Your job contains 1 sequence.
>psy17504
MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG
SAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLHSG
DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDL
KQLAQKTGLSKRVLQN
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17504
(196 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E1BM14 - symbol:LHX2 "Uncharacterized protein" ... 230 3.6e-43 3
UNIPROTKB|E2RPC3 - symbol:LHX2 "Uncharacterized protein" ... 230 3.6e-43 3
UNIPROTKB|P50458 - symbol:LHX2 "LIM/homeobox protein Lhx2... 230 3.6e-43 3
UNIPROTKB|C4TJC6 - symbol:Lhx2 "LIM homeobox protein 2" s... 230 3.6e-43 3
MGI|MGI:96785 - symbol:Lhx2 "LIM homeobox protein 2" spec... 230 3.6e-43 3
UNIPROTKB|D4A380 - symbol:Lhx2 "LIM/homeobox protein Lhx2... 230 3.6e-43 3
UNIPROTKB|H7C0H1 - symbol:LHX2 "LIM/homeobox protein Lhx2... 230 4.4e-43 3
UNIPROTKB|G3N0G6 - symbol:LHX2 "Uncharacterized protein" ... 230 6.6e-43 3
RGD|71076 - symbol:Lhx2 "LIM homeobox 2" species:10116 "R... 230 8.1e-43 3
UNIPROTKB|P36198 - symbol:Lhx2 "LIM/homeobox protein Lhx2... 230 8.1e-43 3
UNIPROTKB|E2R2S6 - symbol:LHX9 "Uncharacterized protein" ... 230 1.5e-41 2
UNIPROTKB|H0YL54 - symbol:LHX9 "LIM/homeobox protein Lhx9... 230 1.5e-41 2
UNIPROTKB|E1BSF2 - symbol:LHX9 "LIM/homeobox protein Lhx9... 227 4.1e-41 2
UNIPROTKB|Q58CW3 - symbol:LHX9 "LIM homeobox 9" species:9... 230 6.0e-41 2
RGD|727956 - symbol:Lhx9 "LIM homeobox 9" species:10116 "... 230 7.9e-41 2
UNIPROTKB|Q80W90 - symbol:Lhx9 "LIM/homeobox protein Lhx9... 230 7.9e-41 2
ZFIN|ZDB-GENE-050417-210 - symbol:lhx9 "LIM homeobox 9" s... 230 9.7e-41 2
UNIPROTKB|E2R2S5 - symbol:LHX9 "Uncharacterized protein" ... 230 9.9e-41 2
UNIPROTKB|Q9NQ69 - symbol:LHX9 "LIM/homeobox protein Lhx9... 230 9.9e-41 2
MGI|MGI:1316721 - symbol:Lhx9 "LIM homeobox protein 9" sp... 230 9.9e-41 2
UNIPROTKB|A0JNI8 - symbol:LHX9 "LIM/homeobox protein Lhx9... 230 9.9e-41 2
UNIPROTKB|F1S5F5 - symbol:LHX9 "Uncharacterized protein" ... 230 9.9e-41 2
UNIPROTKB|F1NV70 - symbol:LHX9 "LIM/homeobox protein Lhx9... 227 1.8e-40 2
ZFIN|ZDB-GENE-051220-1 - symbol:lhx2b "LIM homeobox 2b" s... 230 2.3e-40 2
UNIPROTKB|E1BXQ7 - symbol:E1BXQ7 "Uncharacterized protein... 232 2.3e-40 2
UNIPROTKB|A2I8Z7 - symbol:lhx9 "LIM/homeobox protein Lhx9... 229 3.3e-40 2
UNIPROTKB|F1P3H6 - symbol:F1P3H6 "Uncharacterized protein... 232 3.4e-40 2
UNIPROTKB|Q68EY3 - symbol:lhx9 "LIM/homeobox protein Lhx9... 227 1.2e-39 2
UNIPROTKB|Q90881 - symbol:LHX9 "LIM/homeobox protein Lhx9... 226 1.2e-39 2
UNIPROTKB|A2PZF9 - symbol:lhx9 "LIM/homeobox protein Lhx9... 221 4.0e-37 2
FB|FBgn0000099 - symbol:ap "apterous" species:7227 "Droso... 231 4.0e-36 2
ZFIN|ZDB-GENE-091118-109 - symbol:lhx2a "LIM homeobox 2a"... 204 1.3e-33 2
WB|WBGene00006654 - symbol:ttx-3 species:6239 "Caenorhabd... 211 1.9e-30 2
FB|FBgn0013751 - symbol:Awh "Arrowhead" species:7227 "Dro... 144 1.1e-22 2
RGD|621849 - symbol:Isl2 "ISL LIM homeobox 2" species:101... 159 3.1e-19 2
UNIPROTKB|P50480 - symbol:Isl2 "Insulin gene enhancer pro... 159 3.1e-19 2
MGI|MGI:109156 - symbol:Isl2 "insulin related protein 2 (... 155 4.1e-19 2
ZFIN|ZDB-GENE-980526-562 - symbol:isl2a "islet2a" species... 149 5.9e-19 2
UNIPROTKB|Q96A47 - symbol:ISL2 "Insulin gene enhancer pro... 155 6.7e-19 2
ZFIN|ZDB-GENE-980526-112 - symbol:isl1 "islet1" species:7... 148 6.7e-19 2
UNIPROTKB|D6RAK3 - symbol:ISL1 "Insulin gene enhancer pro... 148 7.5e-19 2
ZFIN|ZDB-GENE-990415-133 - symbol:isl2b "islet2b" species... 148 7.5e-19 2
UNIPROTKB|E1BM60 - symbol:ISL2 "Uncharacterized protein" ... 155 8.5e-19 2
UNIPROTKB|P53410 - symbol:ISL2 "Insulin gene enhancer pro... 146 1.9e-18 2
UNIPROTKB|D6RBJ1 - symbol:ISL1 "Insulin gene enhancer pro... 148 3.3e-18 2
UNIPROTKB|A6H796 - symbol:ISL1 "ISL1 protein" species:991... 148 4.6e-18 2
UNIPROTKB|P61371 - symbol:ISL1 "Insulin gene enhancer pro... 148 4.6e-18 2
MGI|MGI:101791 - symbol:Isl1 "ISL1 transcription factor, ... 148 4.6e-18 2
RGD|61957 - symbol:Isl1 "ISL LIM homeobox 1" species:1011... 148 4.6e-18 2
UNIPROTKB|F1PP21 - symbol:ISL1 "Uncharacterized protein" ... 148 5.3e-18 2
UNIPROTKB|F1SMF7 - symbol:ISL1 "Uncharacterized protein" ... 148 5.3e-18 2
UNIPROTKB|P50211 - symbol:ISL1 "Insulin gene enhancer pro... 146 7.7e-18 2
WB|WBGene00002987 - symbol:lim-4 species:6239 "Caenorhabd... 143 1.1e-17 2
UNIPROTKB|H0YM35 - symbol:LHX2 "LIM/homeobox protein Lhx2... 207 8.6e-17 1
UNIPROTKB|F1NL26 - symbol:F1NL26 "Uncharacterized protein... 120 1.9e-15 2
UNIPROTKB|J9PBA6 - symbol:LHX8 "Uncharacterized protein" ... 122 2.6e-15 2
UNIPROTKB|C8YLT4 - symbol:Lhx8 "LIM homeobox 8" species:9... 122 2.6e-15 2
ZFIN|ZDB-GENE-031008-2 - symbol:lhx8a "LIM homeobox 8a" s... 123 2.9e-15 2
UNIPROTKB|F6QGM2 - symbol:LHX3 "LIM/homeobox protein Lhx3... 131 3.8e-15 2
UNIPROTKB|E9PGE3 - symbol:LHX8 "LIM/homeobox protein Lhx8... 122 5.0e-15 2
UNIPROTKB|F1P4G9 - symbol:LHX8 "Uncharacterized protein" ... 122 5.1e-15 2
UNIPROTKB|Q68G74 - symbol:LHX8 "LIM/homeobox protein Lhx8... 122 5.6e-15 2
ZFIN|ZDB-GENE-041025-1 - symbol:lhx6 "LIM homeobox 6" spe... 122 6.7e-15 2
UNIPROTKB|E2REU0 - symbol:LHX8 "Uncharacterized protein" ... 122 7.0e-15 2
UNIPROTKB|O97581 - symbol:LHX3 "LIM/homeobox protein Lhx3... 132 7.0e-15 2
UNIPROTKB|E2QZZ9 - symbol:LHX3 "Uncharacterized protein" ... 132 8.0e-15 2
UNIPROTKB|Q9UBR4 - symbol:LHX3 "LIM/homeobox protein Lhx3... 132 8.0e-15 2
MGI|MGI:102673 - symbol:Lhx3 "LIM homeobox protein 3" spe... 132 8.2e-15 2
UNIPROTKB|G3V8E3 - symbol:Lhx3 "Protein Lhx3" species:101... 132 8.2e-15 2
UNIPROTKB|G3V9E7 - symbol:Lhx3 "RCG45383, isoform CRA_b" ... 132 8.3e-15 2
UNIPROTKB|L7N0D8 - symbol:LHX3 "Uncharacterized protein" ... 132 8.4e-15 2
UNIPROTKB|Q2TEA4 - symbol:Lhx3 "LIM homeodomain 3 protein... 132 8.4e-15 2
UNIPROTKB|J9P8Y1 - symbol:LHX6 "Uncharacterized protein" ... 120 1.3e-14 2
UNIPROTKB|F1NLU0 - symbol:F1NLU0 "Uncharacterized protein... 120 1.3e-14 2
UNIPROTKB|E2RA99 - symbol:LHX6 "Uncharacterized protein" ... 120 1.5e-14 2
MGI|MGI:1306803 - symbol:Lhx6 "LIM homeobox protein 6" sp... 120 1.5e-14 2
UNIPROTKB|Q9UPM6 - symbol:LHX6 "LIM/homeobox protein Lhx6... 120 1.5e-14 2
MGI|MGI:1096343 - symbol:Lhx8 "LIM homeobox protein 8" sp... 122 1.6e-14 2
UNIPROTKB|G3V6V6 - symbol:Lhx8 "RCG29002" species:10116 "... 122 1.6e-14 2
RGD|1306174 - symbol:Lhx6 "LIM homeobox 6" species:10116 ... 120 1.8e-14 2
UNIPROTKB|E1B8I6 - symbol:LHX6 "Uncharacterized protein" ... 120 1.9e-14 2
ZFIN|ZDB-GENE-081105-153 - symbol:lhx8b "LIM homeobox 8b"... 118 1.9e-14 2
ZFIN|ZDB-GENE-060531-41 - symbol:si:ch211-236k19.2 "si:ch... 116 3.1e-14 2
ZFIN|ZDB-GENE-050114-2 - symbol:lmx1bb "LIM homeobox tran... 130 3.5e-14 2
UNIPROTKB|P53412 - symbol:LHX3 "LIM/homeobox protein Lhx3... 131 1.3e-13 2
UNIPROTKB|E1BBB7 - symbol:LHX8 "Uncharacterized protein" ... 117 2.1e-13 2
UNIPROTKB|F1SLQ9 - symbol:LHX6 "Uncharacterized protein" ... 120 4.1e-13 2
ZFIN|ZDB-GENE-980526-131 - symbol:lhx3 "LIM homeobox 3" s... 130 4.8e-13 2
ZFIN|ZDB-GENE-041014-332 - symbol:lmx1a "LIM homeobox tra... 123 8.0e-13 2
UNIPROTKB|H9L2C7 - symbol:LHX4 "Uncharacterized protein" ... 127 1.2e-12 2
UNIPROTKB|H9L043 - symbol:H9L043 "Uncharacterized protein... 120 1.2e-12 2
UNIPROTKB|P36200 - symbol:lhx3 "LIM/homeobox protein Lhx3... 127 4.0e-12 2
UNIPROTKB|F1S229 - symbol:LMX1A "Uncharacterized protein"... 111 5.3e-12 2
UNIPROTKB|I3L863 - symbol:LMX1A "Uncharacterized protein"... 111 5.3e-12 2
ZFIN|ZDB-GENE-060728-1 - symbol:lhx4 "LIM homeobox 4" spe... 127 6.3e-12 2
ZFIN|ZDB-GENE-050114-3 - symbol:lmx1ba "LIM homeobox tran... 121 1.3e-11 2
UNIPROTKB|F1MFM7 - symbol:LHX4 "Uncharacterized protein" ... 127 1.3e-11 2
UNIPROTKB|Q969G2 - symbol:LHX4 "LIM/homeobox protein Lhx4... 127 1.3e-11 2
MGI|MGI:101776 - symbol:Lhx4 "LIM homeobox protein 4" spe... 127 1.3e-11 2
UNIPROTKB|F1PCI5 - symbol:LHX4 "Uncharacterized protein" ... 127 1.3e-11 2
WARNING: Descriptions of 105 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|E1BM14 [details] [associations]
symbol:LHX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 CTD:9355 EMBL:DAAA02032103
IPI:IPI00694370 RefSeq:NP_001178104.1 UniGene:Bt.107855
PRIDE:E1BM14 Ensembl:ENSBTAT00000014582 GeneID:783763
KEGG:bta:783763 NextBio:20926288 Uniprot:E1BM14
Length = 406
Score = 230 (86.0 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
Score = 207 (77.9 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 177
Score = 61 (26.5 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +H+ C C C + L +D IYC+ Y
Sbjct: 58 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
Score = 59 (25.8 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 219 TVQKGRPRKRK----SPGPGAD 236
>UNIPROTKB|E2RPC3 [details] [associations]
symbol:LHX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 CTD:9355 OMA:CNENDAE
EMBL:AAEX03006892 RefSeq:XP_863668.2 Ensembl:ENSCAFT00000032214
GeneID:491340 KEGG:cfa:491340 Uniprot:E2RPC3
Length = 406
Score = 230 (86.0 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
Score = 207 (77.9 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 177
Score = 61 (26.5 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +H+ C C C + L +D IYC+ Y
Sbjct: 58 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
Score = 59 (25.8 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 219 TVQKGRPRKRK----SPGPGAD 236
>UNIPROTKB|P50458 [details] [associations]
symbol:LHX2 "LIM/homeobox protein Lhx2" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001843 "neural tube closure"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA] [GO:0007498
"mesoderm development" evidence=IEA] [GO:0009953 "dorsal/ventral
pattern formation" evidence=IEA] [GO:0021978 "telencephalon
regionalization" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:2000678 "negative regulation of transcription regulatory region
DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007411 GO:GO:0045893
GO:GO:0007498 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
KO:K09373 GO:GO:0021978 GO:GO:0000988 eggNOG:COG5576 GO:GO:2000678
EMBL:U11701 EMBL:BC093662 EMBL:BC112185 EMBL:AK094511 EMBL:AF124735
IPI:IPI00032144 RefSeq:NP_004780.3 UniGene:Hs.696425
ProteinModelPortal:P50458 SMR:P50458 STRING:P50458
PhosphoSite:P50458 DMDM:8247936 PaxDb:P50458 PRIDE:P50458
DNASU:9355 Ensembl:ENST00000373615 GeneID:9355 KEGG:hsa:9355
UCSC:uc004boe.1 CTD:9355 GeneCards:GC09P126763 HGNC:HGNC:6594
MIM:603759 neXtProt:NX_P50458 PharmGKB:PA30365 HOGENOM:HOG000034022
HOVERGEN:HBG006262 InParanoid:P50458 OrthoDB:EOG4G4GQK
PhylomeDB:P50458 ChiTaRS:LHX2 GenomeRNAi:9355 NextBio:35033
Bgee:P50458 CleanEx:HS_LHX2 Genevestigator:P50458
GermOnline:ENSG00000106689 Uniprot:P50458
Length = 406
Score = 230 (86.0 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
Score = 207 (77.9 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 177
Score = 61 (26.5 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +H+ C C C + L +D IYC+ Y
Sbjct: 58 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
Score = 59 (25.8 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 219 TVQKGRPRKRK----SPGPGAD 236
>UNIPROTKB|C4TJC6 [details] [associations]
symbol:Lhx2 "LIM homeobox protein 2" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0021978
"telencephalon regionalization" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0007498
"mesoderm development" evidence=IEA] [GO:0007411 "axon guidance"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0007498 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0021978 GO:GO:0000988
GO:GO:2000678 CTD:9355 OrthoDB:EOG4G4GQK OMA:CNENDAE EMBL:CU570921
EMBL:AB473486 RefSeq:NP_001163990.1 UniGene:Ssc.71156 STRING:C4TJC6
Ensembl:ENSSSCT00000006141 GeneID:100156063 KEGG:ssc:100156063
Uniprot:C4TJC6
Length = 406
Score = 230 (86.0 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
Score = 207 (77.9 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 177
Score = 61 (26.5 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +H+ C C C + L +D IYC+ Y
Sbjct: 58 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
Score = 59 (25.8 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 219 TVQKGRPRKRK----SPGPGAD 236
>MGI|MGI:96785 [details] [associations]
symbol:Lhx2 "LIM homeobox protein 2" species:10090 "Mus
musculus" [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001843
"neural tube closure" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007420 "brain development" evidence=IMP]
[GO:0007498 "mesoderm development" evidence=IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IMP] [GO:0021537 "telencephalon development"
evidence=IMP] [GO:0021978 "telencephalon regionalization"
evidence=IGI;IMP] [GO:0022008 "neurogenesis" evidence=IDA]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048646 "anatomical structure formation
involved in morphogenesis" evidence=IMP] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IGI] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:96785 GO:GO:0005634 GO:GO:0007411
GO:GO:0007498 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0021978 GO:GO:0000988 GO:GO:2000678 CTD:9355
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OrthoDB:EOG4G4GQK
EMBL:AF124734 EMBL:BC055741 IPI:IPI00129385 RefSeq:NP_034840.1
UniGene:Mm.142856 ProteinModelPortal:Q9Z0S2 SMR:Q9Z0S2
STRING:Q9Z0S2 PhosphoSite:Q9Z0S2 PRIDE:Q9Z0S2
Ensembl:ENSMUST00000000253 GeneID:16870 KEGG:mmu:16870
InParanoid:Q9Z0S2 OMA:CNENDAE NextBio:290834 Bgee:Q9Z0S2
CleanEx:MM_LHX2 Genevestigator:Q9Z0S2 GermOnline:ENSMUSG00000000247
Uniprot:Q9Z0S2
Length = 406
Score = 230 (86.0 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
Score = 207 (77.9 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 177
Score = 61 (26.5 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +H+ C C C + L +D IYC+ Y
Sbjct: 58 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
Score = 59 (25.8 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 219 TVQKGRPRKRK----SPGPGAD 236
>UNIPROTKB|D4A380 [details] [associations]
symbol:Lhx2 "LIM/homeobox protein Lhx2" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71076 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670 KO:K09373 CTD:9355
OrthoDB:EOG4G4GQK UniGene:Rn.81063 EMBL:CH473983 IPI:IPI00950401
RefSeq:NP_001100041.1 SMR:D4A380 Ensembl:ENSRNOT00000064507
GeneID:296706 KEGG:rno:296706 NextBio:641689 Uniprot:D4A380
Length = 406
Score = 230 (86.0 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
Score = 207 (77.9 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 177
Score = 61 (26.5 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +H+ C C C + L +D IYC+ Y
Sbjct: 58 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
Score = 59 (25.8 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 219 TVQKGRPRKRK----SPGPGAD 236
>UNIPROTKB|H7C0H1 [details] [associations]
symbol:LHX2 "LIM/homeobox protein Lhx2" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
EMBL:AC006450 HGNC:HGNC:6594 ChiTaRS:LHX2 OMA:CNENDAE EMBL:AL158052
ProteinModelPortal:H7C0H1 Ensembl:ENST00000446480 Uniprot:H7C0H1
Length = 412
Score = 230 (86.0 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 268 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 317
Score = 207 (77.9 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 126 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 183
Score = 61 (26.5 bits), Expect = 6.3e-28, Sum P(3) = 6.3e-28
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +H+ C C C + L +D IYC+ Y
Sbjct: 56 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 104
Score = 59 (25.8 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 225 TVQKGRPRKRK----SPGPGAD 242
>UNIPROTKB|G3N0G6 [details] [associations]
symbol:LHX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0021978
"telencephalon regionalization" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0007498
"mesoderm development" evidence=IEA] [GO:0007411 "axon guidance"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0007498 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
GeneTree:ENSGT00680000099670 GO:GO:0021978 GO:GO:0000988
GO:GO:2000678 OMA:CNENDAE EMBL:DAAA02032103
Ensembl:ENSBTAT00000065104 Uniprot:G3N0G6
Length = 427
Score = 230 (86.0 bits), Expect = 6.6e-43, Sum P(3) = 6.6e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311
Score = 207 (77.9 bits), Expect = 6.6e-43, Sum P(3) = 6.6e-43
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 120 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 177
Score = 61 (26.5 bits), Expect = 9.6e-28, Sum P(3) = 9.6e-28
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +H+ C C C + L +D IYC+ Y
Sbjct: 58 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 106
Score = 59 (25.8 bits), Expect = 6.6e-43, Sum P(3) = 6.6e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 219 TVQKGRPRKRK----SPGPGAD 236
>RGD|71076 [details] [associations]
symbol:Lhx2 "LIM homeobox 2" species:10116 "Rattus norvegicus"
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=ISO] [GO:0001843
"neural tube closure" evidence=IEA;ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0007411 "axon guidance"
evidence=IEA;ISO] [GO:0007420 "brain development" evidence=ISO]
[GO:0007498 "mesoderm development" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA;ISO] [GO:0021537 "telencephalon development"
evidence=ISO] [GO:0021978 "telencephalon regionalization"
evidence=IEA;ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030182 "neuron differentiation" evidence=IEP;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0048646
"anatomical structure formation involved in morphogenesis"
evidence=ISO] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IEA;ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:71076 GO:GO:0005634 GO:GO:0007411 GO:GO:0045893 GO:GO:0030182
GO:GO:0007498 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
eggNOG:NOG240987 GO:GO:0021978 GO:GO:0000988 GO:GO:2000678
HOGENOM:HOG000034022 HOVERGEN:HBG006262 EMBL:L06804 IPI:IPI00199572
PIR:A47179 UniGene:Rn.81063 ProteinModelPortal:P36198 SMR:P36198
STRING:P36198 UCSC:RGD:71076 InParanoid:P36198 ArrayExpress:P36198
Genevestigator:P36198 GermOnline:ENSRNOG00000010551 Uniprot:P36198
Length = 426
Score = 230 (86.0 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 260 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 309
Score = 206 (77.6 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
Identities = 35/58 (60%), Positives = 46/58 (79%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISESEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 176
Score = 63 (27.2 bits), Expect = 5.8e-28, Sum P(3) = 5.8e-28
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILR-HR 56
G S + A D +H+ C C C + L +D IYC+ Y + R R
Sbjct: 57 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCAR 116
Query: 57 DYCGSAEIEQPMSPR 71
+ G +E E M R
Sbjct: 117 CHLGISESEMVMRAR 131
Score = 59 (25.8 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 217 TVQKGRPRKRK----SPGPGAD 234
>UNIPROTKB|P36198 [details] [associations]
symbol:Lhx2 "LIM/homeobox protein Lhx2" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71076 GO:GO:0005634 GO:GO:0007411 GO:GO:0045893
GO:GO:0030182 GO:GO:0007498 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843
GO:GO:0009953 eggNOG:NOG240987 GO:GO:0021978 GO:GO:0000988
GO:GO:2000678 HOGENOM:HOG000034022 HOVERGEN:HBG006262 EMBL:L06804
IPI:IPI00199572 PIR:A47179 UniGene:Rn.81063
ProteinModelPortal:P36198 SMR:P36198 STRING:P36198 UCSC:RGD:71076
InParanoid:P36198 ArrayExpress:P36198 Genevestigator:P36198
GermOnline:ENSRNOG00000010551 Uniprot:P36198
Length = 426
Score = 230 (86.0 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 260 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 309
Score = 206 (77.6 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
Identities = 35/58 (60%), Positives = 46/58 (79%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISESEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 176
Score = 63 (27.2 bits), Expect = 5.8e-28, Sum P(3) = 5.8e-28
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILR-HR 56
G S + A D +H+ C C C + L +D IYC+ Y + R R
Sbjct: 57 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCAR 116
Query: 57 DYCGSAEIEQPMSPR 71
+ G +E E M R
Sbjct: 117 CHLGISESEMVMRAR 131
Score = 59 (25.8 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 79 TVQKGRPRKRKLSVDSPTPPSE 100
TVQKGRPRKRK SP P ++
Sbjct: 217 TVQKGRPRKRK----SPGPGAD 234
>UNIPROTKB|E2R2S6 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:AAEX03005042 SMR:E2R2S6 Ensembl:ENSCAFT00000018020
Uniprot:E2R2S6
Length = 330
Score = 230 (86.0 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 238
Score = 227 (85.0 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
Score = 65 (27.9 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 76 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|H0YL54 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:AL590115 HGNC:HGNC:14222
ProteinModelPortal:H0YL54 SMR:H0YL54 Ensembl:ENST00000561173
Bgee:H0YL54 Uniprot:H0YL54
Length = 336
Score = 230 (86.0 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 144 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 203
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 204 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 244
Score = 227 (85.0 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 271 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 318
Score = 65 (27.9 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 82 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 130
>UNIPROTKB|E1BSF2 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:AADN02033814 EMBL:AADN02033815 IPI:IPI00685016
Ensembl:ENSGALT00000034098 ArrayExpress:E1BSF2 Uniprot:E1BSF2
Length = 330
Score = 227 (85.0 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
Score = 226 (84.6 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 50/101 (49%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 238
Score = 65 (27.9 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 76 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|Q58CW3 [details] [associations]
symbol:LHX9 "LIM homeobox 9" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OrthoDB:EOG4G4GQK
IPI:IPI00692674 UniGene:Bt.31799 CTD:56956 EMBL:DAAA02043909
EMBL:DAAA02043910 EMBL:BT021834 IPI:IPI00903761
RefSeq:NP_001019715.1 SMR:Q58CW3 Ensembl:ENSBTAT00000017945
GeneID:515012 KEGG:bta:515012 InParanoid:Q58CW3 NextBio:20871620
Uniprot:Q58CW3
Length = 378
Score = 230 (86.0 bits), Expect = 6.0e-41, Sum P(2) = 6.0e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 219
Score = 227 (85.0 bits), Expect = 6.0e-41, Sum P(2) = 6.0e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 246 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 293
Score = 62 (26.9 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 12 ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
A D +HL C C C + L +D IYC+ Y
Sbjct: 67 AVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 105
>RGD|727956 [details] [associations]
symbol:Lhx9 "LIM homeobox 9" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0008585 "female gonad development"
evidence=IEA;ISO] [GO:0035262 "gonad morphogenesis"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 EMBL:AY273890
RGD:727956 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0008585
GO:GO:0046872 GO:GO:0008283 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0008584
Gene3D:2.10.110.10 GO:GO:0008045 eggNOG:NOG240987
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG HSSP:P61969
CTD:56956 EMBL:BC128722 EMBL:AF527619 IPI:IPI00208402
IPI:IPI00327074 RefSeq:NP_852032.1 UniGene:Rn.150335
ProteinModelPortal:Q80W90 SMR:Q80W90 STRING:Q80W90
Ensembl:ENSRNOT00000013873 GeneID:289048 KEGG:rno:289048
UCSC:RGD:727956 InParanoid:Q811Z4 NextBio:629139
ArrayExpress:Q80W90 Genevestigator:Q80W90 Uniprot:Q80W90
Length = 388
Score = 230 (86.0 bits), Expect = 7.9e-41, Sum P(2) = 7.9e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 229
Score = 227 (85.0 bits), Expect = 7.9e-41, Sum P(2) = 7.9e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 303
Score = 65 (27.9 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 67 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 115
Score = 35 (17.4 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 95 PTPPSEDINANVMRIPSTTL 114
P PPS D A +TTL
Sbjct: 334 PAPPSADSGALTPPGTATTL 353
>UNIPROTKB|Q80W90 [details] [associations]
symbol:Lhx9 "LIM/homeobox protein Lhx9" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 EMBL:AY273890 RGD:727956 GO:GO:0005634 GO:GO:0003714
GO:GO:0045892 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0035262 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG
HSSP:P61969 CTD:56956 EMBL:BC128722 EMBL:AF527619 IPI:IPI00208402
IPI:IPI00327074 RefSeq:NP_852032.1 UniGene:Rn.150335
ProteinModelPortal:Q80W90 SMR:Q80W90 STRING:Q80W90
Ensembl:ENSRNOT00000013873 GeneID:289048 KEGG:rno:289048
UCSC:RGD:727956 InParanoid:Q811Z4 NextBio:629139
ArrayExpress:Q80W90 Genevestigator:Q80W90 Uniprot:Q80W90
Length = 388
Score = 230 (86.0 bits), Expect = 7.9e-41, Sum P(2) = 7.9e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 129 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 188
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 189 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 229
Score = 227 (85.0 bits), Expect = 7.9e-41, Sum P(2) = 7.9e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 303
Score = 65 (27.9 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 67 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 115
Score = 35 (17.4 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 95 PTPPSEDINANVMRIPSTTL 114
P PPS D A +TTL
Sbjct: 334 PAPPSADSGALTPPGTATTL 353
>ZFIN|ZDB-GENE-050417-210 [details] [associations]
symbol:lhx9 "LIM homeobox 9" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-050417-210 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG CTD:56956
EMBL:AB188254 EMBL:BX004971 EMBL:BX511183 EMBL:BC163023
EMBL:BC163060 EMBL:BC163073 IPI:IPI00635283 RefSeq:NP_001032320.1
UniGene:Dr.42632 ProteinModelPortal:Q1LWV4 SMR:Q1LWV4 STRING:Q1LWV4
Ensembl:ENSDART00000054807 GeneID:550405 KEGG:dre:550405
InParanoid:Q1LWV4 NextBio:20879654 Bgee:Q1LWV4 Uniprot:Q1LWV4
Length = 396
Score = 230 (86.0 bits), Expect = 9.7e-41, Sum P(2) = 9.7e-41
Identities = 49/94 (52%), Positives = 61/94 (64%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFETLIQGEYHP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK 89
AE+ P+ T TVQKGRPRKRK
Sbjct: 198 QLNYAELAAKGGGLALPYFNGTGTVQKGRPRKRK 231
Score = 227 (85.0 bits), Expect = 9.7e-41, Sum P(2) = 9.7e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
Score = 65 (27.9 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 76 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|E2R2S5 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0035262
"gonad morphogenesis" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0008585 GO:GO:0046872
GO:GO:0008283 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262 OMA:AAMLFHG
CTD:56956 EMBL:AAEX03005042 RefSeq:XP_848787.1 SMR:E2R2S5
Ensembl:ENSCAFT00000018021 GeneID:490257 KEGG:cfa:490257
NextBio:20863313 Uniprot:E2R2S5
Length = 397
Score = 230 (86.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 238
Score = 227 (85.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
Score = 65 (27.9 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 76 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
Score = 35 (17.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 95 PTPPSEDINANVMRIPSTTL 114
P PPS D A +TTL
Sbjct: 343 PAPPSADSGALTPPGTATTL 362
>UNIPROTKB|Q9NQ69 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0008585
"female gonad development" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0003714
"transcription corepressor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0008585 GO:GO:0046872 GO:GO:0008283 GO:GO:0043565
GO:GO:0008270 EMBL:CH471067 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 KO:K09373 GO:GO:0035262 HOVERGEN:HBG006262
OrthoDB:EOG4G4GQK OMA:AAMLFHG CTD:56956 EMBL:AJ277915 EMBL:AJ277916
EMBL:AJ277917 EMBL:AJ277918 EMBL:AJ277919 EMBL:AJ277920
EMBL:AJ296272 EMBL:AY273889 EMBL:AL590115 EMBL:BC131622
IPI:IPI00328729 IPI:IPI00396103 IPI:IPI00642345 IPI:IPI00642361
RefSeq:NP_001014434.1 RefSeq:NP_064589.2 UniGene:Hs.442578
UniGene:Hs.706475 PDB:2DMQ PDBsum:2DMQ ProteinModelPortal:Q9NQ69
SMR:Q9NQ69 STRING:Q9NQ69 PhosphoSite:Q9NQ69 DMDM:224471883
PRIDE:Q9NQ69 Ensembl:ENST00000337020 Ensembl:ENST00000367387
Ensembl:ENST00000367390 Ensembl:ENST00000367391 GeneID:56956
KEGG:hsa:56956 UCSC:uc001gui.1 UCSC:uc001guk.1
GeneCards:GC01P197881 HGNC:HGNC:14222 HPA:HPA009695 MIM:606066
neXtProt:NX_Q9NQ69 PharmGKB:PA30368 PhylomeDB:Q9NQ69
EvolutionaryTrace:Q9NQ69 GenomeRNAi:56956 NextBio:62575
ArrayExpress:Q9NQ69 Bgee:Q9NQ69 CleanEx:HS_LHX9
Genevestigator:Q9NQ69 GermOnline:ENSG00000143355 Uniprot:Q9NQ69
Length = 397
Score = 230 (86.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 238
Score = 227 (85.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
Score = 65 (27.9 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 76 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
Score = 35 (17.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 95 PTPPSEDINANVMRIPSTTL 114
P PPS D A +TTL
Sbjct: 343 PAPPSADSGALTPPGTATTL 362
>MGI|MGI:1316721 [details] [associations]
symbol:Lhx9 "LIM homeobox protein 9" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0008585 "female gonad development" evidence=IMP] [GO:0035262
"gonad morphogenesis" evidence=IMP] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1316721 GO:GO:0005634 GO:GO:0003714
GO:GO:0045892 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0035262 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG
CTD:56956 EMBL:AJ243851 EMBL:AJ243852 EMBL:AJ243853 EMBL:AJ243854
EMBL:AJ243855 EMBL:AJ243856 EMBL:AJ243857 EMBL:AC154398
EMBL:BC072623 EMBL:AF134761 EMBL:AF113518 IPI:IPI00124662
IPI:IPI00227842 IPI:IPI00626920 IPI:IPI00830796
RefSeq:NP_001020736.1 RefSeq:NP_001036042.1 RefSeq:NP_034844.1
UniGene:Mm.250732 ProteinModelPortal:Q9WUH2 SMR:Q9WUH2
IntAct:Q9WUH2 MINT:MINT-1340747 STRING:Q9WUH2 PRIDE:Q9WUH2
Ensembl:ENSMUST00000019374 Ensembl:ENSMUST00000046870
Ensembl:ENSMUST00000093486 Ensembl:ENSMUST00000112026
Ensembl:ENSMUST00000112030 GeneID:16876 KEGG:mmu:16876
UCSC:uc007cvr.1 UCSC:uc007cvs.1 UCSC:uc007cvu.1 ChiTaRS:LHX9
NextBio:290864 Bgee:Q9WUH2 CleanEx:MM_LHX9 Genevestigator:Q9WUH2
GermOnline:ENSMUSG00000019230 Uniprot:Q9WUH2
Length = 397
Score = 230 (86.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 238
Score = 227 (85.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
Score = 65 (27.9 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 76 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
Score = 35 (17.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 95 PTPPSEDINANVMRIPSTTL 114
P PPS D A +TTL
Sbjct: 343 PAPPSADSGALTPPGTATTL 362
>UNIPROTKB|A0JNI8 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9913 "Bos
taurus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0035262
"gonad morphogenesis" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0008585 GO:GO:0046872 GO:GO:0008283 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045 eggNOG:NOG240987
GeneTree:ENSGT00680000099670 GO:GO:0035262 HOGENOM:HOG000034022
HOVERGEN:HBG006262 EMBL:BT026326 EMBL:BC126704 IPI:IPI00692674
IPI:IPI00839239 UniGene:Bt.31799 ProteinModelPortal:A0JNI8
SMR:A0JNI8 Ensembl:ENSBTAT00000043591 Ensembl:ENSBTAT00000054943
InParanoid:Q0V893 OMA:AAMLFHG Uniprot:A0JNI8
Length = 397
Score = 230 (86.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 238
Score = 227 (85.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
Score = 62 (26.9 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 12 ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
A D +HL C C C + L +D IYC+ Y
Sbjct: 86 AVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|F1S5F5 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 GO:GO:0035262 OMA:AAMLFHG
EMBL:FP325281 Ensembl:ENSSSCT00000011930 Uniprot:F1S5F5
Length = 397
Score = 230 (86.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 238
Score = 227 (85.0 bits), Expect = 9.9e-41, Sum P(2) = 9.9e-41
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
Score = 62 (26.9 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 12 ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
A D +HL C C C + L +D IYC+ Y
Sbjct: 86 AVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
>UNIPROTKB|F1NV70 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008585 "female gonad development" evidence=IEA]
[GO:0035262 "gonad morphogenesis" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:AAMLFHG IPI:IPI00682838
EMBL:AADN02033814 EMBL:AADN02033815 Ensembl:ENSGALT00000003480
ArrayExpress:F1NV70 Uniprot:F1NV70
Length = 378
Score = 227 (85.0 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 246 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 293
