4E-15 74.7 3.3 45 151-195 1-45 (58)
31 1g47_A Pinch protein; LIM doma 99.0 4.6E-12 1.6E-16 85.8 -3.8 53 2-55 20-72 (77)
32 1wyh_A SLIM 2, skeletal muscle 99.0 4.7E-12 1.6E-16 84.6 -3.8 53 2-55 14-66 (72)
33 1x4k_A Skeletal muscle LIM-pro 99.0 5.1E-12 1.7E-16 84.5 -3.9 53 2-55 14-66 (72)
34 1zq3_P PRD-4, homeotic bicoid 99.0 2E-10 6.7E-15 76.4 3.7 46 150-195 2-47 (68)
35 1jgg_A Segmentation protein EV 99.0 1.9E-10 6.3E-15 74.6 3.3 45 151-195 2-46 (60)
36 1ahd_P Antennapedia protein mu 99.0 1.9E-10 6.4E-15 76.5 3.2 46 150-195 2-47 (68)
37 2r5y_A Homeotic protein sex co 99.0 2.2E-10 7.5E-15 79.9 3.6 48 148-195 26-73 (88)
38 1fjl_A Paired protein; DNA-bin 99.0 1.9E-10 6.6E-15 79.0 3.3 49 147-195 15-63 (81)
39 3rkq_A Homeobox protein NKX-2. 99.0 2.9E-10 9.9E-15 72.8 3.7 46 150-195 2-47 (58)
40 1b8i_A Ultrabithorax, protein 99.0 2.4E-10 8.1E-15 78.6 3.3 47 149-195 19-65 (81)
41 2ehe_A Four and A half LIM dom 99.0 1.3E-11 4.4E-16 84.7 -3.2 54 2-56 24-77 (82)
42 1yz8_P Pituitary homeobox 2; D 99.0 1.6E-10 5.4E-15 76.8 2.2 47 149-195 2-48 (68)
43 3nar_A ZHX1, zinc fingers and 99.0 2.4E-10 8.3E-15 81.0 3.2 48 148-195 23-70 (96)
44 1x4l_A Skeletal muscle LIM-pro 99.0 7.1E-12 2.4E-16 83.9 -4.8 49 6-55 20-68 (72)
45 1ftt_A TTF-1 HD, thyroid trans 99.0 3.3E-10 1.1E-14 75.3 3.3 46 150-195 2-47 (68)
46 1x63_A Skeletal muscle LIM-pro 99.0 1.1E-11 3.8E-16 84.9 -4.1 54 2-56 24-77 (82)
47 2co8_A NEDD9 interacting prote 99.0 2.2E-11 7.4E-16 83.8 -2.7 52 3-55 25-77 (82)
48 2k40_A Homeobox expressed in E 98.9 4.5E-10 1.5E-14 74.3 3.7 45 151-195 2-46 (67)
49 1nyp_A Pinch protein; LIM doma 98.9 2.3E-11 7.9E-16 80.0 -2.7 46 9-55 19-64 (66)
50 1x68_A FHL5 protein; four-and- 98.9 1.9E-11 6.6E-16 82.7 -3.2 48 7-55 21-68 (76)
51 1x2n_A Homeobox protein pknox1 98.9 4.3E-10 1.5E-14 75.7 3.1 49 148-196 5-56 (73)
52 3a01_A Homeodomain-containing 98.9 4.4E-10 1.5E-14 79.3 3.2 48 148-195 15-62 (93)
53 2dn0_A Zinc fingers and homeob 98.9 5.6E-10 1.9E-14 75.7 3.4 46 150-195 8-53 (76)
54 2ecc_A Homeobox and leucine zi 98.9 5.6E-10 1.9E-14 75.8 3.2 44 153-196 6-49 (76)
55 1wig_A KIAA1808 protein; LIM d 98.9 4.3E-11 1.5E-15 80.5 -2.6 48 8-55 18-65 (73)
56 1x6a_A LIMK-2, LIM domain kina 98.9 4.2E-11 1.4E-15 81.9 -2.7 50 7-56 27-77 (81)
57 1x62_A C-terminal LIM domain p 98.9 2.1E-11 7.2E-16 83.2 -4.4 47 9-56 29-75 (79)
58 1b72_A Protein (homeobox prote 98.9 7.9E-10 2.7E-14 78.5 3.6 47 149-195 33-79 (97)
59 1x64_A Alpha-actinin-2 associa 98.9 4.8E-11 1.6E-15 83.2 -3.0 48 8-56 38-85 (89)
60 2ly9_A Zinc fingers and homeob 98.9 1E-09 3.5E-14 73.9 3.7 47 149-195 5-51 (74)
61 2d8x_A Protein pinch; LIM doma 98.9 6.3E-11 2.2E-15 78.7 -2.4 48 8-56 18-65 (70)
62 2cur_A Skeletal muscle LIM-pro 98.9 9.3E-11 3.2E-15 77.7 -1.8 46 9-55 19-64 (69)
63 2cuf_A FLJ21616 protein; homeo 98.9 8.9E-10 3.1E-14 77.9 3.1 49 147-195 4-67 (95)
64 2xjy_A Rhombotin-2; oncoprotei 98.9 5.1E-11 1.7E-15 88.5 -3.7 53 3-55 76-128 (131)
65 2cu8_A Cysteine-rich protein 2 98.9 6.2E-11 2.1E-15 80.1 -3.3 52 3-56 19-71 (76)
66 3a02_A Homeobox protein arista 98.8 1.4E-09 4.7E-14 70.4 3.3 43 153-195 2-44 (60)
67 2d8z_A Four and A half LIM dom 98.8 8.3E-11 2.8E-15 78.1 -2.7 45 10-55 20-64 (70)
68 2hi3_A Homeodomain-only protei 98.8 1.4E-09 4.9E-14 73.1 3.3 45 151-195 3-48 (73)
69 2egq_A FHL1 protein; LIM domai 98.8 3.9E-11 1.3E-15 81.2 -4.6 46 7-53 32-77 (77)
70 1du6_A PBX1, homeobox protein 98.8 1.5E-09 5.1E-14 71.1 3.2 47 150-196 3-52 (64)
71 2l4z_A DNA endonuclease RBBP8, 98.8 8.5E-11 2.9E-15 87.1 -3.2 46 9-54 76-122 (123)
72 2da6_A Hepatocyte nuclear fact 98.8 1.4E-09 4.9E-14 77.7 3.3 48 148-195 4-72 (102)
73 1lfb_A Liver transcription fac 98.8 1.7E-09 5.7E-14 77.2 3.6 50 146-195 5-75 (99)
74 2dar_A PDZ and LIM domain prot 98.8 9.4E-11 3.2E-15 81.9 -3.1 47 9-56 39-85 (90)
75 2d8y_A Eplin protein; LIM doma 98.8 7.7E-11 2.6E-15 82.5 -3.8 52 3-56 25-76 (91)
76 1a7i_A QCRP2 (LIM1); LIM domai 98.8 8.4E-11 2.9E-15 80.4 -3.6 52 3-56 17-68 (81)
77 2dmn_A Homeobox protein TGIF2L 98.8 2E-09 7E-14 74.3 3.0 48 149-196 6-56 (83)
78 1uhs_A HOP, homeodomain only p 98.8 2.8E-09 9.5E-14 71.5 3.5 44 152-195 3-47 (72)
79 2dj7_A Actin-binding LIM prote 98.8 2.4E-10 8.1E-15 78.3 -1.9 45 10-56 31-75 (80)
80 1puf_B PRE-B-cell leukemia tra 98.8 2.5E-09 8.6E-14 71.8 3.2 46 151-196 2-50 (73)
81 2cuq_A Four and A half LIM dom 98.8 1.7E-10 5.7E-15 78.6 -2.9 46 9-55 29-74 (80)
82 2cor_A Pinch protein; LIM doma 98.8 1.2E-10 4.2E-15 79.5 -3.8 46 8-55 28-73 (79)
83 2da5_A Zinc fingers and homeob 98.8 3.9E-09 1.3E-13 71.4 3.5 43 153-195 10-52 (75)
84 3a03_A T-cell leukemia homeobo 98.8 4E-09 1.4E-13 67.3 3.2 41 155-195 2-42 (56)
85 1iml_A CRIP, cysteine rich int 98.8 3E-10 1E-14 76.7 -2.3 52 3-56 10-62 (76)
86 2iyb_E Testin, TESS, TES; LIM 98.8 1E-10 3.6E-15 76.8 -4.6 50 3-53 12-64 (65)
87 1e3o_C Octamer-binding transcr 98.8 3.6E-09 1.2E-13 81.7 3.3 48 148-195 99-146 (160)
88 1au7_A Protein PIT-1, GHF-1; c 98.8 3.6E-09 1.2E-13 80.6 3.2 49 147-195 84-132 (146)
89 2cup_A Skeletal muscle LIM-pro 98.8 1.1E-10 3.7E-15 82.9 -5.0 52 3-55 15-66 (101)
90 3d1n_I POU domain, class 6, tr 98.7 4.3E-09 1.5E-13 80.4 3.5 48 148-195 91-138 (151)
91 2dlo_A Thyroid receptor-intera 98.7 2.6E-10 8.9E-15 77.9 -3.0 47 8-55 28-75 (81)
92 1b72_B Protein (PBX1); homeodo 98.7 4.5E-09 1.5E-13 72.9 3.2 46 151-196 2-50 (87)
93 1x3h_A Leupaxin; paxillin fami 98.7 2.8E-10 9.4E-15 77.5 -3.0 46 9-55 29-74 (80)
94 1rut_X Flinc4, fusion protein 98.7 2.5E-10 8.5E-15 90.1 -4.0 54 3-56 79-132 (188)
95 1j2o_A FLIN2, fusion of rhombo 98.7 2.9E-10 1E-14 82.8 -3.4 49 9-57 18-67 (114)
96 1mnm_C Protein (MAT alpha-2 tr 98.7 4.9E-09 1.7E-13 72.8 3.0 48 149-196 26-76 (87)
97 2xsd_C POU domain, class 3, tr 98.7 5.1E-09 1.7E-13 81.2 3.2 49 147-195 96-144 (164)
98 1v6g_A Actin binding LIM prote 98.7 5.1E-10 1.8E-14 76.4 -3.3 48 8-55 28-75 (81)
99 2d5v_A Hepatocyte nuclear fact 98.7 8.9E-09 3.1E-13 79.6 3.2 50 147-196 94-143 (164)
100 1k61_A Mating-type protein alp 98.7 1E-08 3.6E-13 66.1 2.8 43 154-196 2-47 (60)
101 1m3v_A FLIN4, fusion of the LI 98.7 6.5E-10 2.2E-14 81.9 -3.4 48 9-56 20-68 (122)
102 3l1p_A POU domain, class 5, tr 98.6 1.6E-08 5.6E-13 77.6 3.7 48 148-195 94-141 (155)
103 2xqn_T Testin, TESS; metal-bin 98.6 8.7E-10 3E-14 81.3 -4.1 52 2-54 72-125 (126)
104 1le8_B Mating-type protein alp 98.6 2.3E-08 7.9E-13 68.8 2.8 45 152-196 4-51 (83)
105 2cqx_A LAG1 longevity assuranc 98.6 2.5E-08 8.4E-13 67.0 2.7 44 152-195 10-54 (72)
106 2xqn_T Testin, TESS; metal-bin 98.6 2.5E-09 8.4E-14 78.9 -2.5 46 9-55 18-63 (126)
107 2ecb_A Zinc fingers and homeob 98.5 3.8E-08 1.3E-12 68.7 3.2 40 156-195 17-56 (89)
108 3nau_A Zinc fingers and homeob 98.5 4E-08 1.4E-12 64.6 3.1 38 158-195 12-49 (66)
109 2dmp_A Zinc fingers and homeob 98.5 6.7E-08 2.3E-12 67.4 4.2 40 156-195 19-58 (89)
110 2xjy_A Rhombotin-2; oncoprotei 98.5 3.4E-09 1.2E-13 78.5 -2.9 48 9-56 17-65 (131)
111 2e19_A Transcription factor 8; 98.5 1.1E-07 3.7E-12 62.4 3.7 40 156-195 9-48 (64)
112 1rut_X Flinc4, fusion protein 98.4 6.1E-09 2.1E-13 82.1 -3.3 48 9-56 20-68 (188)
113 1ic8_A Hepatocyte nuclear fact 98.4 3.2E-08 1.1E-12 78.6 0.9 50 147-196 112-182 (194)
114 2h8r_A Hepatocyte nuclear fact 98.4 5.7E-08 1.9E-12 78.3 2.2 43 146-188 138-180 (221)
115 1b8t_A Protein (CRP1); LIM dom 98.4 5.2E-09 1.8E-13 82.7 -4.0 50 5-56 127-176 (192)
116 2l9r_A Homeobox protein NKX-3. 98.4 1.6E-07 5.5E-12 62.5 3.3 41 155-195 9-49 (69)
117 1b8t_A Protein (CRP1); LIM dom 98.3 6.9E-08 2.4E-12 76.2 -0.7 46 10-56 23-68 (192)
118 1x2m_A LAG1 longevity assuranc 98.3 6.1E-07 2.1E-11 58.7 3.4 37 159-195 9-46 (64)
119 2rgt_A Fusion of LIM/homeobox 98.3 3.8E-08 1.3E-12 76.2 -2.9 46 9-56 21-66 (169)
120 2jtn_A LIM domain-binding prot 98.2 4E-08 1.4E-12 77.0 -3.0 46 9-56 75-120 (182)
121 3k2a_A Homeobox protein MEIS2; 98.2 1E-06 3.5E-11 58.1 2.9 41 156-196 4-47 (67)
122 2da7_A Zinc finger homeobox pr 98.1 1.3E-06 4.5E-11 57.8 3.2 37 159-195 14-50 (71)
123 1mh3_A Maltose binding-A1 home 97.8 7.6E-06 2.6E-10 70.5 3.3 48 149-196 364-411 (421)
124 2lk2_A Homeobox protein TGIF1; 97.5 3.3E-05 1.1E-09 53.6 2.2 41 156-196 11-54 (89)
125 1j2o_A FLIN2, fusion of rhombo 93.1 0.023 7.8E-07 40.5 0.7 41 15-55 62-107 (114)
126 1m3v_A FLIN4, fusion of the LI 92.7 0.024 8.4E-07 40.8 0.4 24 33-56 93-116 (122)
127 1zfo_A LAsp-1; LIM domain, zin 81.4 0.055 1.9E-06 29.6 -3.1 19 3-22 13-31 (31)
128 2das_A Zinc finger MYM-type pr 64.3 2.3 7.8E-05 26.8 1.0 32 23-54 22-55 (62)
129 2ys9_A Homeobox and leucine zi 54.8 8.9 0.00031 24.9 2.6 33 163-195 19-51 (70)
130 1loi_A Cyclic 3',5'-AMP specif 41.6 6.8 0.00023 19.7 0.3 13 22-34 6-18 (26)
131 1jjd_A Metallothionein, SMTA; 30.8 17 0.00057 22.4 1.0 27 23-50 9-36 (55)
132 2elh_A CG11849-PA, LD40883P; s 30.7 23 0.00079 23.1 1.7 40 151-195 17-56 (87)
133 1hlv_A CENP-B, major centromer 24.4 48 0.0016 22.8 2.6 40 153-195 4-43 (131)
134 2eqg_A Tumor necrosis factor, 23.5 13 0.00044 21.8 -0.5 28 23-55 13-40 (49)
135 1iuf_A Centromere ABP1 protein 23.1 55 0.0019 23.4 2.8 41 151-194 6-53 (144)
136 2glo_A Brinker CG9653-PA; prot 21.9 39 0.0013 20.1 1.5 40 155-195 4-43 (59)
