BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17506
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus
GN=Nup98 PE=1 SV=2
Length = 1816
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 128/224 (57%), Gaps = 46/224 (20%)
Query: 24 AFSSPGFGATNNS--LFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSA----- 76
AF + FG++NN+ LFG + T+ GG FG+ F SQP +TS
Sbjct: 36 AFGTSAFGSSNNTGGLFGNSQTKP------GGL------FGTSSF-SQPATSTSTGFGFG 82
Query: 77 -----TSGLFGNQQQPATNTTGGLFGASNTTFGQSKPA-FGGFGGTTSGGGLFGQ----S 126
++ LFG NT LF + N F Q+KP FG FG +TS GGLFG S
Sbjct: 83 TSTGTSNSLFG-----TANTGTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNTTS 137
Query: 127 TMFGQTNQAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVC 186
FG T + SLFG S+F AA TGTTIKF+P TGTDTM++ G S I+T+H C
Sbjct: 138 NPFGNT------SGSLFG--PSSFT-AAPTGTTIKFNPPTGTDTMVKAGVSTNISTKHQC 188
Query: 187 ITCMKEYENKSLEELRYEDYKANRKGPQQ--GTQATGSFFGTTP 228
IT MKEYE+KSLEELR EDY+ANRKGPQ G T FG++P
Sbjct: 189 ITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSP 232
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 12/67 (17%)
Query: 67 GSQPQATTSATSGLFGNQQQPATNTTGGLFGASNT----TFGQSKPAFG----GFGGTTS 118
G Q Q T+GLFG+ PAT++ GLF +S T ++GQ+K AFG GFG T+
Sbjct: 214 GPQNQVGAGTTTGLFGS--SPATSSATGLFSSSTTNSAFSYGQNKTAFGTSTTGFG--TN 269
Query: 119 GGGLFGQ 125
GGLFGQ
Sbjct: 270 PGGLFGQ 276
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98
PE=1 SV=4
Length = 1817
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 115/211 (54%), Gaps = 58/211 (27%)
Query: 61 FGSGLFGSQPQATTSATSGLFGNQQ-------------QPATNTTGG------------- 94
FG+ FGS ++ T GLFGN Q QPAT+T+ G
Sbjct: 37 FGTSAFGS-----SNNTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTL 91
Query: 95 ---------LFGASNTTFGQSKPA-FGGFGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFG 144
LF + N F Q+KP FG FG +TS GGLFG + TS+ FG
Sbjct: 92 FGTASTGTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNT----------TSNPFG 141
Query: 145 GTT-SAFGG----AAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLE 199
T+ S FG AA TGTTIKF+P TGTDTM++ G S I+T+H CIT MKEYE+KSLE
Sbjct: 142 STSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLE 201
Query: 200 ELRYEDYKANRKGPQQ--GTQATGSFFGTTP 228
ELR EDY+ANRKGPQ G T FG++P
Sbjct: 202 ELRLEDYQANRKGPQNQVGAGTTTGLFGSSP 232
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 73/163 (44%), Gaps = 65/163 (39%)
Query: 1 MFGSS---------FGQASTSS--AFGQSSFGKPAF--SSPGFGATNNSLFGQTATQAPA 47
+FGSS F ++T+S A+GQ+ K AF S+ GFG LFGQ
Sbjct: 227 LFGSSPATSSATGLFSSSTTNSGFAYGQN---KTAFGTSTTGFGTNPGGLFGQ------- 276
Query: 48 TSLFGGTQQQTTTFGSGLFGSQPQATTSATSGL-FGNQQ---QPATNTTGGLFGASNTTF 103
QQTT+ S FG QATT+ +G FGN QP+TNT GLFG +
Sbjct: 277 ------QNQQTTSLFSKPFG---QATTTQNTGFSFGNTSTIGQPSTNTM-GLFGVTQA-- 324
Query: 104 GQSKPAFGGFGGTTSGGGLFGQST-------------MFGQTN 133
S+P GGLFG +T +FGQTN