Score = 226 (84.6 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 50/101 (49%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPP 178
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 179 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 219
Score = 65 (27.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 57 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 105
Score = 35 (17.4 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 95 PTPPSEDINANVMRIPSTTL 114
P PPS D A +TTL
Sbjct: 324 PAPPSADSGALTPPGTATTL 343
>ZFIN|ZDB-GENE-051220-1 [details] [associations]
symbol:lhx2b "LIM homeobox 2b" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0007420 "brain development"
evidence=IMP] [GO:0007411 "axon guidance" evidence=IMP] [GO:0043010
"camera-type eye development" evidence=IMP] [GO:0030900 "forebrain
development" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0021537 "telencephalon development"
evidence=IMP] [GO:0007634 "optokinetic behavior" evidence=IMP]
[GO:0021554 "optic nerve development" evidence=IMP] [GO:0009416
"response to light stimulus" evidence=IMP] [GO:0071632 "optomotor
response" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-051220-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0010468
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0021537 GO:GO:0031290
GO:GO:0007634 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:CNENDAE
EMBL:AL929566 EMBL:BX005074 IPI:IPI00505332 RefSeq:NP_001035099.3
UniGene:Dr.16318 SMR:B0R107 Ensembl:ENSDART00000148020
GeneID:791744 KEGG:dre:791744 CTD:791744 NextBio:20930769
Uniprot:B0R107
Length = 427
Score = 230 (86.0 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 282 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 331
Score = 226 (84.6 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 52/110 (47%), Positives = 68/110 (61%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL------R 54
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L
Sbjct: 151 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFETLIQGDFPT 210
Query: 55 HRDYCGSAEIEQPMSPRPAPWQ----PTTVQKGRPRKRKLSVDSPTPPSE 100
H ++ A + S P TVQKGRPRKRK SP P ++
Sbjct: 211 HFNHTDVAPNKGLSSTGPLGLSYYNGVNTVQKGRPRKRK----SPGPGAD 256
Score = 61 (26.5 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +H+ C C C + L +D IYC+ Y
Sbjct: 89 GKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDY 137
>UNIPROTKB|E1BXQ7 [details] [associations]
symbol:E1BXQ7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 EMBL:AADN02026343 EMBL:AADN02026344
EMBL:AADN02026345 IPI:IPI00684197 Ensembl:ENSGALT00000001693
Uniprot:E1BXQ7
Length = 395
Score = 232 (86.7 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 45/50 (90%), Positives = 48/50 (96%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S+Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 251 SNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 300
Score = 221 (82.9 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 51/114 (44%), Positives = 69/114 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 116 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQV 175
Query: 59 -CGSAEIEQPMSPRPA---------PWQPT--TVQKGRPRKRKLSVDSPTPPSE 100
+++ P P+ TVQKGRPRKRK SP P ++
Sbjct: 176 HFNHSDVAAGKGPALGAGSANTLGLPYYNGVGTVQKGRPRKRK----SPGPGAD 225
>UNIPROTKB|A2I8Z7 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:223369
"Astyanax fasciatus" [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HOVERGEN:HBG006262 EMBL:EF175738
ProteinModelPortal:A2I8Z7 Uniprot:A2I8Z7
Length = 377
Score = 229 (85.7 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 48/94 (51%), Positives = 60/94 (63%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARD V+HL CFTC SC LT GD FGMR+ ++YCR H+E L +Y
Sbjct: 119 LGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMRENLVYCRAHFESLVQGEYHA 178
Query: 59 -CGSAEIEQPMSPRPAPW--QPTTVQKGRPRKRK 89
AE+ P+ + VQKGRPRKRK
Sbjct: 179 PLNYAELAAKGGGLALPYFNGASAVQKGRPRKRK 212
Score = 221 (82.9 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 43/48 (89%), Positives = 45/48 (93%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TK MRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 246 QKTKXMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 293
Score = 64 (27.6 bits), Expect = 8.5e-23, Sum P(2) = 8.5e-23
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
S + A D +HL C C C + L +D IYC+ Y
Sbjct: 60 SDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 105
>UNIPROTKB|F1P3H6 [details] [associations]
symbol:F1P3H6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IEA] [GO:0007498 "mesoderm
development" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021978 "telencephalon
regionalization" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:2000678 "negative regulation of transcription regulatory region
DNA binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0008283 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:CNENDAE EMBL:AADN02026343
EMBL:AADN02026344 EMBL:AADN02026345 IPI:IPI00597964
Ensembl:ENSGALT00000034919 Uniprot:F1P3H6
Length = 413
Score = 232 (86.7 bits), Expect = 3.4e-40, Sum P(2) = 3.4e-40
Identities = 45/50 (90%), Positives = 48/50 (96%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S+Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 269 SNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 318
Score = 221 (82.9 bits), Expect = 3.4e-40, Sum P(2) = 3.4e-40
Identities = 51/114 (44%), Positives = 69/114 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 134 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQV 193
Query: 59 -CGSAEIEQPMSPRPA---------PWQPT--TVQKGRPRKRKLSVDSPTPPSE 100
+++ P P+ TVQKGRPRKRK SP P ++
Sbjct: 194 HFNHSDVAAGKGPALGAGSANTLGLPYYNGVGTVQKGRPRKRK----SPGPGAD 243
>UNIPROTKB|Q68EY3 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:8355
"Xenopus laevis" [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
KO:K09373 HOVERGEN:HBG006262 HSSP:P61969 EMBL:BC080067
RefSeq:NP_001087527.1 UniGene:Xl.28959 ProteinModelPortal:Q68EY3
SMR:Q68EY3 GeneID:447351 KEGG:xla:447351 CTD:447351
Xenbase:XB-GENE-866119 Uniprot:Q68EY3
Length = 331
Score = 227 (85.0 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 266 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 313
Score = 212 (79.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 48/103 (46%), Positives = 64/103 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++YCR H+E+L D+
Sbjct: 139 LGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENLVYCRIHFELLVQGDFHQ 198
Query: 59 -CGSAEIEQPMSPRPA-PWQPT---TVQKGRPRKRK---LSVD 93
E+ A P+ TVQKGRPRKRK L VD
Sbjct: 199 QLNYTELSAKGGGIAALPYFSNGTGTVQKGRPRKRKSPALGVD 241
Score = 65 (27.9 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 78 GKISDRYYLLAVDKQWHLRCLKCCECKLTLESELTCFAKDGSIYCKEDY 126
Score = 40 (19.1 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 87 KRKLSVDSPTPPSEDINANVMRIPSTTLE 115
+R S DS S +N+ R+PS E
Sbjct: 40 RRSKSADSRLAKSIQVNSRETRMPSLNPE 68
>UNIPROTKB|Q90881 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IEP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0008045 "motor neuron axon guidance"
evidence=IDA] [GO:0003714 "transcription corepressor activity"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0021522 eggNOG:NOG240987 KO:K09373 HOGENOM:HOG000034022
HOVERGEN:HBG006262 EMBL:L35566 IPI:IPI00682838 PIR:JC5658
RefSeq:NP_990757.1 UniGene:Gga.2348 HSSP:P61969 STRING:Q90881
GeneID:396397 KEGG:gga:396397 CTD:56956 InParanoid:Q90881
NextBio:20816439 Uniprot:Q90881
Length = 397
Score = 226 (84.6 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 50/101 (49%), Positives = 63/101 (62%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY-- 58
+GIS+SE+VMRAR+ V+HL CFTC +C LT GD FGM+D ++YCR H+E L +Y
Sbjct: 138 LGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPP 197
Query: 59 -CGSAEIEQPMSPRPAPW-QPT-TVQKGRPRKRK---LSVD 93
E+ P+ T TVQKGRPRKRK L VD
Sbjct: 198 QLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 238
Score = 221 (82.9 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 43/48 (89%), Positives = 45/48 (93%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRM TSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMATSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
Score = 65 (27.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 76 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 124
Score = 35 (17.4 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 95 PTPPSEDINANVMRIPSTTL 114
P PPS D A +TTL
Sbjct: 343 PAPPSADSGALTPPGTATTL 362
>UNIPROTKB|A2PZF9 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:8410
"Glandirana rugosa" [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HOVERGEN:HBG006262 EMBL:AB269882
EMBL:AB269883 EMBL:AB269884 EMBL:AB269885 EMBL:AB269886
ProteinModelPortal:A2PZF9 SMR:A2PZF9 Uniprot:A2PZF9
Length = 379
Score = 221 (82.9 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 43/48 (89%), Positives = 45/48 (93%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
Q+TKRMRTSFKHHQLRT KSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 247 QKTKRMRTSFKHHQLRTTKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 294
Score = 201 (75.8 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 47/103 (45%), Positives = 63/103 (61%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+GIS+SE+VMRAR+ V+HL CFTC +C L+ GD FGM++ ++Y R H+E+L D+
Sbjct: 120 LGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHFELLVQGDFHS 179
Query: 61 S---AEIEQP---MSPRPAPWQPT-TVQKGRPRKRK---LSVD 93
E+ +S P T VQKGRPRKRK L VD
Sbjct: 180 QLNYTELSAKGGGLSALPYFTNGTGAVQKGRPRKRKSPALGVD 222
Score = 65 (27.9 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
G S + A D +HL C C C + L +D IYC+ Y
Sbjct: 58 GKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 106
>FB|FBgn0000099 [details] [associations]
symbol:ap "apterous" species:7227 "Drosophila melanogaster"
[GO:0007559 "histolysis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=IDA] [GO:0007472 "wing disc
morphogenesis" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;NAS] [GO:0007481 "haltere disc morphogenesis"
evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0007399 "nervous system development" evidence=IMP;TAS]
[GO:0007517 "muscle organ development" evidence=IMP;TAS]
[GO:0007479 "leg disc proximal/distal pattern formation"
evidence=IMP] [GO:0045165 "cell fate commitment" evidence=NAS]
[GO:0048190 "wing disc dorsal/ventral pattern formation"
evidence=IGI;IMP;TAS] [GO:0007451 "dorsal/ventral lineage
restriction, imaginal disc" evidence=TAS] [GO:0007476 "imaginal
disc-derived wing morphogenesis" evidence=TAS] [GO:0007450
"dorsal/ventral pattern formation, imaginal disc" evidence=TAS]
[GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP]
[GO:0035218 "leg disc development" evidence=IMP] [GO:0007526
"larval somatic muscle development" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
EMBL:AE013599 GO:GO:0005634 GO:GO:0007411 GO:GO:0048190
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0007517 GO:GO:0007526 GO:GO:0007476 EMBL:X65158 EMBL:M92841
EMBL:AY069815 EMBL:BT005201 PIR:JH0718 RefSeq:NP_001163058.1
RefSeq:NP_001163059.1 RefSeq:NP_523621.2 RefSeq:NP_724428.1
UniGene:Dm.4746 ProteinModelPortal:P29673 SMR:P29673 DIP:DIP-23617N
IntAct:P29673 MINT:MINT-338208 STRING:P29673 PaxDb:P29673
PRIDE:P29673 EnsemblMetazoa:FBtr0086058 GeneID:35509
KEGG:dme:Dmel_CG8376 UCSC:CG8376-RA CTD:11763 FlyBase:FBgn0000099
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 InParanoid:P29673
KO:K09373 OMA:THYSIAR OrthoDB:EOG46Q57V PhylomeDB:P29673 ChiTaRS:ap
GenomeRNAi:35509 NextBio:793761 Bgee:P29673 GermOnline:CG8376
GO:GO:0000977 GO:GO:0045165 GO:GO:0007451 GO:GO:0007559
GO:GO:0036011 GO:GO:0007479 Uniprot:P29673
Length = 469
Score = 231 (86.4 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 46/55 (83%), Positives = 48/55 (87%)
Query: 141 GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
GS + S RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 358 GSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 412
Score = 187 (70.9 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 43/103 (41%), Positives = 57/103 (55%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
ISS+ELVMRAR+LVFH++CF C C LTKGD +G+ D +IYCR HY I R D S+
Sbjct: 217 ISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSS 276
Query: 63 -EIEQPMSPR-PAPWQPTTVQKGRPRKRKLSVDSPTPPSEDIN 103
P S + +P ++ P + + P S IN
Sbjct: 277 MSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVIN 319
Score = 53 (23.7 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+H C C +C L + RD IYC+ Y
Sbjct: 168 WHASCLQCYACRQPLERESSCYSRDGNIYCKNDY 201
Score = 50 (22.7 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 76 QPTTVQKGRPRKRK 89
QP QKGRPRKRK
Sbjct: 323 QPAR-QKGRPRKRK 335
>ZFIN|ZDB-GENE-091118-109 [details] [associations]
symbol:lhx2a "LIM homeobox 2a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-091118-109 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:BX470252 IPI:IPI00994306 Ensembl:ENSDART00000134360
ArrayExpress:E9QBI8 Bgee:E9QBI8 Uniprot:E9QBI8
Length = 328
Score = 204 (76.9 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 39/50 (78%), Positives = 46/50 (92%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S Q++KRMRTSFKHHQLR+M+S+F N NPDAKDLK+LAQKTGL+KRVLQ
Sbjct: 196 SCQKSKRMRTSFKHHQLRSMQSFFTHNHNPDAKDLKELAQKTGLTKRVLQ 245
Score = 181 (68.8 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 36/90 (40%), Positives = 54/90 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD-YC 59
+GIS++E+VMRARDLV+HL CF+C +C +L GD +GM++ +YCR H + H D Y
Sbjct: 81 LGISATEIVMRARDLVYHLSCFSCATCHKVLLTGDHYGMKETSVYCRAHIQRECHADLYY 140
Query: 60 GSAEIEQPMSPRPAPWQPTTVQKGRPRKRK 89
+ S + + V + R R+RK
Sbjct: 141 SDMSSRETNSESHTYDEESPVHRARVRRRK 170
Score = 43 (20.2 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGI-LLTKGDLFGMRDEMIYCRPHY 50
S + A + +H C C +C L ++ F + IYC+ Y
Sbjct: 21 SDRFYLLAAERRWHERCLKCSACQTDLESELTCFSKHGD-IYCKEDY 66
>WB|WBGene00006654 [details] [associations]
symbol:ttx-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008355 "olfactory learning" evidence=IMP] [GO:0043052
"thermotaxis" evidence=IGI;IMP] [GO:0045664 "regulation of neuron
differentiation" evidence=IMP] [GO:0007409 "axonogenesis"
evidence=IMP] [GO:0040024 "dauer larval development" evidence=IGI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0040040 "thermosensory behavior"
evidence=IGI;IMP] [GO:0008306 "associative learning" evidence=IMP]
[GO:0022401 "negative adaptation of signaling pathway"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0045893 GO:GO:0045664
GO:GO:0008355 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0007409 GO:GO:0040024 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0040040 GO:GO:0043052 HSSP:P06601 GO:GO:0022401 EMBL:Z81482
UniGene:Cel.19674 GeneID:181357 KEGG:cel:CELE_C40H5.5 CTD:181357
EMBL:U72211 PIR:T19871 RefSeq:NP_001257168.1
ProteinModelPortal:G5EE86 SMR:G5EE86 EnsemblMetazoa:C40H5.5a
WormBase:C40H5.5a OMA:CRADHAK NextBio:913598 Uniprot:G5EE86
Length = 409
Score = 211 (79.3 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 43/61 (70%), Positives = 48/61 (78%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
A G+G S QR+KRMRTSFKHHQLR MK+YF +N NPDAKDLKQLA KT L+KRVL
Sbjct: 278 ASTDEDGNGSGS-QRSKRMRTSFKHHQLRAMKTYFALNHNPDAKDLKQLAAKTNLTKRVL 336
Query: 195 Q 195
Q
Sbjct: 337 Q 337
Score = 151 (58.2 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 34/110 (30%), Positives = 52/110 (47%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEILRHRDYCGS 61
++ ++VM+A++++FH CF C CGI L GD + M + +YC HY +R C
Sbjct: 178 LNREDMVMKAKEMIFHHACFVCFICGIKLNPGDYYTMSPQGHLYCHAHYNAVRSTVLCEE 237
Query: 62 AEIEQ-PMSPRPAPWQPTTVQKGRPRK-----RKLSVDSPTPPSEDINAN 105
A + P P P PTT P R+ S ++ ED N +
Sbjct: 238 AAVATVPAVVAPPPPPPTTTTAPPPAAPEQPPREASTEAEASTDEDGNGS 287
Score = 60 (26.2 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEI 64
+H +C C C I D +RD + CR + R++ C EI
Sbjct: 130 YHNNCLRCQMCDIPFEYSDKCYVRDGVFLCRADHA-KRYQKCCRKCEI 176
Score = 36 (17.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 24 CISCGILLTKGDLFGMRDEMIY 45
C C I L + D+ EMI+
Sbjct: 171 CRKCEIPLNREDMVMKAKEMIF 192
>FB|FBgn0013751 [details] [associations]
symbol:Awh "Arrowhead" species:7227 "Drosophila melanogaster"
[GO:0007444 "imaginal disc development" evidence=IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
EMBL:AE014296 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007444 EMBL:U82539 EMBL:AY071197
EMBL:BT025230 RefSeq:NP_523907.2 RefSeq:NP_728906.1 UniGene:Dm.6063
ProteinModelPortal:Q8IRC7 SMR:Q8IRC7 PRIDE:Q8IRC7
EnsemblMetazoa:FBtr0073156 GeneID:38451 KEGG:dme:Dmel_CG1072
UCSC:CG1072-RA CTD:38451 FlyBase:FBgn0013751 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 HOGENOM:HOG000214908 InParanoid:Q8IRC7
OMA:IHDRYLL OrthoDB:EOG42BVRJ PhylomeDB:Q8IRC7 GenomeRNAi:38451
NextBio:808729 Bgee:Q8IRC7 GermOnline:CG1072 Uniprot:Q8IRC7
Length = 275
Score = 144 (55.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
GIS+S+ V RAR+LVFHL CF C CG L+ G+ F + D+ + C+ HY
Sbjct: 75 GISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY 123
Score = 140 (54.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 141 GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G G H +TKR+RT+F QL+ +++ F I+ NPD +DL+++A TGLSKRV Q
Sbjct: 140 GDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQ 193
Score = 63 (27.2 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 17 FHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+H HC C C L + +R+ +YC+ Y
Sbjct: 28 WHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADY 61
>RGD|621849 [details] [associations]
symbol:Isl2 "ISL LIM homeobox 2" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005622 "intracellular" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA;ISO] [GO:0021524 "visceral motor neuron
differentiation" evidence=IEA;ISO] [GO:0031290 "retinal ganglion
cell axon guidance" evidence=IEA;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IEA;ISO] [GO:0048663
"neuron fate commitment" evidence=ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:621849 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0031290 eggNOG:COG5576 GO:GO:0021520
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR
GO:GO:0021524 CTD:64843 EMBL:L35571 IPI:IPI00198543 PIR:A55198
RefSeq:NP_065204.1 UniGene:Rn.10026 PDB:1BW5 PDBsum:1BW5
ProteinModelPortal:P50480 SMR:P50480 STRING:P50480 PRIDE:P50480
GeneID:57233 KEGG:rno:57233 UCSC:RGD:621849 InParanoid:P50480
EvolutionaryTrace:P50480 NextBio:611298 ArrayExpress:P50480
Genevestigator:P50480 GermOnline:ENSRNOG00000015336 Uniprot:P50480
Length = 360
Score = 159 (61.0 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 34/77 (44%), Positives = 43/77 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQP 77
S P SP P P P
Sbjct: 154 S-----PRSPGPLPGTP 165
Score = 97 (39.2 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 185 VHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 237
Score = 60 (26.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 37 QFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>UNIPROTKB|P50480 [details] [associations]
symbol:Isl2 "Insulin gene enhancer protein ISL-2"
species:10116 "Rattus norvegicus" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:621849 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0031290 eggNOG:COG5576
GO:GO:0021520 HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304
OrthoDB:EOG4G4GQR GO:GO:0021524 CTD:64843 EMBL:L35571
IPI:IPI00198543 PIR:A55198 RefSeq:NP_065204.1 UniGene:Rn.10026
PDB:1BW5 PDBsum:1BW5 ProteinModelPortal:P50480 SMR:P50480
STRING:P50480 PRIDE:P50480 GeneID:57233 KEGG:rno:57233
UCSC:RGD:621849 InParanoid:P50480 EvolutionaryTrace:P50480
NextBio:611298 ArrayExpress:P50480 Genevestigator:P50480
GermOnline:ENSRNOG00000015336 Uniprot:P50480
Length = 360
Score = 159 (61.0 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 34/77 (44%), Positives = 43/77 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAPWQP 77
S P SP P P P
Sbjct: 154 S-----PRSPGPLPGTP 165
Score = 97 (39.2 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 185 VHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 237
Score = 60 (26.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 37 QFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>MGI|MGI:109156 [details] [associations]
symbol:Isl2 "insulin related protein 2 (islet 2)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IGI] [GO:0021524 "visceral motor neuron differentiation"
evidence=IGI;IMP] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IGI;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048663 "neuron fate commitment"
evidence=IGI;IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 MGI:MGI:109156
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 EMBL:CH466522 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 GO:GO:0031290 eggNOG:COG5576
GO:GO:0021520 HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304
OrthoDB:EOG4G4GQR GO:GO:0021524 OMA:RHDSAVQ CTD:64843 EMBL:AK013964
EMBL:AC116699 IPI:IPI00110854 RefSeq:NP_081673.2 UniGene:Mm.273996
PDB:3MMK PDBsum:3MMK ProteinModelPortal:Q9CXV0 STRING:Q9CXV0
PhosphoSite:Q9CXV0 PRIDE:Q9CXV0 DNASU:104360
Ensembl:ENSMUST00000034869 GeneID:104360 KEGG:mmu:104360
UCSC:uc009psm.1 InParanoid:Q9CXV0 NextBio:356992 CleanEx:MM_ISL2
Genevestigator:Q9CXV0 GermOnline:ENSMUSG00000032318 Uniprot:Q9CXV0
Length = 359
Score = 155 (59.6 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAP 74
S P SP P P
Sbjct: 154 S-----PRSPGPLP 162
Score = 100 (40.3 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 135 AGNS-SPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLS 190
AG+ P H H ++T R+RT QL T+++ + N PDA +QL + TGLS
Sbjct: 172 AGSGRQPSLRTHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLS 231
Query: 191 KRVLQ 195
RV++
Sbjct: 232 PRVIR 236
Score = 60 (26.2 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 37 QFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>ZFIN|ZDB-GENE-980526-562 [details] [associations]
symbol:isl2a "islet2a" species:7955 "Danio rerio"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IGI;IMP] [GO:0048665 "neuron fate specification"
evidence=IGI;IMP] [GO:0048675 "axon extension" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-562 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0048665 GeneTree:ENSGT00700000104050
GO:GO:0048676 eggNOG:COG5576 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR EMBL:D38453 EMBL:X88805
EMBL:U09403 IPI:IPI00483445 PIR:I51734 RefSeq:NP_571045.1
UniGene:Dr.281 ProteinModelPortal:P53406 SMR:P53406
Ensembl:ENSDART00000012862 GeneID:30157 KEGG:dre:30157 CTD:30157
InParanoid:P53406 OMA:RHDSAVQ NextBio:20806628 ArrayExpress:P53406
Bgee:P53406 Uniprot:P53406
Length = 359
Score = 149 (57.5 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
Identities = 32/70 (45%), Positives = 41/70 (58%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SS+LVMRARD V+H+ CF C C L GD F +RDE + CR + +L R G
Sbjct: 94 IGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRADHGLLMERASAG 153
Query: 61 SAEIEQPMSP 70
S P+SP
Sbjct: 154 S-----PISP 158
Score = 105 (42.0 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ +N N PDA +QL + TGLS RV++
Sbjct: 184 VHKQSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 236
Score = 59 (25.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 37 QYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>UNIPROTKB|Q96A47 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0021520 "spinal cord motor neuron cell
fate specification" evidence=IEA] [GO:0021524 "visceral motor
neuron differentiation" evidence=IEA] [GO:0031290 "retinal ganglion
cell axon guidance" evidence=IEA] [GO:0045665 "negative regulation
of neuron differentiation" evidence=IEA] [GO:0048935 "peripheral
nervous system neuron development" evidence=TAS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0048666 "neuron development" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:CH471136 GO:GO:0031290
GO:GO:0048935 eggNOG:COG5576 GO:GO:0021520 HOVERGEN:HBG004671
KO:K09370 HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR GO:GO:0021524
OMA:RHDSAVQ EMBL:AK001022 EMBL:BC011967 EMBL:BC012136
IPI:IPI00059240 RefSeq:NP_665804.1 UniGene:Hs.444677
ProteinModelPortal:Q96A47 SMR:Q96A47 STRING:Q96A47
PhosphoSite:Q96A47 DMDM:20978495 PRIDE:Q96A47 DNASU:64843
Ensembl:ENST00000290759 GeneID:64843 KEGG:hsa:64843 UCSC:uc002bbw.1
CTD:64843 GeneCards:GC15P076629 HGNC:HGNC:18524 MIM:609481
neXtProt:NX_Q96A47 PharmGKB:PA38566 InParanoid:Q96A47
PhylomeDB:Q96A47 GenomeRNAi:64843 NextBio:66950 Bgee:Q96A47
CleanEx:HS_ISL2 Genevestigator:Q96A47 GermOnline:ENSG00000159556
Uniprot:Q96A47
Length = 359
Score = 155 (59.6 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAP 74
S P SP P P
Sbjct: 154 S-----PRSPGPLP 162
Score = 98 (39.6 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 135 AGNS-SPGSGVHSHQRTK---RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLS 190
AG+ P H H++T+ R+RT QL T+++ + N PDA +QL + TGLS
Sbjct: 172 AGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLS 231
Query: 191 KRVLQ 195
RV++
Sbjct: 232 PRVIR 236
Score = 60 (26.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 37 QFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>ZFIN|ZDB-GENE-980526-112 [details] [associations]
symbol:isl1 "islet1" species:7955 "Danio rerio"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IMP]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048665 "neuron fate specification" evidence=IGI;IMP]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0055011 "atrial cardiac muscle cell differentiation"
evidence=IMP] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-112 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0048665
GeneTree:ENSGT00700000104050 GO:GO:0031017 eggNOG:COG5576 CTD:3670
HOVERGEN:HBG004671 KO:K09370 EMBL:D21135 EMBL:AL954694
EMBL:BC060892 IPI:IPI00487340 PIR:I51739 RefSeq:NP_571037.1
UniGene:Dr.75106 ProteinModelPortal:P53405 SMR:P53405 STRING:P53405
Ensembl:ENSDART00000010896 GeneID:30147 KEGG:dre:30147
HOGENOM:HOG000236304 InParanoid:A2AWM5 OMA:TDMGDMG
OrthoDB:EOG4G4GQR NextBio:20806622 Bgee:P53405 GO:GO:0055011
GO:GO:0048936 Uniprot:P53405
Length = 349
Score = 148 (57.2 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RATMG 142
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 143 AGDPLSPLHPARPLQMAAEPISARQPALR 171
Score = 105 (42.0 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ +N N PDA +QL + TGLS RV++
Sbjct: 174 VHKQPEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 61 (26.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 27 QYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
Score = 40 (19.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 13 RDLVFHLHCFTCISCGILLTKGDLFGMRDEM-IYCRPHYEILR 54
RD + L+ C C I +K D F MR +Y H E R
Sbjct: 69 RDYI-RLYGIKCAKCNIGFSKND-FVMRARSKVY---HIECFR 106
>UNIPROTKB|D6RAK3 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HGNC:HGNC:6132 EMBL:AC010478 IPI:IPI00966565
Ensembl:ENST00000505475 Bgee:D6RAK3 Uniprot:D6RAK3
Length = 260
Score = 148 (57.2 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 20 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RASLG 78
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 79 AGDPLSPLHPARPLQMAAEPISARQPALR 107
Score = 97 (39.2 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 110 VHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 162
>ZFIN|ZDB-GENE-990415-133 [details] [associations]
symbol:isl2b "islet2b" species:7955 "Danio rerio"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-990415-133 GO:GO:0007275 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
eggNOG:NOG264882 GeneTree:ENSGT00700000104050 HOVERGEN:HBG004671
HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR EMBL:D38454 EMBL:AL845510
EMBL:BC095011 EMBL:U09404 IPI:IPI00485578 PIR:I51735
RefSeq:NP_571039.1 UniGene:Dr.20916 ProteinModelPortal:P53407
SMR:P53407 STRING:P53407 Ensembl:ENSDART00000055936 GeneID:30151
KEGG:dre:30151 CTD:30151 InParanoid:P53407 OMA:HAHKQAE
NextBio:20806624 Bgee:P53407 Uniprot:P53407
Length = 358
Score = 148 (57.2 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 32/70 (45%), Positives = 41/70 (58%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +RDE + CR + + R G
Sbjct: 94 LGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSVRDEELLCRADHGLALERGPGG 153
Query: 61 SAEIEQPMSP 70
S P+SP
Sbjct: 154 S-----PLSP 158
Score = 105 (42.0 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ +N N PDA +QL + TGLS RV++
Sbjct: 184 VHKQSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 236
Score = 63 (27.2 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C+ C L + +RD YC+ Y
Sbjct: 37 QYILRVSPDLEWHAACLKCVECNQYLDETCTCFVRDGKTYCKRDY 81
>UNIPROTKB|E1BM60 [details] [associations]
symbol:ISL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IEA] [GO:0031290
"retinal ganglion cell axon guidance" evidence=IEA] [GO:0021524
"visceral motor neuron differentiation" evidence=IEA] [GO:0021520
"spinal cord motor neuron cell fate specification" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
GO:GO:0031290 GO:GO:0021520 GO:GO:0021524 OMA:RHDSAVQ
EMBL:DAAA02052446 IPI:IPI00701951 UniGene:Bt.34422
Ensembl:ENSBTAT00000022147 NextBio:20928153 Uniprot:E1BM60
Length = 359
Score = 155 (59.6 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 94 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 153
Query: 61 SAEIEQPMSPRPAP 74
S P SP P P
Sbjct: 154 S-----PRSPGPLP 162
Score = 97 (39.2 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 184 VHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 236
Score = 60 (26.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 37 QFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>UNIPROTKB|P53410 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOVERGEN:HBG004671 EMBL:L35568
IPI:IPI00574086 PIR:I50370 UniGene:Gga.790
ProteinModelPortal:P53410 SMR:P53410 Uniprot:P53410
Length = 319
Score = 146 (56.5 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 35/82 (42%), Positives = 41/82 (50%)
Query: 4 SSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAE 63
SSS+LVMRARD V+HL CF C +CG L GD F +R+ + CR H A
Sbjct: 60 SSSDLVMRARDHVYHLECFRCAACGRQLLPGDQFCLRERDLLCRAD-----HGPPPDGAA 114
Query: 64 IEQPMSPRPAPWQPTTVQKGRP 85
P SP P P GRP
Sbjct: 115 ARGPRSPAPPPAHLAEPVPGRP 136
Score = 101 (40.6 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 140 PGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
PG SH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 137 PGPRPQSHKAAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 195
Score = 65 (27.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 14 DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
DL +H+ C C CG L + +RD YC+ Y
Sbjct: 8 DLEWHVACLKCAECGQPLDETCTCFLRDGKAYCKRDY 44
>UNIPROTKB|D6RBJ1 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HOGENOM:HOG000236304 HGNC:HGNC:6132
EMBL:AC010478 IPI:IPI00966899 ProteinModelPortal:D6RBJ1 SMR:D6RBJ1
Ensembl:ENST00000511384 ArrayExpress:D6RBJ1 Bgee:D6RBJ1
Uniprot:D6RBJ1
Length = 326
Score = 148 (57.2 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RASLG 142
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 143 AGDPLSPLHPARPLQMAAEPISARQPALR 171
Score = 97 (39.2 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 174 VHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 61 (26.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 27 QYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
>UNIPROTKB|A6H796 [details] [associations]
symbol:ISL1 "ISL1 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA] [GO:0060913
"cardiac cell fate determination" evidence=IEA] [GO:0060413 "atrial
septum morphogenesis" evidence=IEA] [GO:0060384 "innervation"
evidence=IEA] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IEA] [GO:0060037 "pharyngeal system
development" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IEA]
[GO:0048880 "sensory system development" evidence=IEA] [GO:0045766
"positive regulation of angiogenesis" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032755 "positive regulation of interleukin-6
production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032731 "positive
regulation of interleukin-1 beta production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=IEA] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021559
"trigeminal nerve development" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021520 "spinal
cord motor neuron cell fate specification" evidence=IEA]
[GO:0010575 "positive regulation vascular endothelial growth factor
production" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=IEA] [GO:0003148 "outflow tract
septum morphogenesis" evidence=IEA] [GO:0003139 "secondary heart
field specification" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0001158 "enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0021559 GO:GO:0001158
GO:GO:0042517 GeneTree:ENSGT00700000104050 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0060413 GO:GO:0003266 eggNOG:COG5576 GO:GO:0003148
GO:GO:0003215 GO:GO:0060384 GO:GO:0021520 CTD:3670
