RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17505
(199 letters)
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 185 bits (470), Expect = 3e-60
Identities = 97/147 (65%), Positives = 122/147 (82%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M SL+LQKRLAASV++CG+K++WLDPNE +EI++ NSR +IRKLIKDGL++K+ +HSR
Sbjct: 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+R R EA+RKGRH G GKRKGT NARMP K+LW+ R RVLRRLL+KYR AKKIDKH Y
Sbjct: 61 SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKA 147
H+ Y+ +KGN++KNK VL+E IH KA
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKA 147
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 170 bits (432), Expect = 4e-54
Identities = 121/197 (61%), Positives = 153/197 (77%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI++ NSRQNIRKL+KDG II+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+R R+ EA++KGRH G+GKR+GT AR+P KILW+ RMRVLRRLL+KYR+AKKIDKH+Y
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMK 180
H +Y+K KGN+FKNKRVLME IHK KAEK+R K LSDQ EA+R K K +++R+ R + +
Sbjct: 121 HDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKIARREER 180
Query: 181 RQELLASYAREDEKAAQ 197
+
Sbjct: 181 LAPGPERSCTSTSGCSS 197
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 176
Score = 165 bits (420), Expect = 1e-52
Identities = 93/175 (53%), Positives = 122/175 (69%)
Query: 2 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRA 61
++L+ QKRLAASV+ GK+KVWLDPNE +EIA NSR IRKL+K+G I+KK V VHS++
Sbjct: 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKS 60
Query: 62 RTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYH 121
RTR + +++R+GRH G+GKRKGT AR+P +++W+ R+RVLRRLL KYR A KIDKHLYH
Sbjct: 61 RTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYH 120
Query: 122 QLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREER 176
LY ++KGN FK+KR L+E I A + A + A A A
Sbjct: 121 VLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 175
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P*
1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P*
1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P*
1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Length = 149
Score = 164 bits (417), Expect = 1e-52
Identities = 52/148 (35%), Positives = 76/148 (51%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M+ L QKRLAA V+ GK +VW +P +IA +R+++R+L+ +G I K +SR
Sbjct: 1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
R R+ ++ R G G G RKG A AR K W +R+R R L++ R + Y
Sbjct: 61 GRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAE 148
LY KA G F + L +I +
Sbjct: 121 RDLYDKAGGGEFDSVADLERYIDANHGD 148
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 164 bits (417), Expect = 3e-52
Identities = 108/182 (59%), Positives = 143/182 (78%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M SL+LQKRLAASV++CG+K++WLDPNE +EI++ NSR +IRKLIKDGL++K+ +HSR
Sbjct: 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+R R EA+RKGRH G GKRKGT NARMP K+LW+ R RVLRRLL+KYR AKKIDKH Y
Sbjct: 61 SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMK 180
H+ Y+ +KGN++KNK VL+E IH KA+K ++ L+ Q EARR K ++ +R E+ Q+
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTASRAKRNEKAQIV 180
Query: 181 RQ 182
+
Sbjct: 181 AK 182
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 162 bits (411), Expect = 4e-51
Identities = 141/195 (72%), Positives = 170/195 (87%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIA NSRQ IRKLIKDGLII+KPV VHSR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
AR RKN ARRKGRH G GKRKGTANARMP+K+ W+ RMR+LRRLL++YR++KKID+H+Y
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMK 180
H LY+K KGNVFKNKR+LME IHK KA+K+R KLL+DQAEARR K KEA+KRREER+Q K
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180
Query: 181 RQELLASYAREDEKA 195
++E++ + ++E+E
Sbjct: 181 KEEIIKTLSKEEETK 195
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 162 bits (410), Expect = 5e-51
Identities = 109/189 (57%), Positives = 145/189 (76%)
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSR 60
M++L+ QKRLAASV+ GK+KVWLDPNE +EIA NSR IRKL+K+G I+KK V VHS+
Sbjct: 1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSK 60
Query: 61 ARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLY 120
+RTR + +++R+GRH G+GKRKGT AR+P +++W+ R+RVLRRLL KYR A KIDKHLY
Sbjct: 61 SRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLY 120
Query: 121 HQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMK 180
H LY ++KGN FK+KR L+E I + KA+ R K L+++AEARR K + A+ RR +R+ K
Sbjct: 121 HVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEK 180
Query: 181 RQELLASYA 189
R LL A
Sbjct: 181 RDALLKEDA 189
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-05
Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 61/184 (33%)
Query: 22 VWLDPNEINEIAITNSRQNIRKLIKDGLIIKKP----VAVHSRARTRKNKEARRKGRHCG 77
+W D + + + + N KL K L+ K+P +++ S K K H
Sbjct: 395 IWFDVIKSDVMVVVN------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-- 446
Query: 78 FGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDK--------------HL-YH- 121
R ++ Y K D H+ +H
Sbjct: 447 -------------------------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 122 -QLYMKAKGNVFKNKRVLMEFIHKK-----KAEKSRAKLLSDQAEAR--RQKVKEAKKRR 173
+ + +F+ + F+ +K A + +L+ + + + + + +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 174 EERI 177
E +
Sbjct: 542 ERLV 545
Score = 39.5 bits (91), Expect = 5e-04
Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 64/240 (26%)
Query: 1 MSSLKLQKRLAASVMRC---GKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKP--- 54
