Query psy17505
Match_columns 199
No_of_seqs 156 out of 295
Neff 3.9
Searched_HMMs 29240
Date Sat Aug 17 00:17:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_R 60S ribosomal protein L 100.0 3.1E-90 1.1E-94 580.9 16.8 188 1-188 1-188 (189)
2 4a1a_O RPL19, 60S ribosomal pr 100.0 5.1E-88 1.7E-92 565.8 15.0 178 1-178 1-178 (185)
3 2zkr_p 60S ribosomal protein L 100.0 1.7E-87 6E-92 566.6 15.7 194 1-194 1-194 (196)
4 3iz5_T 60S ribosomal protein L 100.0 6.2E-87 2.1E-91 566.9 19.0 179 1-179 1-179 (209)
5 4a17_O RPL19, 60S ribosomal pr 100.0 6.4E-83 2.2E-87 534.8 17.5 165 1-165 1-165 (185)
6 1vq8_P 50S ribosomal protein L 100.0 2.3E-77 7.8E-82 487.8 14.2 149 1-149 1-149 (149)
7 3j21_Q PFEL19, 50S ribosomal p 100.0 5.4E-77 1.9E-81 486.0 15.3 146 1-146 1-146 (150)
8 3jyw_P 60S ribosomal protein L 100.0 2.9E-73 1E-77 474.0 9.2 156 2-157 1-156 (176)
9 1fme_A FSD-EY peptide; beta-BE 61.5 2.8 9.6E-05 25.0 1.0 21 126-146 6-26 (28)
10 2jt1_A PEFI protein; solution 22.9 32 0.0011 24.2 1.3 38 26-63 24-67 (77)
11 2ab3_A ZNF29; zinc finger prot 22.0 34 0.0012 16.9 1.0 14 129-142 11-24 (29)
12 1ard_A Yeast transcription fac 21.7 60 0.002 15.9 2.0 15 129-143 9-23 (29)
13 1sp2_A SP1F2; zinc finger, tra 21.3 60 0.002 16.6 2.0 15 129-143 11-25 (31)
14 2m0d_A Zinc finger and BTB dom 21.1 53 0.0018 16.1 1.7 15 129-143 10-24 (30)
15 1klr_A Zinc finger Y-chromosom 20.4 51 0.0017 16.2 1.6 15 129-143 9-23 (30)
16 2cqj_A BRMS2, U3 small nucleol 20.2 72 0.0024 21.8 2.7 32 30-61 15-46 (71)
No 1
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=100.00 E-value=3.1e-90 Score=580.94 Aligned_cols=188 Identities=57% Similarity=0.937 Sum_probs=185.2
Q ss_pred CCchhhHHHHHHHHhhcCCCceecCccchhhHhhhhhhHHHHHHhhcCceeecCCCccchhhhHHhHHHHhcCcCCCCCC
Q psy17505 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGK 80 (199)
Q Consensus 1 m~~l~~QKRLAA~vL~cGk~kVWlDPne~~eI~~A~sR~~IRkLIkdG~Ii~kp~~~~Sr~R~r~~~~ak~kGRh~G~Gk 80 (199)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (189)
T 3u5e_R 1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK 80 (189)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhhCCCcccHHHHHHHHHHHhhHHHHhhhhHHHHH
Q psy17505 81 RKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAE 160 (199)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~lY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dQae 160 (199)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||+.|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (189)
T 3u5e_R 81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE 160 (189)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy17505 161 ARRQKVKEAKKRREERIQMKRQELLASY 188 (199)
Q Consensus 161 Arr~k~k~~r~rr~~r~~~kk~~~~~~~ 188 (199)
|+|++++++++++++++|+++++|+++.
