BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17505
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZKR|PP Chain p, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 196
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/193 (65%), Positives = 154/193 (79%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIA NSRQ IRKLIKDGLII+KPV VHSR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
AR RKN ARRKGRH G GKRKGTANARMP+K+ W+ RMR+LRRLL++YR++KKID+H+Y
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQXXXXXXXXXXXXXXXXXXIQMK 180
H LY+K KGNVFKNKR+LME IHK KA+K+R KLL+DQ +Q K
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180
Query: 181 RQELLASYAREDE 193
++E++ + ++E+E
Sbjct: 181 KEEIIKTLSKEEE 193
>pdb|3IZR|T Chain T, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 209
Score = 226 bits (575), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 138/158 (87%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI++ NSRQNIRKL+KDG II+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+R R+ EA++KGRH G+GKR+GT AR+P KILW+ RMRVLRRLL+KYR+AKKIDKH+Y
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQ 158
H +Y+K KGN+FKNKRVLME IHK KAEK+R K LSDQ
Sbjct: 121 HDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>pdb|4A1A|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 185
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 129/158 (81%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M SL+LQKRLAASV++CG+K++WLDPNE +EI++ NSR +IRKLIKDGL++K+ +HSR
Sbjct: 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+R R EA+RKGRH G GKRKGT NARMP K+LW+ R RVLRRLL+KYR AKKIDKH Y
Sbjct: 61 SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQ 158
H+ Y+ +KGN++KNK VL+E IH KA+K ++ L+ Q
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQ 158
>pdb|3ZF7|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 260
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 128/158 (81%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M SLKLQ RLAA ++RCG+ +VWLDPNE EI NSR+++RKLIKDGL+++KPV VHSR
Sbjct: 1 MVSLKLQARLAADILRCGRGRVWLDPNEAVEIRNANSRKSVRKLIKDGLVMRKPVKVHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+R R+ K A+ GRH G G+R+GT ARMP K LW+ R+R+LRRLL+KYR+ KKID+H+Y
Sbjct: 61 SRWRQMKLAKSMGRHEGTGRREGTREARMPSKDLWMRRLRILRRLLRKYREEKKIDRHIY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQ 158
+LYMKAKGNVF+NKR LME IHK K EK +A+ L++Q
Sbjct: 121 RELYMKAKGNVFRNKRNLMEHIHKVKNEKKKARQLAEQ 158
>pdb|2WW9|J Chain J, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
To The Yeast 80s Ribosome
pdb|2WWA|J Chain J, Cryo-Em Structure Of Idle Yeast Ssh1 Complex Bound To The
Yeast 80s Ribosome
pdb|2WWB|J Chain J, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
pdb|3IZS|T Chain T, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|S Chain S, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|S Chain S, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|R Chain R, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|R Chain R, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|R Chain R, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 189
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 126/158 (79%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M++L+ QKRLAASV+ GK+KVWLDPNE +EIA NSR IRKL+K+G I+KK V VHS+
Sbjct: 1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSK 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+RTR + +++R+GRH G+GKRKGT AR+P +++W+ R+RVLRRLL KYR A KIDKHLY
Sbjct: 61 SRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQ 158
H LY ++KGN FK+KR L+E I + KA+ R K L+++
Sbjct: 121 HVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEE 158
>pdb|4A17|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2
Length = 185
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 97/147 (65%), Positives = 122/147 (82%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M SL+LQKRLAASV++CG+K++WLDPNE +EI++ NSR +IRKLIKDGL++K+ +HSR
Sbjct: 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+R R EA+RKGRH G GKRKGT NARMP K+LW+ R RVLRRLL+KYR AKKIDKH Y
Sbjct: 61 SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKA 147
H+ Y+ +KGN++KNK VL+E IH KA
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKA 147
>pdb|3JYW|P Chain P, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 176
Score = 172 bits (437), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 115/141 (81%)
Query: 2 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRA 61
++L+ QKRLAASV+ GK+KVWLDPNE +EIA NSR IRKL+K+G I+KK V VHS++
Sbjct: 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKS 60
Query: 62 RTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYH 121
RTR + +++R+GRH G+GKRKGT AR+P +++W+ R+RVLRRLL KYR A KIDKHLYH
Sbjct: 61 RTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYH 120
Query: 122 QLYMKAKGNVFKNKRVLMEFI 142
LY ++KGN FK+KR L+E I
Sbjct: 121 VLYKESKGNAFKHKRALVEHI 141
>pdb|1S1I|P Chain P, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 142
Score = 172 bits (437), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 115/141 (81%)
Query: 2 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRA 61
++L+ QKRLAASV+ GK+KVWLDPNE +EIA NSR IRKL+K+G I+KK V VHS++
Sbjct: 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKS 60
Query: 62 RTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYH 121
RTR + +++R+GRH G+GKRKGT AR+P +++W+ R+RVLRRLL KYR A KIDKHLYH
Sbjct: 61 RTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYH 120
Query: 122 QLYMKAKGNVFKNKRVLMEFI 142
LY ++KGN FK+KR L+E I
Sbjct: 121 VLYKESKGNAFKHKRALVEHI 141
>pdb|3J21|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 150
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 100/142 (70%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M++LK+Q+R+AA +++CG+ ++W+DP I+++A +R++I++LIK+G+I KKP+ SR
Sbjct: 1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
R + E ++KGRH G G RKG ARM +K LW+ +R LR+ L+K + KKID+ Y
Sbjct: 61 YRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFI 142
LY++AKG FKNK L F+