Sbjct: 325 --SQP-----------GGLFGTATNTSTGTAFGTGTGLFGQTN 354
>sp|G5EEH9|NUP98_CAEEL Nuclear pore complex protein Nup98-Nup96 OS=Caenorhabditis elegans
GN=npp-10 PE=2 SV=1
Length = 1678
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 124/246 (50%), Gaps = 51/246 (20%)
Query: 37 LFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLF 96
LFGQ A + T LFG Q + +FG+ S TS +FG+ QQP N + LF
Sbjct: 35 LFGQPANNSGTTGLFGAAQNKP---AGSIFGA-----ASNTSSIFGSPQQPQNNQSS-LF 85
Query: 97 GASNTTFGQSKPAFGGFGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFGGTTSA------F 150
G GQ+ FG T+S S++FG N GTSS+FG +A F
Sbjct: 86 GG-----GQNNANRSIFGSTSSAAP--ASSSLFG-NNANNTGTSSIFGSNNNAPSGGGLF 137
Query: 151 GGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANR 210
G + +GTT+KF P +DTMMR G++QTI+T+H+CI+ M +Y+ KS+EELR EDY ANR
Sbjct: 138 GASTVSGTTVKFEPPISSDTMMRNGTTQTISTKHMCISAMSKYDGKSIEELRVEDYIANR 197
Query: 211 KGP-------------------QQGT---------QATGSFFGTTPQPSMFGTNTSTAQP 242
K P Q G+ Q S FG S FG NTSTA
Sbjct: 198 KAPGTGTTSTGGGLFGASNTTNQAGSSGLFGSSNAQQKTSLFGGASTSSPFGGNTSTANT 257
Query: 243 ATSLFG 248
+SLFG
Sbjct: 258 GSSLFG 263
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 73/189 (38%), Gaps = 71/189 (37%)
Query: 12 SSAFGQSSFGKPAFSSPGFGAT--NNSLFGQTAT-------QAPATSLFGGTQQQTTTFG 62
SS FG ++ A S FGA +SLFG TAT Q +SLFG Q QT T G
Sbjct: 259 SSLFGNNNANTSAASGSLFGAKPAGSSLFGSTATTGASTFGQTTGSSLFGNQQPQTNTGG 318
Query: 63 S-----------------------GLFGSQPQATTSATSGL-----------FGNQQQPA 88
S GLFG Q +SG FG Q A
Sbjct: 319 SLFGNTQNQNQSGSLFGNTGTTGTGLFGQAQQQPQQQSSGFSFGGAPAATNAFG--QPAA 376
Query: 89 TNTTGGLFGASNT------------------TFGQSKP-AFGGFGGTTSGGGLFGQSTMF 129
NT G LFG ++T TFG ++P FG T +GGGLFG
Sbjct: 377 ANTGGSLFGNTSTANTGSSLFGAKPATSTGFTFGATQPTTTNAFGSTNTGGGLFG----- 431
Query: 130 GQTNQAQPG 138
N A+PG
Sbjct: 432 --NNAAKPG 438
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 71/146 (48%), Gaps = 40/146 (27%)
Query: 15 FGQSSFGKPAFSSPGFGATN----NSLFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQP 70
FG S+ A SS FG++N SLFG +T +P FGG T GS LFG+
Sbjct: 212 FGASNTTNQAGSSGLFGSSNAQQKTSLFGGASTSSP----FGGNTSTANT-GSSLFGNNN 266
Query: 71 QATTSATSGLFGNQQQPATNTTGGLFGASNTT----FGQSKPAFGGFGGTTSGGGLFGQS 126
T++A+ LFG +PA ++ LFG++ TT FGQ T+G LFG
Sbjct: 267 ANTSAASGSLFG--AKPAGSS---LFGSTATTGASTFGQ-----------TTGSSLFGNQ 310
Query: 127 --------TMFGQT-NQAQPGTSSLF 143
++FG T NQ Q G SLF
Sbjct: 311 QPQTNTGGSLFGNTQNQNQSG--SLF 334
>sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUP116 PE=1 SV=2
Length = 1113
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 78/167 (46%), Gaps = 37/167 (22%)
Query: 68 SQPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGG--GLFGQ 125
+QP +T +T G QQQP NT+ FG S T PAFG FG TS G+ G
Sbjct: 14 TQPFGSTGSTFGGQQQQQQPVANTSA--FGLSQQTNTTQAPAFGNFGNQTSNSPFGMSGS 71
Query: 126 STM----FGQTNQAQPGTS-SLFGG---TTSAFGGAAAT------GTTIK-------FSP 164