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OMA:TDMGDMG
OrthoDB:EOG4G4GQR GO:GO:0048936 GO:GO:0060913 GO:GO:0060379
GO:GO:0048880 GO:GO:0021524 EMBL:DAAA02050419 EMBL:BC146163
IPI:IPI00854388 RefSeq:NP_001092600.1 UniGene:Bt.28168 SMR:A6H796
STRING:A6H796 Ensembl:ENSBTAT00000001638 GeneID:614040
KEGG:bta:614040 InParanoid:A6H796 NextBio:20898906 Uniprot:A6H796
Length = 349
Score = 148 (57.2 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RASLG 142
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 143 AGDPLSPLHPARPLQMAAEPISARQPALR 171
Score = 97 (39.2 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 174 VHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 27 QYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
>UNIPROTKB|P61371 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0003266 "regulation of secondary heart
field cardioblast proliferation" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0008284 "positive regulation
of cell proliferation" evidence=IEA] [GO:0021520 "spinal cord motor
neuron cell fate specification" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021983 "pituitary
gland development" evidence=IEA] [GO:0031103 "axon regeneration"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0060379 "cardiac muscle cell myoblast differentiation"
evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=ISS] [GO:0010575 "positive
regulation vascular endothelial growth factor production"
evidence=ISS] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=ISS] [GO:0032731 "positive regulation of
interleukin-1 beta production" evidence=ISS] [GO:0032755 "positive
regulation of interleukin-6 production" evidence=ISS] [GO:0045766
"positive regulation of angiogenesis" evidence=ISS] [GO:0071657
"positive regulation of granulocyte colony-stimulating factor
production" evidence=ISS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IDA;NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0021522
"spinal cord motor neuron differentiation" evidence=ISS]
[GO:0048762 "mesenchymal cell differentiation" evidence=ISS]
[GO:0031016 "pancreas development" evidence=ISS] [GO:1901258
"positive regulation of macrophage colony-stimulating factor
production" evidence=ISS] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=ISS] [GO:0032730 "positive regulation of interleukin-1
alpha production" evidence=ISS] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=ISS] [GO:0032760 "positive
regulation of tumor necrosis factor production" evidence=ISS]
[GO:0050728 "negative regulation of inflammatory response"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0048936 "peripheral nervous system
neuron axonogenesis" evidence=ISS] [GO:0048665 "neuron fate
specification" evidence=ISS] [GO:0021559 "trigeminal nerve
development" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0048880 "sensory system
development" evidence=ISS] [GO:0060384 "innervation" evidence=ISS]
[GO:0060413 "atrial septum morphogenesis" evidence=ISS] [GO:0060037
"pharyngeal system development" evidence=ISS] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=ISS]
[GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS]
[GO:0003151 "outflow tract morphogenesis" evidence=ISS] [GO:0003148
"outflow tract septum morphogenesis" evidence=ISS] [GO:0003139
"secondary heart field specification" evidence=IMP] [GO:0043425
"bHLH transcription factor binding" evidence=IPI] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=IPI] [GO:0060913 "cardiac cell fate
determination" evidence=IDA] [GO:0071385 "cellular response to
glucocorticoid stimulus" evidence=ISS] [GO:0032024 "positive
regulation of insulin secretion" evidence=IC] [GO:0090074 "negative
regulation of protein homodimerization activity" evidence=ISS]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISS] [GO:0030331 "estrogen receptor
binding" evidence=ISS] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0050728 GO:GO:0008270 GO:GO:0071385 GO:GO:0045665
GO:GO:0043524 GO:GO:0032755 GO:GO:0010575 GO:GO:0032024
GO:GO:0003700 GO:GO:0045766 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0060037 GO:GO:0090090 GO:GO:0032731 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0030331 GO:GO:0021559
GO:GO:0001158 GO:GO:0042517 GO:GO:0048665 GO:GO:0032729
GO:GO:0032760 GO:GO:0016922 GO:GO:0031103 GO:GO:0055010
GO:GO:0003203 GO:GO:0048762 GO:GO:0003139 GO:GO:0031290
GO:GO:0043388 GO:GO:0032730 GO:GO:0032735 GO:GO:0071657
GO:GO:0060413 GO:GO:0033147 GO:GO:0003266 eggNOG:COG5576
GO:GO:0003148 GO:GO:0003215 GO:GO:0060384 GO:GO:0021520
GO:GO:0032725 CTD:3670 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OMA:TDMGDMG OrthoDB:EOG4G4GQR GO:GO:0048936
EMBL:S70721 EMBL:U07559 EMBL:BC031213 IPI:IPI00025071 PIR:I53277
RefSeq:NP_002193.2 UniGene:Hs.505 ProteinModelPortal:P61371
SMR:P61371 IntAct:P61371 STRING:P61371 PhosphoSite:P61371
DMDM:47606423 PRIDE:P61371 DNASU:3670 Ensembl:ENST00000230658
GeneID:3670 KEGG:hsa:3670 UCSC:uc003jor.3 GeneCards:GC05P050714
HGNC:HGNC:6132 MIM:600366 neXtProt:NX_P61371 PharmGKB:PA29932
InParanoid:P61371 PhylomeDB:P61371 GenomeRNAi:3670 NextBio:14363
ArrayExpress:P61371 Bgee:P61371 CleanEx:HS_ISL1
Genevestigator:P61371 GermOnline:ENSG00000016082 GO:GO:0060913
GO:GO:0060379 GO:GO:0090074 GO:GO:0048880 GO:GO:0021524
Uniprot:P61371
Length = 349
Score = 148 (57.2 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RASLG 142
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 143 AGDPLSPLHPARPLQMAAEPISARQPALR 171
Score = 97 (39.2 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 174 VHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 27 QYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
>MGI|MGI:101791 [details] [associations]
symbol:Isl1 "ISL1 transcription factor, LIM/homeodomain"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO;IDA] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=ISO] [GO:0001755 "neural
crest cell migration" evidence=IGI] [GO:0003007 "heart
morphogenesis" evidence=IGI] [GO:0003139 "secondary heart field
specification" evidence=ISO] [GO:0003148 "outflow tract septum
morphogenesis" evidence=IGI] [GO:0003151 "outflow tract
morphogenesis" evidence=IGI] [GO:0003203 "endocardial cushion
morphogenesis" evidence=IGI] [GO:0003215 "cardiac right ventricle
morphogenesis" evidence=IGI] [GO:0003266 "regulation of secondary
heart field cardioblast proliferation" evidence=IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007507
"heart development" evidence=IMP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0010575 "positive regulation vascular
endothelial growth factor production" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IGI] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021524 "visceral motor neuron
differentiation" evidence=IGI] [GO:0021559 "trigeminal nerve
development" evidence=IMP] [GO:0021983 "pituitary gland
development" evidence=IMP] [GO:0030182 "neuron differentiation"
evidence=IGI;IMP] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0031016 "pancreas development" evidence=IMP]
[GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP]
[GO:0032024 "positive regulation of insulin secretion"
evidence=ISO] [GO:0032725 "positive regulation of granulocyte
macrophage colony-stimulating factor production" evidence=IDA]
[GO:0032729 "positive regulation of interferon-gamma production"
evidence=IDA] [GO:0032730 "positive regulation of interleukin-1
alpha production" evidence=IDA] [GO:0032731 "positive regulation of
interleukin-1 beta production" evidence=IDA] [GO:0032735 "positive
regulation of interleukin-12 production" evidence=IDA] [GO:0032755
"positive regulation of interleukin-6 production" evidence=IDA]
[GO:0032760 "positive regulation of tumor necrosis factor
production" evidence=IDA] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0042517 "positive regulation of tyrosine phosphorylation of
Stat3 protein" evidence=IDA] [GO:0043388 "positive regulation of
DNA binding" evidence=IDA] [GO:0043425 "bHLH transcription factor
binding" evidence=ISO] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=ISO] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IGI] [GO:0045766 "positive regulation of
angiogenesis" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IDA;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048663 "neuron fate commitment" evidence=IGI]
[GO:0048665 "neuron fate specification" evidence=IMP] [GO:0048762
"mesenchymal cell differentiation" evidence=IMP] [GO:0048880
"sensory system development" evidence=IMP] [GO:0048936 "peripheral
nervous system neuron axonogenesis" evidence=IMP] [GO:0050728
"negative regulation of inflammatory response" evidence=IMP]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IGI] [GO:0060037 "pharyngeal system development"
evidence=IGI] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IMP] [GO:0060384 "innervation"
evidence=IMP] [GO:0060413 "atrial septum morphogenesis"
evidence=IGI] [GO:0060913 "cardiac cell fate determination"
evidence=ISO;IMP] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IDA] [GO:0090074
"negative regulation of protein homodimerization activity"
evidence=ISO] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IGI] [GO:1901258 "positive
regulation of macrophage colony-stimulating factor production"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:101791 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008284 GO:GO:0001755 GO:GO:0050728
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0032755
GO:GO:0010575 GO:GO:0032024 GO:GO:0003700 GO:GO:0045766
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0032731
GO:GO:0031016 GO:GO:0021983 GO:GO:0001105 GO:GO:0021559
GO:GO:0001158 GO:GO:0042517 GO:GO:0032729 GO:GO:0032760
GeneTree:ENSGT00700000104050 GO:GO:0031103 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0032730 GO:GO:0032735 GO:GO:0071657 GO:GO:0060413
GO:GO:0003266 eggNOG:COG5576 GO:GO:0003148 GO:GO:0003215
GO:GO:0060384 GO:GO:0021520 GO:GO:0032725 CTD:3670
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OMA:TDMGDMG
OrthoDB:EOG4G4GQR GO:GO:0048936 GO:GO:0060913 GO:GO:0060379
GO:GO:0048880 GO:GO:0021524 EMBL:AJ132765 EMBL:AB104633
IPI:IPI00121604 IPI:IPI00415262 RefSeq:NP_067434.3 UniGene:Mm.42242
PDB:2RGT PDBsum:2RGT ProteinModelPortal:P61372 SMR:P61372
MINT:MINT-4594016 STRING:P61372 PhosphoSite:P61372 PRIDE:P61372
Ensembl:ENSMUST00000036060 Ensembl:ENSMUST00000176044 GeneID:16392
KEGG:mmu:16392 UCSC:uc007ryf.2 InParanoid:P61372
EvolutionaryTrace:P61372 NextBio:289537 Bgee:P61372 CleanEx:MM_ISL1
Genevestigator:P61372 GermOnline:ENSMUSG00000042258 Uniprot:P61372
Length = 349
Score = 148 (57.2 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RASLG 142
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 143 AGDPLSPLHPARPLQMAAEPISARQPALR 171
Score = 97 (39.2 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 174 VHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 27 QYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
>RGD|61957 [details] [associations]
symbol:Isl1 "ISL LIM homeobox 1" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA;ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA;ISO] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=IEA;ISO] [GO:0001755 "neural
crest cell migration" evidence=IEA;ISO] [GO:0003007 "heart
morphogenesis" evidence=ISO] [GO:0003139 "secondary heart field
specification" evidence=IEA;ISO] [GO:0003148 "outflow tract septum
morphogenesis" evidence=IEA;ISO] [GO:0003151 "outflow tract
morphogenesis" evidence=ISO] [GO:0003203 "endocardial cushion
morphogenesis" evidence=IEA;ISO] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA;ISO] [GO:0003266 "regulation
of secondary heart field cardioblast proliferation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=IEA;ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0007507 "heart development"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA;ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010575 "positive regulation vascular endothelial
growth factor production" evidence=IEA;ISO] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IDA;IPI]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA;ISO] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=ISO] [GO:0021524 "visceral motor neuron
differentiation" evidence=IEA;ISO] [GO:0021559 "trigeminal nerve
development" evidence=IEA;ISO] [GO:0021983 "pituitary gland
development" evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0031016 "pancreas development" evidence=IEA;ISO] [GO:0031103
"axon regeneration" evidence=IEP] [GO:0031290 "retinal ganglion cell
axon guidance" evidence=IEA;ISO] [GO:0032024 "positive regulation of
insulin secretion" evidence=IMP] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA;ISO] [GO:0032729 "positive regulation of
interferon-gamma production" evidence=IEA;ISO] [GO:0032730 "positive
regulation of interleukin-1 alpha production" evidence=IEA;ISO]
[GO:0032731 "positive regulation of interleukin-1 beta production"
evidence=IEA;ISO] [GO:0032735 "positive regulation of interleukin-12
production" evidence=IEA;ISO] [GO:0032755 "positive regulation of
interleukin-6 production" evidence=IEA;ISO] [GO:0032760 "positive
regulation of tumor necrosis factor production" evidence=IEA;ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=IDA] [GO:0042517 "positive regulation of
tyrosine phosphorylation of Stat3 protein" evidence=IEA;ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA;ISO]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA;ISO]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0045766 "positive regulation
of angiogenesis" evidence=IEA;ISO] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0048663 "neuron fate commitment" evidence=ISO] [GO:0048665
"neuron fate specification" evidence=ISO] [GO:0048762 "mesenchymal
cell differentiation" evidence=ISO] [GO:0048880 "sensory system
development" evidence=IEA;ISO] [GO:0048936 "peripheral nervous
system neuron axonogenesis" evidence=IEA;ISO] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA;ISO] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=IEA;ISO]
[GO:0060037 "pharyngeal system development" evidence=IEA;ISO]
[GO:0060379 "cardiac muscle cell myoblast differentiation"
evidence=IEA;ISO] [GO:0060384 "innervation" evidence=IEA;ISO]
[GO:0060413 "atrial septum morphogenesis" evidence=IEA;ISO]
[GO:0060913 "cardiac cell fate determination" evidence=IEA;ISO]
[GO:0071385 "cellular response to glucocorticoid stimulus"
evidence=IEP] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA;ISO] [GO:0090074
"negative regulation of protein homodimerization activity"
evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA;ISO] [GO:1901258 "positive
regulation of macrophage colony-stimulating factor production"
evidence=ISO] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:61957 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0001755 GO:GO:0043565 GO:GO:0008270 GO:GO:0071385
GO:GO:0045944 GO:GO:0045665 GO:GO:0043524 GO:GO:0032024
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090
GO:GO:0031016 GO:GO:0021983 GO:GO:0001105 GO:GO:0030331
GO:GO:0021559 GO:GO:0001158 GO:GO:0042517
GeneTree:ENSGT00700000104050 GO:GO:0016922 GO:GO:0031103
GO:GO:0055010 GO:GO:0003203 GO:GO:0003139 GO:GO:0031290
GO:GO:0043388 GO:GO:0060413 GO:GO:0033147 GO:GO:0003266
eggNOG:COG5576 GO:GO:0003148 GO:GO:0003215 GO:GO:0060384
GO:GO:0021520 CTD:3670 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OMA:TDMGDMG OrthoDB:EOG4G4GQR GO:GO:0048936
GO:GO:0060913 GO:GO:0060379 GO:GO:0090074 GO:GO:0048880
GO:GO:0021524 EMBL:S69329 EMBL:AY557632 EMBL:X53258 IPI:IPI00201439
IPI:IPI00417237 PIR:I67417 RefSeq:NP_059035.3 UniGene:Rn.36202
ProteinModelPortal:P61374 SMR:P61374 STRING:P61374
PhosphoSite:P61374 PRIDE:P61374 Ensembl:ENSRNOT00000017305
GeneID:64444 KEGG:rno:64444 InParanoid:P61374 NextBio:613174
Genevestigator:P61374 GermOnline:ENSRNOG00000012556 Uniprot:P61374
Length = 349
Score = 148 (57.2 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RASLG 142
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 143 AGDPLSPLHPARPLQMAAEPISARQPALR 171
Score = 97 (39.2 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 174 VHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 27 QYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
>UNIPROTKB|F1PP21 [details] [associations]
symbol:ISL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:TDMGDMG EMBL:AAEX03003122
Ensembl:ENSCAFT00000029303 Uniprot:F1PP21
Length = 360
Score = 148 (57.2 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 94 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RASLG 152
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 153 AGDPLSPLHPARPLQMAAEPISARQPALR 181
Score = 97 (39.2 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 184 VHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 236
Score = 61 (26.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 37 QYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 81
>UNIPROTKB|F1SMF7 [details] [associations]
symbol:ISL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA] [GO:0060913
"cardiac cell fate determination" evidence=IEA] [GO:0060413 "atrial
septum morphogenesis" evidence=IEA] [GO:0060384 "innervation"
evidence=IEA] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IEA] [GO:0060037 "pharyngeal system
development" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IEA]
[GO:0048880 "sensory system development" evidence=IEA] [GO:0045766
"positive regulation of angiogenesis" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032755 "positive regulation of interleukin-6
production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032731 "positive
regulation of interleukin-1 beta production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=IEA] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021559
"trigeminal nerve development" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021520 "spinal
cord motor neuron cell fate specification" evidence=IEA]
[GO:0010575 "positive regulation vascular endothelial growth factor
production" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=IEA] [GO:0003148 "outflow tract
septum morphogenesis" evidence=IEA] [GO:0003139 "secondary heart
field specification" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0001158 "enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0021559 GO:GO:0001158
GO:GO:0042517 GeneTree:ENSGT00700000104050 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0060413 GO:GO:0003266 GO:GO:0003148 GO:GO:0003215
GO:GO:0060384 GO:GO:0021520 OMA:TDMGDMG GO:GO:0048936 GO:GO:0060913
GO:GO:0060379 GO:GO:0048880 GO:GO:0021524 EMBL:CU915536
Ensembl:ENSSSCT00000018387 Uniprot:F1SMF7
Length = 361
Score = 148 (57.2 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 96 IGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RASLG 154
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 155 AGDPLSPLHPARPLQMAAEPISARQPALR 183
Score = 97 (39.2 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 186 VHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 238
Score = 61 (26.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 39 QYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 83
>UNIPROTKB|P50211 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:L35567
IPI:IPI00598855 PIR:I50369 RefSeq:NP_990745.1 UniGene:Gga.1507
ProteinModelPortal:P50211 SMR:P50211 GeneID:396383 KEGG:gga:396383
CTD:3670 HOVERGEN:HBG004671 KO:K09370 NextBio:20816425
Uniprot:P50211
Length = 349
Score = 146 (56.5 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G S ++ VMRAR V+H+ CF C++C L GD F +R++ ++CR ++++ R G
Sbjct: 84 IGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE-RASLG 142
Query: 61 SAEIEQPMSP-RPAPWQPTTVQKGRPRKR 88
+ + P+ P RP + +P R
Sbjct: 143 AGDPLSPLHPARPLQMAAEPISARQPALR 171
Score = 97 (39.2 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 144 VHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
VH ++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 174 VHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 59 (25.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+ ++R DL +H C C C L + +RD YC+ Y
Sbjct: 27 QYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDY 71
>WB|WBGene00002987 [details] [associations]
symbol:lim-4 species:6239 "Caenorhabditis elegans"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001708 "cell fate specification"
evidence=IMP] [GO:0005623 "cell" evidence=IDA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0001708
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0005623
GeneTree:ENSGT00700000104050 EMBL:FO081410 HSSP:P50480 EMBL:U72348
PIR:T27637 RefSeq:NP_508669.1 UniGene:Cel.665
ProteinModelPortal:G5EEA1 SMR:G5EEA1 EnsemblMetazoa:ZC64.4
GeneID:180672 KEGG:cel:CELE_ZC64.4 CTD:180672 WormBase:ZC64.4
OMA:ARQKKWH NextBio:910388 Uniprot:G5EEA1
Length = 355
Score = 143 (55.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 142 SGVHSHQ-RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SGV S + +TKR+RT+F QL +++YFN + NPD DL+++A TGLSKRV Q
Sbjct: 230 SGVSSQKAKTKRVRTTFAEDQLSVLQTYFNRDSNPDGADLEKIASMTGLSKRVTQ 284
Score = 99 (39.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
I +++ V RAR+ V+HL CF+C C L+ G+ + +++ + C+ H+
Sbjct: 175 IQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHF 222
>UNIPROTKB|H0YM35 [details] [associations]
symbol:LHX2 "LIM/homeobox protein Lhx2" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000988
"protein binding transcription factor activity" evidence=IEA]
[GO:0001843 "neural tube closure" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA]
[GO:0007498 "mesoderm development" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0021978
"telencephalon regionalization" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0005634 GO:GO:0007411 GO:GO:0007498 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 Gene3D:2.10.110.10
GO:GO:0001843 GO:GO:0009953 GO:GO:0021978 GO:GO:0000988
EMBL:AC006450 GO:GO:2000678 HGNC:HGNC:6594 ChiTaRS:LHX2
EMBL:AL158052 Ensembl:ENST00000560961 Bgee:H0YM35 Uniprot:H0YM35
Length = 147
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDY 58
+GIS+SE+VMRARDLV+HL+CFTC +C +LT GD FGM+D ++YCR H+E L +Y
Sbjct: 79 LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEY 136
>UNIPROTKB|F1NL26 [details] [associations]
symbol:F1NL26 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02026365 EMBL:AADN02026363
EMBL:AADN02026364 IPI:IPI01017195 Ensembl:ENSGALT00000038819
Uniprot:F1NL26
Length = 234
Score = 120 (47.3 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 97 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 147
Score = 117 (46.2 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 179 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 223
>UNIPROTKB|J9PBA6 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AAEX03004901 EMBL:AAEX03004902
Ensembl:ENSCAFT00000043981 Uniprot:J9PBA6
Length = 295
Score = 122 (48.0 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 146 SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 159 NHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 209
Score = 117 (46.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 82 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 132
Score = 65 (27.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ DL +H+ C +C C L + ++D+ I+C+ Y
Sbjct: 26 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 67
>UNIPROTKB|C8YLT4 [details] [associations]
symbol:Lhx8 "LIM homeobox 8" species:9823 "Sus scrofa"
[GO:0005634 "nucleus" evidence=IEA] [GO:0042475 "odontogenesis of
dentin-containing tooth" evidence=IEA] [GO:0021884 "forebrain
neuron development" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0007611 "learning or memory"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 KO:K09375 CTD:431707 OMA:MYWKSDQ
EMBL:CU929623 EMBL:FJ587986 RefSeq:NP_001159787.1 UniGene:Ssc.78542
Ensembl:ENSSSCT00000004181 GeneID:100310798 KEGG:ssc:100310798
Uniprot:C8YLT4
Length = 295
Score = 122 (48.0 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 146 SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 159 NHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 209
Score = 117 (46.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 82 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 132
Score = 65 (27.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ DL +H+ C +C C L + ++D+ I+C+ Y
Sbjct: 26 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 67
>ZFIN|ZDB-GENE-031008-2 [details] [associations]
symbol:lhx8a "LIM homeobox 8a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-031008-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006261 KO:K09375 EMBL:BC117601 EMBL:AY664404
IPI:IPI00487481 RefSeq:NP_001003980.1 UniGene:Dr.82056
STRING:Q6BDC3 GeneID:378959 KEGG:dre:378959 CTD:378959
InParanoid:Q6BDC3 NextBio:20813902 Uniprot:Q6BDC3
Length = 332
Score = 123 (48.4 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 144 VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
V+ + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 195 VNQPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 246
Score = 117 (46.2 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ +HL CF C SC L+ G+ F + DE + CR HY+ +
Sbjct: 119 IHSNDWVRRAKGNTYHLACFACFSCKRQLSTGEEFALVDERVLCRVHYDCM 169
Score = 58 (25.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ D+ +H+ C +C C L + ++++ I+C+ Y
Sbjct: 63 LLKVNDMCWHVRCLSCSVCQTSLGRHISCYIKEKEIFCKLDY 104
>UNIPROTKB|F6QGM2 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0000988 EMBL:AADN02026398 IPI:IPI00820696
ProteinModelPortal:F6QGM2 Ensembl:ENSGALT00000006259
ArrayExpress:F6QGM2 Uniprot:F6QGM2
Length = 214
Score = 131 (51.2 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 149
Score = 80 (33.2 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+K+ +N + P +QL+ +TGL RV+Q
Sbjct: 155 KRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
>UNIPROTKB|E9PGE3 [details] [associations]
symbol:LHX8 "LIM/homeobox protein Lhx8" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0007611 "learning or memory" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884 KO:K09375
EMBL:AC099786 RefSeq:NP_001243043.1 UniGene:Hs.403934 GeneID:431707
KEGG:hsa:431707 CTD:431707 HGNC:HGNC:28838 GenomeRNAi:431707
IPI:IPI00480117 ProteinModelPortal:E9PGE3 SMR:E9PGE3
Ensembl:ENST00000356261 ArrayExpress:E9PGE3 Bgee:E9PGE3
Uniprot:E9PGE3
Length = 346
Score = 122 (48.0 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 146 SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 210 NHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 260
Score = 117 (46.2 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 133 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 183
Score = 65 (27.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ DL +H+ C +C C L + ++D+ I+C+ Y
Sbjct: 77 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 118
>UNIPROTKB|F1P4G9 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0042475 "odontogenesis of
dentin-containing tooth" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:AADN02012385
IPI:IPI00572692 Ensembl:ENSGALT00000018546 Uniprot:F1P4G9
Length = 347
Score = 122 (48.0 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 146 SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 211 NHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 261
Score = 117 (46.2 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 134 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 184
Score = 65 (27.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ DL +H+ C +C C L + ++D+ I+C+ Y
Sbjct: 78 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 119
>UNIPROTKB|Q68G74 [details] [associations]
symbol:LHX8 "LIM/homeobox protein Lhx8" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007611 "learning or memory" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0007611 Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884
eggNOG:NOG264882 HSSP:P06601 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 EMBL:AC099786 EMBL:BC040321
IPI:IPI00470355 RefSeq:NP_001001933.1 RefSeq:NP_001243043.1
UniGene:Hs.403934 ProteinModelPortal:Q68G74 SMR:Q68G74
STRING:Q68G74 PhosphoSite:Q68G74 DMDM:296434566 PRIDE:Q68G74
DNASU:431707 Ensembl:ENST00000294638 GeneID:431707 KEGG:hsa:431707
UCSC:uc001dgo.3 CTD:431707 GeneCards:GC01P075594 HGNC:HGNC:28838
MIM:604425 neXtProt:NX_Q68G74 PharmGKB:PA142671553
InParanoid:Q68G74 OMA:MYWKSDQ OrthoDB:EOG48WC27 GenomeRNAi:431707
NextBio:108706 ArrayExpress:Q68G74 Bgee:Q68G74 CleanEx:HS_LHX8
Genevestigator:Q68G74 Uniprot:Q68G74
Length = 356
Score = 122 (48.0 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 146 SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 220 NHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 270
Score = 117 (46.2 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 143 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 193
Score = 65 (27.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ DL +H+ C +C C L + ++D+ I+C+ Y
Sbjct: 87 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 128
>ZFIN|ZDB-GENE-041025-1 [details] [associations]
symbol:lhx6 "LIM homeobox 6" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-041025-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 CTD:26468 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 OMA:PATDQVM OrthoDB:EOG4GTKD8
EMBL:BX571668 EMBL:BC162225 EMBL:AY664403 IPI:IPI00495496
RefSeq:NP_001004015.1 UniGene:Dr.33994 STRING:Q6BDC4
Ensembl:ENSDART00000021100 GeneID:445565 KEGG:dre:445565
InParanoid:Q6BDC4 NextBio:20832189 Uniprot:Q6BDC4
Length = 375
Score = 122 (48.0 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY----EILRHRDY 58
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY E L+
Sbjct: 165 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMVENLKRAAE 224
Query: 59 CGSAEIEQPMSPRPAPWQPTTVQKGR 84
GS + P QP ++ R
Sbjct: 225 SGSGLTLEGAVPSEQDSQPKPAKRAR 250
Score = 117 (46.2 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 247 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 291
Score = 60 (26.2 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ +L++H+ C C C L + ++++ I+C+ Y
Sbjct: 109 LLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDY 150
>UNIPROTKB|E2REU0 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:AAEX03004901
EMBL:AAEX03004902 Ensembl:ENSCAFT00000032488 Uniprot:E2REU0
Length = 379
Score = 122 (48.0 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 146 SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 243 NHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 293
Score = 117 (46.2 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 166 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 216
Score = 65 (27.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ DL +H+ C +C C L + ++D+ I+C+ Y
Sbjct: 110 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 151
>UNIPROTKB|O97581 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0045893 GO:GO:0046872
GO:GO:0003677 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 EMBL:AF063245 UniGene:Ssc.26829
ProteinModelPortal:O97581 SMR:O97581 Uniprot:O97581
Length = 383
Score = 132 (51.5 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 80 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 137
Score = 85 (35.0 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 143 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 187
>UNIPROTKB|E2QZZ9 [details] [associations]
symbol:LHX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177
EMBL:AAEX03006759 EMBL:AAEX03006760 EMBL:AAEX03006761
Ensembl:ENSCAFT00000031319 Uniprot:E2QZZ9
Length = 397
Score = 132 (51.5 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 157
Score = 85 (35.0 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 163 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>UNIPROTKB|Q9UBR4 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0009887 "organ morphogenesis" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0045944
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0005667 GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0021983 GO:GO:0048839 GO:GO:0021527 EMBL:AL138781
GO:GO:0000988 GO:GO:0021521 Orphanet:226307 eggNOG:NOG275246
HOGENOM:HOG000231629 KO:K09374 GO:GO:0021520 HOVERGEN:HBG006263
CTD:8022 OMA:PLCAGCN EMBL:AF156888 EMBL:AF156889 EMBL:AH008761
EMBL:AF096169 EMBL:AF214637 EMBL:AF367089 EMBL:AF367085
EMBL:AF367086 EMBL:AF367087 EMBL:AF367088 IPI:IPI00002747
IPI:IPI00220680 RefSeq:NP_055379.1 RefSeq:NP_835258.1
UniGene:Hs.148427 ProteinModelPortal:Q9UBR4 SMR:Q9UBR4
STRING:Q9UBR4 PhosphoSite:Q9UBR4 DMDM:12643415 PRIDE:Q9UBR4
DNASU:8022 Ensembl:ENST00000371746 Ensembl:ENST00000371748
GeneID:8022 KEGG:hsa:8022 UCSC:uc004cha.3 GeneCards:GC09M139088
HGNC:HGNC:6595 MIM:221750 MIM:600577 neXtProt:NX_Q9UBR4
Orphanet:231720 PharmGKB:PA30366 OrthoDB:EOG4SBDZ0 ChiTaRS:LHX3
GenomeRNAi:8022 NextBio:30588 ArrayExpress:Q9UBR4 Bgee:Q9UBR4
CleanEx:HS_LHX3 Genevestigator:Q9UBR4 GermOnline:ENSG00000107187
GO:GO:0021526 Uniprot:Q9UBR4