137 2kr4_A Ubiquitin conjugation f 21.5 25 0.00086 22.9 0.6 34 20-55 13-46 (85)
138 1wj7_A Hypothetical protein (R 20.3 63 0.0022 22.4 2.4 42 152-194 15-57 (104)
139 2lbz_A Thuricin17, thurincin H 20.0 40 0.0014 17.5 1.0 12 20-31 6-17 (31)
No 1
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.38 E-value=6.8e-15 Score=114.64 Aligned_cols=53 Identities=43% Similarity=0.943 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccc-cccceeeeccchhhhh
Q psy17504 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILR 54 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~-~~~~~~~C~~~y~~~~ 54 (196)
.|.+.++|++|.+..||..||+|..|+++|..|+.|+ +.++++||+.||..++
T Consensus 74 ~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 74 GIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127 (169)
T ss_dssp BCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHH
T ss_pred ccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHh
Confidence 4666677888999999999999999999997788875 4689999999998765
No 2
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=1.2e-12 Score=86.37 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=46.4
Q ss_pred ccccchhhcccchhhHhhhhhhhcc-cCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNI-NQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~-~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+++||.||.|+.+||..|+..|+. ++||+..+|+.||+.|||++++||
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~Iq 53 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3467889999999999999999999 999999999999999999999997
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.4e-12 Score=86.66 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=47.3
Q ss_pred cccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 146 ~~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..++.||.||.||..|+..|+..|..++||+...+++||..++|++.+||
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK 62 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHee
Confidence 45677889999999999999999999999999999999999999999997
No 4
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.25 E-value=5e-12 Score=86.99 Aligned_cols=49 Identities=29% Similarity=0.377 Sum_probs=46.3
Q ss_pred ccccchhhcccchhhHhhhhhhhcc----cCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNI----NQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~----~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.++.||.||.||..|+.+|+..|+. ++||+...|++||..|||++++||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vk 66 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLK 66 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCccccc
Confidence 3567889999999999999999999 999999999999999999999997
No 5
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.23 E-value=6.5e-12 Score=86.40 Aligned_cols=49 Identities=35% Similarity=0.448 Sum_probs=45.5
Q ss_pred cccccchhhcccchhhHhhhhhhhcc-----cCCCChHHHHHHHHHhCcchhhhc
Q psy17504 146 SHQRTKRMRTSFKHHQLRTMKSYFNI-----NQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 146 ~~~k~rR~RT~ft~~Ql~~L~~~F~~-----~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
...+.||.||.||..|+..|+ .|.. ++||+...|++||..|+|++++||
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVk 66 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccc
Confidence 345678899999999999999 8999 999999999999999999999997
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.23 E-value=7.5e-12 Score=85.74 Aligned_cols=50 Identities=38% Similarity=0.599 Sum_probs=47.0
Q ss_pred cccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 146 ~~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..++.||.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~ 62 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhH
Confidence 44577889999999999999999999999999999999999999999997
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.16 E-value=1.7e-11 Score=82.07 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=46.0
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..+.||.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhh
Confidence 3466789999999999999999999999999999999999999999997
No 8
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=2.1e-11 Score=81.57 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=45.7
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+.||.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 466889999999999999999999999999999999999999999997
No 9
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=83.17 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=46.8
Q ss_pred cccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 146 ~~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
...+.||.||.|+..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 67 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK 67 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 34567889999999999999999999999999999999999999999997
No 10
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.13 E-value=2.2e-11 Score=81.35 Aligned_cols=49 Identities=37% Similarity=0.728 Sum_probs=46.2
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..+.||.||.||..|+..|+..|+.++||+...+++||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3467889999999999999999999999999999999999999999997
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.5e-11 Score=81.11 Aligned_cols=48 Identities=29% Similarity=0.462 Sum_probs=45.4
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+.||.||.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHee
Confidence 356788999999999999999999999999999999999999999997
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.12 E-value=2.7e-11 Score=80.92 Aligned_cols=49 Identities=29% Similarity=0.520 Sum_probs=46.0
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..+.||.||.|+..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIV 52 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhH
Confidence 3466789999999999999999999999999999999999999999997
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=4.2e-11 Score=82.11 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=46.2
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.++.||.||.|+..|+..|+..|..++||+...+++||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3467889999999999999999999999999999999999999999997
No 14
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.09 E-value=5.9e-11 Score=81.41 Aligned_cols=48 Identities=29% Similarity=0.427 Sum_probs=45.5
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+.||.||.|+..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 356789999999999999999999999999999999999999999997
No 15
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.09 E-value=4.8e-11 Score=77.56 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=38.8
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
++.+|.||.|+..|+..|+..|..++||+...+++||..+||++.+|++
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~ 51 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRV 51 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 4678899999999999999999999999999999999999999999973
No 16
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.09 E-value=1.4e-12 Score=86.99 Aligned_cols=52 Identities=25% Similarity=0.627 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhh
Q psy17504 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR 54 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~ 54 (196)
.|.+.+.++++.++.||..||+|..|+++|..+ .|...++++||+.||..+|
T Consensus 20 ~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 20 GFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp BCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG-CCEEETTEEECHHHHHHHT
T ss_pred cccCCceEEEeCcCeeCcCCCcccCCCCCCCCC-CeEeECCeEeCHHHHHHhh
Confidence 456667778899999999999999999999665 7778899999999999876
No 17
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.08 E-value=5.8e-11 Score=80.85 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=46.0
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.++.||.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3466788999999999999999999999999999999999999999997
No 18
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.9e-11 Score=81.29 Aligned_cols=48 Identities=88% Similarity=1.186 Sum_probs=45.6
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+.||.||.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhh
Confidence 356789999999999999999999999999999999999999999997
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.08 E-value=8.2e-11 Score=80.10 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=46.2
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.++.+|.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 58 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 3567789999999999999999999999999999999999999999997
No 20
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.07 E-value=4.1e-12 Score=93.97 Aligned_cols=55 Identities=29% Similarity=0.584 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
.|.+.+.+|+|.+++||..||+|..|+++|..|+.|++.++++||..||..++..
