RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17505
(199 letters)
>gnl|CDD|238705 cd01417, Ribosomal_L19e_E, Ribosomal protein L19e, eukaryotic.
L19e is found in the large ribosomal subunit of
eukaryotes and archaea. L19e is distinct from the
ribosomal subunit L19, which is found in prokaryotes. It
consists of two small globular domains connected by an
extended segment. It is located toward the surface of
the large subunit, with one exposed end involved in
forming the intersubunit bridge with the small subunit.
The other exposed end is involved in forming the
translocon binding site, along with L22, L23, L24, L29,
and L31e subunits.
Length = 164
Score = 228 bits (583), Expect = 3e-77
Identities = 130/164 (79%), Positives = 148/164 (90%)
Query: 4 LKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRART 63
L+LQKRLAASV++CGK+KVWLDPNEI+EI+ NSRQ+IRKLIKDGLIIKKPV VHSR+R
Sbjct: 1 LRLQKRLAASVLKCGKRKVWLDPNEISEISNANSRQSIRKLIKDGLIIKKPVKVHSRSRA 60
Query: 64 RKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQL 123
RK EA+RKGRH G+GKRKGTANARMP K+LW+ R RVLRRLLKKYR++KKIDKHLYH+L
Sbjct: 61 RKRHEAKRKGRHMGYGKRKGTANARMPSKVLWMRRQRVLRRLLKKYRESKKIDKHLYHEL 120
Query: 124 YMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVK 167
Y+KAKGNVFKNKRVLME IHK KAEK+R K L+DQAEARR K K
Sbjct: 121 YLKAKGNVFKNKRVLMEHIHKAKAEKAREKELADQAEARRAKNK 164
>gnl|CDD|185443 PTZ00097, PTZ00097, 60S ribosomal protein L19; Provisional.
Length = 175
Score = 214 bits (546), Expect = 2e-71
Identities = 115/174 (66%), Positives = 143/174 (82%)
Query: 3 SLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRAR 62
+L+LQKRLAASV++CGK +VWLDPNE +EI++ NSR +IRKLIKDGLII+KPVAVHSRAR
Sbjct: 1 NLRLQKRLAASVLKCGKNRVWLDPNEASEISLANSRFSIRKLIKDGLIIRKPVAVHSRAR 60
Query: 63 TRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQ 122
R+ EA+RKGRH G GKR+GT ARMP K+LW+ R RVLRRLL+KYR AKKID+H+YH+
Sbjct: 61 ARRFHEAKRKGRHTGIGKRRGTREARMPTKVLWMRRQRVLRRLLRKYRAAKKIDRHMYHE 120
Query: 123 LYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREER 176
Y+K+KGN FKNKRVL+E IHK K EK + K + DQ EARR K K + +R+ +
Sbjct: 121 FYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEARRAKAKALRNKRKAK 174
>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.
Length = 148
Score = 195 bits (497), Expect = 2e-64
Identities = 99/148 (66%), Positives = 113/148 (76%)
Query: 2 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRA 61
LKLQKRLAA V+ CGK +VW+DPNE+ EIA +R++IRKLIKDGLIIKKP HSR
Sbjct: 1 MDLKLQKRLAADVLGCGKNRVWIDPNELEEIADAITREDIRKLIKDGLIIKKPKKGHSRG 60
Query: 62 RTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYH 121
R RK KE RRKGRH G G RKGT ARMP+K LW+ R+R LRRLL++ R A KIDKH Y
Sbjct: 61 RARKRKEKRRKGRHRGPGSRKGTKGARMPKKELWIRRIRALRRLLRELRDAGKIDKHTYR 120
Query: 122 QLYMKAKGNVFKNKRVLMEFIHKKKAEK 149
+LY KAKG VFKNK L E+IHK KAEK
Sbjct: 121 ELYRKAKGGVFKNKAHLKEYIHKAKAEK 148
>gnl|CDD|238268 cd00481, Ribosomal_L19e, Ribosomal protein L19e. L19e is found in
the large ribosomal subunit of eukaryotes and archaea.
L19e is distinct from the ribosomal subunit L19, which
is found in prokaryotes. It consists of two small
globular domains connected by an extended segment. It is
located toward the surface of the large subunit, with
one exposed end involved in forming the intersubunit
bridge with the small subunit. The other exposed end is
involved in forming the translocon binding site, along
with L22, L23, L24, L29, and L31e subunits.