Sbjct: 121 RMLYIRAKGGQFKNKHQLYLFL 142
>pdb|3OW2|O Chain O, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 143
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 75/142 (52%)
Query: 2 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRA 61
+ L QKRLAA V+ GK +VW +P +IA +R+++R+L+ +G I K +SR
Sbjct: 1 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62 RTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYH 121
R R+ ++ R KG G G RKG A AR K W +R+R R L++ R + Y
Sbjct: 61 RARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 QLYMKAKGNVFKNKRVLMEFIH 143
LY KA G F + L +I
Sbjct: 121 DLYDKAGGGEFDSVADLERYID 142
>pdb|1FFK|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1JJ2|O Chain O, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|O Chain O, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|Q Chain Q, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|Q Chain Q, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|Q Chain Q, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|Q Chain Q, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|Q Chain Q, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|Q Chain Q, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|Q Chain Q, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|Q Chain Q, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|Q Chain Q, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|Q Chain Q, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|Q Chain Q, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|Q Chain Q, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|Q Chain Q, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|O Chain O, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|O Chain O, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|O Chain O, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|3CXC|O Chain O, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
Length = 148
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%)
Query: 2 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRA 61
+ L QKRLAA V+ GK +VW +P +IA +R+++R+L+ +G I K +SR
Sbjct: 1 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62 RTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYH 121
R R+ ++ R KG G G RKG A AR K W +R+R R L++ R + Y
Sbjct: 61 RARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 QLYMKAKGNVFKNKRVLMEFI 142
LY KA G F + L +I
Sbjct: 121 DLYDKAGGGEFDSVADLERYI 141
>pdb|1S72|P Chain P, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|P Chain P, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|P Chain P, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|P Chain P, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|P Chain P, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|P Chain P, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|P Chain P, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|P Chain P, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|P Chain P, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|P Chain P, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|P Chain P, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|P Chain P, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|P Chain P, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|P Chain P, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|P Chain P, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|P Chain P, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|P Chain P, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|P Chain P, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|P Chain P, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|P Chain P, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|P Chain P, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|P Chain P, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|P Chain P, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|P Chain P, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|P Chain P, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|P Chain P, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|O Chain O, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|P Chain P, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|P Chain P, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|P Chain P, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|P Chain P, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|P Chain P, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|P Chain P, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 149
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 75/142 (52%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M+ L QKRLAA V+ GK +VW +P +IA +R+++R+L+ +G I K +SR
Sbjct: 1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
R R+ ++ R G G G RKG A AR K W +R+R R L++ R + Y
Sbjct: 61 GRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFI 142
LY KA G F + L +I
Sbjct: 121 RDLYDKAGGGEFDSVADLERYI 142
>pdb|3G4S|P Chain P, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|P Chain P, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|P Chain P, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
Length = 143
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 74/142 (52%)
Query: 2 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRA 61
+ L QKRLAA V+ GK +VW +P +IA +R+++R+L+ +G I K +SR
Sbjct: 1 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62 RTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYH 121
R R+ ++ R G G G RKG A AR K W +R+R R L++ R + Y
Sbjct: 61 RARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 QLYMKAKGNVFKNKRVLMEFIH 143
LY KA G F + L +I
Sbjct: 121 DLYDKAGGGEFDSVADLERYID 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,422,677
Number of Sequences: 62578
Number of extensions: 148285
Number of successful extensions: 356
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 14
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)