T Consensus 17 ~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 17 RIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp CCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred eecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 4666678889999999999999999999998888899999999999999998864
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.07 E-value=6.3e-11 Score=77.05 Aligned_cols=46 Identities=33% Similarity=0.466 Sum_probs=41.4
Q ss_pred cchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 150 ~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.||.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 5789999999999999999999999999999999999999999997
No 22
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.06 E-value=7.2e-11 Score=77.04 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=40.4
Q ss_pred ccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.+|.||.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 46789999999999999999999999999999999999999999997
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.06 E-value=7.8e-11 Score=77.82 Aligned_cols=47 Identities=40% Similarity=0.629 Sum_probs=45.0
Q ss_pred ccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.||.||.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 46789999999999999999999999999999999999999999997
No 24
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.05 E-value=8.5e-11 Score=78.55 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=44.6
Q ss_pred ccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.++.||.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 52 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhh
Confidence 45678999999999999999999999999999999999999999997
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.04 E-value=9.2e-11 Score=76.80 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=43.0
Q ss_pred ccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.||.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 35778999999999999999999999999999999999999999997
No 26
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=5e-11 Score=81.76 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=46.2
Q ss_pred ccccchhhcccchhhHhhhhhhhccc----CCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNIN----QNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~----~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.++.||.||.||..|+..|+..|+.+ +||+...+++||..+||++.+||
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~ 57 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVR 57 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhh
Confidence 34678899999999999999999999 99999999999999999999997
No 27
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=78.41 Aligned_cols=48 Identities=31% Similarity=0.468 Sum_probs=45.5
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+.+|.||.|+..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 54 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 466789999999999999999999999999999999999999999996
No 28
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.03 E-value=3.9e-12 Score=85.13 Aligned_cols=53 Identities=28% Similarity=0.546 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
.|.+.+.++.|.++.||..||+|..|+++| .+..|+..++++||+.||..++.
T Consensus 14 ~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 14 DVVGDGAGVVALDRVFHVGCFVCSTCRAQL-RGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCCSSSCCEECSSSEECTTTCBCSSSCCBC-TTSCEEESSSCEEEHHHHHHHHH
T ss_pred ccCCCceEEEECCCeEcccCCcccccCCcC-CcCcCEeeCCeEECHHHHHHHHc
Confidence 355556678899999999999999999999 67788889999999999998875
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.02 E-value=1.3e-10 Score=78.38 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=46.1
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..+.||.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 52 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHH
Confidence 3466889999999999999999999999999999999999999999997
No 30
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.02 E-value=1.3e-10 Score=74.72 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=43.3
Q ss_pred chhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 151 rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
||.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 568999999999999999999999999999999999999999997
No 31
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=4.6e-12 Score=85.76 Aligned_cols=53 Identities=25% Similarity=0.610 Sum_probs=46.3
Q ss_pred CCChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
.|.+.+.+++|.++.||..||+|..|+++|..+ .|...++++||+.||..++.
T Consensus 20 ~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~~f~ 72 (77)
T 1g47_A 20 GFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLFA 72 (77)
T ss_dssp BCCSTTTCEEETTEEECTTTCCCTTTCCCCGGG-CSEEETTEEECHHHHHHHCC
T ss_pred ccCCCceEEEeCccEeccccCeECCCCCCCCCC-CeEeECCeEeCHHHHHHHhh
Confidence 456677888999999999999999999999655 57788999999999998874
No 32
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=4.7e-12 Score=84.64 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
.|.+.+.+++|.++.||..||+|..|+++|. +..|...++++||+.||..++.
T Consensus 14 ~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1wyh_A 14 TVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG-SRSFVPDKGAHYCVPCYENKFA 66 (72)
T ss_dssp BCCSSSCEECSTTCCEETTTCBCTTTCCBTT-TSCEEEETTEEEEHHHHHHHTS
T ss_pred ccccCccEEEECccccCcccCeECCCCCcCC-CCccCCcCCeEECHHHHHHHcc
Confidence 3555567788999999999999999999994 5578888999999999998875
No 33
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.01 E-value=5.1e-12 Score=84.48 Aligned_cols=53 Identities=25% Similarity=0.456 Sum_probs=45.8
Q ss_pred CCChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
.|.+.+.+++|.++.||..||+|..|+++|. +..|...++++||+.||..++.
T Consensus 14 ~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1x4k_A 14 TIMPGTRKMEYKGSSWHETCFICHRCQQPIG-TKSFIPKDNQNFCVPCYEKQHA 66 (72)
T ss_dssp CCCSSSCEEEETTEEEETTTTCCSSSCCCCC-SSSEEEETTEEEEHHHHHHHTS
T ss_pred cccCCceEEEECcCeecccCCcccccCCccC-CCccCccCCeEECHHHHhHHhC
Confidence 4555567788999999999999999999995 4478889999999999998875
No 34
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.01 E-value=2e-10 Score=76.36 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=44.2
Q ss_pred cchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 150 ~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+||.||.||..|+..|+..|..++||+...++.||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 47 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 4778999999999999999999999999999999999999999997
No 35
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.00 E-value=1.9e-10 Score=74.56 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=42.9
Q ss_pred chhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 151 rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
||.||.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 578999999999999999999999999999999999999999997
No 36
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=98.99 E-value=1.9e-10 Score=76.49 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=44.0
Q ss_pred cchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 150 ~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+||.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhh
Confidence 3678999999999999999999999999999999999999999997
No 37
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=98.99 E-value=2.2e-10 Score=79.91 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=42.3
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+.||.||.||..|+..|+..|..++||+...|++||..+||++.+||
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 73 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 73 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhh
Confidence 356789999999999999999999999999999999999999999997
No 38
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=98.99 E-value=1.9e-10 Score=78.97 Aligned_cols=49 Identities=33% Similarity=0.512 Sum_probs=45.4
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.++.||.||.|+..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 63 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 4567889999999999999999999999999999999999999999997
No 39
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=98.98 E-value=2.9e-10 Score=72.84 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=43.7
Q ss_pred cchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 150 ~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+||.||.|+..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHH
Confidence 3568999999999999999999999999999999999999999997
No 40
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=98.97 E-value=2.4e-10 Score=78.60 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=41.4
Q ss_pred ccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.||.||.||..|+..|+..|..++||+...|++||..+||++.+||
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 65 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 56789999999999999999999999999999999999999999997
No 41
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-11 Score=84.68 Aligned_cols=54 Identities=24% Similarity=0.386 Sum_probs=46.8
Q ss_pred CCChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
.|.+.+.+++|.++.||..||+|..|+++| .+..|...++++||+.||..++..
T Consensus 24 ~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~~C~~c~~~~~~~ 77 (82)
T 2ehe_A 24 LIGHDSRELFYEDRHFHEGCFRCCRCQRSL-ADEPFTCQDSELLCNDCYCSAFSS 77 (82)
T ss_dssp BCCSSCCBCCCSSCCCBTTTSBCTTTCCBC-SSCCEEEETTEEEETTTSSCCGGG
T ss_pred ccccCcEEEEeCCccccccCCeecCCCCcc-CCCccEeeCCEEECHHHHhhhcCC
Confidence 355567788899999999999999999999 477888899999999999888753
No 42
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=98.97 E-value=1.6e-10 Score=76.80 Aligned_cols=47 Identities=28% Similarity=0.461 Sum_probs=44.8
Q ss_pred ccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.||.||.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 48 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 45788999999999999999999999999999999999999999997
No 43
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.97 E-value=2.4e-10 Score=81.03 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=42.9
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
...+|.||.||..|+..|+..|..++||+...+++||..+||++++||
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 70 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHee
Confidence 455678999999999999999999999999999999999999999997
No 44
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.96 E-value=7.1e-12 Score=83.88 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=43.5
Q ss_pred HHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 6 SELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 6 ~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
.+.++.|.++.||..||+|..|+++| .+..|..+++++||+.||..++.
T Consensus 20 ~~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~c~~~~~~ 68 (72)
T 1x4l_A 20 GTKYISFEERQWHNDCFNCKKCSLSL-VGRGFLTERDDILCPDCGKDISG 68 (72)
T ss_dssp SCSCEECSSCEECTTTCBCSSSCCBC-TTSCCEECSSSEECHHHHHTCCC
T ss_pred CcceEEECCcccCcccCEeccCCCcC-CCCccEeECCEEEChhHcCcccC
Confidence 34677889999999999999999999 57788889999999999998774
No 45
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.96 E-value=3.3e-10 Score=75.27 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=44.1
Q ss_pred cchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 150 ~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.||.||.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhH
Confidence 4678999999999999999999999999999999999999999997
No 46
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.95 E-value=1.1e-11 Score=84.90 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=46.3
Q ss_pred CCChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
.|.+.+.+++|.++.||..||+|..|+++|.. ..|...++++||+.||..++..