Length = 145
Score = 193 bits (493), Expect = 8e-64
Identities = 100/145 (68%), Positives = 116/145 (80%)
Query: 4 LKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRART 63
L+LQKRLAA +++CGK +VW+DPNE+ EIA N+R++IRKLIKDGLIIKKP HSR R
Sbjct: 1 LRLQKRLAADILKCGKNRVWIDPNELEEIANANTREDIRKLIKDGLIIKKPKKGHSRGRA 60
Query: 64 RKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQL 123
RK EARRKGRH G G RKGT ARMP K LW+ R+R LRRLLKK R + KIDKH Y +L
Sbjct: 61 RKRHEARRKGRHRGPGSRKGTKGARMPSKELWIRRIRALRRLLKKLRDSGKIDKHTYREL 120
Query: 124 YMKAKGNVFKNKRVLMEFIHKKKAE 148
Y+KAKGNVFKNKR L E+IHK KAE
Sbjct: 121 YLKAKGNVFKNKRHLKEYIHKAKAE 145
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 156 bits (394), Expect = 2e-46
Identities = 111/196 (56%), Positives = 148/196 (75%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M SLKLQ RLAA ++RCG+ +VWLDPNE +EI+ NSR+++RKLIKDGLII+KPV VHSR
Sbjct: 1 MVSLKLQARLAADILRCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLIIRKPVKVHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+R R KEA+ GRH G G+R+GT ARMP K LW+ R+R+LRRLL+KYR+ KKID+H+Y
Sbjct: 61 SRWRHMKEAKSMGRHEGAGRREGTREARMPSKELWMRRLRILRRLLRKYREEKKIDRHIY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMK 180
+LY+KAKGNVF+NKR LME IHK K EK + + L++Q A+R K ++ + + ++ K
Sbjct: 121 RELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRK 180
Query: 181 RQELLASYAREDEKAA 196
R++ RED AA
Sbjct: 181 REKDRERARREDAAAA 196
>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal
structure and biogenesis].
Length = 150
Score = 148 bits (377), Expect = 4e-46
Identities = 77/149 (51%), Positives = 97/149 (65%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
MS+L+ QKRLAA ++ G+ +VW+DPNEI EIA +R++IR LIKDG+I KP SR
Sbjct: 1 MSNLRTQKRLAADILGVGENRVWIDPNEIEEIASAITREDIRALIKDGVIKAKPKKGISR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
R RK ++KGR G G RKGT ARMP K W+ R+R LRR L+K R KIDKH Y
Sbjct: 61 GRARKRHAQKKKGRRRGPGSRKGTKGARMPSKERWIKRIRALRRELRKLRDDGKIDKHTY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEK 149
+LY AKG FK+K L +I + K K
Sbjct: 121 RKLYRMAKGGAFKSKSHLKSYIEEAKLLK 149
>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed.
Length = 150
Score = 130 bits (329), Expect = 6e-39
Identities = 65/149 (43%), Positives = 91/149 (61%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M L QKRLAA ++ G +VW+DP + ++A +R++IR+LIK+G+I KP SR
Sbjct: 1 MMDLSAQKRLAADILGVGVSRVWIDPEALEDVAEAITREDIRELIKEGVIKAKPKKGISR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
R R+ E R+KGR G G RKG AR P+K W+NR+R LRR L++ R KID+ Y
Sbjct: 61 GRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDRKTY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEK 149
+LY KAKG F++ L +I + K
Sbjct: 121 RKLYRKAKGGEFRSVSHLKTYIEEHGLLK 149
>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal. L19e
is found in the large ribosomal subunit of eukaryotes
and archaea. L19e is distinct from the ribosomal subunit
L19, which is found in prokaryotes. It consists of two
small globular domains connected by an extended segment.
It is located toward the surface of the large subunit,
with one exposed end involved in forming the
intersubunit bridge with the small subunit. The other
exposed end is involved in forming the translocon
binding site, along with L22, L23, L24, L29, and L31e
subunits.
Length = 145
Score = 112 bits (281), Expect = 1e-31
Identities = 61/139 (43%), Positives = 84/139 (60%)
Query: 4 LKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRART 63
L Q+RLAA ++ G +VW+DP + E+A +R +IR LIK+G+I KP SR R
Sbjct: 1 LSSQRRLAADILGVGINRVWIDPERLEEVAEAITRDDIRALIKEGVIKAKPKKGISRGRL 60
Query: 64 RKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQL 123
++ E R+KGR G G RKG AR P+K W+ +R LRR LK+ R KIDK Y +L
Sbjct: 61 KERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTYRKL 120
Query: 124 YMKAKGNVFKNKRVLMEFI 142
Y KAKG F++ L ++
Sbjct: 121 YRKAKGGSFRSLSHLKSYL 139
>gnl|CDD|240521 cd13394, Syo1_like, Fungal symportin 1 (syo1) and similar proteins.