+T FGQ+ S S+FGG T+ G+A+ GT+IK P
Sbjct: 72 TTANGTPFGQSQLTNNNASGSIFGGMGNNTALSAGSASVVPNSTAGTSIKPFTTFEEKDP 131
Query: 165 VTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRK 211
TG + + ITCM EY N S EELR++DY+A RK
Sbjct: 132 TTGVINVFQ------------SITCMPEYRNFSFEELRFQDYQAGRK 166
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 74/152 (48%), Gaps = 34/152 (22%)
Query: 3 GSSFGQASTSSAFGQSSFGKPAFSSPGFGATNNSLFGQTATQAPATSLFGGTQQQTTTFG 62
G FGQ++ S AFG ++ P ++ G LFGQT Q LFG QQQ + G
Sbjct: 358 GGLFGQSAGSKAFGMNT--NPTGTTGG-------LFGQTNQQQSGGGLFG--QQQNSNAG 406
Query: 63 SGLFGSQPQATTSATSGLFGNQQQPATNT------TGGLFGASNTTFGQSKPAFGGF--- 113
GLFG Q+ SGLFG QQ ++N GGLFG SKPA G F
Sbjct: 407 -GLFGQNNQSQNQ--SGLFG--QQNSSNAFGQPQQQGGLFG--------SKPAGGLFGQQ 453
Query: 114 -GGTTSGGGLFGQSTMFGQTNQAQPGTSSLFG 144
G +T G +++FGQ NQ Q T LFG
Sbjct: 454 QGASTFASGNAQNNSIFGQNNQQQQSTGGLFG 485
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUP100 PE=1 SV=1
Length = 959
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 81/180 (45%), Gaps = 49/180 (27%)
Query: 35 NSLFGQTATQAPAT------SLFGGTQQQTTTFG-----------SGLFGSQPQATT--- 74
NSLFG T T SLFG T+ FG + LFG++P +TT
Sbjct: 416 NSLFGTTNVPTSNTQSQQGNSLFGATKLTNMPFGGNPTANQSGSGNSLFGTKPASTTGSL 475
Query: 75 ----------SATSGLFGNQQQPATNTTG-GLFGASNTTFGQSKPAFGGFGGTTSGGGLF 123
+T+GLFGN +T+TT GLFGA + QSKPA GGGLF
Sbjct: 476 FGNNTASTTVPSTNGLFGNNANNSTSTTNTGLFGAKPDS--QSKPAL--------GGGLF 525
Query: 124 GQSTMFGQT-NQAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINT 182
G S T Q +P +FGGTT G ATGT S G+ + G ++ T+N
Sbjct: 526 GNSNSNSSTIGQNKP----VFGGTTQNTGLFGATGTN---SSAVGSTGKLFGQNNNTLNV 578
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 61/137 (44%), Gaps = 29/137 (21%)
Query: 37 LFGQTATQAPATSLFGGTQQQTTTFGSG---LFGSQPQATTSATSGLFG--NQQQ----- 86
LFGQ + + +FG Q G+ LFG + SA+ GLFG NQQQ
Sbjct: 288 LFGQNSMNSSTQGVFGQNNNQMQINGNNNNSLFGKANTFSNSASGGLFGQNNQQQGSGLF 347
Query: 87 ---PATNTTGGLFGASN----TTFGQSKPAFGGFGGTTSGG----GLFGQS------TMF 129
T+ + GLFG +N TF QS G FG + GLFG ++F
Sbjct: 348 GQNSQTSGSSGLFGQNNQKQPNTFTQSNTGIGLFGQNNNQQQQSTGLFGAKPAGTTGSLF 407
Query: 130 GQTNQAQPGTSSLFGGT 146
G + QP +SLFG T
Sbjct: 408 GGNSSTQP--NSLFGTT 422
>sp|P48837|NUP57_YEAST Nucleoporin NUP57 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP57 PE=1 SV=1
Length = 541
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 20/83 (24%)
Query: 49 SLFGG--TQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGA---SNTTF 103
SL GG TQ + GLFG++PQ TT+ T GLFG++ Q +T T GGLFG+ +N T
Sbjct: 158 SLMGGNSTQNTSNMNAGGLFGAKPQNTTATTGGLFGSKPQGST-TNGGLFGSGTQNNNTL 216
Query: 104 GQSKPAFGGFGGTTSGGGLFGQS 126
G GGGLFGQS
Sbjct: 217 G--------------GGGLFGQS 225
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 75/168 (44%), Gaps = 48/168 (28%)
Query: 22 KPAFSS--------PGFGATNNSLFGQTATQAPATSLFGGT--QQQTTTFGSGLFGSQPQ 71