T Consensus 24 ~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~-~~~~~~~~~~yC~~cy~~~f~~ 77 (82)
T 1x63_A 24 AIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT-GSFFPKGEDFYCVTCHETKFAS 77 (82)
T ss_dssp BCCSSSCEEECSSCEEETTTCCCSSSCCCCTT-SCEEEETTEEEEHHHHHHHTSC
T ss_pred ccccCceEEEECccccccccCchhhCCCccCC-CccEeeCCEEECHHHHHHHhCC
Confidence 35566777889999999999999999999954 4788889999999999998864
No 47
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.95 E-value=2.2e-11 Score=83.83 Aligned_cols=52 Identities=25% Similarity=0.435 Sum_probs=41.9
Q ss_pred CChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccc-cccceeeeccchhhhhh
Q psy17504 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRH 55 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~-~~~~~~~C~~~y~~~~~ 55 (196)
|...++|+ +.+++||..||+|..|+++|..+..+. .+++++||+.||..++.
T Consensus 25 I~~~e~v~-a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 25 LYVLERLC-VNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp CCTTTBCC-BTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred cccceEEE-ECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence 44455554 889999999999999999996555443 47999999999998775
No 48
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.95 E-value=4.5e-10 Score=74.34 Aligned_cols=45 Identities=33% Similarity=0.514 Sum_probs=43.6
Q ss_pred chhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 151 rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
||.||.||..|+..|+..|..++||+...++.||..+||++.+|+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQ 46 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhh
Confidence 678999999999999999999999999999999999999999997
No 49
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.95 E-value=2.3e-11 Score=79.98 Aligned_cols=46 Identities=28% Similarity=0.538 Sum_probs=41.2
Q ss_pred HHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
++.|.++.||..||+|..|+++| .+..|...++.+||+.||..+++
T Consensus 19 ~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f~ 64 (66)
T 1nyp_A 19 VVNAMGKQWHVEHFVCAKCEKPF-LGHRHYERKGLAYCETHYNQLFG 64 (66)
T ss_dssp EECCTTSBEETTTCBCTTTCCBC-SSSCCEEETTEEECHHHHHHHCS
T ss_pred EEEECccccccCcCEECCCCCCC-CCCceEeECCcEECHHHHHHHhC
Confidence 46788999999999999999999 56788889999999999998875
No 50
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.94 E-value=1.9e-11 Score=82.70 Aligned_cols=48 Identities=23% Similarity=0.483 Sum_probs=42.7
Q ss_pred HHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 7 ~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
+.++.|.++.||..||+|..|+++| .+..|+..++++||+.||..++.
T Consensus 21 ~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 21 AKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp CCEEEETTEEEEGGGCBCTTTCCBC-SSSCEEEETTEEEETTTTCCCCC
T ss_pred ceeEEECCcccCcccCChhhCCCcC-CCCceEeECCEEECHHHhhhhhC
Confidence 3567889999999999999999999 47788889999999999988775
No 51
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.93 E-value=4.3e-10 Score=75.66 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=45.2
Q ss_pred cccchhhcccchhhHhhhhhhhcc---cCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~---~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
.+.+|.||.|+..|+..|+..|.. ++||+..++++||..+||++.+|++
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 56 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNN 56 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 456778999999999999999976 9999999999999999999999973
No 52
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.93 E-value=4.4e-10 Score=79.29 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=45.6
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+.||.||.||..|+..|+..|..++||+...|++||..+||++.+||
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVK 62 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 456789999999999999999999999999999999999999999997
No 53
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=5.6e-10 Score=75.74 Aligned_cols=46 Identities=30% Similarity=0.456 Sum_probs=43.3
Q ss_pred cchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 150 ~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.+.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 53 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhh
Confidence 3446899999999999999999999999999999999999999997
No 54
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.91 E-value=5.6e-10 Score=75.79 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=41.0
Q ss_pred hhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 153 MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 153 ~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
.|+.||.+||.+|+..|..++||+..+|++||..|||++.+||.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkv 49 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 49 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 45669999999999999999999999999999999999999973
No 55
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.90 E-value=4.3e-11 Score=80.53 Aligned_cols=48 Identities=21% Similarity=0.505 Sum_probs=43.3
Q ss_pred HHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 8 ~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
.++.|.++.||..||+|..|+++|..|..|++.++++||..||..++.
T Consensus 18 ~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 18 RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 456789999999999999999999668999999999999999988764
No 56
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.90 E-value=4.2e-11 Score=81.89 Aligned_cols=50 Identities=24% Similarity=0.676 Sum_probs=44.1
Q ss_pred HHHHHHHhHHHhhhhhhhhhhcceeccCCcccc-ccceeeeccchhhhhhc
Q psy17504 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGM-RDEMIYCRPHYEILRHR 56 (196)
Q Consensus 7 ~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~-~~~~~~C~~~y~~~~~~ 56 (196)
+.+++|.++.||..||+|..|+++|..|..|.+ .++++||+.||..++..
T Consensus 27 ~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 27 GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 456788999999999999999999977888884 89999999999988853
No 57
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.90 E-value=2.1e-11 Score=83.18 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=42.0
Q ss_pred HHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
+++|.++.||..||+|..|+++| .+..|+..++++||+.||..++.+
T Consensus 29 ~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~~p 75 (79)
T 1x62_A 29 FVKLRDRHRHPECYVCTDCGTNL-KQKGHFFVEDQIYCEKHARERVSG 75 (79)
T ss_dssp CEECSSCEECTTTTSCSSSCCCH-HHHCCEESSSCEECHHHHHHHHSS
T ss_pred EEEECcceeCcCcCeeCCCCCCC-CCCCeEeECCEEECHHHHHHHhCC
Confidence 67889999999999999999999 456788889999999999998864
No 58
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=98.90 E-value=7.9e-10 Score=78.46 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=42.3
Q ss_pred ccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.+|.||.||..|+..|+..|..++||+...|++||..+||++.+||
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 79 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhH
Confidence 56778999999999999999999999999999999999999999997
No 59
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=4.8e-11 Score=83.21 Aligned_cols=48 Identities=27% Similarity=0.545 Sum_probs=41.5
Q ss_pred HHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 8 ~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
.+++|.++.||..||+|..|++.|. +..|+..++++||+.||..++..
T Consensus 38 ~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~~f~p 85 (89)
T 1x64_A 38 AVVKARDKYRHPECFVCADCNLNLK-QKGYFFVEGELYCETHARARTSG 85 (89)
T ss_dssp CCEESSSCEECTTTCCCSSSCCCTT-TSCCEEETTEEECHHHHHHHSSS
T ss_pred cEEEECCceECccCCEecCCCCCCC-CCCeEeECCEEECHHHHHHHhCC
Confidence 4577899999999999999999995 44677789999999999988864
No 60
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.88 E-value=1e-09 Score=73.95 Aligned_cols=47 Identities=26% Similarity=0.354 Sum_probs=44.6
Q ss_pred ccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..++.||.||..|+..|+..|..++||+...+++||..+||++.+||
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 51 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIK 51 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHee
Confidence 45678999999999999999999999999999999999999999997
No 61
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=6.3e-11 Score=78.75 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=42.0
Q ss_pred HHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 8 ~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
.+++|.++.||..||+|..|+++|..+ .|...++++||+.||..++..
T Consensus 18 ~~~~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 18 RVIKAMNNSWHPECFRCDLCQEVLADI-GFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CCEEETTEEECTTTSBCSSSCCBCSSS-CCEEETTEEECHHHHHHHHCC
T ss_pred eEEEECcccccccCCEeCCCCCcCCCC-ccEeECCeEECHHHhhhhcCC
Confidence 356789999999999999999999544 688889999999999998864
No 62
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.87 E-value=9.3e-11 Score=77.70 Aligned_cols=46 Identities=26% Similarity=0.637 Sum_probs=41.8
Q ss_pred HHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
++.+.++.||..||+|..|+++| .+..|.+.++++||+.||..++.
T Consensus 19 ~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 19 GITYQDQPWHADCFVCVTCSKKL-AGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CEEETTEEECTTTTBCTTTCCBC-TTSCEEECSSCEEEHHHHHHHHT
T ss_pred eEEECccccccCcCEECCCCCCC-CCCccEeECCEEECHHHhHHHhc
Confidence 46788999999999999999999 47789889999999999998875
No 63
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.87 E-value=8.9e-10 Score=77.90 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=46.2
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhC---------------cchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG---------------LSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lg---------------L~~~~Vq 195 (196)
..+.||.||.|+..|+..|+..|+.++||+...|++||..++ |++.+|+
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~ 67 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 67 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHH
Confidence 446788999999999999999999999999999999999999 9999987
No 64
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=98.86 E-value=5.1e-11 Score=88.54 Aligned_cols=53 Identities=30% Similarity=0.614 Sum_probs=47.8
Q ss_pred CChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
|.+.|.+|+|.+..||..||+|..|+++|..|+.|.+.++++||..||..+++
T Consensus 76 I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 76 IRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128 (131)
T ss_dssp ECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHH
T ss_pred cCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhh
Confidence 55566788899999999999999999999779999999999999999998875
No 65
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=6.2e-11 Score=80.12 Aligned_cols=52 Identities=25% Similarity=0.422 Sum_probs=43.2
Q ss_pred CChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeec-cchhhhhhc
Q psy17504 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCR-PHYEILRHR 56 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~-~~y~~~~~~ 56 (196)
|.+.++| .|.++.||..||+|..|+++|. +..|..+++++||+ .||..++..
T Consensus 19 I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~cy~~~f~~ 71 (76)
T 2cu8_A 19 VYFAEKV-SSLGKDWHKFCLKCERCSKTLT-PGGHAEHDGKPFCHKPCYATLFGS 71 (76)
T ss_dssp CCTTTEE-EETTEEEETTTCBCSSSCCBCC-TTSCEEETTEEECTTTHHHHHSCS
T ss_pred eECCeEE-EECCeEeeCCCCCCCCCCCccC-CCceEeECCEEecchHHHHHhccc
Confidence 4444543 5889999999999999999994 66788899999999 799988753
No 66
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=98.85 E-value=1.4e-09 Score=70.39 Aligned_cols=43 Identities=28% Similarity=0.432 Sum_probs=39.4
Q ss_pred hhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 153 MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 153 ~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.||.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 5899999999999999999999999999999999999999997
No 67
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=8.3e-11 Score=78.10 Aligned_cols=45 Identities=31% Similarity=0.671 Sum_probs=40.9
Q ss_pred HHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 10 ~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
+.|.++.||..||+|..|+++| .+..|...++++||+.||..++.
