Query psy17506
Match_columns 252
No_of_seqs 169 out of 440
Neff 5.0
Searched_HMMs 46136
Date Sat Aug 17 00:18:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0845|consensus 97.6 0.0006 1.3E-08 71.4 12.1 84 149-237 114-201 (903)
2 PF13634 Nucleoporin_FG: Nucle 97.4 0.0011 2.4E-08 53.6 8.8 8 120-127 87-94 (113)
3 PF13634 Nucleoporin_FG: Nucle 97.1 0.0039 8.4E-08 50.4 8.8 63 36-98 24-92 (113)
4 KOG3091|consensus 95.9 0.093 2E-06 52.4 11.2 19 34-55 49-67 (508)
5 KOG3091|consensus 95.3 0.056 1.2E-06 53.9 7.5 55 36-99 37-92 (508)
6 KOG1428|consensus 90.3 0.076 1.6E-06 59.1 -0.3 34 182-215 2065-2098(3738)
7 PHA03354 Alkaline exonuclease; 12.6 47 0.001 25.7 -0.9 23 191-213 34-56 (81)
8 COG3786 Uncharacterized protei 11.1 1.4E+02 0.0031 27.2 1.5 32 148-179 102-133 (217)
9 KOG4144|consensus 10.3 1.4E+02 0.003 26.5 1.1 46 169-215 90-135 (190)
10 PF12944 DUF3840: Protein of u 9.0 54 0.0012 26.2 -1.7 15 185-199 59-73 (104)
No 1
>KOG0845|consensus
Probab=97.60 E-value=0.0006 Score=71.44 Aligned_cols=84 Identities=49% Similarity=0.844 Sum_probs=67.0
Q ss_pred CCCcccccCcccccCCccccCccccCCCcCccccceeeeeecccccccChhhhhhHHHHhcCCCCCCCCCCCCcccccCC
Q psy17506 149 AFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTP 228 (252)
Q Consensus 149 ~fG~~~~~GTav~f~p~~~~d~~~~~~i~~nis~~~qSIT~Mp~y~~~S~EELR~eDY~~grKg~~~g~~~~~~~fg~~~ 228 (252)
.|+.+.+.++.+ .|...+|++.+.+...++...++||..|.+|+.+++|++|.+||..+ +.+..+..-.. +||+..
T Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~fg~~~ 189 (903)
T KOG0845|consen 114 LFGSATPAGTTV--NPGFGTSTTMKFGVSNTISTKHICITAPGAYTTKGLEGLRLEDYMAG-KGPGFGSGNTG-LFGSSP 189 (903)
T ss_pred cccccccccccc--cCCccccccccccccCCccceeeeccCcccccccccccccccccccc-cCccccCCCcc-cccccc
Confidence 455445566666 88888899999999999999999999999999999999999999999 88844443334 888744
Q ss_pred ----CCCCCCCCC
Q psy17506 229 ----QPSMFGTNT 237 (252)
Q Consensus 229 ----~~~~fg~~~ 237 (252)
.. +||+..
T Consensus 190 ~~~~~~-~fg~s~ 201 (903)
T KOG0845|consen 190 ATSSST-LFGSSK 201 (903)
T ss_pred CCcccc-cccccC
Confidence 24 787764
No 2
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region
Probab=97.41 E-value=0.0011 Score=53.57 Aligned_cols=8 Identities=88% Similarity=1.485 Sum_probs=3.8
Q ss_pred CCccCCcc
Q psy17506 120 GGLFGQST 127 (252)
Q Consensus 120 gglFG~~~ 127 (252)
++|||+..
T Consensus 87 ~~lFG~~~ 94 (113)
T PF13634_consen 87 GGLFGQSQ 94 (113)
T ss_pred CcccCCCC
Confidence 34555543
No 3
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region
Probab=97.10 E-value=0.0039 Score=50.41 Aligned_cols=63 Identities=38% Similarity=0.690 Sum_probs=26.6
Q ss_pred CCccCCcc---CCCcccccccccCc-cccccccccCCCCC-CCCCcCcCCCCCCCC-CCCCCcccccCC
Q psy17506 36 SLFGQTAT---QAPATSLFGGTQQQ-TTTFGSGLFGSQPQ-ATTSATSGLFGNQQQ-PATNTTGGLFGA 98 (252)
Q Consensus 36 ~lFG~~~~---~~~~gglFG~~~~~-~~~~gfg~fg~~~~-~~~~~~~~lFG~~~~-~~~~~~gGLFG~ 98 (252)
+|||.... ....++|||+.... ......+|||.... .......+|||.... ......++|||+
T Consensus 24 ~lFG~~~~~~~~~~~~~LFG~~~~~~~~~~~~~LFG~~~~~~~~~~~~~lFG~~~~~~~~~~~~~lFG~ 92 (113)
T PF13634_consen 24 SLFGSSTPQTTSTSSGSLFGSTSTQTQATTTGGLFGSSNNTQQQPSSGSLFGSTTATQQATPSGGLFGQ 92 (113)
T ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcccCCCCCCCCcCCCCcccCC
Confidence 56665431 11235566654431 22333445553221 122334556665431 112223566664
No 4
>KOG3091|consensus
Probab=95.86 E-value=0.093 Score=52.37 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=9.2
Q ss_pred cCCCccCCccCCCccccccccc
Q psy17506 34 NNSLFGQTATQAPATSLFGGTQ 55 (252)
Q Consensus 34 ~~~lFG~~~~~~~~gglFG~~~ 55 (252)
++++||..+. .+++||...