Length = 397
Score = 132 (51.5 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 95 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 152
Score = 85 (35.0 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 158 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
>MGI|MGI:102673 [details] [associations]
symbol:Lhx3 "LIM homeobox protein 3" species:10090 "Mus
musculus" [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001890
"placenta development" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IGI] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IDA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IGI] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IDA] [GO:0021983
"pituitary gland development" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IMP] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:102673 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890 GO:GO:0021983
GO:GO:0048839 GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 GO:GO:0021520 PDB:2RGT PDBsum:2RGT PDB:2JTN PDBsum:2JTN
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN OrthoDB:EOG4SBDZ0
GO:GO:0021526 EMBL:L33776 EMBL:L38857 EMBL:L38249 EMBL:L38248
IPI:IPI00118214 IPI:IPI00263557 PIR:I59360 RefSeq:NP_001034742.1
UniGene:Mm.386765 ProteinModelPortal:P50481 SMR:P50481
MINT:MINT-7009840 STRING:P50481 PhosphoSite:P50481 PRIDE:P50481
Ensembl:ENSMUST00000028302 Ensembl:ENSMUST00000054099 GeneID:16871
KEGG:mmu:16871 EvolutionaryTrace:P50481 NextBio:290838 Bgee:P50481
CleanEx:MM_LHX3 Genevestigator:P50481 GermOnline:ENSMUSG00000026934
Uniprot:P50481
Length = 400
Score = 132 (51.5 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 155
Score = 85 (35.0 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 161 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
>UNIPROTKB|G3V8E3 [details] [associations]
symbol:Lhx3 "Protein Lhx3" species:10116 "Rattus
norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 RefSeq:XP_002726117.1 RefSeq:XP_002729190.1
UniGene:Rn.198623 PRIDE:G3V8E3 Ensembl:ENSRNOT00000025047
GeneID:170671 KEGG:rno:170671 NextBio:621169 Uniprot:G3V8E3
Length = 400
Score = 132 (51.5 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 98 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 155
Score = 85 (35.0 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 161 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
>UNIPROTKB|G3V9E7 [details] [associations]
symbol:Lhx3 "RCG45383, isoform CRA_b" species:10116 "Rattus
norvegicus" [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0048839 "inner ear development" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 OMA:PLCAGCN UniGene:Rn.198623 GeneID:170671
KEGG:rno:170671 NextBio:621169 RefSeq:XP_001059910.2
RefSeq:XP_001078243.2 Ensembl:ENSRNOT00000045587 Uniprot:G3V9E7
Length = 402
Score = 132 (51.5 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 157
Score = 85 (35.0 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 163 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>UNIPROTKB|L7N0D8 [details] [associations]
symbol:LHX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] GeneTree:ENSGT00700000104177
EMBL:AAEX03006759 Ensembl:ENSCAFT00000020228 Uniprot:L7N0D8
Length = 403
Score = 132 (51.5 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 157
Score = 85 (35.0 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 163 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Score = 38 (18.4 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 64 IEQPMSPRPAPWQP 77
+ Q +PRPAP P
Sbjct: 205 VVQVSAPRPAPGAP 218
>UNIPROTKB|Q2TEA4 [details] [associations]
symbol:Lhx3 "LIM homeodomain 3 protein b isoform"
species:9913 "Bos taurus" [GO:0048839 "inner ear development"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0021521 "ventral spinal cord interneuron
specification" evidence=IEA] [GO:0021520 "spinal cord motor neuron
cell fate specification" evidence=IEA] [GO:0008045 "motor neuron
axon guidance" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0045944
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0021983 GO:GO:0048839
GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021520
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN GO:GO:0021526
EMBL:DAAA02032311 EMBL:AY923832 EMBL:AY923833 IPI:IPI00687531
IPI:IPI01028343 RefSeq:NP_001033709.1 UniGene:Bt.45155
Ensembl:ENSBTAT00000055580 GeneID:539213 KEGG:bta:539213
NextBio:20877851 Uniprot:Q2TEA4
Length = 403
Score = 132 (51.5 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
+GI +++V RA+D V+HLHCF C+ C L GD F M D + C+ YE + R+
Sbjct: 100 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 157
Score = 85 (35.0 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+KS +N + P +QL+ +TGL RV+Q
Sbjct: 163 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
>UNIPROTKB|J9P8Y1 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AAEX03006908 EMBL:AAEX03006909
Ensembl:ENSCAFT00000045524 Uniprot:J9P8Y1
Length = 353
Score = 120 (47.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
Score = 117 (46.2 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 249 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 293
Score = 61 (26.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ +L++H+ C C C L + + ++++ I+C+ Y
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY 152
Score = 49 (22.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 81 QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
Q R R +K + P PPS A R+PS E +H
Sbjct: 297 QNCRARHKKHTPQHPVPPS---GAPPSRLPSALPEDIH 331
Score = 35 (17.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 24 CISCGILLTKGDLFGMRDEMIYCR 47
C SCG+ + DL + + + + R
Sbjct: 99 CASCGLEILDRDLLKVNNLIWHVR 122
>UNIPROTKB|F1NLU0 [details] [associations]
symbol:F1NLU0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021799
"cerebral cortex radially oriented cell migration" evidence=IEA]
[GO:0021800 "cerebral cortex tangential migration" evidence=IEA]
[GO:0021853 "cerebral cortex GABAergic interneuron migration"
evidence=IEA] [GO:0021877 "forebrain neuron fate commitment"
evidence=IEA] [GO:0021884 "forebrain neuron development"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 OMA:PATDQVM
EMBL:AADN02026365 EMBL:AADN02026363 EMBL:AADN02026364
IPI:IPI00603083 Ensembl:ENSGALT00000002057 Uniprot:F1NLU0
Length = 354
Score = 120 (47.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 143 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 193
Score = 117 (46.2 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 225 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 269
>UNIPROTKB|E2RA99 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 CTD:26468 KO:K09375 OMA:PATDQVM
EMBL:AAEX03006908 EMBL:AAEX03006909 RefSeq:XP_548475.3
Ensembl:ENSCAFT00000032295 GeneID:491354 KEGG:cfa:491354
Uniprot:E2RA99
Length = 363
Score = 120 (47.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
Score = 117 (46.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 220 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 264
Score = 61 (26.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ +L++H+ C C C L + + ++++ I+C+ Y
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY 123
Score = 49 (22.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 81 QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
Q R R +K + P PPS A R+PS E +H
Sbjct: 268 QNCRARHKKHTPQHPVPPS---GAPPSRLPSALPEDIH 302
Score = 35 (17.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 24 CISCGILLTKGDLFGMRDEMIYCR 47
C SCG+ + DL + + + + R
Sbjct: 70 CASCGLEILDRDLLKVNNLIWHVR 93
>MGI|MGI:1306803 [details] [associations]
symbol:Lhx6 "LIM homeobox protein 6" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=IMP] [GO:0021800 "cerebral cortex
tangential migration" evidence=IMP] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=IMP] [GO:0021877
"forebrain neuron fate commitment" evidence=IGI] [GO:0021884
"forebrain neuron development" evidence=IGI] [GO:0021895 "cerebral
cortex neuron differentiation" evidence=IGI] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IMP]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1306803 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021884
GO:GO:0021877 GO:GO:0021853 GO:GO:0021800 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 GO:GO:0048469 GO:GO:0021799 CTD:26468
HOGENOM:HOG000038965 HOVERGEN:HBG006261 KO:K09375 OrthoDB:EOG4GTKD8
EMBL:AJ000337 EMBL:AB031040 EMBL:AB031039 EMBL:AL773525
EMBL:BC065077 IPI:IPI00457813 IPI:IPI00457814 RefSeq:NP_001076595.1
RefSeq:NP_001076596.1 RefSeq:NP_032526.2 UniGene:Mm.12881
ProteinModelPortal:Q9R1R0 SMR:Q9R1R0 STRING:Q9R1R0 PRIDE:Q9R1R0
Ensembl:ENSMUST00000112961 Ensembl:ENSMUST00000112963
Ensembl:ENSMUST00000112966 Ensembl:ENSMUST00000148852 GeneID:16874
KEGG:mmu:16874 InParanoid:Q6P1H2 NextBio:290850 Bgee:Q9R1R0
Genevestigator:Q9R1R0 Uniprot:Q9R1R0
Length = 363
Score = 120 (47.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
Score = 117 (46.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 220 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 264
Score = 65 (27.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ +L++H+ C C C L + + ++++ IYC+ Y
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY 123
Score = 47 (21.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 81 QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
Q R R +K + P PPS A R+PS + +H
Sbjct: 268 QNCRARHKKHTPQHPVPPS---GAPPTRLPSALSDDIH 302
>UNIPROTKB|Q9UPM6 [details] [associations]
symbol:LHX6 "LIM/homeobox protein Lhx6" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0021877 "forebrain
neuron fate commitment" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=ISS] [GO:0021800 "cerebral cortex
tangential migration" evidence=ISS] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=ISS] [GO:0048469 "cell
maturation" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 EMBL:CH471090
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877 GO:GO:0021853
GO:GO:0021800 eggNOG:NOG264882 GO:GO:0048469 GO:GO:0021799
EMBL:AB031041 EMBL:AB031042 EMBL:AK126982 EMBL:AK289827
EMBL:AK297175 EMBL:AK299709 EMBL:AK313808 EMBL:AL162424
EMBL:AL136570 EMBL:BC103936 EMBL:BC103937 IPI:IPI00294419
IPI:IPI00513787 IPI:IPI00852614 IPI:IPI00853518 PIR:T46907
RefSeq:NP_001229262.1 RefSeq:NP_001229263.1 RefSeq:NP_001229264.1
RefSeq:NP_055183.2 RefSeq:NP_954629.2 UniGene:Hs.103137
ProteinModelPortal:Q9UPM6 SMR:Q9UPM6 STRING:Q9UPM6 DMDM:90185239
PRIDE:Q9UPM6 DNASU:26468 Ensembl:ENST00000340587
Ensembl:ENST00000373754 Ensembl:ENST00000373755
Ensembl:ENST00000394319 Ensembl:ENST00000541397
Ensembl:ENST00000559895 GeneID:26468 KEGG:hsa:26468 UCSC:uc004blx.4
UCSC:uc004bly.4 UCSC:uc010mvw.3 CTD:26468 GeneCards:GC09M124964
HGNC:HGNC:21735 HPA:HPA047854 MIM:608215 neXtProt:NX_Q9UPM6
PharmGKB:PA134949308 HOGENOM:HOG000038965 HOVERGEN:HBG006261
InParanoid:Q9UPM6 KO:K09375 OMA:PATDQVM OrthoDB:EOG4GTKD8
PhylomeDB:Q9UPM6 GenomeRNAi:26468 NextBio:48705 ArrayExpress:Q9UPM6
Bgee:Q9UPM6 CleanEx:HS_LHX6 Genevestigator:Q9UPM6
GermOnline:ENSG00000106852 Uniprot:Q9UPM6
Length = 363
Score = 120 (47.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 138 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 188
Score = 117 (46.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 220 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 264
Score = 61 (26.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ +L++H+ C C C L + + ++++ I+C+ Y
Sbjct: 82 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY 123
Score = 47 (21.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 81 QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
Q R R +K + P PPS A R+PS + +H
Sbjct: 268 QNCRARHKKHTPQHPVPPS---GAPPSRLPSALSDDIH 302
>MGI|MGI:1096343 [details] [associations]
symbol:Lhx8 "LIM homeobox protein 8" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IMP] [GO:0021879 "forebrain neuron differentiation"
evidence=IMP] [GO:0021884 "forebrain neuron development"
evidence=IGI] [GO:0042475 "odontogenesis of dentin-containing
tooth" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1096343 GO:GO:0005634 GO:GO:0008585
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 EMBL:CH466532 GO:GO:0021884
eggNOG:NOG264882 GeneTree:ENSGT00700000104050 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 CTD:431707 OMA:MYWKSDQ
OrthoDB:EOG48WC27 EMBL:D49658 EMBL:AB007596 EMBL:AJ000338
EMBL:AK165733 EMBL:BC125281 EMBL:BC125283 EMBL:BC144768
IPI:IPI00132791 RefSeq:NP_034843.2 UniGene:Mm.15530
ProteinModelPortal:O35652 SMR:O35652 STRING:O35652
PhosphoSite:O35652 PRIDE:O35652 Ensembl:ENSMUST00000177846
GeneID:16875 KEGG:mmu:16875 InParanoid:Q3TMT2 NextBio:290860
Bgee:O35652 CleanEx:MM_LHX8 Genevestigator:O35652
GermOnline:ENSMUSG00000028201 Uniprot:O35652
Length = 367
Score = 122 (48.0 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 146 SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 241 NHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 291
Score = 113 (44.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H++ +
Sbjct: 164 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCM 214
Score = 65 (27.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ DL +H+ C +C C L + ++D+ I+C+ Y
Sbjct: 108 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 149
>UNIPROTKB|G3V6V6 [details] [associations]
symbol:Lhx8 "RCG29002" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0021884 "forebrain neuron development"
evidence=IEA] [GO:0042475 "odontogenesis of dentin-containing
tooth" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:1308749 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 EMBL:CH473952
OMA:MYWKSDQ Ensembl:ENSRNOT00000009370 Uniprot:G3V6V6
Length = 367
Score = 122 (48.0 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 146 SHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 241 NHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 291
Score = 113 (44.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR H++ +
Sbjct: 164 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCM 214
Score = 65 (27.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ DL +H+ C +C C L + ++D+ I+C+ Y
Sbjct: 108 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 149
>RGD|1306174 [details] [associations]
symbol:Lhx6 "LIM homeobox 6" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0021799 "cerebral
cortex radially oriented cell migration" evidence=ISO] [GO:0021800
"cerebral cortex tangential migration" evidence=ISO] [GO:0021853
"cerebral cortex GABAergic interneuron migration" evidence=ISO]
[GO:0021877 "forebrain neuron fate commitment" evidence=ISO]
[GO:0021884 "forebrain neuron development" evidence=ISO]
[GO:0021895 "cerebral cortex neuron differentiation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0048469 "cell maturation" evidence=ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:1306174 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
IPI:IPI00948544 Ensembl:ENSRNOT00000068564 UCSC:RGD:1306174
Uniprot:D4A2X8
Length = 389
Score = 120 (47.3 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 164 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 214
Score = 117 (46.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 246 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 290
Score = 65 (27.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ +L++H+ C C C L + + ++++ IYC+ Y
Sbjct: 108 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDY 149
Score = 48 (22.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 81 QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
Q R R +K + P PPS A R+PS+ + +H
Sbjct: 294 QNCRARHKKHTPQHPVPPS---GAPPSRLPSSLSDDIH 328
>UNIPROTKB|E1B8I6 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021877 "forebrain neuron fate
commitment" evidence=IEA] [GO:0021853 "cerebral cortex GABAergic
interneuron migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021799 "cerebral cortex
radially oriented cell migration" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0021884 GO:GO:0021877 GO:GO:0021853 GO:GO:0021800
GeneTree:ENSGT00700000104050 GO:GO:0048469 GO:GO:0021799 CTD:26468
KO:K09375 OMA:PATDQVM EMBL:DAAA02032024 EMBL:DAAA02032025
IPI:IPI00716181 RefSeq:NP_001179777.1 UniGene:Bt.32055
Ensembl:ENSBTAT00000007266 GeneID:541261 KEGG:bta:541261
NextBio:20879100 Uniprot:E1B8I6
Length = 392
Score = 120 (47.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 167 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 217
Score = 117 (46.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F + NPDA+ L++LA TGLS+RV+Q
Sbjct: 249 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 293
Score = 61 (26.5 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ +L++H+ C C C L + + ++++ I+C+ Y
Sbjct: 111 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY 152
Score = 49 (22.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 81 QKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEMLH 118
Q R R +K + P PPS A R+PS + +H
Sbjct: 297 QNCRARHKKHTPQHPVPPS---GAQPSRLPSALSDDIH 331
>ZFIN|ZDB-GENE-081105-153 [details] [associations]
symbol:lhx8b "LIM homeobox 8b" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-081105-153 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 EMBL:CR388090
IPI:IPI00635015 Ensembl:ENSDART00000061776 Uniprot:F1QST6
Length = 295
Score = 118 (46.6 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 142 SGVHSHQR-TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+G Q+ +KR RTSF QL+ M++ F + NPDA+ L+ LA++TGLS+RV+Q
Sbjct: 164 AGCEIKQKPSKRARTSFTADQLQVMQAQFVQDNNPDAQMLQSLAEQTGLSRRVIQ 218
Score = 116 (45.9 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
+ SS+ V RA+ V+HL CF+C SC L+ G+ F + E + CR HY + + A
Sbjct: 92 LHSSDWVHRAKGNVYHLACFSCFSCKRQLSTGEEFALVGEKLLCRIHYSSMLDK-LNRPA 150
Query: 63 EIEQPMSPRPAPWQPTTVQKGRPRKR 88
E + +SP A + K +P KR
Sbjct: 151 EKGKSVSPEKALAAGCEI-KQKPSKR 175
Score = 77 (32.2 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC 59
+++ D+ +H C +C C L++ +R+ I+C+ HY R + +C
Sbjct: 36 LLKVNDMCWHARCLSCSVCQTTLSEQTTCYVREREIFCKLHY-FRRFQTWC 85
>ZFIN|ZDB-GENE-060531-41 [details] [associations]
symbol:si:ch211-236k19.2 "si:ch211-236k19.2"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-060531-41
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:BX255921 IPI:IPI01006880
Ensembl:ENSDART00000073963 OMA:ANDWIRR Uniprot:F6P152
Length = 255
Score = 116 (45.9 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 150 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+KR RTSF Q++ M+++F ++NPDA L++LA TGLS+RV+Q
Sbjct: 149 SKRPRTSFTSEQIQIMQTHFIRDKNPDAATLQRLADTTGLSRRVIQ 194
Score = 114 (45.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEI 52
+S+++ + RA + ++HL CF C C L+ G+ FG+ + + CR HY+I
Sbjct: 70 VSANDWIRRAGNDIYHLACFACFFCKRQLSTGEEFGLMENQVLCRVHYDI 119
Score = 72 (30.4 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
V++ L +HL C C C + L + +R++ I+CR Y
Sbjct: 14 VLKVNGLTWHLRCLQCSVCAVSLGHQNSCFIRNKEIFCRTDY 55
>ZFIN|ZDB-GENE-050114-2 [details] [associations]
symbol:lmx1bb "LIM homeobox transcription factor 1,
beta b" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0030917
"midbrain-hindbrain boundary development" evidence=IGI] [GO:0042472
"inner ear morphogenesis" evidence=IMP] [GO:0021592 "fourth
ventricle development" evidence=IGI] [GO:0060117 "auditory receptor
cell development" evidence=IMP] [GO:0032474 "otolith morphogenesis"
evidence=IMP] [GO:0048752 "semicircular canal morphogenesis"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0002072 "optic cup morphogenesis involved in camera-type eye
development" evidence=IGI] [GO:0061386 "closure of optic fissure"
evidence=IGI] [GO:0060041 "retina development in camera-type eye"
evidence=IGI] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-050114-2 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0060041 GO:GO:0032474
GO:GO:0048752 GO:GO:0030917 GO:GO:0060117 GO:GO:0061386
GO:GO:0021592 HOVERGEN:HBG052335 KO:K09371 EMBL:AY894989
IPI:IPI00631669 RefSeq:NP_001020338.2 UniGene:Dr.108678
ProteinModelPortal:Q4VJ29 STRING:Q4VJ29 GeneID:554360
KEGG:dre:554360 CTD:554360 InParanoid:Q4VJ29 NextBio:20880753
Uniprot:Q4VJ29
Length = 375
Score = 130 (50.8 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA + V+HL+CF C C L KGD F ++D + C+ YE R +D GS
Sbjct: 99 IAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKDGQLLCKSDYE--REKDLLGS 155
Score = 89 (36.4 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
+G + G +R KR RT Q R K+ F ++ P K + LA +TGLS RV+
Sbjct: 179 SGGTGKGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 238
Query: 195 Q 195
Q
Sbjct: 239 Q 239
Score = 65 (27.9 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S +MR + +H C C C LT F R+ +YC+ Y+ L
Sbjct: 41 SDRFLMRVNESSWHEECLQCAVCQQPLTTSCYF--RERKLYCKYDYQQL 87
>UNIPROTKB|P53412 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0000988 eggNOG:NOG275246
GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 EMBL:L35570 IPI:IPI00651346 PIR:I50376
RefSeq:NP_001025506.1 UniGene:Gga.91 ProteinModelPortal:P53412
SMR:P53412 STRING:P53412 Ensembl:ENSGALT00000002663 GeneID:373940
KEGG:gga:373940 CTD:8022 InParanoid:P53412 OMA:PLCAGCN
NextBio:20813472 ArrayExpress:P53412 Uniprot:P53412
Length = 395
Score = 131 (51.2 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA+D V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 149
Score = 80 (33.2 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+K+ +N + P +QL+ +TGL RV+Q
Sbjct: 155 KRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
>UNIPROTKB|E1BBB7 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0021884 "forebrain neuron development" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0007611 Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:DAAA02008298
IPI:IPI00713787 Ensembl:ENSBTAT00000025544 Uniprot:E1BBB7
Length = 371
Score = 117 (46.2 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I S++ V RA+ V+HL CF C SC L+ G+ F + +E + CR HY+ +
Sbjct: 164 IHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCM 214
Score = 111 (44.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 146 SHQR-TKRMRTSFKHHQLR--TMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+H + KR RTSF QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 241 NHPKPAKRARTSFTADQLQKQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 293
Score = 65 (27.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ DL +H+ C +C C L + ++D+ I+C+ Y
Sbjct: 108 LLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDY 149
>UNIPROTKB|F1SLQ9 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021877 "forebrain neuron fate
commitment" evidence=IEA] [GO:0021853 "cerebral cortex GABAergic
interneuron migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021799 "cerebral cortex
radially oriented cell migration" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877 GO:GO:0021853
GO:GO:0021800 GeneTree:ENSGT00700000104050 GO:GO:0048469
GO:GO:0021799 OMA:PATDQVM EMBL:CU041257 Ensembl:ENSSSCT00000006081
Uniprot:F1SLQ9
Length = 362
Score = 120 (47.3 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 157 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 207
Score = 103 (41.3 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RTSF QL+ M++ F NPDA+ L Q A TGLS+RVLQ
Sbjct: 239 KRARTSFTAEQLQVMQAQFAQVNNPDAQTL-QKADMTGLSRRVLQ 282
Score = 61 (26.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
+++ +L++H+ C C C L + + ++++ I+C+ Y
Sbjct: 101 LLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY 142
>ZFIN|ZDB-GENE-980526-131 [details] [associations]
symbol:lhx3 "LIM homeobox 3" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-980526-131 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
eggNOG:NOG275246 KO:K09374 HOVERGEN:HBG006263 CTD:8022 EMBL:U34590
IPI:IPI00486105 RefSeq:NP_571283.1 UniGene:Dr.570
ProteinModelPortal:Q90421 SMR:Q90421 STRING:Q90421 GeneID:30455
KEGG:dre:30455 NextBio:20806850 Uniprot:Q90421
Length = 398
Score = 130 (50.8 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI +++V RA+D V+HLHCF CI C L GD + M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADS 152
Query: 61 SAE 63
+A+
Sbjct: 153 TAK 155
Score = 79 (32.9 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+K+ +N + P +QL+ +TGL RV+Q
Sbjct: 155 KRPRTTITAKQLETLKNAYNNSPKPARHVREQLSTETGLDMRVVQ 199
>ZFIN|ZDB-GENE-041014-332 [details] [associations]
symbol:lmx1a "LIM homeobox transcription factor 1,
alpha" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-041014-332 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
HOGENOM:HOG000231629 CTD:4009 HOVERGEN:HBG052335 EMBL:BX296562
IPI:IPI00496510 RefSeq:NP_001020669.1 UniGene:Dr.108111
Ensembl:ENSDART00000019059 GeneID:558036 KEGG:dre:558036
eggNOG:NOG302270 InParanoid:Q5RI65 OMA:RLYSMQD OrthoDB:EOG4P8FJW
NextBio:20882278 Uniprot:Q5RI65
Length = 366
Score = 123 (48.4 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 3 ISSSELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY 50
IS SELVMRA+ VFHL CF C CG L KGD +R + ++C H+
Sbjct: 92 ISPSELVMRAQGSAVFHLRCFCCCVCGCRLQKGDHCVLRGDGLFCATHF 140
Score = 95 (38.5 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
AG S+ V H+R KR RT Q R K+ F ++ P K + LA +TGLS RV+
Sbjct: 171 AGESNITGDVE-HKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 229
Query: 195 Q 195
Q
Sbjct: 230 Q 230
Score = 70 (29.7 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQP 67
++R +D ++H C C SC L K F +R++ +YC+ Y+ L G +EI P
Sbjct: 38 LLRVQDGLWHERCLHCASCREPL-KDTCF-LRNKTLYCKRDYQKLFVVRCQGCSEIISP 94
>UNIPROTKB|H9L2C7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0009887 "organ morphogenesis"
evidence=IEA] [GO:0021526 "medial motor column neuron
differentiation" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 EMBL:AADN02073379 EMBL:AADN02073380
Ensembl:ENSGALT00000035845 OMA:ERSWHSK Uniprot:H9L2C7
Length = 237
Score = 127 (49.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 70 GIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYETAKQND 126
Score = 75 (31.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S KR RT+ QL T+K+ + + P +QL+ +TGL RV+Q
Sbjct: 128 SEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 177
>UNIPROTKB|H9L043 [details] [associations]
symbol:H9L043 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02053375
Ensembl:ENSGALT00000021923 OMA:CECERRL Uniprot:H9L043
Length = 280
Score = 120 (47.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ SEL+MR + V+H+HCF C C L +GD F +++ + CR YE
Sbjct: 14 IAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSDYE 62
Score = 94 (38.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 136 GNSSPGSGVHS---HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 192
G S G G H+R+KR RT Q R K+ F ++ P K + LA +TGL+ R
Sbjct: 86 GGHSHGKGSEDSKDHKRSKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLTVR 145
Query: 193 VLQ 195
V+Q
Sbjct: 146 VVQ 148
>UNIPROTKB|P36200 [details] [associations]
symbol:lhx3 "LIM/homeobox protein Lhx3" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 KO:K09374 HOVERGEN:HBG006263
CTD:8022 EMBL:Z22702 EMBL:Z11589 PIR:S38821 RefSeq:NP_001081623.1
UniGene:Xl.32 ProteinModelPortal:P36200 SMR:P36200 GeneID:397959
KEGG:xla:397959 Xenbase:XB-GENE-865930 Uniprot:P36200
Length = 395
Score = 127 (49.8 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V RA++ V+HLHCF CI C L GD F M D + C+ YE + R+
Sbjct: 93 GIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE 149
Score = 80 (33.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ QL T+K+ +N + P +QL+ +TGL RV+Q
Sbjct: 155 KRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
>UNIPROTKB|F1S229 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:CU179728
Ensembl:ENSSSCT00000006937 Uniprot:F1S229
Length = 295
Score = 111 (44.1 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 14 IAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE 62
Score = 103 (41.3 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
AG +P G H+R KR RT Q R K+ F ++ P K + LA +TGLS RV+
Sbjct: 94 AGKGAPEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 152
Query: 195 Q 195
Q
Sbjct: 153 Q 153
>UNIPROTKB|I3L863 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IEA] [GO:0021953
"central nervous system neuron differentiation" evidence=IEA]
[GO:0021549 "cerebellum development" evidence=IEA] [GO:0021542
"dentate gyrus development" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0001558 "regulation of cell growth"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0001558 GO:GO:0046872 GO:GO:0071542
GO:GO:0043565 GO:GO:0008270 GO:GO:0045665 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GeneTree:ENSGT00700000104050 GO:GO:0021542
GO:GO:0021953 OMA:GNAGMEG EMBL:CU179728 Ensembl:ENSSSCT00000032564
Uniprot:I3L863
Length = 296
Score = 111 (44.1 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 14 IAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE 62
Score = 103 (41.3 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
AG +P G H+R KR RT Q R K+ F ++ P K + LA +TGLS RV+
Sbjct: 94 AGKGAPEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 152
Query: 195 Q 195
Q
Sbjct: 153 Q 153
>ZFIN|ZDB-GENE-060728-1 [details] [associations]
symbol:lhx4 "LIM homeobox 4" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-060728-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 KO:K09374 HOVERGEN:HBG006263 CTD:89884
OMA:LSFRDDQ EMBL:BX294388 EMBL:CR381643 EMBL:CT025732
IPI:IPI00616255 RefSeq:NP_001116445.1 UniGene:Dr.92005
Ensembl:ENSDART00000057644 GeneID:571943 KEGG:dre:571943
NextBio:20890768 Uniprot:B0S5S7
Length = 391
Score = 127 (49.8 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF C+ C L GD F M D + C+ YE + D
Sbjct: 98 GIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCKEDYETAKQND 154
Score = 78 (32.5 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S KR RT+ QL T+KS + + P +QL+ +TGL RV+Q
Sbjct: 156 SETGAKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSETGLDMRVVQ 205
>ZFIN|ZDB-GENE-050114-3 [details] [associations]
symbol:lmx1ba "LIM homeobox transcription factor 1,
beta a" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0030917
"midbrain-hindbrain boundary development" evidence=IGI] [GO:0030902
"hindbrain development" evidence=IMP] [GO:0021592 "fourth ventricle
development" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0061386 "closure of optic fissure" evidence=IGI]
[GO:0060041 "retina development in camera-type eye" evidence=IGI]
[GO:0002072 "optic cup morphogenesis involved in camera-type eye
development" evidence=IGI] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-050114-3
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0060041 GeneTree:ENSGT00700000104050 GO:GO:0030917
GO:GO:0061386 HOGENOM:HOG000231629 GO:GO:0021592 HOVERGEN:HBG052335
EMBL:BX511196 EMBL:CABZ01060115 EMBL:CABZ01060116 EMBL:CABZ01060117
EMBL:CABZ01060118 EMBL:CABZ01060119 EMBL:CABZ01084097
EMBL:CABZ01084098 EMBL:CABZ01084099 EMBL:CABZ01084100 EMBL:AY551078
IPI:IPI00616332 UniGene:Dr.94065 Ensembl:ENSDART00000126544
Uniprot:Q4L1M5
Length = 375
Score = 121 (47.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRD 57
IS +ELVMRA + V+HL CF C C L KGD F +++ + C+ YE R +D
Sbjct: 99 ISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTDYE--REKD 151
Score = 87 (35.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 135 AGNSSPGSGVHSH-QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
AG GS +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 176 AGGQGKGSDDSKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 235
Query: 194 LQ 195
+Q
Sbjct: 236 VQ 237
Score = 69 (29.3 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S ++R D +H C C C LLT RD +YC+ Y+ L
Sbjct: 41 SDRFLLRMNDSSWHEECLQCSVCQQLLTMSCY--SRDHKLYCKHDYQQL 87
>UNIPROTKB|F1MFM7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021526
CTD:89884 OMA:LSFRDDQ EMBL:DAAA02043487 EMBL:DAAA02043488
EMBL:DAAA02043489 EMBL:DAAA02043490 IPI:IPI00695061
RefSeq:NP_001179714.1 UniGene:Bt.60930 Ensembl:ENSBTAT00000005216
GeneID:540797 KEGG:bta:540797 NextBio:20878839 Uniprot:F1MFM7
Length = 390
Score = 127 (49.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
Score = 75 (31.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S KR RT+ QL T+K+ + + P +QL+ +TGL RV+Q
Sbjct: 153 SEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 202
>UNIPROTKB|Q969G2 [details] [associations]
symbol:LHX4 "LIM/homeobox protein Lhx4" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 EMBL:AL139141 Orphanet:226307
Orphanet:95496 eggNOG:NOG275246 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0 GO:GO:0021526 EMBL:AY053457
EMBL:AF179849 EMBL:AF405430 EMBL:AF405425 EMBL:AF405426
EMBL:AF405427 EMBL:AF405428 EMBL:AF405429 EMBL:BC011759
EMBL:AB055703 EMBL:AB037683 EMBL:AF282899 EMBL:AH011598
IPI:IPI00169275 RefSeq:NP_203129.1 UniGene:Hs.658487
ProteinModelPortal:Q969G2 SMR:Q969G2 IntAct:Q969G2 STRING:Q969G2
DMDM:209572644 PRIDE:Q969G2 DNASU:89884 Ensembl:ENST00000263726
GeneID:89884 KEGG:hsa:89884 UCSC:uc001goe.2 CTD:89884
GeneCards:GC01P180199 HGNC:HGNC:21734 MIM:262700 MIM:602146
neXtProt:NX_Q969G2 Orphanet:85442 PharmGKB:PA134962876
InParanoid:Q969G2 OMA:LSFRDDQ PhylomeDB:Q969G2 GenomeRNAi:89884