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~ 64 (70)
T 2d8z_A 20 VTYREQPWHKECFVCTACRKQL-SGQRFTARDDFAYCLNCFCDLYA 64 (70)
T ss_dssp EESSSSEEETTTSBCSSSCCBC-TTSCCEESSSSEECHHHHHHHTC
T ss_pred EEECccccCCCCCccCCCCCcC-CcCceEeeCCeEECHHHHHHHhc
Confidence 5788999999999999999999 57788889999999999998875
No 68
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.84 E-value=1.4e-09 Score=73.14 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=42.7
Q ss_pred chhhcccchhhHhhhhhhhcc-cCCCChHHHHHHHHHhCcchhhhc
Q psy17504 151 KRMRTSFKHHQLRTMKSYFNI-NQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 151 rR~RT~ft~~Ql~~L~~~F~~-~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
++.||.||..|+..|+..|.. ++||+...+++||..+||++.+||
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~ 48 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 48 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 467899999999999999995 999999999999999999999997
No 69
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3.9e-11 Score=81.17 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=40.5
Q ss_pred HHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhh
Q psy17504 7 ELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53 (196)
Q Consensus 7 ~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~ 53 (196)
+.++.|.++.||..||+|..|+++| .+..|...++++||+.||..|
T Consensus 32 ~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 32 SSVVAYEGQSWHDYCFHCKKCSVNL-ANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCEEEETTEEEETTTCBCSSSCCBC-TTSCCCEETTEECCHHHHHHC
T ss_pred ceeEEECcceeCcccCEehhcCCCC-CCCccEeECCEEEChHHhccC
Confidence 3567789999999999999999999 477888899999999999753
No 70
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.84 E-value=1.5e-09 Score=71.08 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=44.2
Q ss_pred cchhhcccchhhHhhhhhhh---cccCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 150 TKRMRTSFKHHQLRTMKSYF---NINQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 150 ~rR~RT~ft~~Ql~~L~~~F---~~~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
.++.||.|+..|+..|+..| ..++||+..++++||..+||++.+|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 52 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 52 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 46789999999999999999 999999999999999999999999973
No 71
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.84 E-value=8.5e-11 Score=87.06 Aligned_cols=46 Identities=33% Similarity=0.540 Sum_probs=41.4
Q ss_pred HHHHHhHHHhhhhhhhhhhcceec-cCCccccccceeeeccchhhhh
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLT-KGDLFGMRDEMIYCRPHYEILR 54 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~-~G~~f~~~~~~~~C~~~y~~~~ 54 (196)
++.|.++.||..||+|..|++.|. .|..|+.+++++||+.||..+|
T Consensus 76 ~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 76 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp EEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred EEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 467889999999999999999996 3778999999999999999876
No 72
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-09 Score=77.70 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=44.7
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHh---------------------Ccchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT---------------------GLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~l---------------------gL~~~~Vq 195 (196)
++.||.||.|+..|+.+|+..|+.++||+...|++||..+ .|++.+|+
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~ 72 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVY 72 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhccccccccccccee
Confidence 4678899999999999999999999999999999999999 78888886
No 73
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.83 E-value=1.7e-09 Score=77.17 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=40.9
Q ss_pred cccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHH------------------hC---cchhhhc
Q psy17504 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK------------------TG---LSKRVLQ 195 (196)
Q Consensus 146 ~~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~------------------lg---L~~~~Vq 195 (196)
..++.||.||.|+..|+..|+..|+.++||+...|++||.. +| |++.+|+
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~ 75 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 75 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceee
Confidence 34577889999999999999999999999999999999999 88 9999986
No 74
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.83 E-value=9.4e-11 Score=81.85 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
++.|.++.||..||+|..|+++|. +..|...++++||+.||..++..
T Consensus 39 ~v~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~f~~ 85 (90)
T 2dar_A 39 FLVALGKSWHPEEFNCAHCKNTMA-YIGFVEEKGALYCELCYEKFFAS 85 (90)
T ss_dssp EEEETTEEECTTTCBCSSSCCBCS-SSCBEESSSCEECHHHHHHHTSC
T ss_pred EEEECCccccccCCccCCCCCCCC-CCEeEeECCEEECHHHHHHHcCC
Confidence 456889999999999999999994 66788899999999999998853
No 75
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.82 E-value=7.7e-11 Score=82.47 Aligned_cols=52 Identities=33% Similarity=0.698 Sum_probs=43.4
Q ss_pred CChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
|.+.++| .|.++.||..||+|..|+++|..+ .|...++++||+.||..++..
T Consensus 25 I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~~f~~ 76 (91)
T 2d8y_A 25 VYPMERL-LANQQVFHISCFRCSYCNNKLSLG-TYASLHGRIYCKPHFNQLFKS 76 (91)
T ss_dssp CCTTSEE-ECSSSEEETTTCBCTTTCCBCCTT-TCCCSSSCCCCHHHHHHHSCC
T ss_pred cCCceeE-EECCCEECCCCCeeCCCCCCCCCC-CcEeECCEEECHHHHHHHhCC
Confidence 4444544 789999999999999999999554 477889999999999998864
No 76
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.81 E-value=8.4e-11 Score=80.40 Aligned_cols=52 Identities=23% Similarity=0.523 Sum_probs=42.9
Q ss_pred CChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
|.+.+ ++.+.++.||..||+|..|+++|. +..|..+++++||+.||..++..
T Consensus 17 I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~ 68 (81)
T 1a7i_A 17 VYHAE-EVQCDGRSFHRCCFLCMVCRKNLD-STTVAIHDAEVYCKSCYGKKYGP 68 (81)
T ss_dssp CSSTT-EEEETTEEEESSSEECSSSCCEEC-SSCCEEETTEEECSHHHHHHCC-
T ss_pred ccCce-eEEeCCcccccccCccCCCCCCCC-CCCeEeeCCEEECHHHHHHHhCC
Confidence 44444 357889999999999999999994 45688889999999999988754
No 77
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.80 E-value=2e-09 Score=74.25 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=44.1
Q ss_pred ccchhhcccchhhHhhhhhhhcc---cCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~---~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
+.|+.|+.|+..|+..|+..|.. ++||+..+|++||..+||++.||++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~ 56 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISN 56 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 56778999999999999999877 6999999999999999999999973
No 78
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.80 E-value=2.8e-09 Score=71.48 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=42.0
Q ss_pred hhhcccchhhHhhhhhhhcc-cCCCChHHHHHHHHHhCcchhhhc
Q psy17504 152 RMRTSFKHHQLRTMKSYFNI-NQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 152 R~RT~ft~~Ql~~L~~~F~~-~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.||.|+..|+..|+..|.. ++||+...+++||..+||++.+||
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 46899999999999999996 999999999999999999999997
No 79
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.79 E-value=2.4e-10 Score=78.30 Aligned_cols=45 Identities=31% Similarity=0.720 Sum_probs=40.0
Q ss_pred HHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 10 ~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
+.|.++.||..||+|..|+++|. + .|+.+++++||+.||..+|..
T Consensus 31 v~a~~~~wH~~CF~C~~C~~~L~-~-~~~~~~g~~yC~~~y~~~fg~ 75 (80)
T 2dj7_A 31 LLALDKQWHVSCFKCQTCSVILT-G-EYISKDGVPYCESDYHAQFGS 75 (80)
T ss_dssp EEETTEEECTTTCBCSSSCCBCS-S-CCEEETTEEECTTHHHHHTTC
T ss_pred EEECCcccccccCCcCcCCCCcC-C-CeEEECCEEECHHHHHHHcCC
Confidence 46789999999999999999995 5 688899999999999998853
No 80
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.79 E-value=2.5e-09 Score=71.83 Aligned_cols=46 Identities=26% Similarity=0.501 Sum_probs=43.7
Q ss_pred chhhcccchhhHhhhhhhh---cccCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 151 KRMRTSFKHHQLRTMKSYF---NINQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 151 rR~RT~ft~~Ql~~L~~~F---~~~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
||.||.|+..|+..|+..| ..++||+...++.||..+||++.+|++
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~ 50 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999 999999999999999999999999973
No 81
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.78 E-value=1.7e-10 Score=78.60 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=41.8
Q ss_pred HHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
+++|.++.||..||+|..|+++| .+..|.+.++++||+.||..++.
T Consensus 29 ~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~ 74 (80)
T 2cuq_A 29 GVTYRDQPWHRECLVCTGCQTPL-AGQQFTSRDEDPYCVACFGELFA 74 (80)
T ss_dssp CEESSSSEECTTTCBCSSSCCBC-TTCCEEECSSSEEEHHHHHHHTT
T ss_pred EEEECCchhhhhhCCcccCCCcC-CCCeeEeECCEEECHHHHHHHcC
Confidence 56789999999999999999999 57788889999999999998875
No 82
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.78 E-value=1.2e-10 Score=79.48 Aligned_cols=46 Identities=24% Similarity=0.430 Sum_probs=39.8
Q ss_pred HHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 8 ~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
.++.|.++.||..||+|..|+++|. +..| .+++++||..||..++.
T Consensus 28 ~~v~a~~~~~H~~CF~C~~C~~~L~-~~~f-~~~g~~yC~~cy~~~f~ 73 (79)
T 2cor_A 28 QPLIFKNDPYHPDHFNCANCGKELT-ADAR-ELKGELYCLPCHDKMGV 73 (79)
T ss_dssp CCCCCSSSCCCTTTSBCSSSCCBCC-TTCE-EETTEEECHHHHHTTSC
T ss_pred eEEEECcceeCCCCCEeCCCCCccC-CCCE-eECCEEeCHHHHHHhCC
Confidence 4567899999999999999999995 4455 78999999999998875
No 83
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3.9e-09 Score=71.39 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=40.7
Q ss_pred hhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 153 MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 153 ~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.|+.||..|+..|+..|..++||+...+++||..+||++.+|+
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREID 52 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 4567999999999999999999999999999999999999997
No 84
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=98.76 E-value=4e-09 Score=67.29 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=38.4
Q ss_pred cccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 155 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 155 T~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
|.||..|+..|+..|..++||+...|++||..+||++.+||
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhh
Confidence 78999999999999999999999999999999999999997
No 85
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.76 E-value=3e-10 Score=76.66 Aligned_cols=52 Identities=23% Similarity=0.446 Sum_probs=42.9
Q ss_pred CChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeec-cchhhhhhc
Q psy17504 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCR-PHYEILRHR 56 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~-~~y~~~~~~ 56 (196)
|.+.+. +.|.++.||..||+|..|+++|.. ..|...++++||+ .||..++..