This family of eukaryotic proteins includes
Saccharomyces cerevisiae Ydl063c and Chaetomium
thermophilum Syo1, which mediate the co-import of two
ribosomal proteins, Rpl5 and Rpl11 (which both interact
with 5S rRNA) into the nucleus. Import precedes their
association with rRNA and subsequent ribosome assembly
in the nucleolus. The primary structure of syo1 is a
mixture of Armadillo- (ARM, N-terminal part of syo1) and
HEAT-repeats (C-terminal part of syo1).
Length = 597
Score = 32.3 bits (74), Expect = 0.14
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 102 LRRLLKKYRQA-KKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAE 148
L +L+ K + KKIDK +L +A N L FI KK+E
Sbjct: 554 LEKLVPKLKAMFKKIDKRKDPELRERAD-EALIN---LTRFIKYKKSE 597
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.7 bits (73), Expect = 0.27
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 144 KKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQKK 199
K+K ++ KLL + + +Q +KEAKK +E I+ RQ YA +
Sbjct: 557 KEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEA 612
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 30.7 bits (70), Expect = 0.47
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 133 KNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMKRQELLASYARED 192
K + VL EF++ K+A A L +DQA ++K EA++ + E + +++ L E+
Sbjct: 173 KAEEVLQEFLNSKEAV-EEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEE 231
Query: 193 EKAAQKK 199
+ ++
Sbjct: 232 QMMEAQE 238
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 29.5 bits (67), Expect = 1.2
Identities = 13/57 (22%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 144 KKKAEKSRAKLLS-DQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQKK 199
+K +K+R + A ++ +EA++++EE+ + +R+ LA + E+++ ++K
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEK 314
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 29.3 bits (67), Expect = 1.5
Identities = 9/46 (19%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 142 IHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMKRQELLAS 187
I + K + A+ L + + ++++K + +E ++ + +ELL
Sbjct: 58 IGQAKRKGEDAEALIAEVKELKEEIKALEAELDE-LEAELEELLLR 102
>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869). This
bacterial family of proteins has no known function.
Length = 131
Score = 28.0 bits (63), Expect = 2.0
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 139 MEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMKRQEL 184
+EF +KA K K + Q E +Q+V++ + +R E+ ++
Sbjct: 39 LEF-QGQKAIKEIRKQSAQQIEQIQQQVEQERAKRLEQKNQLLFQI 83
>gnl|CDD|192151 pfam08781, DP, Transcription factor DP. DP forms a heterodimer
with E2F and regulates genes involved in cell cycle
progression. The transcriptional activity of E2F is
inhibited by the retinoblastoma protein which binds to
the E2F-DP heterodimer and negatively regulates the G1-S
transition.
Length = 141
Score = 27.3 bits (61), Expect = 3.6
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 164 QKVKEAKKRREERIQMKRQEL 184
+K++E +++R ERI+ K+ +L
Sbjct: 4 EKLEEERQKRIERIEQKQAQL 24
>gnl|CDD|184062 PRK13455, PRK13455, F0F1 ATP synthase subunit B; Provisional.
Length = 184
Score = 27.5 bits (61), Expect = 4.3
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 153 KLLSDQAEARRQKVKEAKKRREERIQMKRQELLASYAR 190
+L +AE R +++EA+ REE Q LLASY R
Sbjct: 54 GMLDKRAEGIRSELEEARALREE-----AQTLLASYER 86
>gnl|CDD|164910 PHA02335, PHA02335, hypothetical protein.
Length = 118
Score = 26.7 bits (59), Expect = 5.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 96 VNRMRVLRRLLKKYRQAKKIDKHL 119
+ R + ++RL K+Y ++ HL
Sbjct: 34 LKRFKYIKRLFKRYLNTGELKTHL 57
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 27.5 bits (61), Expect = 5.0
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 144 KKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQK 198
+++ K RAKL + R +K KE ++ E I+ ++ KA Q+
Sbjct: 15 EQRERKQRAKLKLE----RERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
>gnl|CDD|221982 pfam13206, VSG_B, Trypanosomal VSG domain. This family represents
the B-type variant surface glycoproteins from
trypanosomal parasites. This family is related to
pfam00913.