MS +K ++R + + R + +++ D + ++ R ++ L+ +P
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQPYLKLRQALLELRPAKN 152
Query: 55 VAVHSRARTRKNKEARRKGRHCGFGK--------RKGTANARMPQKILWVN--------- 97
V + G GK +M KI W+N
Sbjct: 153 VLIDGVL---------------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 98 RMRVLRRLL----KKYRQAKKIDKHLYHQL---------YMKAKG---------NVFKNK 135
+ +L++LL + ++ ++ +K+K NV +N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNA 256
Query: 136 RVLMEF-IHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEK 194
+ F + K +R K ++D A + + LL Y +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 32.7 bits (75), Expect = 0.063
Identities = 17/164 (10%), Positives = 44/164 (26%), Gaps = 17/164 (10%)
Query: 42 RKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGKRKGTANARM------PQKILW 95
+ K + + + + +K+A + R G + +K
Sbjct: 756 SEQTKSDYLKRA----NELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPK 811
Query: 96 VNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLL 155
+ L + + ++ K N + +E + +
Sbjct: 812 GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALE-------KAEQEHAE 864
Query: 156 SDQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQKK 199
+ + E +RQK ++ RI K + + +
Sbjct: 865 ALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD 908
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.15
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 157 DQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQKK 199
+Q + ++ +K +E + +++L R+ E+ + K
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Score = 27.4 bits (60), Expect = 2.5
Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 144 KKKAEKSRAKL--LSDQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQKK 199
++ S+ ++A ++ ++E +R+ E+++ + R +KA ++
Sbjct: 99 QELDAASKVMEQEWREKA---KKDLEEWNQRQSEQVEKNKIN-----NRIADKAFYQQ 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.15
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 22/90 (24%)
Query: 1 MSSLK--LQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNI------RKLIKDGLIIK 52
M S+ Q+++ V + L + EI++ N +N+ + L GL +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSH---LPAGKQVEISLVNGAKNLVVSGPPQSLY--GLNL- 391
Query: 53 KPVAVHSRARTRKNKEARRKGRHCGFGKRK 82
+ ++R F +RK
Sbjct: 392 ---TLRKAKAPSGLDQSRIP-----FSERK 413
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.6 bits (64), Expect = 1.5
Identities = 25/199 (12%), Positives = 70/199 (35%), Gaps = 6/199 (3%)
Query: 4 LKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRART 63
K Q++L + + +++ + + + K+ + ++ R +
Sbjct: 812 AKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKE 871
Query: 64 RKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQL 123
R+ K + + Q+ L + R A K K ++
Sbjct: 872 RQQKAEAELKELE-QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK--KQELEEI 928
Query: 124 YMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLS---DQAEARRQKVKEAKKRREERIQMK 180
+ + + + + + +KK + + L ++ EA RQK++ K + +I+
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988
Query: 181 RQELLASYAREDEKAAQKK 199
++L + ++ ++K
Sbjct: 989 EDDILIMEDQNNKLTKERK 1007
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.8 bits (62), Expect = 3.2
Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 91 QKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKS 150
Q +L +R +++ + ++ I KH+ L K L + A++
Sbjct: 846 QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE 905
Query: 151 RAKLLSDQAEARR------------QKVKEAKKRREERIQMKRQELLASYAREDEKAAQK 198
KL + EAR K+ + +++ +E+ + + L E + +
Sbjct: 906 LKKL---KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962
Query: 199 K 199
+
Sbjct: 963 E 963
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast
structural genomics consortium, BTR28, methyltrans PSI;
2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Length = 242
Score = 26.4 bits (59), Expect = 5.4
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 100 RVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSD 157
R RR LKK + ID ++ L N + + ++ S ++S+
Sbjct: 41 RSARRFLKKVDREIDIDSLTFYPL------NKHTSPEDISGYLKPLAGGASMG-VISE 91
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 26.7 bits (60), Expect = 6.2
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 139 MEFIHKKKAEKSRAKLLSDQAEARRQKVKEA-----KKRREERIQMKRQELLASYAREDE 193
++ + E A++ A ++ +A K+ R ++ + + E +A+ EDE
Sbjct: 231 WDWQPEPVNEALNARV----AALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE 286
Query: 194 KAAQKK 199
+ +
Sbjct: 287 TLDENE 292
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 26.1 bits (57), Expect = 9.0
Identities = 8/59 (13%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 143 HKKKAEKSRAKLLSDQAEARRQKVKEA----KKRREERIQMKRQELLASYAREDEKAAQ 197
+++ K++ + E RR++ + K +R+E + +R + + + ++ +
Sbjct: 16 YRRTNFKNKGRF--SADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDE 72
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A
{Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B
2qna_B
Length = 365
Score = 26.0 bits (56), Expect = 9.4
Identities = 10/57 (17%), Positives = 25/57 (43%)
Query: 143 HKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERIQMKRQELLASYAREDEKAAQKK 199
H + ++ +Q+E RR+ ++ K +R + + R+ + + + KK
Sbjct: 30 HPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKK 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.360
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,972,155
Number of extensions: 178314
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 87
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)