NextBio:76401 ArrayExpress:Q969G2 Bgee:Q969G2 CleanEx:HS_LHX4
Genevestigator:Q969G2 GermOnline:ENSG00000121454 Uniprot:Q969G2
Length = 390
Score = 127 (49.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
Score = 75 (31.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S KR RT+ QL T+K+ + + P +QL+ +TGL RV+Q
Sbjct: 153 SEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 202
>MGI|MGI:101776 [details] [associations]
symbol:Lhx4 "LIM homeobox protein 4" species:10090 "Mus
musculus" [GO:0001890 "placenta development" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IGI] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:101776 GO:GO:0005634 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 PDB:3MMK PDBsum:3MMK HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0
GO:GO:0021526 CTD:89884 OMA:LSFRDDQ EMBL:BC049834 EMBL:AF135415
EMBL:U89343 EMBL:S71659 IPI:IPI00134772 PIR:S46332
RefSeq:NP_034842.2 UniGene:Mm.103624 UniGene:Mm.351266
ProteinModelPortal:P53776 SMR:P53776 STRING:P53776 PRIDE:P53776
Ensembl:ENSMUST00000027740 GeneID:16872 KEGG:mmu:16872
UCSC:uc007dbn.2 InParanoid:P53776 NextBio:290842 Bgee:P53776
CleanEx:MM_LHX4 Genevestigator:P53776 GermOnline:ENSMUSG00000026468
Uniprot:P53776
Length = 390
Score = 127 (49.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 95 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 151
Score = 75 (31.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S KR RT+ QL T+K+ + + P +QL+ +TGL RV+Q
Sbjct: 153 SEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 202
>UNIPROTKB|F1PCI5 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 GeneTree:ENSGT00700000104177
GO:GO:0021526 OMA:LSFRDDQ EMBL:AAEX03005118 EMBL:AAEX03005119
Ensembl:ENSCAFT00000031328 Uniprot:F1PCI5
Length = 395
Score = 127 (49.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HLHCF CI C L GD F M D + C+ YE + D
Sbjct: 100 GIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 156
Score = 75 (31.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S KR RT+ QL T+K+ + + P +QL+ +TGL RV+Q
Sbjct: 158 SEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 207
>UNIPROTKB|F1N4F7 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035265 "organ growth" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0021954 "central nervous system
neuron development" evidence=IEA] [GO:0021587 "cerebellum
morphogenesis" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0002930
"trabecular meshwork development" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0001764 GO:GO:0046872 GO:GO:0008283 GO:GO:0008219
GO:GO:0071542 GO:GO:0043565 GO:GO:0008270 GO:GO:0030199
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901 GO:GO:0035265
GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GeneTree:ENSGT00700000104050 GO:GO:0021587 OMA:NRMEGMM
EMBL:DAAA02032139 IPI:IPI00694069 Ensembl:ENSBTAT00000038767
Uniprot:F1N4F7
Length = 294
Score = 113 (44.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 14 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 71
Query: 63 EIEQ 66
++
Sbjct: 72 SPDE 75
Score = 93 (37.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 136 GNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G+ S GSG +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 95 GSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 154
Query: 194 LQ 195
+Q
Sbjct: 155 VQ 156
>UNIPROTKB|F1RS26 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035265 "organ growth" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0021954 "central nervous system
neuron development" evidence=IEA] [GO:0021587 "cerebellum
morphogenesis" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0002930
"trabecular meshwork development" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0001764 GO:GO:0046872 GO:GO:0008283 GO:GO:0008219
GO:GO:0071542 GO:GO:0043565 GO:GO:0008270 GO:GO:0030199
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901 GO:GO:0035265
GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GeneTree:ENSGT00700000104050 GO:GO:0021587 OMA:NRMEGMM
EMBL:CU062602 Ensembl:ENSSSCT00000006164 Uniprot:F1RS26
Length = 294
Score = 113 (44.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 14 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 71
Query: 63 EIEQ 66
++
Sbjct: 72 SPDE 75
Score = 93 (37.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 136 GNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G+ S GSG +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 95 GSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 154
Query: 194 LQ 195
+Q
Sbjct: 155 VQ 156
>UNIPROTKB|H0YKY2 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0021520
"spinal cord motor neuron cell fate specification" evidence=IEA]
[GO:0021524 "visceral motor neuron differentiation" evidence=IEA]
[GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0046872 GO:GO:0008270
GO:GO:0045665 GO:GO:0005622 Gene3D:2.10.110.10 GO:GO:0031290
EMBL:AC027243 GO:GO:0021520 GO:GO:0021524 HGNC:HGNC:18524
Ensembl:ENST00000558437 Bgee:H0YKY2 Uniprot:H0YKY2
Length = 145
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCG 60
+G SSS+LVMRARD V+H+ CF C C L GD F +R+ + CR + +L R G
Sbjct: 69 VGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAG 128
Query: 61 SAEIEQPMSPRPAP 74
S P SP P P
Sbjct: 129 S-----PRSPGPLP 137
>FB|FBgn0036274 [details] [associations]
symbol:CG4328 species:7227 "Drosophila melanogaster"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0006911
"phagocytosis, engulfment" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0006911 EMBL:AE014296 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0048813
GeneTree:ENSGT00700000104050 EMBL:BT050501 RefSeq:NP_648567.2
UniGene:Dm.27132 SMR:Q9VTW3 IntAct:Q9VTW3 MINT:MINT-301655
EnsemblMetazoa:FBtr0301071 GeneID:39405 KEGG:dme:Dmel_CG4328
UCSC:CG4328-RA FlyBase:FBgn0036274 InParanoid:Q9VTW3 OMA:ETNKENC
OrthoDB:EOG4B8GVN GenomeRNAi:39405 NextBio:813480 Uniprot:Q9VTW3
Length = 544
Score = 163 (62.4 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 40/151 (26%), Positives = 65/151 (43%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE----ILRHRDY 58
I++ ELVMR + VFHL CF C+ CG LL KG+ + ++ ++CR YE +L+ D+
Sbjct: 266 IAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDF 325
Query: 59 CGSAEIEQPMSPRPAPWQPTTVQKGRPRKR-KLSVDSPTPPSEDINANVMRIPSTTLEML 117
G + R P +P T+ + R+ K S + P + N+ + +L ++
Sbjct: 326 YGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIV 385
Query: 118 HXXXXXXXXXXXXXXXXAGNSSPGSGVHSHQ 148
A P G Q
Sbjct: 386 QVWFQNQRAKVKKIQKKAKQEPPSKGASDSQ 416
Score = 78 (32.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT Q R K+ F ++ P K + LA+ TGLS R++Q
Sbjct: 342 KRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQ 386
Score = 77 (32.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC 59
+MR + FH C C +C + L R+ +YCR YE L R++C
Sbjct: 211 IMRVVENSFHEGCLKCTACSLHLVHSCY--AREGKLYCRVDYERLYIRNHC 259
>UNIPROTKB|J9NU69 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:NRMEGMM EMBL:AAEX03006872
EMBL:AAEX03006873 Ensembl:ENSCAFT00000044276 Uniprot:J9NU69
Length = 327
Score = 113 (44.8 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 54 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 111
Query: 63 EIEQ 66
++
Sbjct: 112 SPDE 115
Score = 93 (37.8 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 136 GNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G+ S GSG +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 135 GSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 194
Query: 194 LQ 195
+Q
Sbjct: 195 VQ 196
Score = 71 (30.1 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 10 MRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
MR + +H C C +C LT F RD +YC+ Y+ L
Sbjct: 1 MRVNESSWHEECLQCAACQQALTTSCYF--RDRKLYCKQDYQQL 42
>MGI|MGI:1100513 [details] [associations]
symbol:Lmx1b "LIM homeobox transcription factor 1 beta"
species:10090 "Mus musculus" [GO:0001764 "neuron migration"
evidence=IMP] [GO:0002930 "trabecular meshwork development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008219 "cell death" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0021587 "cerebellum morphogenesis"
evidence=IMP] [GO:0021954 "central nervous system neuron
development" evidence=IMP] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0030199 "collagen fibril organization"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=NAS] [GO:0030901 "midbrain development" evidence=IMP]
[GO:0035108 "limb morphogenesis" evidence=IMP] [GO:0035265 "organ
growth" evidence=IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 EMBL:AF078166
MGI:MGI:1100513 GO:GO:0005634 GO:GO:0001764 GO:GO:0046872
GO:GO:0008283 GO:GO:0008219 GO:GO:0071542 GO:GO:0043565
GO:GO:0008270 GO:GO:0030199 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0030326 GO:GO:0030901 GO:GO:0035265 EMBL:CH466542
GO:GO:0009953 GO:GO:0021954 GeneTree:ENSGT00700000104050
GO:GO:0021587 HOGENOM:HOG000231629 eggNOG:NOG243427
HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN CTD:4010
EMBL:AL929212 EMBL:BC119169 EMBL:BC125469 IPI:IPI00132794
RefSeq:NP_034855.2 UniGene:Mm.39825 ProteinModelPortal:O88609
SMR:O88609 STRING:O88609 PhosphoSite:O88609 PRIDE:O88609
Ensembl:ENSMUST00000041730 GeneID:16917 KEGG:mmu:16917
InParanoid:Q0VEN6 OMA:NRMEGMM NextBio:290964 Bgee:O88609
CleanEx:MM_LMX1B Genevestigator:O88609
GermOnline:ENSMUSG00000038765 GO:GO:0002930 Uniprot:O88609
Length = 372
Score = 113 (44.8 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 156
Query: 63 EIEQ 66
++
Sbjct: 157 SPDE 160
Score = 93 (37.8 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 136 GNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G+ S GSG +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 180 GSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 239
Query: 194 LQ 195
+Q
Sbjct: 240 VQ 241
Score = 76 (31.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S +MR + +H C C +C LT F RD +YC+ Y+ L
Sbjct: 41 SDRFLMRVNESSWHEECLQCAACQQALTTSCYF--RDRKLYCKQDYQQL 87
>UNIPROTKB|O60663 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001701 "in utero embryonic development" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030182 "neuron differentiation" evidence=ISS] [GO:0007275
"multicellular organismal development" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0001701
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0009953 HOGENOM:HOG000231629
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN
CTD:4010 EMBL:AF057135 EMBL:AF059575 EMBL:AF059572 EMBL:AF059573
EMBL:AF059574 EMBL:AL161908 EMBL:AL161731 EMBL:BC069601
EMBL:BC112120 EMBL:BC113491 IPI:IPI00030989 IPI:IPI00220363
RefSeq:NP_001167618.1 RefSeq:NP_002307.2 UniGene:Hs.129133
ProteinModelPortal:O60663 SMR:O60663 IntAct:O60663 STRING:O60663
PhosphoSite:O60663 PaxDb:O60663 PRIDE:O60663 DNASU:4010
Ensembl:ENST00000373474 Ensembl:ENST00000425646 GeneID:4010
KEGG:hsa:4010 UCSC:uc004bqj.3 GeneCards:GC09P129376 HGNC:HGNC:6654
MIM:161200 MIM:602575 neXtProt:NX_O60663 Orphanet:2614
PharmGKB:PA30417 InParanoid:O60663 PhylomeDB:O60663 GenomeRNAi:4010
NextBio:15732 ArrayExpress:O60663 Bgee:O60663 CleanEx:HS_LMX1B
Genevestigator:O60663 GermOnline:ENSG00000136944 Uniprot:O60663
Length = 379
Score = 113 (44.8 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 156
Query: 63 EIEQ 66
++
Sbjct: 157 SPDE 160
Score = 93 (37.8 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 136 GNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G+ S GSG +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 180 GSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 239
Query: 194 LQ 195
+Q
Sbjct: 240 VQ 241
Score = 76 (31.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S +MR + +H C C +C LT F RD +YC+ Y+ L
Sbjct: 41 SDRFLMRVNESSWHEECLQCAACQQALTTSCYF--RDRKLYCKQDYQQL 87
>FB|FBgn0026411 [details] [associations]
symbol:Lim1 species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0007480 "imaginal disc-derived leg morphogenesis"
evidence=IMP] [GO:0007479 "leg disc proximal/distal pattern
formation" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IGI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005525
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0046872
EMBL:AE014298 GO:GO:0043565 GO:GO:0008270 GO:GO:0003924
GO:GO:0006184 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007480 GO:GO:0007479 FlyBase:FBgn0260444
HSSP:P06601 GeneTree:ENSGT00700000104177 eggNOG:NOG257130 KO:K09372
EMBL:AF181631 EMBL:AB034690 RefSeq:NP_572505.1 UniGene:Dm.3025
SMR:Q9V472 IntAct:Q9V472 MINT:MINT-756444 STRING:Q9V472
EnsemblMetazoa:FBtr0071279 GeneID:31813 KEGG:dme:Dmel_CG11354
UCSC:CG11354-RA CTD:31813 FlyBase:FBgn0026411 InParanoid:Q9V472
OMA:GARKMRG OrthoDB:EOG48W9H7 GenomeRNAi:31813 NextBio:775444
Uniprot:Q9V472
Length = 505
Score = 160 (61.4 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 59/204 (28%), Positives = 80/204 (39%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYEILRHRDYCG 60
GI+ S+LV + RD VFHL+CFTC C L+ G+ L+ + D C+ Y +L CG
Sbjct: 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY-LLGKAPSCG 150
Query: 61 SAEIEQP-MSPRPAPWQPTTVQKGRPRKRKLSVDSPTPP--------SEDINANVMRIPS 111
+ M R L V P P + DI+ M S
Sbjct: 151 HNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDS 210
Query: 112 TTLEMLHXXXXXXXXXXXXXXXXAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNI 171
A N SP S +R R T+ K QL +K+ FN
Sbjct: 211 KNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPR--TTIKAKQLEVLKTAFNQ 268
Query: 172 NQNPDAKDLKQLAQKTGLSKRVLQ 195
P +QLA++TGL RV+Q
Sbjct: 269 TPKPTRHIREQLAKETGLPMRVIQ 292
>UNIPROTKB|B7ZLH2 [details] [associations]
symbol:LMX1B "LMX1B protein" species:9606 "Homo sapiens"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0002930 "trabecular meshwork development" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021587 "cerebellum morphogenesis"
evidence=IEA] [GO:0021954 "central nervous system neuron
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0030901 "midbrain development"
evidence=IEA] [GO:0035108 "limb morphogenesis" evidence=IEA]
[GO:0035265 "organ growth" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0001764 GO:GO:0046872 GO:GO:0008283
GO:GO:0008219 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0030199 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901
GO:GO:0035265 GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GO:GO:0021587 HOGENOM:HOG000231629 HOVERGEN:HBG052335 KO:K09371
CTD:4010 EMBL:AL161908 EMBL:AL161731 UniGene:Hs.129133 DNASU:4010
GeneID:4010 KEGG:hsa:4010 HGNC:HGNC:6654 PharmGKB:PA30417
GenomeRNAi:4010 NextBio:15732 EMBL:BC143801 IPI:IPI00956472
RefSeq:NP_001167617.1 SMR:B7ZLH2 STRING:B7ZLH2
Ensembl:ENST00000561065 Uniprot:B7ZLH2
Length = 383
Score = 113 (44.8 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 156
Query: 63 EIEQ 66
++
Sbjct: 157 SPDE 160
Score = 93 (37.8 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 136 GNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G+ S GSG +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 180 GSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 239
Query: 194 LQ 195
+Q
Sbjct: 240 VQ 241
Score = 76 (31.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S +MR + +H C C +C LT F RD +YC+ Y+ L
Sbjct: 41 SDRFLMRVNESSWHEECLQCAACQQALTTSCYF--RDRKLYCKQDYQQL 87
>UNIPROTKB|F8VYP0 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 KO:K09371 CTD:4010 EMBL:AL161908 EMBL:AL161731
IPI:IPI00220363 RefSeq:NP_002307.2 UniGene:Hs.129133 DNASU:4010
GeneID:4010 KEGG:hsa:4010 HGNC:HGNC:6654 GenomeRNAi:4010
NextBio:15732 ProteinModelPortal:F8VYP0 SMR:F8VYP0 PRIDE:F8VYP0
Ensembl:ENST00000526117 UCSC:uc004bqi.3 ArrayExpress:F8VYP0
Bgee:F8VYP0 Uniprot:F8VYP0
Length = 395
Score = 113 (44.8 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQ 66
++
Sbjct: 180 SPDE 183
Score = 93 (37.8 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 136 GNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G+ S GSG +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 203 GSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 262
Query: 194 LQ 195
+Q
Sbjct: 263 VQ 264
Score = 76 (31.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S +MR + +H C C +C LT F RD +YC+ Y+ L
Sbjct: 64 SDRFLMRVNESSWHEECLQCAACQQALTTSCYF--RDRKLYCKQDYQQL 110
>UNIPROTKB|F8W7W6 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0002930 "trabecular meshwork development" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021587 "cerebellum morphogenesis"
evidence=IEA] [GO:0021954 "central nervous system neuron
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0030901 "midbrain development"
evidence=IEA] [GO:0035108 "limb morphogenesis" evidence=IEA]
[GO:0035265 "organ growth" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0001764 GO:GO:0046872 GO:GO:0008283
GO:GO:0008219 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0030199 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901
GO:GO:0035265 GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GO:GO:0021587 KO:K09371 CTD:4010 EMBL:AL161908 EMBL:AL161731
UniGene:Hs.129133 DNASU:4010 GeneID:4010 KEGG:hsa:4010
HGNC:HGNC:6654 GenomeRNAi:4010 NextBio:15732 OMA:NRMEGMM
IPI:IPI00956472 RefSeq:NP_001167617.1 ProteinModelPortal:F8W7W6
SMR:F8W7W6 Ensembl:ENST00000355497 UCSC:uc011maa.2
ArrayExpress:F8W7W6 Bgee:F8W7W6 Uniprot:F8W7W6
Length = 406
Score = 113 (44.8 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 179
Query: 63 EIEQ 66
++
Sbjct: 180 SPDE 183
Score = 93 (37.8 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 136 GNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G+ S GSG +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 203 GSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 262
Query: 194 LQ 195
+Q
Sbjct: 263 VQ 264
Score = 76 (31.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S +MR + +H C C +C LT F RD +YC+ Y+ L
Sbjct: 64 SDRFLMRVNESSWHEECLQCAACQQALTTSCYF--RDRKLYCKQDYQQL 110
>MGI|MGI:1888519 [details] [associations]
symbol:Lmx1a "LIM homeobox transcription factor 1 alpha"
species:10090 "Mus musculus" [GO:0001558 "regulation of cell
growth" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0007420
"brain development" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0021542 "dentate gyrus development" evidence=IMP]
[GO:0021549 "cerebellum development" evidence=IMP] [GO:0021766
"hippocampus development" evidence=IMP] [GO:0021953 "central
nervous system neuron differentiation" evidence=IMP] [GO:0030182
"neuron differentiation" evidence=IMP] [GO:0030901 "midbrain
development" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1888519 GO:GO:0005634 GO:GO:0007411
GO:GO:0001558 GO:GO:0046872 GO:GO:0071542 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GO:GO:0010468 GeneTree:ENSGT00700000104050
GO:GO:0021542 HOGENOM:HOG000231629 GO:GO:0021953 CTD:4009
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OMA:GNAGMEG
OrthoDB:EOG4QFWDN EMBL:AF226662 IPI:IPI00123446 RefSeq:NP_387501.1
UniGene:Mm.330081 ProteinModelPortal:Q9JKU8 SMR:Q9JKU8
STRING:Q9JKU8 PhosphoSite:Q9JKU8 PRIDE:Q9JKU8
Ensembl:ENSMUST00000028003 Ensembl:ENSMUST00000111377 GeneID:110648
KEGG:mmu:110648 InParanoid:Q9JKU8 NextBio:364391 Bgee:Q9JKU8
CleanEx:MM_LMX1A Genevestigator:Q9JKU8
GermOnline:ENSMUSG00000026686 Uniprot:Q9JKU8
Length = 382
Score = 111 (44.1 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 101 IAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE 149
Score = 95 (38.5 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
AG + G H+R KR RT Q R K+ F ++ P K + LA +TGLS RV+
Sbjct: 181 AGKGASEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 239
Query: 195 Q 195
Q
Sbjct: 240 Q 240
Score = 79 (32.9 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ S ++R D +H C C SC L + RD+ +YC+ HYE L
Sbjct: 41 VISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFY--RDKKLYCKYHYEKL 89
>RGD|1304784 [details] [associations]
symbol:Lmx1a "LIM homeobox transcription factor 1 alpha"
species:10116 "Rattus norvegicus" [GO:0001558 "regulation of cell
growth" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA;ISO]
[GO:0007417 "central nervous system development" evidence=ISO]
[GO:0007420 "brain development" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0021542 "dentate gyrus development"
evidence=IEA;ISO] [GO:0021549 "cerebellum development"
evidence=IEA;ISO] [GO:0021766 "hippocampus development"
evidence=ISO] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA;ISO] [GO:0030182 "neuron
differentiation" evidence=ISO] [GO:0030901 "midbrain development"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 RGD:1304784
GO:GO:0005634 GO:GO:0007411 GO:GO:0007420 GO:GO:0001558
GO:GO:0046872 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021549 GO:GO:0030901
GeneTree:ENSGT00700000104050 GO:GO:0021542 GO:GO:0021953 CTD:4009
KO:K09371 OMA:GNAGMEG IPI:IPI00869778 RefSeq:NP_001099437.2
UniGene:Rn.137284 Ensembl:ENSRNOT00000006163 GeneID:289201
KEGG:rno:289201 NextBio:629386 ArrayExpress:F1LRJ8 Uniprot:F1LRJ8
Length = 382
Score = 111 (44.1 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 101 IAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE 149
Score = 95 (38.5 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
AG + G H+R KR RT Q R K+ F ++ P K + LA +TGLS RV+
Sbjct: 181 AGKGASEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 239
Query: 195 Q 195
Q
Sbjct: 240 Q 240
Score = 79 (32.9 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ S ++R D +H C C SC L + RD+ +YC+ HYE L
Sbjct: 41 VISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFY--RDKKLYCKYHYEKL 89
>UNIPROTKB|F1PDJ1 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 CTD:4009 KO:K09371 OMA:GNAGMEG
EMBL:AAEX03018391 EMBL:AAEX03018392 RefSeq:XP_851352.2
Ensembl:ENSCAFT00000021142 GeneID:609061 KEGG:cfa:609061
Uniprot:F1PDJ1
Length = 382
Score = 111 (44.1 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 101 IAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE 149
Score = 95 (38.5 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
AG + G H+R KR RT Q R K+ F ++ P K + LA +TGLS RV+
Sbjct: 181 AGKGAAEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 239
Query: 195 Q 195
Q
Sbjct: 240 Q 240
Score = 70 (29.7 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ S ++R D +H C C SC L + RD+ +YC+ YE L
Sbjct: 41 VISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFY--RDKKLYCKYDYEKL 89
>UNIPROTKB|Q8TE12 [details] [associations]
symbol:LMX1A "LIM homeobox transcription factor 1-alpha"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0001558 "regulation of cell growth" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IEA] [GO:0021542 "dentate
gyrus development" evidence=IEA] [GO:0021549 "cerebellum
development" evidence=IEA] [GO:0021953 "central nervous system
neuron differentiation" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] [GO:0045665 "negative regulation of
neuron differentiation" evidence=IEA] [GO:0071542 "dopaminergic
neuron differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007411 GO:GO:0001558
GO:GO:0046872 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 EMBL:CH471067 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GO:GO:0021542 HOGENOM:HOG000231629 GO:GO:0021953
EMBL:AY078398 EMBL:AY078391 EMBL:AY078392 EMBL:AY078393
EMBL:AY078394 EMBL:AY078395 EMBL:AY078396 EMBL:AY078397
EMBL:AK127724 EMBL:AL390730 EMBL:AL160058 EMBL:BC119743
EMBL:BC119744 IPI:IPI00152586 IPI:IPI00328299 RefSeq:NP_001167540.1
RefSeq:NP_796372.1 UniGene:Hs.667312 ProteinModelPortal:Q8TE12
SMR:Q8TE12 STRING:Q8TE12 PhosphoSite:Q8TE12 DMDM:27923801
PRIDE:Q8TE12 DNASU:4009 Ensembl:ENST00000294816
Ensembl:ENST00000342310 Ensembl:ENST00000367893 GeneID:4009
KEGG:hsa:4009 UCSC:uc001gcz.2 UCSC:uc021pdy.1 CTD:4009
GeneCards:GC01M165171 HGNC:HGNC:6653 HPA:HPA028051 HPA:HPA030088
MIM:600298 neXtProt:NX_Q8TE12 PharmGKB:PA30416 eggNOG:NOG243427
HOVERGEN:HBG052335 InParanoid:Q8TE12 KO:K09371 OMA:GNAGMEG
OrthoDB:EOG4QFWDN PhylomeDB:Q8TE12 GenomeRNAi:4009 NextBio:15724
ArrayExpress:Q8TE12 Bgee:Q8TE12 CleanEx:HS_LMX1A
Genevestigator:Q8TE12 GermOnline:ENSG00000162761 Uniprot:Q8TE12
Length = 382
Score = 111 (44.1 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 101 IAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE 149
Score = 95 (38.5 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
AG + G H+R KR RT Q R K+ F ++ P K + LA +TGLS RV+
Sbjct: 181 AGKGTAEEG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 239
Query: 195 Q 195
Q
Sbjct: 240 Q 240
Score = 65 (27.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
++R D +H C C SC L + RD+ +YC+ YE L
Sbjct: 47 LLRLNDSFWHEQCVQCASCKEPLETTCFY--RDKKLYCKYDYEKL 89
>UNIPROTKB|Q8UVR3 [details] [associations]
symbol:lmx1b.1 "LIM homeobox transcription factor 1-beta.1"
species:8355 "Xenopus laevis" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0039020 "pronephric nephron tubule development"
evidence=IMP] [GO:0072013 "glomus development" evidence=IEP;IMP]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0072013
GO:GO:0039020 HOVERGEN:HBG052335 KO:K09371 EMBL:AF414086
RefSeq:NP_001083902.1 UniGene:Xl.12464 HSSP:P50480
ProteinModelPortal:Q8UVR3 GeneID:399182 KEGG:xla:399182 CTD:399182
Xenbase:XB-GENE-494754 Uniprot:Q8UVR3
Length = 400
Score = 119 (46.9 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 31/96 (32%), Positives = 46/96 (47%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 122 IAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYE--KEKDLLSSG 179
Query: 63 EIEQPMSPRPAPWQPTTVQ-KGRPRKRKLSVDSPTP 97
+ S + + KGR + K S D P
Sbjct: 180 SPDDSDSVKSDDEEGDVKPGKGRVNQGKGSDDGKDP 215
Score = 83 (34.3 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+R KR RT Q R K+ F ++ P K + LA +TGLS RV+Q
Sbjct: 216 RRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 263
Score = 68 (29.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S +MR + +H C C C LT F RD ++C+ Y+ L
Sbjct: 64 SDRFLMRVNEASWHEECLQCTVCQQPLTTSCYF--RDRKLFCKQDYQQL 110
>UNIPROTKB|Q6PVU4 [details] [associations]
symbol:Q6PVU4 "Lim1" species:9986 "Oryctolagus cuniculus"
[GO:0001071 "nucleic acid binding transcription factor activity"
evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702 HSSP:P10037
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263
OrthoDB:EOG405S1F GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY575212 UniGene:Ocu.3134
ProteinModelPortal:Q6PVU4 Uniprot:Q6PVU4
Length = 348
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 11 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 60
Score = 87 (35.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 108 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 167
>FB|FBgn0003896 [details] [associations]
symbol:tup "tailup" species:7227 "Drosophila melanogaster"
[GO:0008293 "torso signaling pathway" evidence=IGI] [GO:0007362
"terminal region determination" evidence=IGI] [GO:0007390
"germ-band shortening" evidence=IMP] [GO:0008258 "head involution"
evidence=NAS] [GO:0046665 "amnioserosa maintenance" evidence=IMP]
[GO:0007411 "axon guidance" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IMP] [GO:0000977
"RNA polymerase II regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IPI] [GO:0007391 "dorsal
closure" evidence=IMP] [GO:0008407 "chaeta morphogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0070983 "dendrite
guidance" evidence=IMP] [GO:0035310 "notum cell fate specification"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0007507 "heart
development" evidence=IMP] [GO:0000980 "RNA polymerase II distal
enhancer sequence-specific DNA binding" evidence=IDA] [GO:0048542
"lymph gland development" evidence=IMP] [GO:0003705 "RNA polymerase
II distal enhancer sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0022416 "chaeta development"
evidence=IMP] [GO:0007521 "muscle cell fate determination"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007507 GO:GO:0046872
GO:GO:0007391 GO:GO:0008293 GO:GO:0008270 GO:GO:0045944
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0003705 GO:GO:0000980
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0043433 GO:GO:0048542
GO:GO:0035310 GO:GO:0008407 eggNOG:NOG264882 GO:GO:0007362
GO:GO:0070983 GO:GO:0008258 GO:GO:0007390 GO:GO:0007521 HSSP:P50480
GO:GO:0046665 EMBL:U89385 ProteinModelPortal:P92031 SMR:P92031
STRING:P92031 PRIDE:P92031 FlyBase:FBgn0003896 InParanoid:P92031
OrthoDB:EOG45DV52 ArrayExpress:P92031 Bgee:P92031 Uniprot:P92031
Length = 534
Score = 117 (46.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 4 SSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDE-MIYCRPHYEIL 53
S ++ VMRA+ +FH+ CF C +C L GD F +RD +YC+ +++L
Sbjct: 124 SKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDVL 174
Score = 89 (36.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S + R+RT QL T+++ +N N PDA +QL + T LS RV++
Sbjct: 237 SDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIR 286
Score = 65 (27.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 7 ELVMR-ARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL--RHRDYCGSA 62
+ ++R A DL +H C C C L + +RD YC+ Y L D CG++
Sbjct: 64 QYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNS 122
>UNIPROTKB|G3V877 [details] [associations]
symbol:Lmx1b "LIM homeobox transcription factor 1 beta"
species:10116 "Rattus norvegicus" [GO:0001764 "neuron migration"
evidence=IEA] [GO:0002930 "trabecular meshwork development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0021587 "cerebellum morphogenesis" evidence=IEA]
[GO:0021954 "central nervous system neuron development"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0030901 "midbrain development" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0035265 "organ
growth" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:620843 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:CH474001 OMA:NRMEGMM
UniGene:Rn.92364 Ensembl:ENSRNOT00000022953 Uniprot:G3V877
Length = 372
Score = 113 (44.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSA 62
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE--KEKDLLSSV 156
Query: 63 EIEQ 66
++
Sbjct: 157 SPDE 160
Score = 90 (36.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 136 GNSSPGSGVHSH--QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
G+ + GSG +R KR RT Q R K+ F ++ P K + LA +TGLS RV
Sbjct: 180 GSQNKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 239
Query: 194 LQ 195
+Q
Sbjct: 240 VQ 241
Score = 76 (31.8 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S +MR + +H C C +C LT F RD +YC+ Y+ L
Sbjct: 41 SDRFLMRVNESSWHEECLQCAACQQALTTSCYF--RDRKLYCKQDYQQL 87
>ZFIN|ZDB-GENE-980526-484 [details] [associations]
symbol:lhx5 "LIM homeobox 5" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IMP;IDA] [GO:0001654 "eye development" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-484 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0030900 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001654
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F EMBL:L42547
EMBL:BC098523 IPI:IPI00509409 RefSeq:NP_571293.1 UniGene:Dr.75068
ProteinModelPortal:P52889 SMR:P52889 STRING:P52889
Ensembl:ENSDART00000080693 GeneID:30465 KEGG:dre:30465 CTD:64211
InParanoid:P52889 OMA:SHQGQEM NextBio:20806859 Bgee:P52889
Uniprot:P52889
Length = 399
Score = 115 (45.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 70 GISPSDLVRRARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDY 119
Score = 87 (35.7 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 150 TKRM--RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|Q5ISK2 [details] [associations]
symbol:Q5ISK2 "LIM homeobox protein 1" species:9541 "Macaca
fascicularis" [GO:0001071 "nucleic acid binding transcription
factor activity" evidence=ISS] [GO:0001655 "urogenital system
development" evidence=ISS] [GO:0001657 "ureteric bud development"
evidence=ISS] [GO:0001702 "gastrulation with mouth forming second"
evidence=ISS] [GO:0001705 "ectoderm formation" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0001822 "kidney development"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007267 "cell-cell signaling" evidence=ISS] [GO:0007389
"pattern specification process" evidence=ISS] [GO:0008045 "motor
neuron axon guidance" evidence=ISS] [GO:0009653 "anatomical
structure morphogenesis" evidence=ISS] [GO:0009791 "post-embryonic
development" evidence=ISS] [GO:0009880 "embryonic pattern
specification" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0009952 "anterior/posterior
pattern specification" evidence=ISS] [GO:0009953 "dorsal/ventral
pattern formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY650378 ProteinModelPortal:Q5ISK2
Uniprot:Q5ISK2
Length = 403
Score = 115 (45.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 66 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 115
Score = 87 (35.7 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 163 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 222
>UNIPROTKB|A7Z015 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008045 "motor neuron axon guidance" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0060429 "epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0090009