T Consensus 161 a~r~k~k~~~~r~~~~~~~k~~~~~~~~ 188 (189)
T 3u5e_R 161 ARRLKNRAARDRRAQRVAEKRDALLKED 188 (189)
T ss_dssp HHHHHHHHHHHHHHHTTTSSTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998763
No 2
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O
Probab=100.00 E-value=5.1e-88 Score=565.79 Aligned_cols=178 Identities=61% Similarity=0.992 Sum_probs=145.8
Q ss_pred CCchhhHHHHHHHHhhcCCCceecCccchhhHhhhhhhHHHHHHhhcCceeecCCCccchhhhHHhHHHHhcCcCCCCCC
Q psy17505 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGK 80 (199)
Q Consensus 1 m~~l~~QKRLAA~vL~cGk~kVWlDPne~~eI~~A~sR~~IRkLIkdG~Ii~kp~~~~Sr~R~r~~~~ak~kGRh~G~Gk 80 (199)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a1a_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhhCCCcccHHHHHHHHHHHhhHHHHhhhhHHHHH
Q psy17505 81 RKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAE 160 (199)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~lY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dQae 160 (199)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (185)
T 4a1a_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred cccchhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHH
Q psy17505 161 ARRQKVKEAKKRREERIQ 178 (199)
Q Consensus 161 Arr~k~k~~r~rr~~r~~ 178 (199)
|+|+|++++++++++++|
T Consensus 161 a~r~k~k~~r~~~~~~~~ 178 (185)
T 4a1a_O 161 ARRAKNTASRAKRNEKAQ 178 (185)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 999999999999999887
No 3
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.7e-87 Score=566.60 Aligned_cols=194 Identities=73% Similarity=1.139 Sum_probs=158.0
Q ss_pred CCchhhHHHHHHHHhhcCCCceecCccchhhHhhhhhhHHHHHHhhcCceeecCCCccchhhhHHhHHHHhcCcCCCCCC
Q psy17505 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGK 80 (199)
Q Consensus 1 m~~l~~QKRLAA~vL~cGk~kVWlDPne~~eI~~A~sR~~IRkLIkdG~Ii~kp~~~~Sr~R~r~~~~ak~kGRh~G~Gk 80 (199)
|++|++|+||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+||||
T Consensus 1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (196)
T 2zkr_p 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK 80 (196)
T ss_dssp --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred CcchHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhhCCCcccHHHHHHHHHHHhhHHHHhhhhHHHHH
Q psy17505 81 RKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAE 160 (199)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~lY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dQae 160 (199)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|||++++++|+||||
T Consensus 81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e 160 (196)
T 2zkr_p 81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160 (196)
T ss_dssp ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHhhH
Q psy17505 161 ARRQKVKEAKKRREERIQMKRQELLASYAREDEK 194 (199)
Q Consensus 161 Arr~k~k~~r~rr~~r~~~kk~~~~~~~~~~~e~ 194 (199)
|+|++++++++++++++++++++|+.+++.++|+
T Consensus 161 a~r~k~k~~r~~r~~~~~~~~~~~~~~~~~~~~~ 194 (196)
T 2zkr_p 161 ARRSKTKEARKRREERLQAKKEEIIKTLSKEEET 194 (196)
T ss_dssp HHHTTTHHHHHHHHHHHHHHTTHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9999999999999999999999999999888765
No 4
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=100.00 E-value=6.2e-87 Score=566.88 Aligned_cols=179 Identities=68% Similarity=1.097 Sum_probs=176.7
Q ss_pred CCchhhHHHHHHHHhhcCCCceecCccchhhHhhhhhhHHHHHHhhcCceeecCCCccchhhhHHhHHHHhcCcCCCCCC
Q psy17505 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGK 80 (199)
Q Consensus 1 m~~l~~QKRLAA~vL~cGk~kVWlDPne~~eI~~A~sR~~IRkLIkdG~Ii~kp~~~~Sr~R~r~~~~ak~kGRh~G~Gk 80 (199)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~AnsRq~IRkLIkdGlIi~Kpv~~hSR~R~r~~~~ar~kGRh~G~Gk 80 (209)
T 3iz5_T 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGK 80 (209)
T ss_dssp CCCCHHHHHHHHHHHTSCTTTEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCHHHHHHHHHTTSSCCSCSSSS
T ss_pred CcchHHHHHHHHHHhCCCCCeeccChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhhCCCcccHHHHHHHHHHHhhHHHHhhhhHHHHH
Q psy17505 81 RKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAE 160 (199)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~lY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dQae 160 (199)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~KaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dqae 160 (209)
T 3iz5_T 81 RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
T ss_dssp SCSCTTTTCCSHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHTTCCCSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q psy17505 161 ARRQKVKEAKKRREERIQM 179 (199)
Q Consensus 161 Arr~k~k~~r~rr~~r~~~ 179 (199)
|+|+|+++++++++++.++
T Consensus 161 Arr~k~k~~r~rr~~r~~~ 179 (209)