T Consensus 10 I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~~-~~~~~~~g~~yC~~~cy~~~f~~ 62 (76)
T 1iml_A 10 VYFAER-VTSLGKDWHRPCLKCEKCGKTLTS-GGHAEHEGKPYCNHPCYSAMFGP 62 (76)
T ss_dssp CCGGGE-EEETTEEEETTTCBCTTTCCBCCT-TTEEEETTEEEETTTHHHHHSSC
T ss_pred EECceE-EEECCccccCCCCCccccCccCCC-CceECcCCeEeeCHHHHHHHhCc
Confidence 444544 467899999999999999999954 4788899999999 699988753
No 86
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.75 E-value=1e-10 Score=76.79 Aligned_cols=50 Identities=22% Similarity=0.496 Sum_probs=41.9
Q ss_pred CChHHHHHHHHhHHHh--hhhhhhhhhcceeccCCccccccceeee-ccchhhh
Q psy17504 3 ISSSELVMRARDLVFH--LHCFTCISCGILLTKGDLFGMRDEMIYC-RPHYEIL 53 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H--~~CF~C~~C~~~L~~G~~f~~~~~~~~C-~~~y~~~ 53 (196)
|.+.+.++.|.++.|| ..||+|..|+++| .|..|..+++++|| ..+|..+
T Consensus 12 I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 12 IDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp ECTTSCEEEETTEEEETTTTTSBCTTTCCBC-TTSCCEEETTEEESSHHHHHTT
T ss_pred eccCceEEEECCCccCCCCCCEECCCCCCcC-CCCceEEECCEEecCHHHhhhh
Confidence 3444456788999999 9999999999999 67789999999999 7777654
No 87
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=98.75 E-value=3.6e-09 Score=81.68 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=42.3
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.++||.||.|+..|+..|+..|..++||+...|++||..+||++++||
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 146 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 146 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhh
Confidence 467889999999999999999999999999999999999999999997
No 88
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=98.75 E-value=3.6e-09 Score=80.55 Aligned_cols=49 Identities=18% Similarity=0.428 Sum_probs=43.1
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+++||.||.|+..|+..|+..|..++||+...|++||..+||++++||
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhch
Confidence 3466788999999999999999999999999999999999999999997
No 89
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.75 E-value=1.1e-10 Score=82.94 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=45.2
Q ss_pred CChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
|.+.+.++.+.++.||..||+|..|+++| .+..|+..++++||+.||..++.
T Consensus 15 I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~~ 66 (101)
T 2cup_A 15 IGADSKEVHYKNRFWHDTCFRCAKCLHPL-ANETFVAKDNKILCNKCTTREDS 66 (101)
T ss_dssp CCSSSCEEEETTEEEETTTCCCSSSCCCT-TSSCCEEETTEEECHHHHTTCCC
T ss_pred ccCCceEEEECccChhhcCCcccccCCCC-CcCeeECcCCEEEChhHhhhhcC
Confidence 44445677889999999999999999999 67788889999999999988774
No 90
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=98.74 E-value=4.3e-09 Score=80.44 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=45.7
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.++||.||.|+..|+..|+..|..++||+...|++||..+||++++||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 138 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVR 138 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhH
Confidence 467789999999999999999999999999999999999999999997
No 91
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.74 E-value=2.6e-10 Score=77.92 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=41.6
Q ss_pred HHHHHHhHHHhhhhhhhhhhcceeccCCccccc-cceeeeccchhhhhh
Q psy17504 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMR-DEMIYCRPHYEILRH 55 (196)
Q Consensus 8 ~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~-~~~~~C~~~y~~~~~ 55 (196)
.+++|.++.||..||+|..|+++| .+..|.+. ++++||+.||..++.
T Consensus 28 ~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~g~~yC~~cy~~~f~ 75 (81)
T 2dlo_A 28 RILRAMGKAYHPGCFTCVVCHRGL-DGIPFTVDATSQIHCIEDFHRKFA 75 (81)
T ss_dssp CCEEETTEEECTTTCBCSSSCCBC-TTSCEECCTTCCCEEHHHHHHHTT
T ss_pred eeEEECCccccHHhcCcccCCCcc-CCCeeEECCCCEEECHHHHHHHhc
Confidence 467889999999999999999999 47788776 789999999998875
No 92
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.74 E-value=4.5e-09 Score=72.91 Aligned_cols=46 Identities=26% Similarity=0.501 Sum_probs=43.1
Q ss_pred chhhcccchhhHhhhhhhh---cccCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 151 KRMRTSFKHHQLRTMKSYF---NINQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 151 rR~RT~ft~~Ql~~L~~~F---~~~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
||.||.|+..|+..|+..| ..++||+..++++||..+||++.+|++
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~ 50 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999 999999999999999999999999973
No 93
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.74 E-value=2.8e-10 Score=77.49 Aligned_cols=46 Identities=30% Similarity=0.529 Sum_probs=40.8
Q ss_pred HHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
+++|.++.||..||+|..|+++|.. ..|...++++||+.||..++.
T Consensus 29 ~v~a~~~~~H~~CF~C~~C~~~L~~-~~~~~~~~~~yC~~~y~~~f~ 74 (80)
T 1x3h_A 29 YLSAMDTVWHPECFVCGDCFTSFST-GSFFELDGRPFCELHYHHRRG 74 (80)
T ss_dssp CEEETTEEECTTTCBCSSSCCBSCS-SCCEESSSCEECHHHHHHHHS
T ss_pred eEEECCCeEecCcCChhhCCCCCCC-CcEEeECCEEECHHHHHHHcC
Confidence 4678999999999999999999954 468888999999999998875
No 94
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=98.73 E-value=2.5e-10 Score=90.14 Aligned_cols=54 Identities=39% Similarity=0.691 Sum_probs=47.4
Q ss_pred CChHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
|.+.+.+++|.++.||..||+|..|+++|..|+.|++.++++||+.||..++..
T Consensus 79 I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 79 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALIN 132 (188)
T ss_dssp ECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC-
T ss_pred cccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcc
Confidence 555667888999999999999999999997788999999999999999887653
No 95
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.73 E-value=2.9e-10 Score=82.82 Aligned_cols=49 Identities=27% Similarity=0.478 Sum_probs=43.5
Q ss_pred HHHHHhHHHhhhhhhhhhhcceecc-CCccccccceeeeccchhhhhhcc
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTK-GDLFGMRDEMIYCRPHYEILRHRD 57 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~-G~~f~~~~~~~~C~~~y~~~~~~~ 57 (196)
+++|.++.||..||+|..|+++|.. |..|+.+++++||+.||..+|...
T Consensus 18 ~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 18 FLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp EEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred EEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 5678899999999999999999963 678889999999999999998754
No 96
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=98.73 E-value=4.9e-09 Score=72.85 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=44.3
Q ss_pred ccchhhcccchhhHhhhhhhhcc---cCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~---~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
++++.||.|+..|+..|+..|.. ++||+..++++||..+||++.+|++
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~ 76 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 76 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 44556999999999999999999 9999999999999999999999973
No 97
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=98.72 E-value=5.1e-09 Score=81.21 Aligned_cols=49 Identities=27% Similarity=0.363 Sum_probs=38.5
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+++||.||.|+..|+..|+..|..++||+...|++||..+||++++||
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 144 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhh
Confidence 3567889999999999999999999999999999999999999999997
No 98
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.67 E-value=5.1e-10 Score=76.43 Aligned_cols=48 Identities=21% Similarity=0.428 Sum_probs=41.3
Q ss_pred HHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 8 ~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
.+++|.++.||..||+|..|+++|..|..|.+.+..+||+.||..++.
T Consensus 28 ~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 28 EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 467889999999999999999999778777766667899999987754
No 99
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.67 E-value=8.9e-09 Score=79.61 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=42.7
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
..+.||.||.|+..|+..|+..|+.++||+...|++||..+||++.+||+
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~ 143 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 143 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 34678899999999999999999999999999999999999999999973
No 100
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.66 E-value=1e-08 Score=66.13 Aligned_cols=43 Identities=30% Similarity=0.498 Sum_probs=41.1
Q ss_pred hcccchhhHhhhhhhhcc---cCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 154 RTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 154 RT~ft~~Ql~~L~~~F~~---~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
|+.|+..|+..|+..|.. ++||+..++++||..+||++.+|++
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~ 47 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 47 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 689999999999999999 9999999999999999999999973
No 101
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.65 E-value=6.5e-10 Score=81.90 Aligned_cols=48 Identities=31% Similarity=0.510 Sum_probs=42.6
Q ss_pred HHHHHhHHHhhhhhhhhhhcceec-cCCccccccceeeeccchhhhhhc
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLT-KGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~-~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
++.|.++.||..||+|..|+++|. .|..|+.+++++||+.||..++..