"primitive streak formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0021527 "spinal cord association
neuron differentiation" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=ISS] [GO:0010842 "retina layer
formation" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0021937 "cerebellar
Purkinje cell-granule cell precursor cell signaling involved in
regulation of granule cell precursor cell proliferation"
evidence=ISS] [GO:0021871 "forebrain regionalization" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0010468
"regulation of gene expression" evidence=ISS] [GO:0009953
"dorsal/ventral pattern formation" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISS]
[GO:0009791 "post-embryonic development" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0007389
"pattern specification process" evidence=ISS] [GO:0007267
"cell-cell signaling" evidence=ISS] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:0001071
"nucleic acid binding transcription factor activity" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060067 "cervix development" evidence=ISS]
[GO:0001822 "kidney development" evidence=ISS] [GO:0001705
"ectoderm formation" evidence=ISS] [GO:0001702 "gastrulation with
mouth forming second" evidence=ISS] [GO:0001655 "urogenital system
development" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060065 "uterus
development" evidence=ISS] [GO:0048703 "embryonic viscerocranium
morphogenesis" evidence=ISS] [GO:0072284 "metanephric S-shaped body
morphogenesis" evidence=IEA] [GO:0072283 "metanephric renal vesicle
morphogenesis" evidence=IEA] [GO:0048793 "pronephros development"
evidence=IEA] [GO:0035852 "horizontal cell localization"
evidence=IEA] [GO:0035849 "nephric duct elongation" evidence=IEA]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA] [GO:0021537 "telencephalon development" evidence=IEA]
[GO:0021517 "ventral spinal cord development" evidence=IEA]
[GO:0001823 "mesonephros development" evidence=IEA] [GO:0001658
"branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001658 GO:GO:0001657
GO:GO:0021527 GO:GO:0021702 GO:GO:0060068 GO:GO:0021537
GO:GO:0001823 GO:GO:0090009 GO:GO:0060059 GO:GO:0048793
GO:GO:2000768 GO:GO:0048703 GO:GO:0060322 GO:GO:0001071
GO:GO:0021517 GO:GO:0001706 GO:GO:0032525 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072283 GO:GO:0035849 GO:GO:0035846 GO:GO:0035847
EMBL:DAAA02048434 EMBL:BC153212 IPI:IPI00711186
RefSeq:NP_001098917.1 RefSeq:XP_003583582.1 UniGene:Bt.104440
Ensembl:ENSBTAT00000047689 GeneID:616699 GeneID:786041
KEGG:bta:616699 KEGG:bta:786041 InParanoid:A7Z015 NextBio:20927654
Uniprot:A7Z015
Length = 406
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 87 (35.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 166 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|E2RMA8 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060429 "epithelium development"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0009880
"embryonic pattern specification" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:2000543
"positive regulation of gastrulation" evidence=ISS] [GO:0040019
"positive regulation of embryonic development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0090009
"primitive streak formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0021527 "spinal cord association
neuron differentiation" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=ISS] [GO:0021937 "cerebellar Purkinje cell-granule cell
precursor cell signaling involved in regulation of granule cell
precursor cell proliferation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021702 "cerebellar Purkinje
cell differentiation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0009791 "post-embryonic
development" evidence=ISS] [GO:0009653 "anatomical structure
morphogenesis" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0007267 "cell-cell signaling"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:0001071
"nucleic acid binding transcription factor activity" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060067 "cervix development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001702 "gastrulation with mouth forming second"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0072284 "metanephric S-shaped body morphogenesis" evidence=IEA]
[GO:0072283 "metanephric renal vesicle morphogenesis" evidence=IEA]
[GO:0048793 "pronephros development" evidence=IEA] [GO:0035852
"horizontal cell localization" evidence=IEA] [GO:0035849 "nephric
duct elongation" evidence=IEA] [GO:0032525 "somite rostral/caudal
axis specification" evidence=IEA] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021517 "ventral spinal cord
development" evidence=IEA] [GO:0001823 "mesonephros development"
evidence=IEA] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0008045 GO:GO:0006366 GO:GO:0009791 GO:GO:0090190
GO:GO:0010842 GO:GO:0009953 GO:GO:0040019 GO:GO:0009880
GO:GO:0001658 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543 GO:GO:0072049
GO:GO:0072050 GeneTree:ENSGT00700000104177 KO:K09372 GO:GO:0021937
GO:GO:0021871 GO:GO:0072178 GO:GO:0061205 GO:GO:2000744
GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852 GO:GO:0072283
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 EMBL:AAEX03006612
RefSeq:XP_003639347.1 ProteinModelPortal:E2RMA8 SMR:E2RMA8
Ensembl:ENSCAFT00000028326 GeneID:100856649 KEGG:cfa:100856649
NextBio:20895890 Uniprot:E2RMA8
Length = 406
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 87 (35.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 166 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|F2Z531 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=IEA] [GO:2000744 "positive regulation of anterior head
development" evidence=IEA] [GO:2000543 "positive regulation of
gastrulation" evidence=IEA] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:0090009 "primitive streak formation" evidence=IEA] [GO:0072284
"metanephric S-shaped body morphogenesis" evidence=IEA] [GO:0072283
"metanephric renal vesicle morphogenesis" evidence=IEA] [GO:0072049
"comma-shaped body morphogenesis" evidence=IEA] [GO:0061205
"paramesonephric duct development" evidence=IEA] [GO:0060322 "head
development" evidence=IEA] [GO:0060068 "vagina development"
evidence=IEA] [GO:0060067 "cervix development" evidence=IEA]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=IEA] [GO:0048793 "pronephros development" evidence=IEA]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043234 "protein complex"
evidence=IEA] [GO:0040019 "positive regulation of embryonic
development" evidence=IEA] [GO:0035852 "horizontal cell
localization" evidence=IEA] [GO:0035849 "nephric duct elongation"
evidence=IEA] [GO:0035847 "uterine epithelium development"
evidence=IEA] [GO:0035846 "oviduct epithelium development"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0021871 "forebrain regionalization" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0021537 "telencephalon development" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021517 "ventral spinal cord development" evidence=IEA]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0008045
"motor neuron axon guidance" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001823 "mesonephros development" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0001706 "endoderm formation"
evidence=IEA] [GO:0001705 "ectoderm formation" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0045892 GO:GO:0001764 GO:GO:0045893 GO:GO:0043234
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0006366 GO:GO:0009791 GO:GO:0090190 GO:GO:0009953
GO:GO:0040019 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0021517 GO:GO:0001706 GO:GO:0032525
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 KO:K09372 GO:GO:0021937 GO:GO:0021871
GO:GO:0061205 GO:GO:2000744 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072283 GO:GO:0035849 GO:GO:0035846 GO:GO:0035847
EMBL:CU929499 RefSeq:XP_003131754.1 UniGene:Ssc.22980
ProteinModelPortal:F2Z531 SMR:F2Z531 Ensembl:ENSSSCT00000019256
GeneID:100513681 KEGG:ssc:100513681 Uniprot:F2Z531
Length = 406
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 87 (35.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 166 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|P63008 [details] [associations]
symbol:Lhx1 "LIM/homeobox protein Lhx1" species:10036
"Mesocricetus auratus" [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001706 "endoderm formation" evidence=ISS]
[GO:0001764 "neuron migration" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0010468 "regulation of gene expression" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0021527
"spinal cord association neuron differentiation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISS]
[GO:0021871 "forebrain regionalization" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0048646 "anatomical
structure formation involved in morphogenesis" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060067 "cervix
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072050
"S-shaped body morphogenesis" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:X81407 PIR:I48186
ProteinModelPortal:P63008 SMR:P63008 Uniprot:P63008
Length = 406
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 87 (35.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 166 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|Q5IS44 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9598 "Pan
troglodytes" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372
OrthoDB:EOG405S1F GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY665284 RefSeq:NP_001029088.1
UniGene:Ptr.6553 ProteinModelPortal:Q5IS44 SMR:Q5IS44 GeneID:454600
KEGG:ptr:454600 InParanoid:Q5IS44 NextBio:20836212 Uniprot:Q5IS44
Length = 406
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 87 (35.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 166 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|Q5IS89 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:39432
"Saimiri boliviensis boliviensis" [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001706 "endoderm formation" evidence=ISS]
[GO:0001764 "neuron migration" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0010468 "regulation of gene expression" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0021527
"spinal cord association neuron differentiation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISS]
[GO:0021871 "forebrain regionalization" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0048646 "anatomical
structure formation involved in morphogenesis" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060067 "cervix
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072050
"S-shaped body morphogenesis" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY665239 RefSeq:XP_003929119.1
ProteinModelPortal:Q5IS89 SMR:Q5IS89 GeneID:101033157
Uniprot:Q5IS89
Length = 406
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 87 (35.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 166 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>MGI|MGI:99783 [details] [associations]
symbol:Lhx1 "LIM homeobox protein 1" species:10090 "Mus
musculus" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=IGI;IMP] [GO:0001655 "urogenital system
development" evidence=IMP] [GO:0001657 "ureteric bud development"
evidence=IMP] [GO:0001702 "gastrulation with mouth forming second"
evidence=IMP] [GO:0001705 "ectoderm formation" evidence=IGI]
[GO:0001706 "endoderm formation" evidence=IMP] [GO:0001764 "neuron
migration" evidence=IMP] [GO:0001822 "kidney development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0007267 "cell-cell
signaling" evidence=IGI] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007389 "pattern specification
process" evidence=IGI;IMP] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009653 "anatomical structure morphogenesis" evidence=IMP]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0009880
"embryonic pattern specification" evidence=IGI] [GO:0009948
"anterior/posterior axis specification" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IGI]
[GO:0010468 "regulation of gene expression" evidence=IMP]
[GO:0010842 "retina layer formation" evidence=IMP] [GO:0021527
"spinal cord association neuron differentiation" evidence=IGI]
[GO:0021549 "cerebellum development" evidence=IGI] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IGI]
[GO:0021871 "forebrain regionalization" evidence=IGI] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=IGI] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IMP] [GO:0035846 "oviduct epithelium
development" evidence=IMP] [GO:0035847 "uterine epithelium
development" evidence=IMP] [GO:0035849 "nephric duct elongation"
evidence=IMP] [GO:0035852 "horizontal cell localization"
evidence=IMP] [GO:0040019 "positive regulation of embryonic
development" evidence=IMP] [GO:0043234 "protein complex"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IGI;IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=IGI;IMP] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=IMP] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=IMP]
[GO:0060065 "uterus development" evidence=IMP] [GO:0060066 "oviduct
development" evidence=IMP] [GO:0060067 "cervix development"
evidence=IMP] [GO:0060068 "vagina development" evidence=IMP]
[GO:0060322 "head development" evidence=IGI] [GO:0060429
"epithelium development" evidence=IMP] [GO:0061205 "paramesonephric
duct development" evidence=IMP] [GO:0072001 "renal system
development" evidence=IGI] [GO:0072049 "comma-shaped body
morphogenesis" evidence=IMP] [GO:0072050 "S-shaped body
morphogenesis" evidence=IMP] [GO:0072077 "renal vesicle
morphogenesis" evidence=IMP] [GO:0072178 "nephric duct
morphogenesis" evidence=IMP] [GO:0090009 "primitive streak
formation" evidence=IMP] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=IMP]
[GO:2000543 "positive regulation of gastrulation" evidence=IMP]
[GO:2000744 "positive regulation of anterior head development"
evidence=IMP] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
MGI:MGI:99783 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0044344
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0006366 GO:GO:0009791 GO:GO:0090190 GO:GO:0009953
GO:GO:0040019 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0035502 GO:GO:0048793 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0021517
GO:GO:0001706 GO:GO:0032525 GO:GO:0001705 GO:GO:2000543
GO:GO:0072049 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0061205 GO:GO:2000744 OMA:PSEMNEG
GO:GO:0060067 GO:GO:0035852 GO:GO:0072177 GO:GO:0072278
GO:GO:0072283 GO:GO:0072284 GO:GO:0035849 GO:GO:0035846
GO:GO:0035847 EMBL:Z27410 EMBL:S68107 EMBL:AF039706 EMBL:AF039705
IPI:IPI00119516 PIR:I48637 RefSeq:NP_032524.1 UniGene:Mm.4965
ProteinModelPortal:P63006 SMR:P63006 STRING:P63006 PRIDE:P63006
Ensembl:ENSMUST00000018842 GeneID:16869 KEGG:mmu:16869
InParanoid:P63006 NextBio:290830 Bgee:P63006 CleanEx:MM_LHX1
Genevestigator:P63006 GermOnline:ENSMUSG00000018698 Uniprot:P63006
Length = 406
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 87 (35.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 166 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>RGD|71074 [details] [associations]
symbol:Lhx1 "LIM homeobox 1" species:10116 "Rattus norvegicus"
[GO:0001071 "nucleic acid binding transcription factor activity"
evidence=ISO;ISS] [GO:0001655 "urogenital system development"
evidence=ISO;ISS] [GO:0001657 "ureteric bud development"
evidence=ISO;ISS] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISO;ISS] [GO:0001705 "ectoderm formation"
evidence=ISO;ISS] [GO:0001706 "endoderm formation" evidence=ISO;ISS]
[GO:0001764 "neuron migration" evidence=ISO;ISS] [GO:0001822 "kidney
development" evidence=ISO;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0005622
"intracellular" evidence=ISO;ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007267 "cell-cell signaling"
evidence=ISO;ISS] [GO:0007389 "pattern specification process"
evidence=ISO;ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009653 "anatomical structure morphogenesis" evidence=ISO;ISS]
[GO:0009791 "post-embryonic development" evidence=ISO;ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISO;ISS]
[GO:0009948 "anterior/posterior axis specification"
evidence=ISO;ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISO;ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISO;ISS] [GO:0010468 "regulation of gene
expression" evidence=ISO;ISS] [GO:0010842 "retina layer formation"
evidence=ISO;ISS] [GO:0021517 "ventral spinal cord development"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISO;ISS] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021549 "cerebellum development"
evidence=ISO;ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISO;ISS] [GO:0021871 "forebrain
regionalization" evidence=ISO;ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation of
granule cell precursor cell proliferation" evidence=ISO;ISS]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA;ISO] [GO:0035502 "metanephric part of ureteric bud
development" evidence=IEP] [GO:0035846 "oviduct epithelium
development" evidence=ISO;ISS] [GO:0035847 "uterine epithelium
development" evidence=ISO;ISS] [GO:0035849 "nephric duct elongation"
evidence=IEA;ISO] [GO:0035852 "horizontal cell localization"
evidence=IEA;ISO] [GO:0040019 "positive regulation of embryonic
development" evidence=ISO;ISS] [GO:0043234 "protein complex"
evidence=ISO;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044344 "cellular response to fibroblast growth
factor stimulus" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0048646 "anatomical structure formation
involved in morphogenesis" evidence=ISO;ISS] [GO:0048703 "embryonic
viscerocranium morphogenesis" evidence=ISO;ISS] [GO:0048793
"pronephros development" evidence=IEA] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISO;ISS] [GO:0060065
"uterus development" evidence=ISO;ISS] [GO:0060066 "oviduct
development" evidence=ISO;ISS] [GO:0060067 "cervix development"
evidence=ISO;ISS] [GO:0060068 "vagina development" evidence=ISO;ISS]
[GO:0060322 "head development" evidence=ISO;ISS] [GO:0060429
"epithelium development" evidence=ISO;ISS] [GO:0061205
"paramesonephric duct development" evidence=ISO;ISS] [GO:0072001
"renal system development" evidence=ISO] [GO:0072049 "comma-shaped
body morphogenesis" evidence=ISO;ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISO;ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISO;ISS] [GO:0072164 "mesonephric tubule
development" evidence=IEP] [GO:0072177 "mesonephric duct
development" evidence=IEP] [GO:0072178 "nephric duct morphogenesis"
evidence=ISO;ISS] [GO:0072224 "metanephric glomerulus development"
evidence=IEP] [GO:0072278 "metanephric comma-shaped body
morphogenesis" evidence=IEP] [GO:0072283 "metanephric renal vesicle
morphogenesis" evidence=IEA] [GO:0072284 "metanephric S-shaped body
morphogenesis" evidence=IEP] [GO:0090009 "primitive streak
formation" evidence=ISO;ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISO;ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISO;ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISO;ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISO;ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:71074 GO:GO:0005634 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0044344 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0090009 GO:GO:0060059
GO:GO:0035502 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543
GeneTree:ENSGT00700000104177 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072177 GO:GO:0072278 GO:GO:0072283 GO:GO:0072284
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 EMBL:S71523
IPI:IPI00199573 RefSeq:NP_665887.3 UniGene:Rn.127825
ProteinModelPortal:P63007 SMR:P63007 STRING:P63007
PhosphoSite:P63007 PRIDE:P63007 Ensembl:ENSRNOT00000003799
GeneID:257634 KEGG:rno:257634 InParanoid:P63007 NextBio:624166
Genevestigator:P63007 GermOnline:ENSRNOG00000002812 Uniprot:P63007
Length = 406
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 87 (35.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 136 GNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
G S+ + + + RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 166 GGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>ZFIN|ZDB-GENE-980526-116 [details] [associations]
symbol:lhx1b "LIM homeobox 1b" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-116 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HSSP:P06601 GeneTree:ENSGT00700000104177
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263
EMBL:BX255908 EMBL:AF001299 EMBL:BC162280 EMBL:BC162303
IPI:IPI00505711 RefSeq:NP_571282.1 UniGene:Dr.277
Ensembl:ENSDART00000021159 GeneID:30454 KEGG:dre:30454 CTD:30454
InParanoid:O13106 OrthoDB:EOG49CQ7Z NextBio:20806849 Uniprot:O13106
Length = 402
Score = 116 (45.9 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIY-CRPHY 50
GIS S+LV +AR VFHL+CFTCI C L+ G+ + DE + C+ Y
Sbjct: 69 GISPSDLVRKARSKVFHLNCFTCIMCNKQLSTGEELYILDEYKFVCKEDY 118
Score = 85 (35.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 182 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 223
>UNIPROTKB|F1MC25 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IEA] [GO:0021953
"central nervous system neuron differentiation" evidence=IEA]
[GO:0021549 "cerebellum development" evidence=IEA] [GO:0021542
"dentate gyrus development" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0001558 "regulation of cell growth"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0001558 GO:GO:0046872 GO:GO:0071542
GO:GO:0043565 GO:GO:0008270 GO:GO:0045665 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GeneTree:ENSGT00700000104050 GO:GO:0021542
GO:GO:0021953 CTD:4009 KO:K09371 OMA:GNAGMEG EMBL:DAAA02006817
EMBL:DAAA02006818 EMBL:DAAA02006819 EMBL:DAAA02006820
EMBL:DAAA02006821 EMBL:DAAA02006822 IPI:IPI00701360
RefSeq:NP_001178254.1 UniGene:Bt.106456 Ensembl:ENSBTAT00000015947
GeneID:510296 KEGG:bta:510296 NextBio:20869365 Uniprot:F1MC25
Length = 382
Score = 111 (44.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I+ +E VMRA+ V+HL CF C C L KGD F +++ + C+ YE
Sbjct: 101 IAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE 149
Score = 91 (37.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
H+R KR RT Q R K+ F ++ P K + LA +TGLS RV+Q
Sbjct: 192 HKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240
Score = 70 (29.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+ S ++R D +H C C SC L + RD+ +YC+ YE L
Sbjct: 41 VISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFY--RDKKLYCKYDYEKL 89
>UNIPROTKB|P37137 [details] [associations]
symbol:lhx5 "LIM/homeobox protein Lhx5" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 KO:K09372 CTD:64211 EMBL:L42546 EMBL:BC084744
EMBL:Z11587 PIR:S23803 RefSeq:NP_001084038.1 UniGene:Xl.1047
ProteinModelPortal:P37137 SMR:P37137 GeneID:399270 KEGG:xla:399270
Xenbase:XB-GENE-865965 Uniprot:P37137
Length = 402
Score = 114 (45.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
+GIS S+LV +AR+ VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 LGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
Score = 87 (35.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 150 TKRM--RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFIATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|B7ZP59 [details] [associations]
symbol:lhx1 "Homeobox protein" species:8355 "Xenopus
laevis" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0090009 GO:GO:0060059 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0001706 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
HOVERGEN:HBG006263 KO:K09372 GO:GO:0021937 GO:GO:0021871
GO:GO:0072178 GO:GO:0061205 GO:GO:2000744 GO:GO:0072077
RefSeq:NP_001084128.1 UniGene:Xl.32655 GeneID:399323
KEGG:xla:399323 Xenbase:XB-GENE-856460 EMBL:BC169338 EMBL:BC169340
SMR:B7ZP59 Uniprot:B7ZP59
Length = 403
Score = 115 (45.5 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 85 (35.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 183 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 224
Score = 43 (20.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 66 QPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTP---PSED 101
Q +P P+ P++V G P ++D P P PS D
Sbjct: 303 QAQTPVDLPFVPSSVPAGTPLG---AMDHPIPGHHPSSD 338
>UNIPROTKB|P29674 [details] [associations]
symbol:lhx1 "LIM/homeobox protein Lhx1" species:8355
"Xenopus laevis" [GO:0003002 "regionalization" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0009798 "axis specification" evidence=IMP] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0030903 "notochord
development" evidence=IMP] [GO:0035565 "regulation of pronephros
size" evidence=IGI] [GO:0039003 "pronephric field specification"
evidence=IGI] [GO:0039020 "pronephric nephron tubule development"
evidence=IGI] [GO:0042074 "cell migration involved in gastrulation"
evidence=IMP] [GO:0043009 "chordate embryonic development"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0048793 "pronephros development" evidence=IGI;IMP] [GO:0072080
"nephron tubule development" evidence=IGI] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0022008 GO:GO:0009952 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0007517 GO:GO:0042074 GO:GO:0009798 GO:GO:0043009
GO:GO:0030903 GO:GO:0039020 GO:GO:0035565 CTD:3975
HOVERGEN:HBG006263 KO:K09372 EMBL:X63889 EMBL:AF013242 PIR:S23802
RefSeq:NP_001084128.1 UniGene:Xl.32655 ProteinModelPortal:P29674
SMR:P29674 GeneID:399323 KEGG:xla:399323 Xenbase:XB-GENE-856460
GO:GO:0039003 Uniprot:P29674
Length = 403
Score = 115 (45.5 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 85 (35.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 183 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 224
Score = 43 (20.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 66 QPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTP---PSED 101
Q +P P+ P++V G P ++D P P PS D
Sbjct: 303 QAQTPVDLPFVPSSVPAGTPLG---AMDHPIPGHHPSSD 338
>UNIPROTKB|F1NX79 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0072049
"comma-shaped body morphogenesis" evidence=IEA] [GO:0072283
"metanephric renal vesicle morphogenesis" evidence=IEA] [GO:0072284
"metanephric S-shaped body morphogenesis" evidence=IEA] [GO:0090009
"primitive streak formation" evidence=IEA] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:2000543 "positive regulation of gastrulation"
evidence=IEA] [GO:2000744 "positive regulation of anterior head
development" evidence=IEA] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0001705 "ectoderm formation" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0001823 "mesonephros development"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0021517 "ventral spinal cord development"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021871 "forebrain
regionalization" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA] [GO:0035846 "oviduct epithelium development"
evidence=IEA] [GO:0035847 "uterine epithelium development"
evidence=IEA] [GO:0035849 "nephric duct elongation" evidence=IEA]
[GO:0035852 "horizontal cell localization" evidence=IEA]
[GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0048703 "embryonic viscerocranium
morphogenesis" evidence=IEA] [GO:0048793 "pronephros development"
evidence=IEA] [GO:0060059 "embryonic retina morphogenesis in
camera-type eye" evidence=IEA] [GO:0060067 "cervix development"
evidence=IEA] [GO:0060068 "vagina development" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] [GO:0061205
"paramesonephric duct development" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0043234
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0006366
GO:GO:0090190 GO:GO:0040019 GO:GO:2000768 GO:GO:2000543
GeneTree:ENSGT00700000104177 IPI:IPI00581331 GO:GO:0021937
GO:GO:2000744 OMA:PSEMNEG EMBL:AADN02025742 EMBL:AADN02025743
EMBL:AADN02025744 Ensembl:ENSGALT00000008686 Uniprot:F1NX79
Length = 406
Score = 115 (45.5 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 85 (35.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 44 (20.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 64 IEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN 105
+ P P+P +PT G V P+PP I+ N
Sbjct: 347 LAHPAGDSPSP-EPTL--PGSLHSMSAEVFGPSPPFSSISVN 385
>UNIPROTKB|P53411 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0048703 "embryonic viscerocranium morphogenesis"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS;NAS] [GO:0090190
"positive regulation of branching involved in ureteric bud
morphogenesis" evidence=ISS] [GO:0001822 "kidney development"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0009653 "anatomical structure morphogenesis" evidence=ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISS]
[GO:0009948 "anterior/posterior axis specification" evidence=ISS]
[GO:0009952 "anterior/posterior pattern specification"
evidence=ISS] [GO:0009953 "dorsal/ventral pattern formation"
evidence=ISS] [GO:0021549 "cerebellum development" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0021871 "forebrain regionalization" evidence=ISS]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0072049 "comma-shaped body morphogenesis" evidence=ISS]
[GO:0072050 "S-shaped body morphogenesis" evidence=ISS] [GO:0072077
"renal vesicle morphogenesis" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0048646
"anatomical structure formation involved in morphogenesis"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0021517 "ventral spinal cord development"
evidence=IEP] [GO:0001764 "neuron migration" evidence=ISS]
[GO:0090009 "primitive streak formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0060429 "epithelium
development" evidence=ISS] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IEP] [GO:0008045 "motor neuron axon
guidance" evidence=IDA] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:2000543 "positive
regulation of gastrulation" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0010468 "regulation
of gene expression" evidence=ISS] [GO:0021527 "spinal cord
association neuron differentiation" evidence=ISS] [GO:0072179
"nephric duct formation" evidence=NAS] [GO:2001141 "regulation of
RNA biosynthetic process" evidence=NAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0021522 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 EMBL:L35569
IPI:IPI00581331 PIR:I50375 RefSeq:NP_990744.1 UniGene:Gga.789
ProteinModelPortal:P53411 SMR:P53411 STRING:P53411 GeneID:396381
KEGG:gga:396381 CTD:3975 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 InParanoid:P53411 KO:K09372 OrthoDB:EOG405S1F
NextBio:20816423 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 Uniprot:P53411
Length = 406
Score = 115 (45.5 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 85 (35.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 44 (20.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 64 IEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINAN 105
+ P P+P +PT G V P+PP I+ N
Sbjct: 347 LAHPAGDSPSP-EPTL--PGSLHSMSAEVFGPSPPFSSISVN 385
>UNIPROTKB|P48742 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0021517 "ventral spinal cord
development" evidence=IEA] [GO:0021537 "telencephalon development"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IEA] [GO:0035502 "metanephric part of
ureteric bud development" evidence=IEA] [GO:0035849 "nephric duct
elongation" evidence=IEA] [GO:0035852 "horizontal cell
localization" evidence=IEA] [GO:0044344 "cellular response to
fibroblast growth factor stimulus" evidence=IEA] [GO:0048793
"pronephros development" evidence=IEA] [GO:0072177 "mesonephric
duct development" evidence=IEA] [GO:0072224 "metanephric glomerulus
development" evidence=IEA] [GO:0072278 "metanephric comma-shaped
body morphogenesis" evidence=IEA] [GO:0072283 "metanephric renal
vesicle morphogenesis" evidence=IEA] [GO:0072284 "metanephric
S-shaped body morphogenesis" evidence=IEA] [GO:0048703 "embryonic
viscerocranium morphogenesis" evidence=ISS] [GO:0060065 "uterus
development" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0001655 "urogenital system development" evidence=ISS]
[GO:0001657 "ureteric bud development" evidence=ISS] [GO:0001705
"ectoderm formation" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0007267 "cell-cell signaling" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009953
"dorsal/ventral pattern formation" evidence=ISS] [GO:0010468
"regulation of gene expression" evidence=ISS] [GO:0021549
"cerebellum development" evidence=ISS] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072049 "comma-shaped body morphogenesis"
evidence=ISS] [GO:0072050 "S-shaped body morphogenesis"
evidence=ISS] [GO:0072077 "renal vesicle morphogenesis"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0048646 "anatomical structure formation involved in
morphogenesis" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0021527 "spinal cord association neuron differentiation"
evidence=ISS] [GO:0001764 "neuron migration" evidence=ISS]
