RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17504
         (196 letters)



>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 77

 Score = 51.8 bits (124), Expect = 5e-10
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 138 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           ++P +     + T++ R  +  HQ   ++  F  N         ++A+   L++R ++ 
Sbjct: 1   NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 59


>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 80

 Score = 50.8 bits (121), Expect = 1e-09
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN----INQNPDAKDLKQLAQKTGL 189
           G+  SS  +   S   TKR RT F   Q   M ++        Q  D   ++Q   +TG+
Sbjct: 1   GSSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGV 60

Query: 190 SKRVLQN 196
            ++VL+ 
Sbjct: 61  RRQVLKI 67


>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 66

 Score = 50.2 bits (120), Expect = 1e-09
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           +T R+RT     QL T+++ +  N  PDA   +QL + TGLS RV++ 
Sbjct: 2   KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRV 49


>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 31

 Score = 46.6 bits (111), Expect = 1e-08
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 2  GISSSELVMRARDLVFHLHCF 22
           I +SELVMRA+  V+HL CF
Sbjct: 11 SIPASELVMRAQGNVYHLKCF 31


>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 68

 Score = 46.7 bits (111), Expect = 3e-08
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           +R RTSF   Q+  ++  F     PD    ++LA K  L +  +Q 
Sbjct: 2   QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 47


>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 65

 Score = 46.4 bits (110), Expect = 4e-08
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           + +R RT+F   QL  ++  F   Q PD    ++LAQ+T L++  +Q 
Sbjct: 1   KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 48


>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 60

 Score = 45.7 bits (108), Expect = 5e-08
 Identities = 13/46 (28%), Positives = 26/46 (56%)

Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           +R RT F   QL+ +++ F  N+ PD    +++A  T L++  ++ 
Sbjct: 2   RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRV 47


>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
           [TaxId: 7227]}
          Length = 53

 Score = 45.2 bits (107), Expect = 8e-08
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 152 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           R RT+F   QL  +K  FN N+    +  +QL+ + GL++  ++ 
Sbjct: 1   RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI 45


>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 50

 Score = 44.1 bits (104), Expect = 2e-07
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           R  F   Q RT+ + F  N+ P  +    ++Q+ GL    + N
Sbjct: 2   RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 44


>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 62

 Score = 43.6 bits (103), Expect = 3e-07
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 151 KRMRTSFKHHQLRTMKSYFNINQN---PDAKDLKQLAQKTGLSKRVLQN 196
           K  R     H    M+S+   +     P   + KQ+A +T L+   + N
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNN 51


>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 57

 Score = 43.4 bits (102), Expect = 4e-07
 Identities = 10/45 (22%), Positives = 18/45 (40%)

Query: 152 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           R RT+F   QL  ++  F            +LA +  L +  ++ 
Sbjct: 1   RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKV 45


>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 58

 Score = 43.4 bits (102), Expect = 5e-07
 Identities = 8/45 (17%), Positives = 24/45 (53%)

Query: 152 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           + RT+        ++ +F  +  P ++++ ++A++  L K V++ 
Sbjct: 1   KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 45


>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 88

 Score = 43.8 bits (103), Expect = 5e-07
 Identities = 9/59 (15%), Positives = 22/59 (37%)

Query: 138 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
            +             +RT+F   QL  ++  F+ N+        ++A    L++  ++ 
Sbjct: 15  KTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 73


>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 57

 Score = 42.9 bits (101), Expect = 5e-07
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           K  +  F + Q   ++  F   +     + K+LA+   LS+R ++ 
Sbjct: 1   KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT 46


>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 68

 Score = 42.6 bits (100), Expect = 8e-07
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           ++ R  F   Q+  ++  F   +   A + + LA    L+   ++ 
Sbjct: 3   RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKI 48


>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 58

 Score = 42.6 bits (100), Expect = 9e-07
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           ++ R  +   QLR ++  +  N+       ++++  T LS+R +  
Sbjct: 2   RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITI 47


>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
           melanogaster [TaxId: 7227]}
          Length = 56

 Score = 42.1 bits (99), Expect = 1e-06
 Identities = 7/43 (16%), Positives = 21/43 (48%)

Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           R ++  +Q   ++  F+ N+    +   ++A    L++R ++ 
Sbjct: 1   RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 43


>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 77

 Score = 42.0 bits (98), Expect = 2e-06
 Identities = 8/49 (16%), Positives = 19/49 (38%)

Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
            + ++ R  F   Q   ++  F   +   A + + LA    L+   ++ 
Sbjct: 7   NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKI 55


>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 57

 Score = 41.1 bits (96), Expect = 3e-06
 Identities = 11/43 (25%), Positives = 24/43 (55%)

Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           RTS + +    ++  F  NQ P ++D+  +A++  + K V++ 
Sbjct: 2   RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRV 44


>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 67

 Score = 40.8 bits (95), Expect = 4e-06
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 148 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           Q  KR RTS ++    ++++ F     P  + +  +A + GL K V++ 
Sbjct: 6   QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRV 54


>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 40.7 bits (95), Expect = 6e-06
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 151 KRMRTSFKHHQLRTMKSYFN---INQNPDAKDLKQLAQKTGLSKRVLQN 196
           +R R +F       +  YF     N  P  +  ++LA+K G++   + N
Sbjct: 2   RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50