T Consensus 20 ~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~ 68 (122)
T 1m3v_A 20 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN 68 (122)
T ss_dssp CEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC
T ss_pred EEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC
Confidence 456889999999999999999995 357788899999999999999865
No 102
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.63 E-value=1.6e-08 Score=77.56 Aligned_cols=48 Identities=27% Similarity=0.463 Sum_probs=45.4
Q ss_pred cccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 148 ~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+++||.||.|+..|+..|+..|..++||+...|++||..+||++++||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~ 141 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhhee
Confidence 356778999999999999999999999999999999999999999997
No 103
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=98.60 E-value=8.7e-10 Score=81.32 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHhHHHh--hhhhhhhhhcceeccCCccccccceeeeccchhhhh
Q psy17504 2 GISSSELVMRARDLVFH--LHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILR 54 (196)
Q Consensus 2 ~i~~~~~v~~a~~~~~H--~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~ 54 (196)
.|.+.+.+|++.+..|| ..||+|..|+++| .|+.|.+.++++||..||..++
T Consensus 72 ~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 72 AIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp BCCTTSCEEEETTEEEESSTTTSBCTTTCCBC-TTSEEEEETTEEESSHHHHHSC
T ss_pred cCCcCceEEECCCCEeeCCCCCcCcCCCCCcc-CCCeeEeECCEEcchHHhhhhc
Confidence 46666778899999999 9999999999999 4889999999999999998764
No 104
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.57 E-value=2.3e-08 Score=68.84 Aligned_cols=45 Identities=29% Similarity=0.450 Sum_probs=41.1
Q ss_pred hhhcccchhhHhhhhhhhcc---cCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 152 RMRTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 152 R~RT~ft~~Ql~~L~~~F~~---~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
+.|+.|+..|+..|+..|.. ++||+...+++||..+||++.+|++
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~ 51 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 51 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHccc
Confidence 34566999999999999999 9999999999999999999999973
No 105
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.56 E-value=2.5e-08 Score=66.99 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=40.4
Q ss_pred hhhcccchhhHhhhhhhh-cccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 152 RMRTSFKHHQLRTMKSYF-NINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 152 R~RT~ft~~Ql~~L~~~F-~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.|+.++..|+.+||..| ..++||+...|++||..+||++++||
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVq 54 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 345567889999999999 99999999999999999999999997
No 106
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=98.56 E-value=2.5e-09 Score=78.86 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=41.7
Q ss_pred HHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
++.|.++.||..||+|..|+++| .+..|+.+++++||+.||..++.
T Consensus 18 ~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~~~ 63 (126)
T 2xqn_T 18 YTQAENQNWHLKHFCCFDCDSIL-AGEIYVMVNDKPVCKPCYVKNHA 63 (126)
T ss_dssp EEEETTEEECGGGSBCTTTCCBC-TTSEEEEETTEEEEHHHHHHHSC
T ss_pred EEeeCCCCccCCCCCcCCCCCCC-CcCEEEeECCEEechHHhCcCcC
Confidence 46788999999999999999999 57789899999999999998875
No 107
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.54 E-value=3.8e-08 Score=68.72 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=39.0
Q ss_pred ccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 156 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 156 ~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.||..||.+|+..|..++||+...|++||..|||++++||
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVk 56 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCe
Confidence 7899999999999999999999999999999999999997
No 108
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.54 E-value=4e-08 Score=64.62 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=36.5
Q ss_pred chhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 158 KHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 158 t~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
|..||.+|+..|..++||+..+|++||..|||++++|+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVk 49 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIK 49 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 56899999999999999999999999999999999997
No 109
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=6.7e-08 Score=67.44 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=38.6
Q ss_pred ccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 156 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 156 ~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.||..||.+|+..|..++||+...|++||..+||++++||
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 58 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREID 58 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhcc
Confidence 3899999999999999999999999999999999999997
No 110
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=98.52 E-value=3.4e-09 Score=78.52 Aligned_cols=48 Identities=27% Similarity=0.483 Sum_probs=42.4
Q ss_pred HHHHHhHHHhhhhhhhhhhcceecc-CCccccccceeeeccchhhhhhc
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTK-GDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~-G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
++.|.++.||..||+|..|+++|.. |..|+.+++++||+.||..++..
T Consensus 17 ~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 65 (131)
T 2xjy_A 17 FLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ 65 (131)
T ss_dssp EEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC
T ss_pred EEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC
Confidence 4568899999999999999999963 67888899999999999998864
No 111
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=1.1e-07 Score=62.35 Aligned_cols=40 Identities=25% Similarity=0.495 Sum_probs=37.4
Q ss_pred ccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 156 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 156 ~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.++..|+..|+..|..++||+...|++||..+||++++||
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVq 48 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcC
Confidence 3457899999999999999999999999999999999997
No 112
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=98.45 E-value=6.1e-09 Score=82.09 Aligned_cols=48 Identities=31% Similarity=0.528 Sum_probs=42.9
Q ss_pred HHHHHhHHHhhhhhhhhhhcceecc-CCccccccceeeeccchhhhhhc
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTK-GDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~-G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
++.|.++.||..||+|..|+++|.. |..|+.+++++||+.||..++..
T Consensus 20 ~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~ 68 (188)
T 1rut_X 20 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN 68 (188)
T ss_dssp EEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC
T ss_pred eEEecCcEecccCcccCCCCcccccCCceEEEeCCcccccccccccccc
Confidence 4567899999999999999999965 67888899999999999998865
No 113
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.44 E-value=3.2e-08 Score=78.60 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=43.3
Q ss_pred ccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhC---------------------cchhhhcC
Q psy17504 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG---------------------LSKRVLQN 196 (196)
Q Consensus 147 ~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lg---------------------L~~~~Vq~ 196 (196)
.++.||.||.|+..|+..|+..|+.++||+...|++||..++ |++.+|++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~ 182 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 182 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccch
Confidence 457788999999999999999999999999999999999999 99999873
No 114
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.44 E-value=5.7e-08 Score=78.30 Aligned_cols=43 Identities=12% Similarity=0.320 Sum_probs=38.0
Q ss_pred cccccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhC
Q psy17504 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 188 (196)
Q Consensus 146 ~~~k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lg 188 (196)
..++.||.||.|+..|+..|+..|+.++||+...|++||..++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 4567889999999999999999999999999999999999988
No 115
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=98.43 E-value=5.2e-09 Score=82.70 Aligned_cols=50 Identities=28% Similarity=0.527 Sum_probs=42.1
Q ss_pred hHHHHHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 5 ~~~~v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
+.++| .+.++.||..||+|..|+++|.. ..|+.+++++||+.||..++..
T Consensus 127 ~~~~v-~a~~~~~H~~CF~C~~C~~~L~~-~~~~~~~g~~yC~~cy~~~f~~ 176 (192)
T 1b8t_A 127 AAEKV-IGAGKSWHKSCFRCAKCGKSLES-TTLADKDGEIYCKGCYAKNFGP 176 (192)
T ss_dssp SSSCE-EETTEEECTTTCBCTTTCCBCCS-SSEEEETTEEEEHHHHHHHTCC
T ss_pred CcEEE-ecCCCccchhcCCccccCCCCCC-CcccccCCEEeCHHHHHHhcCC
Confidence 34444 48899999999999999999954 4678899999999999998864
No 116
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.40 E-value=1.6e-07 Score=62.47 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=39.0
Q ss_pred cccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 155 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 155 T~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..+|..|+.+|+..|..++||+...|++||..+||++++||
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVq 49 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 49 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhhee
Confidence 36789999999999999999999999999999999999997
No 117
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=98.29 E-value=6.9e-08 Score=76.19 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=40.6
Q ss_pred HHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 10 ~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
+.|.++.||..||+|..|+++|. +..|+.+++++||+.||..++..
T Consensus 23 v~a~g~~wH~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 23 VQCEGSSFHKSCFLCMVCKKNLD-STTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp EEETTEEECTTTCBCTTTCCBCC-SSSEEEETTEEEEHHHHHHHHSC
T ss_pred EEeCCceecCCCCcCcccCCcCC-CCeeEecCCEeeChhhhHhhcCc
Confidence 35889999999999999999995 44688889999999999999864
No 118
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.25 E-value=6.1e-07 Score=58.74 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=34.2
Q ss_pred hhhHhhhhhhh-cccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 159 HHQLRTMKSYF-NINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 159 ~~Ql~~L~~~F-~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..|+.+||..| ..++||+...|++||..+||+++|||
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVk 46 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 34799999999 67999999999999999999999997
No 119
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.25 E-value=3.8e-08 Score=76.20 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=39.3
Q ss_pred HHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
++.|.++.||..||+|..|+++|. +..| .++|++||+.||..++..
T Consensus 21 ~~~a~~~~wH~~CF~C~~C~~~L~-~~~f-~~~g~~yC~~~y~~~f~~ 66 (169)
T 2rgt_A 21 ILKALDRHWHSKCLKCSDCHVPLA-ERCF-SRGESVYCKDDFFKRFGT 66 (169)
T ss_dssp CEECSSCEECTTTSBCTTTCCBCC-SCCE-ESSSCEECHHHHHHHHSC
T ss_pred EEEECCcEEccccCccCCCCCcCC-CCCc-ccCCeeeecccccccccc
Confidence 456789999999999999999994 4445 689999999999998853
No 120
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=98.24 E-value=4e-08 Score=76.97 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=39.0
Q ss_pred HHHHHhHHHhhhhhhhhhhcceeccCCccccccceeeeccchhhhhhc
Q psy17504 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 9 v~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
++.|.++.||..||+|..|+++|. +..| .+++++||+.||..++..
T Consensus 75 ~~~a~~~~wH~~CF~C~~C~~~L~-~~~f-~~~g~~yC~~~y~~~f~~ 120 (182)
T 2jtn_A 75 ILKALDRHWHSKCLKCSDCHVPLA-ERCF-SRGESVYCKDDFFKRFGT 120 (182)
T ss_dssp EEEETTEEECSSTTSCTTTCCCCS-SCCE-EETTEEECHHHHHHTTSC
T ss_pred eEEecCCeEccccCccCCCCCccC-CCce-eECCEeeecCcccccccc
Confidence 456789999999999999999994 4445 689999999999998753
No 121
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.16 E-value=1e-06 Score=58.10 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=37.5
Q ss_pred ccchhhHhhhhhhhc---ccCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 156 SFKHHQLRTMKSYFN---INQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 156 ~ft~~Ql~~L~~~F~---~~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
.|+..|+..|+..|. .++||+..++++||..+||++.+|++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~ 47 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNN 47 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhh
Confidence 689999999999999 99999999999999999999999973
No 122
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.3e-06 Score=57.85 Aligned_cols=37 Identities=19% Similarity=0.596 Sum_probs=35.1
Q ss_pred hhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 159 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 159 ~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.+|+..|+.+|+.|++|+..++..||..+||++++||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4589999999999999999999999999999999997
No 123
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=97.84 E-value=7.6e-06 Score=70.51 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=44.7
Q ss_pred ccchhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 149 k~rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
..++.|+.|+..|+..|++.|+.++||+..+|++||.++||+++|||+
T Consensus 364 ~~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~ 411 (421)
T 1mh3_A 364 AQTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 411 (421)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhH
Confidence 346788999999999999999999999999999999999999999973
No 124
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=97.53 E-value=3.3e-05 Score=53.62 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=37.4
Q ss_pred ccchhhHhhhhhhhcc---cCCCChHHHHHHHHHhCcchhhhcC
Q psy17504 156 SFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQN 196 (196)
Q Consensus 156 ~ft~~Ql~~L~~~F~~---~~~p~~~~r~~La~~lgL~~~~Vq~ 196 (196)
.|+..+...|+..|.. ++||+..+|++||..+||++.||++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~ 54 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCN 54 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 4778889999999877 9999999999999999999999974
No 125
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=93.11 E-value=0.023 Score=40.45 Aligned_cols=41 Identities=17% Similarity=0.027 Sum_probs=31.1
Q ss_pred HHHhhhhhhhh-----hhcceeccCCccccccceeeeccchhhhhh
Q psy17504 15 LVFHLHCFTCI-----SCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 15 ~~~H~~CF~C~-----~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
..|...|+.|. +|..++..|+.|.++++++||..||.....