T 3iz5_T 161 AKRAKSKASRERKIARREE 179 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999443
No 5
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=100.00 E-value=6.4e-83 Score=534.75 Aligned_cols=165 Identities=59% Similarity=0.961 Sum_probs=161.9
Q ss_pred CCchhhHHHHHHHHhhcCCCceecCccchhhHhhhhhhHHHHHHhhcCceeecCCCccchhhhHHhHHHHhcCcCCCCCC
Q psy17505 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGK 80 (199)
Q Consensus 1 m~~l~~QKRLAA~vL~cGk~kVWlDPne~~eI~~A~sR~~IRkLIkdG~Ii~kp~~~~Sr~R~r~~~~ak~kGRh~G~Gk 80 (199)
|++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a17_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhhCCCcccHHHHHHHHHHHhhHHHHhhhhHHHHH
Q psy17505 81 RKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAE 160 (199)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~lY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dQae 160 (199)
|+||+|||||+|++||+|||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||+.|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae 160 (185)
T 4a17_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy17505 161 ARRQK 165 (199)
Q Consensus 161 Arr~k 165 (199)
|.-.-
T Consensus 161 a~~~~ 165 (185)
T 4a17_O 161 XXXXX 165 (185)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 97543
No 6
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=100.00 E-value=2.3e-77 Score=487.80 Aligned_cols=149 Identities=35% Similarity=0.585 Sum_probs=142.7
Q ss_pred CCchhhHHHHHHHHhhcCCCceecCccchhhHhhhhhhHHHHHHhhcCceeecCCCccchhhhHHhHHHHhcCcCCCCCC
Q psy17505 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGK 80 (199)
Q Consensus 1 m~~l~~QKRLAA~vL~cGk~kVWlDPne~~eI~~A~sR~~IRkLIkdG~Ii~kp~~~~Sr~R~r~~~~ak~kGRh~G~Gk 80 (199)
|++|++|+||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||+||+++++++++|||+||||
T Consensus 1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (149)
T 1vq8_P 1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS 80 (149)
T ss_dssp -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhhCCCcccHHHHHHHHHHHhhHH
Q psy17505 81 RKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEK 149 (199)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~lY~kaKGn~Fknk~~L~e~I~k~Kae~ 149 (199)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|+||||+.++|+
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~ 149 (149)
T 1vq8_P 81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA 149 (149)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 7
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.4e-77 Score=486.03 Aligned_cols=146 Identities=44% Similarity=0.853 Sum_probs=144.3
Q ss_pred CCchhhHHHHHHHHhhcCCCceecCccchhhHhhhhhhHHHHHHhhcCceeecCCCccchhhhHHhHHHHhcCcCCCCCC
Q psy17505 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGK 80 (199)
Q Consensus 1 m~~l~~QKRLAA~vL~cGk~kVWlDPne~~eI~~A~sR~~IRkLIkdG~Ii~kp~~~~Sr~R~r~~~~ak~kGRh~G~Gk 80 (199)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (150)
T 3j21_Q 1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS 80 (150)
T ss_dssp CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred CcchHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhhCCCcccHHHHHHHHHHHh
Q psy17505 81 RKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKK 146 (199)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~lY~kaKGn~Fknk~~L~e~I~k~K 146 (199)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+|||+...
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~ 146 (150)
T 3j21_Q 81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHG 146 (150)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHS
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999753
No 8
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=2.9e-73 Score=474.05 Aligned_cols=156 Identities=58% Similarity=0.953 Sum_probs=152.3
Q ss_pred CchhhHHHHHHHHhhcCCCceecCccchhhHhhhhhhHHHHHHhhcCceeecCCCccchhhhHHhHHHHhcCcCCCCCCc
Q psy17505 2 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGKR 81 (199)
Q Consensus 2 ~~l~~QKRLAA~vL~cGk~kVWlDPne~~eI~~A~sR~~IRkLIkdG~Ii~kp~~~~Sr~R~r~~~~ak~kGRh~G~GkR 81 (199)
++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+|||++++++++|||+|+|+|
T Consensus 1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR 80 (176)
T 3jyw_P 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR 80 (176)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred CCcHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhhCCCcccHHHHHHHHHHHhhHHHHhhhhHH
Q psy17505 82 KGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSD 157 (199)
Q Consensus 82 kGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~lY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~d 157 (199)
+||+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+++|++|||++|+|+++....+.
