RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17505
         (199 letters)



>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 143

 Score =  179 bits (456), Expect = 6e-59
 Identities = 51/142 (35%), Positives = 74/142 (52%)

Query: 2   SSLKLQKRLAASVMRCGKKKVWLDPNEINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRA 61
           + L  QKRLAA V+  GK +VW +P    +IA   +R+++R+L+ +G I  K    +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60

Query: 62  RTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYH 121
           R R+ ++ R  G   G G RKG A AR   K  W +R+R  R  L++ R    +    Y 
Sbjct: 61  RARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120

Query: 122 QLYMKAKGNVFKNKRVLMEFIH 143
            LY KA G  F +   L  +I 
Sbjct: 121 DLYDKAGGGEFDSVADLERYID 142


>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 148

 Score = 27.4 bits (61), Expect = 0.78
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 164 QKVKEAKKRREERIQMKRQEL 184
           Q ++  ++RR ERI+ K+ +L
Sbjct: 5   QNLEVERQRRLERIKQKQSQL 25


>d1ydwa2 d.81.1.5 (A:134-304) Probable oxidoreductase At4g09670
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 171

 Score = 27.7 bits (60), Expect = 0.84
 Identities = 6/73 (8%), Positives = 16/73 (21%), Gaps = 5/73 (6%)

Query: 39  QNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNR 98
             +++ + D     +   V S      +++  +       G     A             
Sbjct: 5   ALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPGLDGLGALG-----DAGWYA 59

Query: 99  MRVLRRLLKKYRQ 111
           +R           
Sbjct: 60  IRATLLANNFELP 72


>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 503

 Score = 27.8 bits (60), Expect = 0.96
 Identities = 8/56 (14%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 143 HKKKAEKSRAKLLSDQAEARRQKVKEA----KKRREERIQMKRQELLASYAREDEK 194
           +++   K++ +      E RR++  +     K +R+E +  +R  +  +   + ++
Sbjct: 5   YRRTNFKNKGRF--SADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDE 58


>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 142

 Score = 24.5 bits (53), Expect = 6.3
 Identities = 9/59 (15%), Positives = 20/59 (33%)

Query: 56  AVHSRARTRKNKEARRKGRHCGFGKRKGTANARMPQKILWVNRMRVLRRLLKKYRQAKK 114
           A  +    R+ +   +  +    G   G    + P  I       +L    ++ R+A +
Sbjct: 38  AERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFE 96


>d2fl4a1 d.108.1.1 (A:1-146) Probable spermine/spermidine
           acetyltransferase EF1086 {Enterococcus faecalis [TaxId:
           1351]}
          Length = 146

 Score = 24.6 bits (52), Expect = 6.7
 Identities = 13/64 (20%), Positives = 21/64 (32%)

Query: 81  RKGTANARMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKNKRVLME 140
            +G   A     +L +       +L             LY QL     G +  N   +ME
Sbjct: 83  GQGYGKAACRLLMLKLIEKYQTNKLYLSVYDTNSSAIRLYQQLGFVFNGELDTNGERVME 142

Query: 141 FIHK 144
           + H+
Sbjct: 143 WTHQ 146


>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium
           [TaxId: 1352]}
          Length = 307

 Score = 24.9 bits (53), Expect = 7.6
 Identities = 13/107 (12%), Positives = 27/107 (25%), Gaps = 3/107 (2%)

Query: 28  EINEIAITNSRQNIRKLIKDGLIIKKPVAVHSRARTRKNKEARRKGRHCGFGKRKGTANA 87
              + A+  +   +  LIK G    + +  H       N   +++               
Sbjct: 21  HAQQQALVQTSAYLVHLIKQG---HRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTC 77

Query: 88  RMPQKILWVNRMRVLRRLLKKYRQAKKIDKHLYHQLYMKAKGNVFKN 134
               +      +             KK    +  Q+ +      FKN
Sbjct: 78  VAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKN 124


>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
           thermophilus [TaxId: 274]}
          Length = 387

 Score = 24.6 bits (53), Expect = 9.5
 Identities = 11/80 (13%), Positives = 30/80 (37%)

Query: 118 HLYHQLYMKAKGNVFKNKRVLMEFIHKKKAEKSRAKLLSDQAEARRQKVKEAKKRREERI 177
            L  +     K     ++  L     +          L  + E  R+ +++ ++ +    
Sbjct: 264 QLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLD 323

Query: 178 QMKRQELLASYAREDEKAAQ 197
           +++R+  LA    +  +AA+
Sbjct: 324 EVRREIELAERQYDLNRAAE 343


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.360 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 715,330
Number of extensions: 34511
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 40
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)