T Consensus 49 Tt~~fG~~~~---g~~~fG~~~ 67 (508)
T KOG3091|consen 49 TTGLFGANQA---GGTGFGTAS 67 (508)
T ss_pred cccccccccC---CCCCccCCC
Confidence 3456665442 244566433
No 5
>KOG3091|consensus
Probab=95.31 E-value=0.056 Score=53.89 Aligned_cols=55 Identities=33% Similarity=0.616 Sum_probs=24.5
Q ss_pred CCccCCcc-CCCcccccccccCccccccccccCCCCCCCCCcCcCCCCCCCCCCCCCcccccCCC
Q psy17506 36 SLFGQTAT-QAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGAS 99 (252)
Q Consensus 36 ~lFG~~~~-~~~~gglFG~~~~~~~~~gfg~fg~~~~~~~~~~~~lFG~~~~~~~~~~gGLFG~~ 99 (252)
++||..+. ...+.+|||.+.. ++++||.. .. ..+.+++||...+.+ .++|+||+.
T Consensus 37 ~~fgs~p~~~taTt~~fG~~~~-----g~~~fG~~-~~-~~~~gs~~~~s~~t~--~g~g~fgs~ 92 (508)
T KOG3091|consen 37 GAFGSQPTTGTATTGLFGANQA-----GGTGFGTA-ST-GTAAGSGFGTSTATG--AGGGFFGSQ 92 (508)
T ss_pred cccccCCCCCCccccccccccC-----CCCCccCC-CC-CcccccccccCCccC--CccCccccc
Confidence 45654432 1223566774432 44455421 11 122333666543322 346777753
No 6
>KOG1428|consensus
Probab=90.27 E-value=0.076 Score=59.07 Aligned_cols=34 Identities=41% Similarity=0.574 Sum_probs=30.1
Q ss_pred cceeeeeecccccccChhhhhhHHHHhcCCCCCC
Q psy17506 182 TRHVCITCMKEYENKSLEELRYEDYKANRKGPQQ 215 (252)
Q Consensus 182 ~~~qSIT~Mp~y~~~S~EELR~eDY~~grKg~~~ 215 (252)
.+|+.|+.||.|+++|+||||+.....+|....-
T Consensus 2065 aRYiaIt~M~vYeNYS~EElRf~~~~~k~~se~m 2098 (3738)
T KOG1428|consen 2065 ARYIAITMMKVYENYSFEELRFASPTPKRPSENM 2098 (3738)
T ss_pred hhhhhhhhhhhhhcccHhhhcccCCCcccccccc
Confidence 4889999999999999999999998888877653
No 7
>PHA03354 Alkaline exonuclease; Provisional
Probab=12.64 E-value=47 Score=25.74 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=19.6
Q ss_pred ccccccChhhhhhHHHHhcCCCC
Q psy17506 191 KEYENKSLEELRYEDYKANRKGP 213 (252)
Q Consensus 191 p~y~~~S~EELR~eDY~~grKg~ 213 (252)
.+|+..++|+||..||++..|.-
T Consensus 34 ~~fD~vdLd~lr~sD~~~~~k~v 56 (81)
T PHA03354 34 ENYDTVDLDELRYSDPLEEAKIV 56 (81)
T ss_pred hhccceeccccccCCccccccEE
Confidence 57889999999999999877753
No 8
>COG3786 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=11.13 E-value=1.4e+02 Score=27.21 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCCcccccCcccccCCccccCccccCCCcCc
Q psy17506 148 SAFGGAAATGTTIKFSPVTGTDTMMRGGSSQT 179 (252)
Q Consensus 148 s~fG~~~~~GTav~f~p~~~~d~~~~~~i~~n 179 (252)
.+|++..+++|+++|.++...|--|++....+
T Consensus 102 ~~fg~~pnpgT~Lp~~~v~p~~~Wc~~~~dp~ 133 (217)
T COG3786 102 SGFGQAPNPGTKLPYTAVGPNDGWCDAPNDPN 133 (217)
T ss_pred eeeeecCCCCccceeEecCCCccccCCCCCcc
Confidence 35776667899999999998877665444333
No 9
>KOG4144|consensus
Probab=10.34 E-value=1.4e+02 Score=26.47 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=33.8
Q ss_pred CccccCCCcCccccceeeeeecccccccChhhhhhHHHHhcCCCCCC
Q psy17506 169 DTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQ 215 (252)
Q Consensus 169 d~~~~~~i~~nis~~~qSIT~Mp~y~~~S~EELR~eDY~~grKg~~~ 215 (252)
++|.+...... +..-+++..-|+|.++-...+=+.||++.+-....
T Consensus 90 ESm~kh~s~g~-ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i 135 (190)
T KOG4144|consen 90 ESMTKHRSGGH-NIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPI 135 (190)
T ss_pred HHHhhhhcCCc-ceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCcc
Confidence 44555444322 35668999999999999999999999998765543
No 10
>PF12944 DUF3840: Protein of unknown function (DUF3840)
Probab=9.04 E-value=54 Score=26.16 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=9.9
Q ss_pred eeeeecccccccChh
Q psy17506 185 VCITCMKEYENKSLE 199 (252)
Q Consensus 185 qSIT~Mp~y~~~S~E 199 (252)
.-|+++++|+..-+|
T Consensus 59 SHIEc~kpykELRle 73 (104)
T PF12944_consen 59 SHIECRKPYKELRLE 73 (104)
T ss_pred HHHHhcCchHHHhHH
Confidence 347888888854444
Done!