T Consensus 81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~ 156 (176)
T 3jyw_P 81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAA 156 (176)
T ss_dssp SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGG
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999765443
No 9
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=61.46 E-value=2.8 Score=25.01 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=18.5
Q ss_pred hhhCCCcccHHHHHHHHHHHh
Q psy17505 126 KAKGNVFKNKRVLMEFIHKKK 146 (199)
Q Consensus 126 kaKGn~Fknk~~L~e~I~k~K 146 (199)
+-||-.|+|-..|.++|.+-|
T Consensus 6 kykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHCC
T ss_pred hhcccccccHHHHHHHHHHhc
Confidence 568999999999999998765
No 10
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=22.88 E-value=32 Score=24.19 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=26.4
Q ss_pred ccchhhHhhh------hhhHHHHHHhhcCceeecCCCccchhhh
Q psy17505 26 PNEINEIAIT------NSRQNIRKLIKDGLIIKKPVAVHSRART 63 (199)
Q Consensus 26 Pne~~eI~~A------~sR~~IRkLIkdG~Ii~kp~~~~Sr~R~ 63 (199)
|=-+.||+++ .-|.++..|.+.|+|.+-|..-.++.++
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~ 67 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLW 67 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHH
Confidence 4445555543 3488889999999999998655555443
No 11
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=22.02 E-value=34 Score=16.92 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=12.2
Q ss_pred CCCcccHHHHHHHH
Q psy17505 129 GNVFKNKRVLMEFI 142 (199)
Q Consensus 129 Gn~Fknk~~L~e~I 142 (199)
|..|.+.+.|..|+
T Consensus 11 ~k~f~~~~~l~~H~ 24 (29)
T 2ab3_A 11 GRSFNDRRKLNRHK 24 (29)
T ss_dssp CEEESSHHHHHHHH
T ss_pred cCccCCHHHHHHHH
Confidence 67899999999985
No 12
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.67 E-value=60 Score=15.89 Aligned_cols=15 Identities=13% Similarity=0.199 Sum_probs=13.1
Q ss_pred CCCcccHHHHHHHHH
Q psy17505 129 GNVFKNKRVLMEFIH 143 (199)
Q Consensus 129 Gn~Fknk~~L~e~I~ 143 (199)
|..|.+...|..|+.
T Consensus 9 ~~~f~~~~~l~~H~~ 23 (29)
T 1ard_A 9 TRAFARQEHLKRHYR 23 (29)
T ss_dssp CCBCSSHHHHHHHHH
T ss_pred CcccCCHHHHHHHHH
Confidence 778999999999964
No 13
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=21.27 E-value=60 Score=16.55 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=13.0
Q ss_pred CCCcccHHHHHHHHH
Q psy17505 129 GNVFKNKRVLMEFIH 143 (199)
Q Consensus 129 Gn~Fknk~~L~e~I~ 143 (199)
|-.|.+...|..|+.
T Consensus 11 ~k~f~~~~~L~~H~~ 25 (31)
T 1sp2_A 11 GKRFTRSDELQRHKR 25 (31)
T ss_dssp CCBCSSHHHHHHHHT
T ss_pred CcccCCHhHHHHHHH
Confidence 778999999999963
No 14
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.06 E-value=53 Score=16.10 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=12.9
Q ss_pred CCCcccHHHHHHHHH
Q psy17505 129 GNVFKNKRVLMEFIH 143 (199)
Q Consensus 129 Gn~Fknk~~L~e~I~ 143 (199)
|..|.+...|..|+.
T Consensus 10 ~~~f~~~~~l~~H~~ 24 (30)
T 2m0d_A 10 GRSFSDPTSKMRHLE 24 (30)
T ss_dssp CCEESCHHHHHHHHH
T ss_pred CcccCCHHHHHHHHH
Confidence 678999999999864
No 15
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.40 E-value=51 Score=16.18 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=12.9
Q ss_pred CCCcccHHHHHHHHH
Q psy17505 129 GNVFKNKRVLMEFIH 143 (199)
Q Consensus 129 Gn~Fknk~~L~e~I~ 143 (199)
|..|.+.+.|..|+.
T Consensus 9 ~k~f~~~~~l~~H~~ 23 (30)
T 1klr_A 9 EFRSADSSNLKTHIK 23 (30)
T ss_dssp SCCCSCSHHHHHHHH
T ss_pred CCccCCHHHHHHHHH
Confidence 678999999999964
No 16
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.20 E-value=72 Score=21.81 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=24.7
Q ss_pred hhHhhhhhhHHHHHHhhcCceeecCCCccchh
Q psy17505 30 NEIAITNSRQNIRKLIKDGLIIKKPVAVHSRA 61 (199)
Q Consensus 30 ~eI~~A~sR~~IRkLIkdG~Ii~kp~~~~Sr~ 61 (199)
-+...|.||..-+.||..|.|......+...+
T Consensus 15 ~~~gla~SR~~A~~lI~~G~V~Vng~~v~kps 46 (71)
T 2cqj_A 15 LKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPA 46 (71)
T ss_dssp HHTTCSSSHHHHHHHHHTTCEEETTBCCCCTT
T ss_pred HHhCCcCCHHHHHHHHHCCcEEECCEEECCCC
Confidence 34456789999999999999988777665443
Done!