[GO:0090009 "primitive streak formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0060429 "epithelium development"
evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:2000543 "positive regulation of
gastrulation" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0007399
"nervous system development" evidence=TAS] [GO:0009887 "organ
morphogenesis" evidence=TAS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0044344 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001658 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0060068 GO:GO:0021537 GO:GO:0090009
GO:GO:0060059 GO:GO:0035502 GO:GO:0048793 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543 GO:GO:0072049
GO:GO:0072050 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG EMBL:U14755 EMBL:AC023315
EMBL:AC025882 EMBL:BC111936 EMBL:BC101674 IPI:IPI00550117
PIR:G01507 RefSeq:NP_005559.2 UniGene:Hs.443727
ProteinModelPortal:P48742 SMR:P48742 STRING:P48742
PhosphoSite:P48742 DMDM:60416412 PaxDb:P48742 PRIDE:P48742
DNASU:3975 Ensembl:ENST00000254457 GeneID:3975 KEGG:hsa:3975
UCSC:uc002hnh.2 GeneCards:GC17P035294 HGNC:HGNC:6593 HPA:CAB002770
MIM:601999 neXtProt:NX_P48742 PharmGKB:PA30364 InParanoid:P48742
PhylomeDB:P48742 GenomeRNAi:3975 NextBio:15580 ArrayExpress:P48742
Bgee:P48742 CleanEx:HS_LHX1 Genevestigator:P48742
GermOnline:ENSG00000132130 GO:GO:0060067 GO:GO:0035852
GO:GO:0072177 GO:GO:0072278 GO:GO:0072283 GO:GO:0072284
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 Uniprot:P48742
Length = 406
Score = 115 (45.5 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 85 (35.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|F1RKD0 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177
GO:GO:0021937 OMA:SHQGQEM EMBL:CU468670 Ensembl:ENSSSCT00000010817
Uniprot:F1RKD0
Length = 401
Score = 112 (44.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV +AR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 118
Score = 88 (36.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 150 TKRM--RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 177 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 224
>UNIPROTKB|E1BQX0 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=IEA] [GO:0021766 "hippocampus development" evidence=IEA]
[GO:0021846 "cell proliferation in forebrain" evidence=IEA]
[GO:0021879 "forebrain neuron differentiation" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177 GO:GO:0021937
OMA:SHQGQEM EMBL:AADN02050410 EMBL:AADN02050411 EMBL:AADN02050412
EMBL:AADN02050413 EMBL:AADN02050414 IPI:IPI00574747
Ensembl:ENSGALT00000013517 NextBio:20921461 Uniprot:E1BQX0
Length = 402
Score = 112 (44.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV +AR+ VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 70 GISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
Score = 88 (36.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 150 TKRM--RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 62 (26.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPM 68
++ D +H+ C C C LT+ F R+ +YC+ ++ R C A Q +
Sbjct: 17 LLNVLDRAWHIKCVQCCECKCNLTEKCFF--REGKLYCKKNF-FRRFGTKC--AGCSQGI 71
Query: 69 SP 70
SP
Sbjct: 72 SP 73
>UNIPROTKB|Q9H2C1 [details] [associations]
symbol:LHX5 "LIM/homeobox protein Lhx5" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA] [GO:0021702 "cerebellar Purkinje
cell differentiation" evidence=IEA] [GO:0021766 "hippocampus
development" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846
GO:GO:0021879 GO:GO:0021527 GO:GO:0021702 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 CTD:64211 OMA:SHQGQEM EMBL:AF291181 EMBL:BC109230
IPI:IPI00022760 RefSeq:NP_071758.1 UniGene:Hs.302029
ProteinModelPortal:Q9H2C1 SMR:Q9H2C1 STRING:Q9H2C1
PhosphoSite:Q9H2C1 DMDM:18202938 PRIDE:Q9H2C1
Ensembl:ENST00000261731 GeneID:64211 KEGG:hsa:64211 UCSC:uc001tvj.1
GeneCards:GC12M113900 HGNC:HGNC:14216 MIM:605992 neXtProt:NX_Q9H2C1
PharmGKB:PA30367 InParanoid:Q9H2C1 PhylomeDB:Q9H2C1
GenomeRNAi:64211 NextBio:66119 Bgee:Q9H2C1 CleanEx:HS_LHX5
Genevestigator:Q9H2C1 GermOnline:ENSG00000089116 Uniprot:Q9H2C1
Length = 402
Score = 112 (44.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV +AR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 88 (36.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 150 TKRM--RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 64 IEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPP 98
I P +P P P P T+ P ++ P+PP
Sbjct: 345 ISHPDTPSPEPGLPGTLH---PMPGEVFSGGPSPP 376
>UNIPROTKB|A6QQY6 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372
OrthoDB:EOG405S1F GO:GO:0021937 CTD:64211 OMA:SHQGQEM
EMBL:DAAA02045421 EMBL:BC150043 IPI:IPI00867450
RefSeq:NP_001095531.1 UniGene:Bt.88188 Ensembl:ENSBTAT00000004042
GeneID:520759 KEGG:bta:520759 InParanoid:A6QQY6 NextBio:20873176
Uniprot:A6QQY6
Length = 402
Score = 112 (44.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV +AR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 88 (36.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 150 TKRM--RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|E2RRP3 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177 KO:K09372
GO:GO:0021937 CTD:64211 OMA:SHQGQEM EMBL:AAEX03014690
RefSeq:XP_543409.3 ProteinModelPortal:E2RRP3
Ensembl:ENSCAFT00000014514 GeneID:486283 KEGG:cfa:486283
NextBio:20860085 Uniprot:E2RRP3
Length = 402
Score = 112 (44.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV +AR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 88 (36.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 150 TKRM--RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>MGI|MGI:107792 [details] [associations]
symbol:Lhx5 "LIM homeobox protein 5" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007267 "cell-cell signaling" evidence=IGI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IGI] [GO:0021549 "cerebellum
development" evidence=IGI] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IGI] [GO:0021766 "hippocampus
development" evidence=IMP] [GO:0021846 "cell proliferation in
forebrain" evidence=IMP] [GO:0021879 "forebrain neuron
differentiation" evidence=IMP] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IGI]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:107792 GO:GO:0005634 GO:GO:0021766
GO:GO:0045893 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879 GO:GO:0021527
GO:GO:0021702 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
CTD:64211 OMA:SHQGQEM EMBL:U61155 EMBL:BC057585 IPI:IPI00118119
RefSeq:NP_032525.1 UniGene:Mm.5151 ProteinModelPortal:P61375
SMR:P61375 STRING:P61375 PhosphoSite:P61375 PRIDE:P61375
Ensembl:ENSMUST00000031591 GeneID:16873 KEGG:mmu:16873
InParanoid:P61375 NextBio:290846 Bgee:P61375 CleanEx:MM_LHX5
Genevestigator:P61375 GermOnline:ENSMUSG00000029595 Uniprot:P61375
Length = 402
Score = 112 (44.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV +AR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 88 (36.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 150 TKRM--RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>RGD|71079 [details] [associations]
symbol:Lhx5 "LIM homeobox 5" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0007267
"cell-cell signaling" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA;ISO] [GO:0021549 "cerebellum
development" evidence=ISO] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA;ISO] [GO:0021766 "hippocampus
development" evidence=IEA;ISO] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA;ISO] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA;ISO] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation of
granule cell precursor cell proliferation" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71079 GO:GO:0005634 GO:GO:0021766 GO:GO:0045893
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0021846 GO:GO:0021879 GO:GO:0021527 GO:GO:0021702
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
CTD:64211 OMA:SHQGQEM EMBL:L35572 IPI:IPI00198471 PIR:I61573
RefSeq:NP_620605.1 UniGene:Rn.54653 ProteinModelPortal:P61376
SMR:P61376 STRING:P61376 Ensembl:ENSRNOT00000001883 GeneID:124451
KEGG:rno:124451 UCSC:RGD:71079 InParanoid:P61376 NextBio:620463
Genevestigator:P61376 GermOnline:ENSRNOG00000001392 Uniprot:P61376
Length = 402
Score = 112 (44.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS S+LV +AR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 88 (36.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 150 TKRM--RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
TKR RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
>UNIPROTKB|P53413 [details] [associations]
symbol:LMX1B "LIM/homeobox protein LMX-1.2" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0007275 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOGENOM:HOG000231629
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN
EMBL:L39880 EMBL:U41823 IPI:IPI00599399 RefSeq:NP_990689.1
UniGene:Gga.758 ProteinModelPortal:P53413 STRING:P53413
GeneID:396312 KEGG:gga:396312 CTD:4010 InParanoid:P53413
NextBio:20816360 Uniprot:P53413
Length = 377
Score = 114 (45.2 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYE--KEKDLLSS 155
Score = 83 (34.3 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+R KR RT Q R K+ F ++ P K + LA +TGLS RV+Q
Sbjct: 193 RRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240
Score = 73 (30.8 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S +MR + +H C C C LT F RD +YC+ Y+ L
Sbjct: 41 SDRFLMRVNESSWHEECLQCAVCQQALTTSCYF--RDRKLYCKQDYQQL 87
>UNIPROTKB|F1NDZ5 [details] [associations]
symbol:LMX1B "LIM/homeobox protein LMX-1.2" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0002930 "trabecular meshwork
development" evidence=IEA] [GO:0008219 "cell death" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0021587
"cerebellum morphogenesis" evidence=IEA] [GO:0021954 "central
nervous system neuron development" evidence=IEA] [GO:0030199
"collagen fibril organization" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] [GO:0035108 "limb morphogenesis"
evidence=IEA] [GO:0035265 "organ growth" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0008283 GO:GO:0008219 GO:GO:0043565
GO:GO:0008270 GO:GO:0030199 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0035265
GeneTree:ENSGT00700000104050 IPI:IPI00599399 OMA:NRMEGMM
EMBL:AADN02026296 EMBL:AADN02026297 EMBL:AADN02026298
EMBL:AADN02031658 Ensembl:ENSGALT00000001376 Uniprot:F1NDZ5
Length = 377
Score = 114 (45.2 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGS 61
I+ +E VMRA + V+HL CF C C L KGD F +++ + C+ YE + +D S
Sbjct: 99 IAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYE--KEKDLLSS 155
Score = 83 (34.3 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+R KR RT Q R K+ F ++ P K + LA +TGLS RV+Q
Sbjct: 193 RRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240
Score = 69 (29.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 9 VMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+MR + +H C C C LT F RD +YC+ Y+ L
Sbjct: 45 LMRVNESSWHEECLQCAVCQQALTTSCYF--RDRKLYCKQDYQQL 87
>ZFIN|ZDB-GENE-980526-347 [details] [associations]
symbol:lhx1a "LIM homeobox 1a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001071 "nucleic acid
binding transcription factor activity" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0043234
"protein complex" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0060059 "embryonic
retina morphogenesis in camera-type eye" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072178
"nephric duct morphogenesis" evidence=ISS] [GO:0090009 "primitive
streak formation" evidence=ISS] [GO:2000543 "positive regulation of
gastrulation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0072077
"renal vesicle morphogenesis" evidence=ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:0072050 "S-shaped body morphogenesis"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0021871 "forebrain regionalization"
evidence=ISS] [GO:0021937 "cerebellar Purkinje cell-granule cell
precursor cell signaling involved in regulation of granule cell
precursor cell proliferation" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-347 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0060322 GO:GO:0001071 GO:GO:0001706 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
GO:GO:0021871 GO:GO:0072178 GO:GO:0061205 GO:GO:2000744
GO:GO:0072077 EMBL:L37802 IPI:IPI00485723 RefSeq:NP_571291.1
UniGene:Dr.364 ProteinModelPortal:Q90476 SMR:Q90476 STRING:Q90476
Ensembl:ENSDART00000005641 GeneID:30463 KEGG:dre:30463 CTD:30463
InParanoid:Q90476 OMA:PSEMNEG NextBio:20806857 ArrayExpress:Q90476
Bgee:Q90476 Uniprot:Q90476
Length = 405
Score = 112 (44.5 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHY 50
GIS ++LV RAR VFHL+CFTC+ C L+ G+ L+ + + C+ Y
Sbjct: 69 GISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDY 118
Score = 85 (35.0 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RT+ K QL T+K+ F P +QLAQ+TGL+ RV+Q
Sbjct: 183 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 224
>UNIPROTKB|F1S681 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 GO:GO:0021526
OMA:LSFRDDQ EMBL:CU855640 EMBL:FP476046 Ensembl:ENSSSCT00000016925
Uniprot:F1S681
Length = 369
Score = 117 (46.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD 57
GI +++V +A+D V+HL CF CI C L GD F M D + C+ YE + D
Sbjct: 74 GIPPTQVVRKAQDFVYHLPCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND 130
Score = 75 (31.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 146 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
S KR RT+ QL T+K+ + + P +QL+ +TGL RV+Q
Sbjct: 132 SEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 181
>WB|WBGene00002989 [details] [associations]
symbol:lim-7 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0060323 "head morphogenesis"
evidence=IMP] [GO:0007588 "excretion" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0035262 "gonad
morphogenesis" evidence=IMP] [GO:0060465 "pharynx development"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0002119 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0040011 GO:GO:0007588
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0060465 GeneTree:ENSGT00700000104050 GO:GO:0035262
GO:GO:0060323 KO:K09370 HSSP:P50480 EMBL:U73946 EMBL:FO080336
PIR:T33049 RefSeq:NP_491668.1 UniGene:Cel.18382
ProteinModelPortal:G5EC36 SMR:G5EC36 IntAct:G5EC36
EnsemblMetazoa:C04F1.3 GeneID:172236 KEGG:cel:CELE_C04F1.3
CTD:172236 WormBase:C04F1.3 OMA:DEWDEER NextBio:874619
Uniprot:G5EC36
Length = 452
Score = 101 (40.6 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 6 SELVMRARDL-VFHLHCFTCISCGILLTKGDLFGMRDEMIYCR 47
++LVMRA VFHL+CF C++C L G+ F +++ +YCR
Sbjct: 128 TDLVMRAGPQNVFHLNCFACVACEKRLQTGEEFQIKNNSLYCR 170
Score = 93 (37.8 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 138 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
SS G Q T R+RT +QL+ ++ ++IN PDA ++L + TGLS RV++
Sbjct: 254 SSCGKKKKDKQAT-RVRTVLNENQLKILRDCYSINSRPDATLKERLVEMTGLSARVIR 310
Score = 65 (27.9 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 14 DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+L FH C C+ C L + +++ YCR Y L
Sbjct: 74 NLEFHAQCLKCVQCSRPLDENQTAFVKNGQTYCRDDYRRL 113
>FB|FBgn0052105 [details] [associations]
symbol:CG32105 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 EMBL:AE014296 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
eggNOG:NOG243427 HSSP:P50480 EMBL:BT003467 RefSeq:NP_729801.1
UniGene:Dm.15353 SMR:Q9VTW5 IntAct:Q9VTW5 MINT:MINT-307196
EnsemblMetazoa:FBtr0075953 GeneID:39406 KEGG:dme:Dmel_CG32105
UCSC:CG32105-RB FlyBase:FBgn0052105 InParanoid:Q9VTW5 OMA:CCHAILP
OrthoDB:EOG4BCC40 GenomeRNAi:39406 NextBio:813485 Uniprot:Q9VTW5
Length = 640
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 37/109 (33%), Positives = 53/109 (48%)
Query: 3 ISSSELVMRA-RDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPH------YEILRH 55
I ELVMR + VFHL CF C +C + L KG+ F +RD ++C H +
Sbjct: 341 ILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAA 400
Query: 56 RDYCGSAEIEQ-----PMSPRPAPWQPTTVQKGRPRKR-KLSVD-SPTP 97
+CG +++ P R P +P T+ + RK+ K S D SP P
Sbjct: 401 AQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKP 449
>UNIPROTKB|H0YMA3 [details] [associations]
symbol:LHX6 "LIM/homeobox protein Lhx6" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=IEA] [GO:0021877
"forebrain neuron fate commitment" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877
GO:GO:0021853 GO:GO:0021800 GO:GO:0048469 GO:GO:0021799
EMBL:AL162424 HGNC:HGNC:21735 Ensembl:ENST00000558672 Bgee:H0YMA3
Uniprot:H0YMA3
Length = 73
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
I +S+ V RAR +HL CF C SC L+ G+ FG+ +E + CR HY+ +
Sbjct: 18 IYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTM 68
>ZFIN|ZDB-GENE-040624-1 [details] [associations]
symbol:isl1l "islet1, like" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-040624-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOVERGEN:HBG004671
HOGENOM:HOG000236304 eggNOG:NOG295777 EMBL:AY423019 IPI:IPI00495237
RefSeq:NP_001002043.1 UniGene:Dr.156646 ProteinModelPortal:Q6TEN0
SMR:Q6TEN0 GeneID:415131 KEGG:dre:415131 CTD:415131
NextBio:20818810 Uniprot:Q6TEN0
Length = 323
Score = 95 (38.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 5 SSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
S E VMR++ ++H+ CF C C L GD + ++D + C H+ L
Sbjct: 90 SKEFVMRSQVNIYHVQCFRCEGCNRPLLSGDEYVLQDGQLLCTDHHNKL 138
Score = 83 (34.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
+R R+RT QL +++ + N PDA +QL + TGLS RV++
Sbjct: 170 ERATRVRTVLSETQLCMLQTCYTANPRPDALMKEQLVEMTGLSPRVIR 217
Score = 72 (30.4 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 8 LVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
+V + DL +H C C C L + +RD +CR HY L
Sbjct: 31 IVRVSPDLEWHARCLKCAECHQFLDESCTCFIRDGKTFCREHYSRL 76
>RGD|621166 [details] [associations]
symbol:Lmo1 "LIM domain only 1" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 RGD:621166
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:2.10.110.10 eggNOG:NOG316748 HOGENOM:HOG000232175
HOVERGEN:HBG054231 OrthoDB:EOG405S2K EMBL:AF353304 IPI:IPI00197708
UniGene:Rn.25503 ProteinModelPortal:Q99MB5 SMR:Q99MB5 STRING:Q99MB5
UCSC:RGD:621166 InParanoid:Q99MB5 Genevestigator:Q99MB5
GermOnline:ENSRNOG00000008041 Uniprot:Q99MB5
Length = 145
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 84 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
>UNIPROTKB|Q99MB5 [details] [associations]
symbol:Lmo3 "LIM domain only protein 3" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:621166 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 eggNOG:NOG316748
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:AF353304 IPI:IPI00197708 UniGene:Rn.25503
ProteinModelPortal:Q99MB5 SMR:Q99MB5 STRING:Q99MB5 UCSC:RGD:621166
InParanoid:Q99MB5 Genevestigator:Q99MB5
GermOnline:ENSRNOG00000008041 Uniprot:Q99MB5
Length = 145
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 84 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
>WB|WBGene00003000 [details] [associations]
symbol:lin-11 species:6239 "Caenorhabditis elegans"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0001708 "cell
fate specification" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0045595 "regulation of cell differentiation"
evidence=IMP] [GO:0030334 "regulation of cell migration"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0001708 GO:GO:0018991
GO:GO:0040010 GO:GO:0045595 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0030334 Gene3D:2.10.110.10 GO:GO:0007413 GO:GO:0040026
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
KO:K09372 EMBL:Z80221 EMBL:X54355 PIR:T27509 RefSeq:NP_492696.1
ProteinModelPortal:P20154 SMR:P20154 STRING:P20154
EnsemblMetazoa:ZC247.3 GeneID:172893 KEGG:cel:CELE_ZC247.3
UCSC:ZC247.3 CTD:172893 WormBase:ZC247.3 InParanoid:P20154
OMA:NDQQFYP NextBio:877423 Uniprot:P20154
Length = 405
Score = 99 (39.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGD-LFGMRDEMIYCRPHYE 51
+ +LV RARD VFH+ CF C C LL GD L+ M C+ ++
Sbjct: 134 LEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQ 183
Score = 79 (32.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RT+ K QL T+K+ F P +QLA +TGL+ RV+Q
Sbjct: 245 RTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQ 286
>UNIPROTKB|F1NBH5 [details] [associations]
symbol:LOC100858792 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0045944 GO:GO:0000122 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:GSFETQV EMBL:AADN02030560
IPI:IPI00812377 Ensembl:ENSGALT00000009595 Uniprot:F1NBH5
Length = 156
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 95 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYE 143
>UNIPROTKB|Q0P5B3 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:BC120273 IPI:IPI00699115 RefSeq:NP_001069363.1
ProteinModelPortal:Q0P5B3 SMR:Q0P5B3 STRING:Q0P5B3
Ensembl:ENSBTAT00000045558 GeneID:527152 KEGG:bta:527152 CTD:4004
eggNOG:NOG288849 InParanoid:Q0P5B3 OMA:GSFETQV NextBio:20874528
Uniprot:Q0P5B3
Length = 156
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 95 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYE 143
>UNIPROTKB|E2RLZ2 [details] [associations]
symbol:LMO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0000122 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
CTD:4004 OMA:GSFETQV EMBL:AAEX03012888 RefSeq:XP_851199.1
ProteinModelPortal:E2RLZ2 Ensembl:ENSCAFT00000011097 GeneID:610473
KEGG:cfa:610473 Uniprot:E2RLZ2
Length = 156
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 95 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYE 143
>UNIPROTKB|E9PK83 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 EMBL:AC091013 HGNC:HGNC:6641 ChiTaRS:LMO1
IPI:IPI00979256 ProteinModelPortal:E9PK83 SMR:E9PK83
Ensembl:ENST00000534484 ArrayExpress:E9PK83 Bgee:E9PK83
Uniprot:E9PK83
Length = 145
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 84 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYE 132
>UNIPROTKB|E9PSF5 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 CTD:4004
EMBL:AC091013 UniGene:Hs.654426 GeneID:4004 KEGG:hsa:4004
HGNC:HGNC:6641 ChiTaRS:LMO1 IPI:IPI00877062 RefSeq:NP_001257357.1
ProteinModelPortal:E9PSF5 SMR:E9PSF5 Ensembl:ENST00000428101
UCSC:uc001mgh.1 ArrayExpress:E9PSF5 Bgee:E9PSF5 Uniprot:E9PSF5
Length = 155
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 94 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYE 142
>UNIPROTKB|P25800 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 HOGENOM:HOG000232175 HOVERGEN:HBG054231
OrthoDB:EOG405S2K CTD:4004 eggNOG:NOG288849 OMA:GSFETQV EMBL:M26682
EMBL:AJ277662 EMBL:AC091013 EMBL:BC069673 EMBL:BC069752
EMBL:BC069793 EMBL:BC096056 EMBL:BC096057 IPI:IPI00396316
PIR:A32795 RefSeq:NP_002306.1 UniGene:Hs.654426
ProteinModelPortal:P25800 SMR:P25800 STRING:P25800
PhosphoSite:P25800 DMDM:132532 PRIDE:P25800 DNASU:4004
Ensembl:ENST00000335790 GeneID:4004 KEGG:hsa:4004 UCSC:uc001mgg.1
GeneCards:GC11M008202 HGNC:HGNC:6641 MIM:186921 neXtProt:NX_P25800
PharmGKB:PA30407 InParanoid:P25800 ChiTaRS:LMO1 GenomeRNAi:4004
NextBio:15708 PMAP-CutDB:P25800 ArrayExpress:P25800 Bgee:P25800
CleanEx:HS_LMO1 Genevestigator:P25800 GermOnline:ENSG00000166407
Uniprot:P25800
Length = 156
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 95 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYE 143
>UNIPROTKB|Q3B8H4 [details] [associations]
symbol:lmo1 "Rhombotin-1" species:8355 "Xenopus laevis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 HSSP:Q13642 HOVERGEN:HBG054231 CTD:4004
EMBL:BC106431 RefSeq:NP_001089735.1 UniGene:Xl.82232
ProteinModelPortal:Q3B8H4 SMR:Q3B8H4 GeneID:734798 KEGG:xla:734798
Uniprot:Q3B8H4
Length = 156
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 95 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYE 143
>MGI|MGI:102812 [details] [associations]
symbol:Lmo1 "LIM domain only 1" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;IGI] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 MGI:MGI:102812
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0000122 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K CTD:4004
eggNOG:NOG288849 OMA:GSFETQV EMBL:AJ296304 EMBL:BC053074
IPI:IPI00410856 RefSeq:NP_476514.1 UniGene:Mm.360145
ProteinModelPortal:Q924W9 SMR:Q924W9 STRING:Q924W9
PhosphoSite:Q924W9 PRIDE:Q924W9 Ensembl:ENSMUST00000036992
GeneID:109594 KEGG:mmu:109594 InParanoid:Q924W9 NextBio:362409
Bgee:Q924W9 CleanEx:MM_LMO1 Genevestigator:Q924W9
GermOnline:ENSMUSG00000036111 Uniprot:Q924W9
Length = 156
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 95 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQVDYE 143
>ZFIN|ZDB-GENE-021115-6 [details] [associations]
symbol:lmo1 "LIM domain only 1" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-021115-6 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 HSSP:P61969 HOGENOM:HOG000232175
HOVERGEN:HBG054231 OrthoDB:EOG405S2K CTD:4004 eggNOG:NOG288849
OMA:GSFETQV EMBL:AF398514 EMBL:BC092690 IPI:IPI00488481
RefSeq:NP_775326.1 UniGene:Dr.77277 ProteinModelPortal:Q8JFQ2
SMR:Q8JFQ2 STRING:Q8JFQ2 Ensembl:ENSDART00000044208 GeneID:280646
KEGG:dre:280646 InParanoid:Q8JFQ2 NextBio:20804856
ArrayExpress:Q8JFQ2 Bgee:Q8JFQ2 Uniprot:Q8JFQ2
Length = 155
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 94 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYE 142
>UNIPROTKB|A9ED79 [details] [associations]
symbol:LMO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670 HOVERGEN:HBG054231
CTD:4004 OMA:GSFETQV EMBL:FP340194 EMBL:AB304399
RefSeq:NP_001106526.1 SMR:A9ED79 Ensembl:ENSSSCT00000022371
GeneID:100127356 KEGG:ssc:100127356 Uniprot:A9ED79
Length = 156
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRARD V+HL CF C C GD F +++ MI C+ YE
Sbjct: 95 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQLDYE 143
>UNIPROTKB|F1NBH3 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:HTEIGIY EMBL:AADN02006566
EMBL:AADN02006567 EMBL:AADN02006568 IPI:IPI00590236
Ensembl:ENSGALT00000009596 Uniprot:F1NBH3
Length = 147
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 86 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 134
>UNIPROTKB|Q2KIA3 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:BC112712 IPI:IPI00722914 RefSeq:NP_001039802.1
UniGene:Bt.97510 ProteinModelPortal:Q2KIA3 SMR:Q2KIA3
Ensembl:ENSBTAT00000043044 GeneID:532870 KEGG:bta:532870 CTD:55885
eggNOG:NOG316748 HOGENOM:HOG000232175 HOVERGEN:HBG054231
InParanoid:Q2KIA3 OMA:HTEIGIY OrthoDB:EOG405S2K NextBio:20875832
Uniprot:Q2KIA3
Length = 145
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 84 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
>UNIPROTKB|E2RHK8 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 EMBL:AAEX03015233
RefSeq:XP_003433617.1 ProteinModelPortal:E2RHK8
Ensembl:ENSCAFT00000020038 GeneID:486662 KEGG:cfa:486662
Uniprot:E2RHK8
Length = 156
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 95 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 143
>UNIPROTKB|J9P4K0 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 EMBL:AAEX03015233
GeneID:486662 KEGG:cfa:486662 RefSeq:XP_866536.1
ProteinModelPortal:J9P4K0 Ensembl:ENSCAFT00000048736 Uniprot:J9P4K0
Length = 145
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 84 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
>UNIPROTKB|Q8TAP4 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 EMBL:CH471094 CTD:55885
eggNOG:NOG316748 HOGENOM:HOG000232175 HOVERGEN:HBG054231
OMA:HTEIGIY OrthoDB:EOG405S2K EMBL:AB044745 EMBL:AB044746
EMBL:AK095595 EMBL:AK294909 EMBL:AC007529 EMBL:AC007552
EMBL:BC026311 EMBL:BC050085 IPI:IPI00744307 RefSeq:NP_001001395.1
RefSeq:NP_001230538.1 RefSeq:NP_001230539.1 RefSeq:NP_001230540.1
RefSeq:NP_001230542.1 RefSeq:NP_061110.2 UniGene:Hs.504908
ProteinModelPortal:Q8TAP4 SMR:Q8TAP4 IntAct:Q8TAP4
MINT:MINT-2874669 STRING:Q8TAP4 PhosphoSite:Q8TAP4 DMDM:34098603
PRIDE:Q8TAP4 DNASU:55885 Ensembl:ENST00000261169
Ensembl:ENST00000320122 Ensembl:ENST00000354662
Ensembl:ENST00000441439 Ensembl:ENST00000447609
Ensembl:ENST00000534946 Ensembl:ENST00000535535
Ensembl:ENST00000537304 Ensembl:ENST00000540445
Ensembl:ENST00000540848 Ensembl:ENST00000541846 GeneID:55885
KEGG:hsa:55885 UCSC:uc001rdk.2 GeneCards:GC12M016701 HGNC:HGNC:6643
MIM:180386 neXtProt:NX_Q8TAP4 PharmGKB:PA30409 InParanoid:Q8TAP4
PhylomeDB:Q8TAP4 GenomeRNAi:55885 NextBio:61212 ArrayExpress:Q8TAP4
Bgee:Q8TAP4 CleanEx:HS_LMO3 Genevestigator:Q8TAP4
GermOnline:ENSG00000048540 Uniprot:Q8TAP4
Length = 145
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 84 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
>UNIPROTKB|A9ED84 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 HOVERGEN:HBG054231
OMA:HTEIGIY OrthoDB:EOG405S2K EMBL:CU915363 EMBL:AB304400
RefSeq:NP_001106155.1 UniGene:Ssc.8086 SMR:A9ED84
Ensembl:ENSSSCT00000000642 GeneID:100127154 KEGG:ssc:100127154
eggNOG:NOG315878 Uniprot:A9ED84
Length = 145
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 84 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
>MGI|MGI:102810 [details] [associations]
symbol:Lmo3 "LIM domain only 3" species:10090 "Mus musculus"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
MGI:MGI:102810 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
CTD:55885 eggNOG:NOG316748 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:AK034177 EMBL:BC057086 IPI:IPI00406211 RefSeq:NP_997105.1
UniGene:Mm.490545 ProteinModelPortal:Q8BZL8 SMR:Q8BZL8
STRING:Q8BZL8 PhosphoSite:Q8BZL8 PRIDE:Q8BZL8
Ensembl:ENSMUST00000161450 Ensembl:ENSMUST00000162772
Ensembl:ENSMUST00000163024 GeneID:109593 KEGG:mmu:109593
UCSC:uc009enl.1 InParanoid:Q8BZL8 NextBio:362405 Bgee:Q8BZL8
CleanEx:MM_LMO3 Genevestigator:Q8BZL8 GermOnline:ENSMUSG00000030226
Uniprot:Q8BZL8
Length = 145
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 84 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
>RGD|1561357 [details] [associations]
symbol:RGD1561357 "similar to LIM domain only 3" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:1561357 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 OMA:HTEIGIY IPI:IPI00480651
RefSeq:XP_003749911.1 ProteinModelPortal:F2Z3R1 SMR:F2Z3R1
Ensembl:ENSRNOT00000010623 GeneID:497798 KEGG:rno:497798 CTD:497798
Uniprot:F2Z3R1
Length = 145
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 84 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
>UNIPROTKB|J9NZN8 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 OMA:HTEIGIY
EMBL:AAEX03015233 GeneID:486662 KEGG:cfa:486662 RefSeq:XP_866550.2
Ensembl:ENSCAFT00000044444 Uniprot:J9NZN8
Length = 163
Score = 116 (45.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 102 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 150
>UNIPROTKB|B4DG90 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 CTD:55885
HOGENOM:HOG000232175 HOVERGEN:HBG054231 EMBL:AC007529 EMBL:AC007552
RefSeq:NP_001001395.1 UniGene:Hs.504908 DNASU:55885 GeneID:55885
KEGG:hsa:55885 HGNC:HGNC:6643 GenomeRNAi:55885 NextBio:61212
EMBL:AK294474 EMBL:AK316021 IPI:IPI00910185 RefSeq:NP_001230541.1
SMR:B4DG90 STRING:B4DG90 Ensembl:ENST00000541295 UCSC:uc010shy.2
Uniprot:B4DG90
Length = 163
Score = 116 (45.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA+D V+HL CF C C GD F +++ MI C+ YE
Sbjct: 102 IPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 150
>FB|FBgn0002023 [details] [associations]
symbol:Lim3 "Lim3" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0007399 "nervous system
development" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HSSP:P50480 FlyBase:FBgn0002023
EMBL:BT003469 ProteinModelPortal:Q86P58 SMR:Q86P58 IntAct:Q86P58
STRING:Q86P58 PRIDE:Q86P58 InParanoid:Q86P58 ArrayExpress:Q86P58
Bgee:Q86P58 Uniprot:Q86P58
Length = 523
Score = 128 (50.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/119 (31%), Positives = 59/119 (49%)
Query: 1 MGISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFG-MRDEMIYCRPHYEILRHRD-Y 58
MGI +++V RA+D V+HL CF C C L GD F M D + C+ YE + + Y
Sbjct: 189 MGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLY 248
Query: 59 C-GSAEIEQPMSPRPAPWQPTTVQKGRPRKRKLSVDSPTPPSEDINANVMRIPSTTLEM 116
GS + +QP + RP TT+ + K + ++ P+ + + + T L+M
Sbjct: 249 LDGSLDGDQP-NKRPR----TTITAKQLETLKTAYNNSPKPARHVREQLSQ--DTGLDM 300
>UNIPROTKB|Q9YH16 [details] [associations]
symbol:lmo3 "LIM domain only protein 3" species:8355
"Xenopus laevis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 HSSP:P61969 HOVERGEN:HBG054231
EMBL:U94991 EMBL:BC079734 RefSeq:NP_001084116.1 UniGene:Xl.6611
ProteinModelPortal:Q9YH16 SMR:Q9YH16 GeneID:399311 KEGG:xla:399311
CTD:399311 Xenbase:XB-GENE-6254052 Uniprot:Q9YH16
Length = 156
Score = 112 (44.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA++ V+HL CF C C GD F +++ MI C+ YE
Sbjct: 95 IPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 143
>UNIPROTKB|F1N959 [details] [associations]
symbol:F1N959 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02072754 EMBL:AADN02072755
EMBL:AADN02072756 EMBL:AADN02072757 EMBL:AADN02072758
IPI:IPI00819883 Ensembl:ENSGALT00000024015 ArrayExpress:F1N959
Uniprot:F1N959
Length = 303
Score = 98 (39.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 135 AGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 194