>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 58

 Score = 40.3 bits (94), Expect = 6e-06
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           ++ RT F   QL  ++  F   Q     +  + +    L++  ++ 
Sbjct: 1   RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKI 46


>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 67

 Score = 40.3 bits (94), Expect = 7e-06
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 151 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           +R RT+F   Q+  ++ +F   +   A  L  L+ K  L    ++ 
Sbjct: 2   RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 47


>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 71

 Score = 40.1 bits (93), Expect = 8e-06
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 146 SHQRTKRMRTSFKHHQLRTMKSYF-NINQNPDAKDLKQLAQKTGLSKRVLQN 196
           S     R RT      L  ++S+  ++   PD + +  L+ +  L K  +  
Sbjct: 3   SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54


>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 53

 Score = 39.5 bits (92), Expect = 9e-06
 Identities = 7/43 (16%), Positives = 23/43 (53%)

Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQN 196
           ++S        ++  F   Q+ ++K+ +++A+K G++   ++ 
Sbjct: 1   KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 43


>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
           (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 152 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 195
             R +++   L  M+SYFN NQ PD    +++A       +   
Sbjct: 2   GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPG 45


>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 60

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 149 RTKRMRTSFKHHQLRTMKSYFNINQN---PDAKDLKQLAQKTGLSKRVLQN 196
           R  R    F    +R ++S+F  N      D K L+ L + T LS+  ++N
Sbjct: 1   RGHR----FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 47


>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 59

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 152 RMRTSFKHHQLRTMKSYFN-INQNPDAKDLKQLAQKTGLSKRVLQN 196
           +     K     T++  F  + + PD K LK L+++   S R +Q 
Sbjct: 3   KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 48


>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 72

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 151 KRMRTSFKHHQLRTMKSYFNINQN-PDAKDLKQLAQKTGLSKRVLQN 196
                +    Q+  ++  FN     PD   L  +A + GL++   Q 
Sbjct: 2   SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48


>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
           (Rattus rattus) [TaxId: 10117]}
          Length = 78

 Score = 35.1 bits (80), Expect = 7e-04
 Identities = 4/37 (10%), Positives = 15/37 (40%)

Query: 154 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLS 190
           R  +     + +   +   +NP  ++ + L ++   +
Sbjct: 1   RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRA 37


>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 52

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 160 HQLRTMKSYFN-INQNPDAKDLKQLAQKTGLSKRVLQN 196
                ++  F  I ++PD K L+ L+++     R +Q 
Sbjct: 3   QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 40


>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 32.0 bits (73), Expect = 0.004
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 22 FTCISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
          F C  C        LF   +   YC   +++L
Sbjct: 1  FVCAQCFQQF-PEGLFYEFEGRKYCEHDFQML 31


>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 34

 Score = 25.2 bits (55), Expect = 0.98
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 22 FTCISCGILLTKGDLFGMRDEM-IYCRPHY 50
          F C+SC +++  GD + +     +YC   +
Sbjct: 1  FACMSCKVIIEDGDAYALVQHATLYCGKCH 30


>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
          FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 24.7 bits (54), Expect = 1.2
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 24 CISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
          C +C   L+ G  F  RD+  YC   +  L
Sbjct: 2  CTACRKQLS-GQRFTARDDFAYCLNCFCDL 30


>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 42

 Score = 23.9 bits (52), Expect = 2.7
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 24 CISCGILLTKGDLFGMRDEMIYCRPHYEIL 53
          C  C   L+ G  +      IYC+PH+  L
Sbjct: 2  CSYCNNKLSLGT-YASLHGRIYCKPHFNQL 30


>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 274

 Score = 26.0 bits (57), Expect = 2.8
 Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 8/73 (10%)

Query: 99  SEDINANV--MRIPSTTLEMLHSGDLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTS 156
           S+     V   ++P TT       D  +     S   G       +   +      M  +
Sbjct: 65  SDGYWPTVNPYKMPGTTETDAKRADSDTGKVLPSAFVGTSKLDDANATAT------MDFT 118

Query: 157 FKHHQLRTMKSYF 169
             +  L   KS+F
Sbjct: 119 NWNQTLTAHKSWF 131


>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
           rhinovirus 16, (HRV-16) [TaxId: 31708]}
          Length = 296

 Score = 25.9 bits (57), Expect = 3.1
 Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 12/62 (19%)

Query: 134 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 193
           GA  S    G HS Q      +S           YFNIN   DA            S R+
Sbjct: 1   GAQVSRQNVGTHSTQNMVSNGSSLN---------YFNINYFKDAASSGASRL---DSDRI 48

Query: 194 LQ 195
           +Q
Sbjct: 49  IQ 50


>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase
           (ROO), C-terminal domain {Desulfovibrio gigas [TaxId:
           879]}
          Length = 152

 Score = 25.0 bits (54), Expect = 5.5
 Identities = 9/43 (20%), Positives = 14/43 (32%)

Query: 141 GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQL 183
           GS   S + TK +             +   +   P   D +QL
Sbjct: 93  GSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQL 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 712,190
Number of extensions: 31376
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 41
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)