Length = 253
Score = 27.1 bits (60), Expect = 6.6
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 80 KRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQL 123
TA KI W+ ++ L++ +A + K L QL
Sbjct: 207 TGYLTAGGDGLTKIPWLKKLEEAATELEEREKAAQEAKALAAQL 250
>gnl|CDD|147579 pfam05472, Ter, DNA replication terminus site-binding protein (Ter
protein). This family contains several bacterial Ter
proteins. The Ter protein specifically binds to DNA
replication terminus sites on the host and plasmid
genome and then blocks progress of the DNA replication
fork.
Length = 290
Score = 26.9 bits (60), Expect = 6.6
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 6 LQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKD-GLIIKKPVAVHSRARTR 64
L+K + V NE + I Q+I +L ++ L I++PV V A
Sbjct: 178 LEKSRQSPR------AVPPITNEQWQALIDQEYQDIARLPQEEQLRIRRPVKVQPIANIW 231
Query: 65 KNKEARRK 72
++ ++
Sbjct: 232 YAEQPKQV 239
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 27.2 bits (61), Expect = 7.1
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 133 KNKRVLMEFIHKKKAEKSRAKLLS--DQAEARRQKVKEAKKRREERIQMKRQELLASYAR 190
K +R+ E +K +K AK + +A K K+AK R +KR E L +
Sbjct: 242 KAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSR------IKRLEKLEARLA 295
Query: 191 EDEKAAQKK 199
E+ + K
Sbjct: 296 EERPVEEGK 304
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 26.4 bits (59), Expect = 7.3
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 109 YRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKE 168
+ QAK I +HL + + L I + K EK+R + +A+ K KE
Sbjct: 43 FYQAKSIKQHLAELAADLLELEAAAPRAELQAKIARYKKEKARYR---SEAKELEAKAKE 99
Query: 169 AKKRREE 175
A+ +
Sbjct: 100 AEAESDH 106
>gnl|CDD|233495 TIGR01617, arsC_related, transcriptional regulator, Spx/MgsR
family. This model represents a portion of the proteins
within the larger set covered by pfam03960. That larger
family includes a glutaredoxin-dependent arsenate
reductase (TIGR00014). Characterized members of this
family include Spx and MgsR from Bacillus subtili. Spx
is a global regulator for response to thiol-specific
oxidative stress. It interacts with RNA polymerase. MgsR
(modulator of the general stress response, also called
YqgZ) provides a second level of regulation for more
than a third of the proteins in the B. subtilis general
stress regulon controlled by Sigma-B [Regulatory
functions, DNA interactions].
Length = 117
Score = 26.2 bits (58), Expect = 7.4
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 27 NEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRART 63
N N + ++ + L +D ++++P+ V ++ R
Sbjct: 67 NTSNTFLDLSDKEALELLAEDPALLRRPLIVDTKNRL 103
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 26.8 bits (60), Expect = 8.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 158 QAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQKK 199
E ++K +EAK R E R +E A AR + A +
Sbjct: 440 AIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARA 481
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 27.1 bits (60), Expect = 8.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 148 EKSRA--KLLSDQAEARRQKVKEAKKRREERIQMK--RQELLASYAREDEKAAQ 197
EK R KL ++AE RQ +E ++R EE+ M+ R + A + EK
Sbjct: 253 EKRRELEKLAKEEAERERQA-EEQRRREEEKAAMEADRAQAKAEVEKRREKLQN 305
>gnl|CDD|219580 pfam07793, DUF1631, Protein of unknown function (DUF1631). The
members of this family are sequences derived from a
group of hypothetical proteins expressed by certain
bacterial species. The region concerned is approximately
440 amino acid residues in length.
Length = 729
Score = 26.9 bits (60), Expect = 8.8
Identities = 10/45 (22%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 137 VLMEFIHKKKAEKSRAKLLSD---QAEARRQKVKEAKKRREERIQ 178
+L EF + E+ R++L+ +AE R +++ A+++ ++ ++
Sbjct: 450 LLEEFQAFLEQERRRSELVEQRTREAEEGRARLELARQQVQQELE 494
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 26.6 bits (59), Expect = 9.0
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 147 AEKSRAKLLSDQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQ 197
A L+DQ EA+ + + A +ER++ R L + A+ ++ AQ
Sbjct: 174 ANALAQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQ 224
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 26.8 bits (59), Expect = 9.1
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 144 KKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQKK 199
KKK EK++ K L +K+K A+K + ++Q ++ + ++ EK ++K+
Sbjct: 22 KKKEEKAKEKEL--------KKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKR 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.130 0.360
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,100,759
Number of extensions: 968328
Number of successful extensions: 2658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2344
Number of HSP's successfully gapped: 328
Length of query: 199
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 107
Effective length of database: 6,857,034
Effective search space: 733702638
Effective search space used: 733702638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)