KPA S G AT LFGQ Q +++ GG + TTT G GLFG+ Q
Sbjct: 81 KPALGSLGSSSTTASGTTATGTGLFGQQTAQPQQSTIGGGLFGNKPTTTTG-GLFGNSAQ 139
Query: 72 ATTSATSGLFGNQ-------------QQPATNTTGGLFGAS--NTT------FGQSKPAF 110
++ + GLFGN+ Q + GGLFGA NTT FG SKP
Sbjct: 140 NNSTTSGGLFGNKVGSTGSLMGGNSTQNTSNMNAGGLFGAKPQNTTATTGGLFG-SKPQ- 197
Query: 111 GGFGGTTSGGGLFGQST----------MFGQTNQAQPGTSSLFGGTTS 148
G+T+ GGLFG T +FGQ+ Q Q T+ G T S
Sbjct: 198 ----GSTTNGGLFGSGTQNNNTLGGGGLFGQSQQPQTNTAPGLGNTVS 241
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup189 PE=1 SV=1
Length = 1778
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 67/150 (44%), Gaps = 34/150 (22%)
Query: 3 GSSFGQAS---TSSAFGQSSFGKPAFSSPGFGATN----NSLFGQTATQAPATSLFGGTQ 55
G FG AS T+SAFG S+P FGA+ +L G T P FG +
Sbjct: 224 GRRFGNASSTNTTSAFG---------STPAFGASTTPFGQNLSGTTNNATP----FGTSN 270
Query: 56 QQTTTFGSGLFGSQP------------QATTSATSGLFGNQQQPATNTTGGLFGASNTTF 103
TT GSGLFG T +A+ GLFG + + GLFG S TF
Sbjct: 271 ATNTTPGSGLFGGGSAFGSNTTNTGFGSGTNNASGGLFGQNNNTTSTPSTGLFGGS--TF 328
Query: 104 GQSKPAFGGFGGTTSGGGLFGQSTMFGQTN 133
Q KPAF GFG TT+ + +FG N
Sbjct: 329 NQQKPAFSGFGSTTNTTNTGTGTGLFGSNN 358
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 94/231 (40%), Gaps = 66/231 (28%)
Query: 50 LFGGTQQQTTTFGSGLFGSQPQATT----SATSGLFGNQQQPATNTTGGLFGASNTT--- 102
LFG + T G+ LFGSQ +TT + T LFG +NT GGLFG N T
Sbjct: 27 LFGS---NSNTPGNTLFGSQNTSTTGFGQNTTQPLFG------SNTNGGLFGNRNNTTTT 77
Query: 103 -------------FGQSK-PAFGGFGGTT--SGGGLFGQSTM-----------FGQT--- 132
FGQS PAFGG T SGGGLFG +T FG
Sbjct: 78 GGTGFGMSSGTGMFGQSNTPAFGGTNNATNPSGGGLFGSNTANNNANTGTSFSFGSNAGS 137
Query: 133 --NQAQPGTSSLFG-----GTTSAFG--------GAAATGTTIKFSPVTGTDTMMRGGSS 177
+Q LFG TT+AFG A GT VT G+S
Sbjct: 138 TGFGSQGTGGGLFGSSTTPATTNAFGTSGFVSSNANAVNGTANPPYAVTSEKDPQTNGTS 197
Query: 178 QTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTP 228
ITCM Y + S EELR +DY R+ + T S FG+TP
Sbjct: 198 -----VFQSITCMPAYRSYSFEELRLQDYNQGRRFGNASSTNTTSAFGSTP 243
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 55/109 (50%), Gaps = 21/109 (19%)
Query: 36 SLFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQP--QATTSATSGLFGNQQQPATNTTG 93
SLFG T +++FG ++T G+GLFGS AT++ +GLFG+ TNT G
Sbjct: 515 SLFGNANTAG--SNMFGSAN--SSTPGTGLFGSTQTNNATSNTGTGLFGSNNANTTNTGG 570
Query: 94 GLFGASNTTFGQSKPAFGGFGGTTSG------GGLFGQSTMFGQTNQAQ 136
LF +TT G G FG TT+ GLFG S NQAQ
Sbjct: 571 SLFNKPSTTTG------GLFGNTTAQQPSTTTSGLFGASNT---NNQAQ 610
>sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1 OS=Arabidopsis thaliana GN=UBA1
PE=1 SV=1
Length = 1080
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 24/111 (21%)
Query: 163 SPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEE------LRYEDYKANR------ 210
SPV T++MM G +Q +T + C+++ + ++ ++ LR+EDY NR
Sbjct: 693 SPVEYTNSMMSAGDAQARDTLERIVECLEKEKCETFQDCLTWARLRFEDYFVNRVKQLIY 752