T Consensus 62 ~~f~~~c~~c~~~~~~~~~~~~~~g~~f~~~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 62 RLGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA 107 (114)
T ss_dssp HHHTSCCSSCBSCSCCCSSCSSTTSSBCCCSSSCCCEEEECTTCCC
T ss_pred HHhCcccCcCCCCceeEcCCccCCCCeeEEcCCEeecchhhhcccc
Confidence 44556665543 366777789999999999999999987654
No 126
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=92.67 E-value=0.024 Score=40.80 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.6
Q ss_pred cCCccccccceeeeccchhhhhhc
Q psy17504 33 KGDLFGMRDEMIYCRPHYEILRHR 56 (196)
Q Consensus 33 ~G~~f~~~~~~~~C~~~y~~~~~~ 56 (196)
.|+.|+++++++||+.||.+++..
T Consensus 93 ~g~~f~~~~~~~yC~~~~~~~~~~ 116 (122)
T 1m3v_A 93 MGGEFGDEDERLITRLENTQFDAA 116 (122)
T ss_dssp CSCTTCCTTCCCCEECTTTTTTCC
T ss_pred CCCccEecCCEeEccCcchhchhh
Confidence 588899999999999999887643
No 127
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=81.44 E-value=0.055 Score=29.63 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=13.5
Q ss_pred CChHHHHHHHHhHHHhhhhh
Q psy17504 3 ISSSELVMRARDLVFHLHCF 22 (196)
Q Consensus 3 i~~~~~v~~a~~~~~H~~CF 22 (196)
+.+.|.++ +.++.||..||
T Consensus 13 Vy~~Ek~~-~~g~~~Hk~CF 31 (31)
T 1zfo_A 13 VYPTEKVN-CLDKFWHKACF 31 (31)
T ss_dssp CCGGGCCC-SSSSCCCGGGC
T ss_pred EecceeEE-ECCeEecccCC
Confidence 44455444 67899999998
No 128
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=64.33 E-value=2.3 Score=26.82 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=23.0
Q ss_pred hhhhhcceeccCCcccccc--ceeeeccchhhhh
Q psy17504 23 TCISCGILLTKGDLFGMRD--EMIYCRPHYEILR 54 (196)
Q Consensus 23 ~C~~C~~~L~~G~~f~~~~--~~~~C~~~y~~~~ 54 (196)
+|..|++.|..|...+-+. -++||..-....+
T Consensus 22 ~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 22 TCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp BCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 5899999999988765544 4889976554433
No 129
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.79 E-value=8.9 Score=24.85 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=30.1
Q ss_pred hhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 163 RTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 163 ~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
+.|+++|...+.+.-.....|+.+..|+-.+||
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvk 51 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVL 51 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHH
Confidence 568999999999999999999999999999886
No 130
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=41.64 E-value=6.8 Score=19.73 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=10.1
Q ss_pred hhhhhhcceeccC
Q psy17504 22 FTCISCGILLTKG 34 (196)
Q Consensus 22 F~C~~C~~~L~~G 34 (196)
|.|.+|.++...|
T Consensus 6 ffcetcskpwlvg 18 (26)
T 1loi_A 6 FFCETCSKPWLVG 18 (26)
T ss_dssp HHHHTSSCTTGGG
T ss_pred HHHHhcCCchhhh
Confidence 7799999986454
No 131
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=30.85 E-value=17 Score=22.39 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=19.6
Q ss_pred hhhhhcceeccCCccccccceeee-ccch
Q psy17504 23 TCISCGILLTKGDLFGMRDEMIYC-RPHY 50 (196)
Q Consensus 23 ~C~~C~~~L~~G~~f~~~~~~~~C-~~~y 50 (196)
.|..|...+ ..++-.+++|+.|| +.+.
T Consensus 9 aC~~C~c~V-s~~eai~~dGK~YCSe~Ca 36 (55)
T 1jjd_A 9 ACEPCLCNV-DPSKAIDRNGLYYCSEACA 36 (55)
T ss_dssp SSTTCCCCB-CTTTSEESSSCEESSHHHH
T ss_pred cCCCCeeEe-chHHhhhcCCeEEehHHHH
Confidence 377788877 45566778999999 4443
No 132
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=30.69 E-value=23 Score=23.08 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=25.3
Q ss_pred chhhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 151 rR~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
++.+..|+.++.......+. .. ....++|..+|++...|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g----~s~~~iA~~~gIs~sTl~ 56 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DG----ESKASVARDIGVPESTLR 56 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HT----CCHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CC----CCHHHHHHHHCcCHHHHH
Confidence 34556777777555544453 22 234578999999887764
No 133
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=24.38 E-value=48 Score=22.80 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=27.8
Q ss_pred hhcccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 153 MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 153 ~RT~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
.|..||.++...+-..+..+... ...++|..+|++...|.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~---~~~~~A~~~gvs~stl~ 43 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDL---RKGEIARRFNIPPSTLS 43 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTS---CHHHHHHHHTCCHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCC---cHHHHHHHhCCCHHHHH
Confidence 46789999987777666444333 23468999999887653
No 134
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=23.49 E-value=13 Score=21.84 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=19.4
Q ss_pred hhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 23 TCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 23 ~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
+|.+.++++ |...+-++||-.||.....
T Consensus 13 kCeTPnCpF-----~mSVnTQP~CHEC~errq~ 40 (49)
T 2eqg_A 13 KCETPNCPF-----FMSVNTQPLCHECSERRQK 40 (49)
T ss_dssp BCSSTTCCS-----BCCTTTTTSCHHHHHHHHT
T ss_pred eecCCCCCe-----EEEecCccchHHHHHHHhh
Confidence 355555443 5567899999999986643
No 135
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=23.11 E-value=55 Score=23.41 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=28.5
Q ss_pred chhhcccchhhHhhhhhhh-cccCCCChHHHHHHHH----Hh--Ccchhhh
Q psy17504 151 KRMRTSFKHHQLRTMKSYF-NINQNPDAKDLKQLAQ----KT--GLSKRVL 194 (196)
Q Consensus 151 rR~RT~ft~~Ql~~L~~~F-~~~~~p~~~~r~~La~----~l--gL~~~~V 194 (196)
++.|..+|.+|..+|-..+ +.++-. ...+||. .+ +++...|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~---~q~~la~wa~~~f~~~is~sti 53 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRS---GQQDLIEWFREKFGKDISQPSV 53 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCC---CHHHHHHHHHHHHSSCCSSSST
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHCCCCcHHHH
Confidence 5578899999999999888 666544 3445666 77 5554443
No 136
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=21.91 E-value=39 Score=20.10 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=23.6
Q ss_pred cccchhhHhhhhhhhcccCCCChHHHHHHHHHhCcchhhhc
Q psy17504 155 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195 (196)
Q Consensus 155 T~ft~~Ql~~L~~~F~~~~~p~~~~r~~La~~lgL~~~~Vq 195 (196)
..|+.++...+...+... ........++|..+|++...|.
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~ 43 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQ 43 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHH
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHH
Confidence 356666665554444322 2211225689999999887764
No 137
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=21.48 E-value=25 Score=22.90 Aligned_cols=34 Identities=12% Similarity=-0.058 Sum_probs=25.1
Q ss_pred hhhhhhhhcceeccCCccccccceeeeccchhhhhh
Q psy17504 20 HCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRH 55 (196)
Q Consensus 20 ~CF~C~~C~~~L~~G~~f~~~~~~~~C~~~y~~~~~ 55 (196)
.=|.|.+|...+ -+...+..|..||+.+-...+.
T Consensus 13 ~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 13 DEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp TTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHH
T ss_pred hheECcccCchh--cCCeECCCCCEECHHHHHHHHh
Confidence 358899998877 3555556899999988766553
No 138
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.35 E-value=63 Score=22.44 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=26.4
Q ss_pred hhhcccchhhHhhhhhhhcccCCCChH-HHHHHHHHhCcchhhh
Q psy17504 152 RMRTSFKHHQLRTMKSYFNINQNPDAK-DLKQLAQKTGLSKRVL 194 (196)
Q Consensus 152 R~RT~ft~~Ql~~L~~~F~~~~~p~~~-~r~~La~~lgL~~~~V 194 (196)
.....-|.+|++.=+.....+ .++.. ....|+.++|.++..+
T Consensus 15 ~~~~~aTaeQ~rLAq~i~~~~-d~d~eekVk~L~EmtG~seeeA 57 (104)
T 1wj7_A 15 KQRPQATAEQIRLAQMISDHN-DADFEEKVKQLIDITGKNQDEC 57 (104)
T ss_dssp CCSSSSSHHHHHHHHHHHHSC-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred ccccccCHHHHHHHHHHhcCC-cccHHHHHHHHHHhhCCCHHHH
Confidence 344567899988666555443 34443 3356777779888765
No 139
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=20.02 E-value=40 Score=17.55 Aligned_cols=12 Identities=33% Similarity=1.146 Sum_probs=6.3
Q ss_pred hhhhhhhhccee
Q psy17504 20 HCFTCISCGILL 31 (196)
Q Consensus 20 ~CF~C~~C~~~L 31 (196)
.|..|..|.-.|
T Consensus 6 sclvcaacsvel 17 (31)
T 2lbz_A 6 SCLVCAACSVEL 17 (31)
T ss_dssp GGGGGGGCCSCS
T ss_pred HHHHHHHhHHHH
Confidence 355555565443
Done!