AG + +G ++T R+RT QL T+++ + N PDA +QL + TGLS RV+
Sbjct: 119 AGGGT-SAGAPPPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVI 177
Query: 195 Q 195
+
Sbjct: 178 R 178
Score = 60 (26.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYEILRHRDYC 59
+ ++R DL +H C C C L + +RD YC+ Y +R+ C
Sbjct: 13 QYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDY--IRYAICC 64
>ZFIN|ZDB-GENE-050522-201 [details] [associations]
symbol:lmo3 "LIM domain only 3" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-050522-201 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OMA:HTEIGIY EMBL:AL954848
IPI:IPI00855464 UniGene:Dr.85219 SMR:B0R1F5
Ensembl:ENSDART00000112860 Uniprot:B0R1F5
Length = 167
Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE 51
I + E+VMRA++ V+HL CF C C GD F +++ MI C+ YE
Sbjct: 106 IPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 154
>WB|WBGene00000438 [details] [associations]
symbol:ceh-14 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0040040 "thermosensory behavior" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] Pfam:PF00412 InterPro:IPR001841
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00184
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0040040 EMBL:FO081392
GO:GO:0016048 EMBL:AF244368 PIR:S05710 RefSeq:NP_509273.1
UniGene:Cel.18140 ProteinModelPortal:P20271 SMR:P20271
IntAct:P20271 STRING:P20271 PaxDb:P20271 EnsemblMetazoa:F46C8.5
GeneID:181012 KEGG:cel:CELE_F46C8.5 UCSC:F46C8.5 CTD:181012
WormBase:F46C8.5 eggNOG:NOG275246 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 InParanoid:P20271 KO:K09374 OMA:PIESING
NextBio:911980 Uniprot:P20271
Length = 351
Score = 86 (35.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGM--RDEMIYCRPHYEILRHRDYC 59
GI +V +A + V+H+ CF C C L G+ F + D + C+ YE R + +C
Sbjct: 113 GIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDYEQARDK-HC 171
Query: 60 GSAE 63
E
Sbjct: 172 NELE 175
Score = 75 (31.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ L T+K + + P +QLA +TGL RV+Q
Sbjct: 181 KRPRTTISAKSLETLKQAYQTSSKPARHVREQLASETGLDMRVVQ 225
>UNIPROTKB|P20271 [details] [associations]
symbol:ceh-14 "Homeobox protein ceh-14" species:6239
"Caenorhabditis elegans" [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0016048 "detection of
temperature stimulus" evidence=IMP] Pfam:PF00412 InterPro:IPR001841
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00184
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0040040 EMBL:FO081392
GO:GO:0016048 EMBL:AF244368 PIR:S05710 RefSeq:NP_509273.1
UniGene:Cel.18140 ProteinModelPortal:P20271 SMR:P20271
IntAct:P20271 STRING:P20271 PaxDb:P20271 EnsemblMetazoa:F46C8.5
GeneID:181012 KEGG:cel:CELE_F46C8.5 UCSC:F46C8.5 CTD:181012
WormBase:F46C8.5 eggNOG:NOG275246 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 InParanoid:P20271 KO:K09374 OMA:PIESING
NextBio:911980 Uniprot:P20271
Length = 351
Score = 86 (35.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 2 GISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGM--RDEMIYCRPHYEILRHRDYC 59
GI +V +A + V+H+ CF C C L G+ F + D + C+ YE R + +C
Sbjct: 113 GIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDYEQARDK-HC 171
Query: 60 GSAE 63
E
Sbjct: 172 NELE 175
Score = 75 (31.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
KR RT+ L T+K + + P +QLA +TGL RV+Q
Sbjct: 181 KRPRTTISAKSLETLKQAYQTSSKPARHVREQLASETGLDMRVVQ 225
>UNIPROTKB|E1C2D6 [details] [associations]
symbol:E1C2D6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001558
"regulation of cell growth" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0021542 "dentate gyrus development"
evidence=IEA] [GO:0021549 "cerebellum development" evidence=IEA]
[GO:0021953 "central nervous system neuron differentiation"
evidence=IEA] [GO:0030901 "midbrain development" evidence=IEA]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0001558 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
EMBL:AADN02034025 EMBL:AADN02034026 EMBL:AADN02034027
EMBL:AADN02034028 EMBL:AADN02034029 IPI:IPI00590021
Ensembl:ENSGALT00000005411 OMA:XKSDDEE Uniprot:E1C2D6
Length = 386
Score = 91 (37.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
H+R KR RT Q R K+ F ++ P K + LA +TGLS RV+Q
Sbjct: 197 HKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 245
Score = 68 (29.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHYE--ILRHRDYCG 60
+ + ++R D ++H C C SC L + RD+ +YC+ YE +L G
Sbjct: 41 VIADRFLLRLNDSLWHERCVQCTSCKEPLHTTCFY--RDKKLYCKLDYEKYVLNFFKKPG 98
Query: 61 SAEIEQPMSPRPA 73
+ P PA
Sbjct: 99 GCSEKAAEIPSPA 111
>UNIPROTKB|E1BWH2 [details] [associations]
symbol:E1BWH2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001102 "RNA polymerase
II activating transcription factor binding" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001755 "neural crest cell migration"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0003148 "outflow tract septum morphogenesis"
evidence=IEA] [GO:0003203 "endocardial cushion morphogenesis"
evidence=IEA] [GO:0003215 "cardiac right ventricle morphogenesis"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010575 "positive regulation
vascular endothelial growth factor production" evidence=IEA]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA] [GO:0021524 "visceral motor neuron differentiation"
evidence=IEA] [GO:0021559 "trigeminal nerve development"
evidence=IEA] [GO:0021983 "pituitary gland development"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA]
[GO:0032725 "positive regulation of granulocyte macrophage
colony-stimulating factor production" evidence=IEA] [GO:0032729
"positive regulation of interferon-gamma production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032731 "positive regulation of interleukin-1
beta production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032755 "positive
regulation of interleukin-6 production" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043425
"bHLH transcription factor binding" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IEA] [GO:0045766 "positive regulation of angiogenesis"
evidence=IEA] [GO:0048880 "sensory system development"
evidence=IEA] [GO:0048936 "peripheral nervous system neuron
axonogenesis" evidence=IEA] [GO:0050728 "negative regulation of
inflammatory response" evidence=IEA] [GO:0055010 "ventricular
cardiac muscle tissue morphogenesis" evidence=IEA] [GO:0060037
"pharyngeal system development" evidence=IEA] [GO:0060379 "cardiac
muscle cell myoblast differentiation" evidence=IEA] [GO:0060384
"innervation" evidence=IEA] [GO:0060413 "atrial septum
morphogenesis" evidence=IEA] [GO:0060913 "cardiac cell fate
determination" evidence=IEA] [GO:0071657 "positive regulation of
granulocyte colony-stimulating factor production" evidence=IEA]
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0043524
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0090090 GO:GO:0001105
GO:GO:0001158 GO:GO:0042517 GeneTree:ENSGT00700000104050
GO:GO:0043388 GO:GO:0003266 IPI:IPI00598855 OMA:TDMGDMG
EMBL:AADN02072754 EMBL:AADN02072755 EMBL:AADN02072756
EMBL:AADN02072757 EMBL:AADN02072758 Ensembl:ENSGALT00000038907
ArrayExpress:E1BWH2 Uniprot:E1BWH2
Length = 339
Score = 94 (38.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
++T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 169 EKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 216
Score = 61 (26.5 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 7 ELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEMIYCRPHY--EI-LRHRDYC-GS 61
+ ++R DL +H C C C L + +RD YC+ Y +I R + Y G
Sbjct: 27 QYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYIRKINTRAKMYSTGF 86
Query: 62 AEIEQPMSPRPAP 74
++E M+ R P
Sbjct: 87 EKLELRMTLRYGP 99
>UNIPROTKB|Q801P0 [details] [associations]
symbol:lmo4-b "LIM domain transcription factor LMO4-B"
species:8355 "Xenopus laevis" [GO:0003712 "transcription cofactor
activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007498 "mesoderm development" evidence=ISS]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0007498 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0045665 GO:GO:0006351 Gene3D:2.10.110.10 GO:GO:0003712
GO:GO:0007369 HSSP:P61969 HOVERGEN:HBG054231 EMBL:BC048020
RefSeq:NP_001079705.1 UniGene:Xl.15362 ProteinModelPortal:Q801P0
SMR:Q801P0 GeneID:379392 KEGG:xla:379392 CTD:379392
Xenbase:XB-GENE-6256064 Uniprot:Q801P0
Length = 171
Score = 109 (43.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC---RPHYEILRHRDYC 59
I +SE+VMRA+ V+HL CFTC +C L GD F + I+C RP + H +
Sbjct: 95 IPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHDRPTGLLNGHLNPL 154
Query: 60 GSAEIE-QPMSP 70
S ++ PM P
Sbjct: 155 QSNPLQGSPMLP 166
>UNIPROTKB|Q8AW92 [details] [associations]
symbol:lmo4-a "LIM domain transcription factor LMO4-A"
species:8355 "Xenopus laevis" [GO:0003712 "transcription cofactor
activity" evidence=IMP] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007498 "mesoderm development" evidence=IMP]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0007498 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0045665 GO:GO:0006351 Gene3D:2.10.110.10 GO:GO:0003712
GO:GO:0007369 HSSP:P61969 HOVERGEN:HBG054231 EMBL:AJ511277
EMBL:BC108585 RefSeq:NP_001079179.1 UniGene:Xl.5131
ProteinModelPortal:Q8AW92 SMR:Q8AW92 GeneID:373776 KEGG:xla:373776
CTD:373776 Xenbase:XB-GENE-865262 Uniprot:Q8AW92
Length = 171
Score = 109 (43.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC---RPHYEILRHRDYC 59
I +SE+VMRA+ V+HL CFTC +C L GD F + I+C RP + H +
Sbjct: 95 IPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHDRPTGLLNGHLNPL 154
Query: 60 GSAEIE-QPMSP 70
S ++ PM P
Sbjct: 155 QSNPLQGSPMLP 166
>UNIPROTKB|Q5FVB2 [details] [associations]
symbol:lmo4.1 "LIM domain transcription factor LMO4.1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0007498 "mesoderm
development" evidence=ISS] [GO:0045665 "negative regulation of
neuron differentiation" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0007498 GO:GO:0046872
GO:GO:0008270 GO:GO:0045944 GO:GO:0045665 GO:GO:0006351
Gene3D:2.10.110.10 GO:GO:0003712 GO:GO:0007369
GeneTree:ENSGT00700000104177 HSSP:P61969 HOGENOM:HOG000232175
HOVERGEN:HBG054231 EMBL:BC090104 RefSeq:NP_001015822.1
UniGene:Str.52903 ProteinModelPortal:Q5FVB2 SMR:Q5FVB2
Ensembl:ENSXETT00000050669 GeneID:548539 KEGG:xtr:548539 CTD:548539
Xenbase:XB-GENE-479327 eggNOG:NOG314117 InParanoid:Q5FVB2
OMA:DRYWHTR OrthoDB:EOG4XKV82 Bgee:Q5FVB2 Uniprot:Q5FVB2
Length = 167
Score = 107 (42.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SE+VMRA+ V+HL CFTC +C L GD F + I+C
Sbjct: 95 IPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGAIFC 138
>RGD|1308749 [details] [associations]
symbol:Lhx8 "LIM homeobox 8" species:10116 "Rattus norvegicus"
[GO:0007611 "learning or memory" evidence=ISO] [GO:0008585 "female
gonad development" evidence=ISO] [GO:0021879 "forebrain neuron
differentiation" evidence=ISO] [GO:0021884 "forebrain neuron
development" evidence=ISO] [GO:0042475 "odontogenesis of
dentin-containing tooth" evidence=ISO] InterPro:IPR001356
InterPro:IPR009057 Pfam:PF00046 RGD:1308749 GO:GO:0008585
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.60 GO:GO:0007611
GO:GO:0042475 GO:GO:0021884 EMBL:AF220000 IPI:IPI00554063
UniGene:Rn.133072 STRING:Q9JL00 InParanoid:Q9JL00
Genevestigator:Q9JL00 Uniprot:Q9JL00
Length = 38
Score = 96 (38.9 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 18/35 (51%), Positives = 29/35 (82%)
Query: 161 QLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
QL+ M++ F + NPDA+ L++LA++TGLS+RV+Q
Sbjct: 3 QLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQ 37
>WB|WBGene00003167 [details] [associations]
symbol:mec-3 species:6239 "Caenorhabditis elegans"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016358 "dendrite development"
evidence=IMP] [GO:0007638 "mechanosensory behavior" evidence=IMP]
[GO:0009612 "response to mechanical stimulus" evidence=IMP]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0016358 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0001190 GO:GO:0000977
GeneTree:ENSGT00700000104050 GO:GO:0007638 eggNOG:NOG257130
EMBL:L02877 EMBL:M20244 EMBL:Z81054 PIR:S28390 PIR:T20458
RefSeq:NP_001023111.1 RefSeq:NP_001023112.1 UniGene:Cel.19754
ProteinModelPortal:P09088 SMR:P09088 STRING:P09088 PaxDb:P09088
EnsemblMetazoa:F01D4.6a GeneID:177938 KEGG:cel:CELE_F01D4.6
UCSC:F01D4.6a CTD:177938 WormBase:F01D4.6a WormBase:F01D4.6b
HOGENOM:HOG000064530 InParanoid:P09088 KO:K09376 OMA:VIDSIGV
NextBio:899038 ArrayExpress:P09088 Uniprot:P09088
Length = 321
Score = 84 (34.6 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 2 GISSSELVMRAR-DLVFHLHCFTCISCGILLTKGDLFGMRDEM--IYCRPHY 50
G+S +++V + + LVFH+ C C CG L+ G+ + D M + C HY
Sbjct: 95 GVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQILVDDTMMTVSCMSHY 146
Score = 70 (29.7 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
RT+ K +QL + F+ P +LA +TGLS RV+Q
Sbjct: 221 RTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQ 262
>ZFIN|ZDB-GENE-010702-1 [details] [associations]
symbol:lmo4a "LIM domain only 4a" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0030900 "forebrain
development" evidence=IMP;IDA] [GO:0031076 "embryonic camera-type
eye development" evidence=IMP;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-010702-1 GO:GO:0046872
GO:GO:0008270 GO:GO:0030900 Gene3D:2.10.110.10 GO:GO:0031076
GeneTree:ENSGT00700000104177 HSSP:P70662 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 OMA:DRYWHTR EMBL:CR855258
EMBL:BC045835 EMBL:AY028903 IPI:IPI00495249 RefSeq:NP_817093.1
UniGene:Dr.107376 SMR:Q8QG63 STRING:Q8QG63
Ensembl:ENSDART00000085219 GeneID:114412 KEGG:dre:114412 CTD:114412
InParanoid:Q8QG63 OrthoDB:EOG4T4CWR NextBio:20796903 Uniprot:Q8QG63
Length = 167
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SE+VMRA+ V+HL CFTC +C L GD F + I+C
Sbjct: 95 IPASEMVMRAQGNVYHLKCFTCATCRNRLVPGDRFHYVNGTIFC 138
>UNIPROTKB|E1BYB0 [details] [associations]
symbol:LMO4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 EMBL:AADN02012827 EMBL:AADN02012828
IPI:IPI00819278 Ensembl:ENSGALT00000010105 ArrayExpress:E1BYB0
Uniprot:E1BYB0
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 94 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>UNIPROTKB|Q3SWZ8 [details] [associations]
symbol:LMO4 "LIM domain transcription factor LMO4"
species:9913 "Bos taurus" [GO:0050865 "regulation of cell
activation" evidence=IEA] [GO:0048538 "thymus development"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0042659
"regulation of cell fate specification" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0021527 "spinal cord association neuron differentiation"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IEA] [GO:0021514 "ventral spinal cord
interneuron differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003281 "ventricular septum development" evidence=IEA]
[GO:0001843 "neural tube closure" evidence=IEA] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0031333 GO:GO:0008270 GO:GO:0045944 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366 GO:GO:0001843
GO:GO:0048538 GO:GO:0001158 GO:GO:0021527 GO:GO:0042659
GO:GO:0003281 GO:GO:0021514 GeneTree:ENSGT00700000104177
HOGENOM:HOG000232175 HOVERGEN:HBG054231 eggNOG:NOG314117
OrthoDB:EOG4XKV82 OMA:ALSWKRC EMBL:BC104582 IPI:IPI00705980
RefSeq:NP_001029923.1 UniGene:Bt.3730 ProteinModelPortal:Q3SWZ8
SMR:Q3SWZ8 PRIDE:Q3SWZ8 Ensembl:ENSBTAT00000000389 GeneID:614212
KEGG:bta:614212 CTD:8543 InParanoid:Q3SWZ8 NextBio:20898998
GO:GO:0050865 Uniprot:Q3SWZ8
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 94 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>UNIPROTKB|E2QSI3 [details] [associations]
symbol:LMO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050865 "regulation of cell activation"
evidence=IEA] [GO:0048538 "thymus development" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042659 "regulation of
cell fate specification" evidence=IEA] [GO:0031333 "negative
regulation of protein complex assembly" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0003281 "ventricular septum
development" evidence=IEA] [GO:0001843 "neural tube closure"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0031333 GO:GO:0008270
GO:GO:0045944 GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0006366 GO:GO:0001843 GO:GO:0048538 GO:GO:0001158
GO:GO:0021527 GO:GO:0042659 GO:GO:0003281 GO:GO:0021514
GeneTree:ENSGT00700000104177 OMA:ALSWKRC CTD:8543 GO:GO:0050865
EMBL:AAEX03004843 EMBL:AAEX03004844 RefSeq:XP_003434840.1
RefSeq:XP_537086.1 RefSeq:XP_867313.1 SMR:E2QSI3
Ensembl:ENSCAFT00000036423 GeneID:479962 KEGG:cfa:479962
NextBio:20855066 Uniprot:E2QSI3
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 94 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>UNIPROTKB|P61968 [details] [associations]
symbol:LMO4 "LIM domain transcription factor LMO4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0003281 "ventricular septum development"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0042659 "regulation of cell fate specification" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048538 "thymus
development" evidence=IEA] [GO:0050865 "regulation of cell
activation" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0001843 "neural tube closure" evidence=ISS]
[GO:0008134 "transcription factor binding" evidence=ISS]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0031333 GO:GO:0008270
GO:GO:0045944 Pathway_Interaction_DB:il6_7pathway GO:GO:0003700
EMBL:CH471097 GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0006366 GO:GO:0001843 GO:GO:0048538 GO:GO:0008134
GO:GO:0001158 GO:GO:0021527 GO:GO:0042659 GO:GO:0003281 PDB:2L4Z
PDBsum:2L4Z GO:GO:0021514 HOGENOM:HOG000232175 HOVERGEN:HBG054231
eggNOG:NOG314117 OrthoDB:EOG4XKV82 OMA:ALSWKRC CTD:8543
GO:GO:0050865 EMBL:U24576 EMBL:BC003600 EMBL:BC017673 EMBL:BC065818
IPI:IPI00297604 RefSeq:NP_006760.1 UniGene:Hs.436792
ProteinModelPortal:P61968 SMR:P61968 IntAct:P61968 MINT:MINT-265427
STRING:P61968 DMDM:48428992 PRIDE:P61968 Ensembl:ENST00000370542
Ensembl:ENST00000370544 GeneID:8543 KEGG:hsa:8543 UCSC:uc001dmi.3
GeneCards:GC01P087794 HGNC:HGNC:6644 HPA:CAB022345 MIM:603129
neXtProt:NX_P61968 PharmGKB:PA30410 InParanoid:P61968
PhylomeDB:P61968 ChiTaRS:LMO4 EvolutionaryTrace:P61968
GenomeRNAi:8543 NextBio:32002 Bgee:P61968 CleanEx:HS_LMO4
Genevestigator:P61968 GermOnline:ENSG00000143013 Uniprot:P61968
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 94 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>UNIPROTKB|A9ED91 [details] [associations]
symbol:LMO4 "LIM domain only 4" species:9823 "Sus scrofa"
[GO:0050865 "regulation of cell activation" evidence=IEA]
[GO:0048538 "thymus development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0042659 "regulation of cell fate
specification" evidence=IEA] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IEA] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IEA]
[GO:0021514 "ventral spinal cord interneuron differentiation"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003281 "ventricular septum development"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0031333 GO:GO:0008270 GO:GO:0045944
GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366
GO:GO:0001843 GO:GO:0048538 GO:GO:0001158 GO:GO:0021527
GO:GO:0042659 GO:GO:0003281 GO:GO:0021514
GeneTree:ENSGT00700000104177 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 OrthoDB:EOG4XKV82 OMA:ALSWKRC
CTD:8543 GO:GO:0050865 EMBL:CU550656 EMBL:AB304401
RefSeq:NP_001106156.1 UniGene:Ssc.9714 ProteinModelPortal:A9ED91
SMR:A9ED91 STRING:A9ED91 PRIDE:A9ED91 Ensembl:ENSSSCT00000007590
GeneID:100127155 KEGG:ssc:100127155 Uniprot:A9ED91
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 94 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>UNIPROTKB|Q6DJ06 [details] [associations]
symbol:lmo4.2 "LIM domain transcription factor LMO4.2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0007498 "mesoderm
development" evidence=ISS] [GO:0045665 "negative regulation of
neuron differentiation" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0007498 GO:GO:0046872
GO:GO:0008270 GO:GO:0045944 GO:GO:0045665 GO:GO:0006351
Gene3D:2.10.110.10 GO:GO:0003712 GO:GO:0007369
GeneTree:ENSGT00700000104177 HSSP:P61969 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 EMBL:CR760333 EMBL:BC075379
RefSeq:NP_001004922.1 UniGene:Str.145 ProteinModelPortal:Q6DJ06
SMR:Q6DJ06 Ensembl:ENSXETT00000053847 GeneID:448304 KEGG:xtr:448304
CTD:447751 Xenbase:XB-GENE-971939 InParanoid:Q6DJ06 OMA:ALSWKRC
Bgee:Q6DJ06 Uniprot:Q6DJ06
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 94 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>MGI|MGI:109360 [details] [associations]
symbol:Lmo4 "LIM domain only 4" species:10090 "Mus musculus"
[GO:0001158 "enhancer sequence-specific DNA binding" evidence=IDA]
[GO:0001843 "neural tube closure" evidence=IMP] [GO:0003281
"ventricular septum development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008134 "transcription
factor binding" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IDA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IDA] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IGI] [GO:0031333
"negative regulation of protein complex assembly" evidence=IDA]
[GO:0042659 "regulation of cell fate specification" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048538 "thymus development"
evidence=IGI] [GO:0050865 "regulation of cell activation"
evidence=IMP] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 MGI:MGI:109360 GO:GO:0046872
GO:GO:0031333 GO:GO:0008270 GO:GO:0045944 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366 GO:GO:0001843
GO:GO:0048538 GO:GO:0008134 GO:GO:0001158 GO:GO:0021527
GO:GO:0042659 GO:GO:0003281 GO:GO:0021514 PDB:1M3V PDB:1RUT
PDBsum:1M3V PDBsum:1RUT HOGENOM:HOG000232175 HOVERGEN:HBG054231
eggNOG:NOG314117 OrthoDB:EOG4XKV82 OMA:ALSWKRC CTD:8543
GO:GO:0050865 ChiTaRS:LMO4 EMBL:AF074600 EMBL:AF102817
EMBL:AF096996 EMBL:BC003488 EMBL:BC004661 EMBL:BC010278
IPI:IPI00281974 RefSeq:NP_001155241.1 RefSeq:NP_001155242.1
RefSeq:NP_034853.1 UniGene:Mm.29187 PDB:2DFY PDBsum:2DFY
ProteinModelPortal:P61969 SMR:P61969 STRING:P61969 PRIDE:P61969
Ensembl:ENSMUST00000120539 Ensembl:ENSMUST00000121112
Ensembl:ENSMUST00000121796 GeneID:16911 KEGG:mmu:16911
InParanoid:P61969 EvolutionaryTrace:P61969 NextBio:290952
Bgee:P61969 CleanEx:MM_LMO4 Genevestigator:P61969 Uniprot:P61969
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 94 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>RGD|1305670 [details] [associations]
symbol:Lmo4 "LIM domain only 4" species:10116 "Rattus
norvegicus" [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA;ISO] [GO:0001843 "neural tube closure"
evidence=IEA;ISO] [GO:0003281 "ventricular septum development"
evidence=IEA;ISO] [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0008134 "transcription factor
binding" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IEA;ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA;ISO] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IEA;ISO] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA;ISO]
[GO:0042659 "regulation of cell fate specification"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0048538
"thymus development" evidence=IEA;ISO] [GO:0050865 "regulation of
cell activation" evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 RGD:1305670
GO:GO:0046872 GO:GO:0031333 GO:GO:0008270 GO:GO:0045944
GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366
GO:GO:0001843 GO:GO:0048538 GO:GO:0001158 GO:GO:0021527
GO:GO:0042659 EMBL:CH473952 GO:GO:0003281 GO:GO:0021514
GeneTree:ENSGT00700000104177 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 OrthoDB:EOG4XKV82 CTD:8543
GO:GO:0050865 EMBL:BC087700 IPI:IPI00202852 RefSeq:NP_001009708.1
UniGene:Rn.2517 SMR:Q5PPG8 STRING:Q5PPG8 Ensembl:ENSRNOT00000067502
GeneID:362051 KEGG:rno:362051 UCSC:RGD:1305670 InParanoid:Q5PPG8
NextBio:678516 Genevestigator:Q5PPG8 Uniprot:Q5PPG8
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 94 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>ZFIN|ZDB-GENE-030131-3570 [details] [associations]
symbol:lmo4b "LIM domain only 4b" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-030131-3570 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 HSSP:P70662 HOVERGEN:HBG054231 EMBL:AF398515
IPI:IPI00497185 RefSeq:NP_997854.1 UniGene:Dr.78922
ProteinModelPortal:Q8JFQ1 SMR:Q8JFQ1 STRING:Q8JFQ1 GeneID:324849
KEGG:dre:324849 CTD:324849 InParanoid:Q8JFQ1 NextBio:20808994
ArrayExpress:Q8JFQ1 Uniprot:Q8JFQ1
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 94 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>ZFIN|ZDB-GENE-040426-1099 [details] [associations]
symbol:zgc:56628 "zgc:56628" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-040426-1099
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 HSSP:P70662 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 EMBL:BX927330 EMBL:BC049054
IPI:IPI00512792 RefSeq:NP_956566.1 UniGene:Dr.18443 SMR:Q7ZUG7
Ensembl:ENSDART00000022112 GeneID:393242 KEGG:dre:393242
OMA:TELRTCV NextBio:20814305 Uniprot:Q7ZUG7
Length = 172
Score = 105 (42.0 bits), Expect = 0.00018, P = 0.00018
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC-RPHYEILRHRDYCGS 61
I ++E+VMRA+ VFH+ CF C C L GD F + +YC R H D
Sbjct: 105 IPANEMVMRAQGNVFHVKCFVCSICHNQLVPGDRFHYANGKLYCERDKSAASEHSDSLRE 164
Query: 62 AEIEQPMS 69
+I Q S
Sbjct: 165 HDISQQKS 172
>UNIPROTKB|F1P113 [details] [associations]
symbol:LMO4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IEA] [GO:0001843
"neural tube closure" evidence=IEA] [GO:0003281 "ventricular septum
development" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] [GO:0021514 "ventral spinal cord
interneuron differentiation" evidence=IEA] [GO:0021522 "spinal cord
motor neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0042659 "regulation of cell fate specification" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048538 "thymus
development" evidence=IEA] [GO:0050865 "regulation of cell
activation" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0031333 GO:GO:0008270 GO:GO:0045944 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0006366 GO:GO:0001158 GO:GO:0042659
GeneTree:ENSGT00700000104177 OMA:ALSWKRC GO:GO:0050865
EMBL:AADN02012827 EMBL:AADN02012828 IPI:IPI00582860
Ensembl:ENSGALT00000033333 ArrayExpress:F1P113 Uniprot:F1P113
Length = 174
Score = 105 (42.0 bits), Expect = 0.00019, P = 0.00019
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SELVMRA+ V+HL CFTC +C L GD F + ++C
Sbjct: 103 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 146
>ZFIN|ZDB-GENE-081105-149 [details] [associations]
symbol:si:dkey-90l8.3 "si:dkey-90l8.3" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-081105-149 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177 EMBL:CU984584
IPI:IPI00501922 Ensembl:ENSDART00000074551 Uniprot:F1QMD9
Length = 165
Score = 102 (41.0 bits), Expect = 0.00037, P = 0.00037
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 3 ISSSELVMRARDLVFHLHCFTCISCGILLTKGDLFGMRDEMIYC 46
I +SE+VMRA+ V+HL CF+C +C L GD F + I+C
Sbjct: 96 IPASEMVMRAQGNVYHLKCFSCATCRNQLVPGDRFHYVNGTIFC 139
>UNIPROTKB|O73590 [details] [associations]
symbol:ZFHX4 "Zinc finger homeobox protein 4" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00096
InterPro:IPR001356 InterPro:IPR003604 InterPro:IPR007087
InterPro:IPR009057 InterPro:IPR013087 InterPro:IPR015880
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00028
PROSITE:PS50071 PROSITE:PS50157 SMART:SM00355 SMART:SM00389
SMART:SM00451 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:3.30.160.60 eggNOG:NOG301069
HOGENOM:HOG000155777 HOVERGEN:HBG050606 OrthoDB:EOG4Z0B4P
EMBL:U26150 IPI:IPI00679968 UniGene:Gga.54907 UniGene:Gga.55112
UniGene:Gga.56109 ProteinModelPortal:O73590 SMR:O73590
NextBio:20815969 Uniprot:O73590
Length = 3573
Score = 112 (44.5 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 18/50 (36%), Positives = 37/50 (74%)
Query: 147 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
H + KR RT QL+ +++YF+IN +P + ++++A+K+GLS++V+++
Sbjct: 2069 HSQFKRPRTRITDDQLKILRAYFDINNSPSEEQIQEMAEKSGLSQKVIKH 2118
Score = 50 (22.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 67 PMSPRPAPWQPTTVQKGRPRKRK---LSVDSPTPP 98
P P P P QP++ G+ + L PTPP
Sbjct: 1954 PPPPPPTPSQPSSAGAGKIQNTTPTPLQAPPPTPP 1988
>RGD|1560268 [details] [associations]
symbol:Zfhx3 "zinc finger homeobox 3" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005667 "transcription
factor complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0007050 "cell cycle
arrest" evidence=IEP] [GO:0007420 "brain development" evidence=IEP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045662 "negative regulation of myoblast
differentiation" evidence=ISO] [GO:0045663 "positive regulation of
myoblast differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=IEP] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
Pfam:PF00096 InterPro:IPR001356 InterPro:IPR003604
InterPro:IPR007087 InterPro:IPR009057 InterPro:IPR013087
InterPro:IPR015880 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00028 PROSITE:PS50071 PROSITE:PS50157 SMART:SM00355
SMART:SM00389 SMART:SM00451 RGD:1560268 GO:GO:0005525 GO:GO:0005634
GO:GO:0005737 GO:GO:0045664 GO:GO:0007420 GO:GO:0043565
GO:GO:0008270 GO:GO:0003924 GO:GO:0006184 GO:GO:0003700
GO:GO:0007050 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.30.160.60
GeneTree:ENSGT00530000063717 IPI:IPI00951506
Ensembl:ENSRNOT00000068594 ArrayExpress:F1M547 Uniprot:F1M547
Length = 2537
Score = 111 (44.1 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
Q+ KR RT QLR ++ YF+IN +P + +K++A K+GL ++V+++
Sbjct: 966 QQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKH 1014
Score = 47 (21.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 28 GILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRK 87
G LL GDL M D + H I+ D +++E SP + G K
Sbjct: 290 GGLLANGDLLAMGDPTL-AEDH-TIIVEEDKEEESDLEDKQSPTGSDSGSVQEDSGSEPK 347
Query: 88 RKL 90
R L
Sbjct: 348 RAL 350
>UNIPROTKB|F1M4Q6 [details] [associations]
symbol:Zfhx3 "Protein Zfhx3" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045662 "negative regulation of myoblast
differentiation" evidence=IEA] [GO:0045663 "positive regulation of
myoblast differentiation" evidence=IEA] Pfam:PF00096
InterPro:IPR001356 InterPro:IPR003604 InterPro:IPR007087
InterPro:IPR009057 InterPro:IPR013087 InterPro:IPR015880
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00028
PROSITE:PS50071 PROSITE:PS50157 SMART:SM00355 SMART:SM00389
SMART:SM00451 RGD:1560268 GO:GO:0005525 GO:GO:0005739 GO:GO:0043565
GO:GO:0008270 GO:GO:0003924 GO:GO:0006184 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 GO:GO:0000122
GO:GO:0044212 Gene3D:3.30.160.60 GO:GO:0045662 GO:GO:0045663
GeneTree:ENSGT00530000063717 IPI:IPI00359640
Ensembl:ENSRNOT00000019408 ArrayExpress:F1M4Q6 Uniprot:F1M4Q6
Length = 2542
Score = 111 (44.1 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
Q+ KR RT QLR ++ YF+IN +P + +K++A K+GL ++V+++
Sbjct: 966 QQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKH 1014
Score = 47 (21.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 28 GILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRK 87
G LL GDL M D + H I+ D +++E SP + G K
Sbjct: 290 GGLLANGDLLAMGDPTL-AEDH-TIIVEEDKEEESDLEDKQSPTGSDSGSVQEDSGSEPK 347
Query: 88 RKL 90
R L
Sbjct: 348 RAL 350
>UNIPROTKB|F1S397 [details] [associations]
symbol:ZFHX3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IEA] [GO:0045662 "negative regulation of
myoblast differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00096
InterPro:IPR001356 InterPro:IPR003604 InterPro:IPR007087
InterPro:IPR009057 InterPro:IPR013087 InterPro:IPR015880
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00028
PROSITE:PS50071 PROSITE:PS50157 SMART:SM00355 SMART:SM00389
SMART:SM00451 GO:GO:0005525 GO:GO:0005739 GO:GO:0043565
GO:GO:0008270 GO:GO:0003924 GO:GO:0006184 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 GO:GO:0000122
GO:GO:0044212 Gene3D:3.30.160.60 GO:GO:0045662 GO:GO:0045663
GeneTree:ENSGT00530000063717 OMA:SMDAMEI EMBL:CU442712
EMBL:CU694824 Ensembl:ENSSSCT00000003049 Uniprot:F1S397
Length = 2637
Score = 111 (44.1 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
Q+ KR RT QLR ++ YF+IN +P + +K++A K+GL ++V+++
Sbjct: 1079 QQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKH 1127
Score = 46 (21.3 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 28 GILLTKGDLFGMRDEMIYCRPHYEILRHRDYCGSAEIEQPMSPRPAPWQPTTVQKGRPRK 87
G LL GDL M D + H I+ D +++E SP + G K
Sbjct: 394 GGLLANGDLLAMGDPTL-AEDH-TIIVEEDKEEESDLEDKQSPTGSDSGSIQEDSGSEPK 451
Query: 88 RKL 90
R L
Sbjct: 452 RAL 454
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 196 180 0.00092 109 3 11 22 0.40 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 205
No. of states in DFA: 597 (63 KB)
Total size of DFA: 159 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.08u 0.09s 19.17t Elapsed: 00:00:10
Total cpu time: 19.11u 0.09s 19.20t Elapsed: 00:00:10
Start: Thu Aug 15 14:27:20 2013 End: Thu Aug 15 14:27:30 2013
WARNINGS ISSUED: 1