Query: 211 KGPQQGTQATGSFFGTTPQ------------PSMFGTNTSTAQPATSLFGI 249
P+ +TG+ F + P+ PS+ T+TA FGI
Sbjct: 753 TFPEDAATSTGAPFWSAPKRFPRPLQYSSSDPSLLNFITATAILRAETFGI 803
>sp|Q54EQ8|NUP98_DICDI Nuclear pore complex protein Nup98-Nup96 OS=Dictyostelium
discoideum GN=nup98 PE=3 SV=1
Length = 2053
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 69/126 (54%), Gaps = 23/126 (18%)
Query: 37 LFGQTATQAPATSLFGGTQQQTTTFGSGLFGS-QPQATTSATSGLFGNQQQPATNTTGGL 95
LFG T T T LFG T T G+GLFGS QP + + LFGN ATNT GL
Sbjct: 516 LFGSTPTSG--TGLFGST----PTSGTGLFGSAQPPQNQQSQTSLFGNTGTGATNTGTGL 569
Query: 96 FGASNTTFGQSKPAFGGFGG---TTSGGGLFGQSTMFGQTNQ--AQPGTSSLFGGTTSAF 150
FG++ + S P G FG +T+ GGLFG +NQ AQP T+SLFG TT +
Sbjct: 570 FGSAQPS---SNPGGGLFGSAQPSTTTGGLFG-------SNQPTAQP-TTSLFGNTTGSV 618
Query: 151 GGAAAT 156
GG AT
Sbjct: 619 GGLGAT 624
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 30 FGATNNSLFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPAT 89
FG+ ++ FGQ + LFG Q Q T G GLFG+QP TS GLFG QP +
Sbjct: 407 FGSQTSTPFGQPQQTNTGSGLFGAQQTQQTNTGGGLFGAQPTQQTSG-GGLFGT--QPTS 463
Query: 90 NTTGGLFGASNT-----TFGQSKPAFGGFGGTTSGGGLF 123
T GLFG S T FG ++P T+ G GLF
Sbjct: 464 GT--GLFGTSPTAGGTGLFGTTQP-------TSQGTGLF 493
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 50/102 (49%), Gaps = 32/102 (31%)
Query: 74 TSATSG--LFGNQQQPATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGGGLFGQ------ 125
TSAT G LFG+ Q T+GGLFG+ T Q+ GGGLFG
Sbjct: 325 TSATPGSSLFGSTQPTQQQTSGGLFGSVQPTQQQA------------GGGLFGSMPSTGG 372
Query: 126 STMFG-------QTNQAQPGTSSLFGG----TTSAFGGAAAT 156
S++FG QT AQP T SLFGG TTS FG +T
Sbjct: 373 SSLFGSTQPTQQQTGGAQP-TQSLFGGQTQTTTSPFGSQTST 413
>sp|P40477|NU159_YEAST Nucleoporin NUP159 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP159 PE=1 SV=1
Length = 1460
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 36/161 (22%)
Query: 1 MFGS-SFGQASTSSAFGQSSFGKPAFSSPGFGATNNSLFGQTATQAPAT-SLFGGTQQQT 58
+FG +FG + + + +FGKP+F +P FG+ G+++ ++PA+ S FG T
Sbjct: 504 VFGKPAFGAIAKEPSTSEYAFGKPSFGAPSFGS------GKSSVESPASGSAFGKPSFGT 557
Query: 59 TTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASNTT---------FGQSKPA 109
+FGSG +P A+ SA FG +P+ T FG+ N++ FG KP+
Sbjct: 558 PSFGSGNSSVEPPASGSA----FG---KPSFGTPS--FGSGNSSAEPPASGSAFG--KPS 606
Query: 110 FG--GFG----GTTSGGGLFGQSTMFGQTNQAQPGTSSLFG 144
FG FG T+ G +FG++ FG ++ A P + LFG
Sbjct: 607 FGTSAFGTASSNETNSGSIFGKAA-FGSSSFA-PANNELFG 645
>sp|P49687|NU145_YEAST Nucleoporin NUP145 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP145 PE=1 SV=1
Length = 1317
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 8 QASTSSAFGQSSFGKPAFSSPG-FGATNNSLFGQTATQAPATSLFGGTQQQTTTFGS-GL 65
Q + +S FG KPA S G FGATNN+ T A SLFG + GS GL
Sbjct: 72 QPANNSLFG----NKPAQPSGGLFGATNNT------TSKSAGSLFGNNNATANSTGSTGL 121
Query: 66 F-GSQPQATTSATSGLFGNQQQPATNTT---GGLFGASNTTFGQSKPAFGGFGGTTSGGG 121
F GS A+++ GLFGN +T GGLFG TT + FG T S G
Sbjct: 122 FSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPAGAGGLFGNSSSTNSTTG 181
Query: 122 LFGQST------MFGQTNQAQPGTSS---LFGGTTSAFGGAAATGTTIKFSP 164
LFG + +FGQ +PG S+ LFG ++F + T T+ +P
Sbjct: 182 LFGSNNTQSSTGIFGQ----KPGASTTGGLFGNNGASFPRSGETTGTMSTNP 229
>sp|Q09793|NUP45_SCHPO Nucleoporin nup45 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup45 PE=1 SV=2
Length = 425
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 94/216 (43%), Gaps = 40/216 (18%)
Query: 26 SSPGFGATNNSLFGQTATQAPATSLFGGTQQQT-TTFGSGLFGSQPQA------------ 72
+S GFG FGQT Q SLFG T TT G LFG PQA
Sbjct: 44 ASTGFGGVTGGAFGQTKPQT-GGSLFGNKPNATSTTPGLNLFGQNPQAAPGGSLFGASTT 102
Query: 73 TTSATSGLFGNQ----QQPATNTTGGLFGAS--NTTFGQSKPAFGG---FGGTTSG--GG 121
A GLF Q TGGLFG S N T Q++PA FG + G GG
Sbjct: 103 KPQAPGGLFNQNQTQAQPAQAAPTGGLFGLSGQNQTQSQTQPAQANTSLFGQSNIGTTGG 162
Query: 122 LFGQS----TMFGQTNQAQPGTSSLFGGTT-----SAFGGAAATGTTIKFSPVTGTDTMM 172
LF Q+ + FGQ + QP ++ LFG +T + FG + T TT FS +
Sbjct: 163 LFDQNRPNTSTFGQFS-TQPASAGLFGQSTQPSGSTGFGLSNNTQTTPFFSAAQQQPSTT 221
Query: 173 RGGSSQTIN--TRHVCITCMKEYENKSLEELRYEDY 206
+ S+ IN TR+ + + K L++L E +
Sbjct: 222 QLPSNPAINATTRYSSLNANTQ---KFLDDLDKEIF 254
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 53/121 (43%), Gaps = 22/121 (18%)
Query: 30 FGATNNSLFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPAT 89
FG FG T TQ T GT T F S FG+ QA T A++G G
Sbjct: 2 FGLNKTPSFGSTGTQNQNT----GTSAGTGLFSSNTFGNNTQANTPASTGFGG------- 50
Query: 90 NTTGGLFGASNTTFGQSKPAFGG--FGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFGGTT 147
TGG FGQ+KP GG FG + +FGQ QA PG SLFG +T
Sbjct: 51 -VTGG-------AFGQTKPQTGGSLFGNKPNATSTTPGLNLFGQNPQAAPG-GSLFGAST 101
Query: 148 S 148
+
Sbjct: 102 T 102
>sp|Q80U93|NU214_MOUSE Nuclear pore complex protein Nup214 OS=Mus musculus GN=Nup214 PE=1
SV=2
Length = 2085
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 72/140 (51%), Gaps = 24/140 (17%)
Query: 25 FSSPGFGATNNSLFGQTAT-QAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGN 83
F SP FGA+ +FGQTA Q PA FG Q T++ SG SQP ++ FG
Sbjct: 1704 FGSPAFGASAPGVFGQTAFGQTPA---FG---QATSSPASGFSFSQPGFSSVPA---FGQ 1754
Query: 84 QQQ--PATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGGGLFGQST--MFGQTNQAQPGT 139
PA+ T+ +FGA+++T G T +GG LFGQ+ FGQ+ PG
Sbjct: 1755 SVSSTPAS-TSANVFGATSSTSSPGS-FSFGQASTNTGGTLFGQNNPPAFGQS----PG- 1807
Query: 140 SSLFGGTTSAFGGAAATGTT 159
FG +S FGG +AT +T
Sbjct: 1808 ---FGQGSSVFGGTSATTST 1824
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,495,027
Number of Sequences: 539616
Number of extensions: 4393242
Number of successful extensions: 15993
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 466
Number of HSP's that attempted gapping in prelim test: 11188
Number of HSP's gapped (non-prelim): 2484
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)