Query psy17506
Match_columns 252
No_of_seqs 169 out of 440
Neff 5.0
Searched_HMMs 29240
Date Sat Aug 17 00:18:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mmy_B Nuclear pore complex pr 99.8 1.4E-22 4.9E-27 143.7 2.5 56 156-211 1-56 (56)
2 2gzd_C RAB11 family-interactin 13.8 54 0.0018 25.6 0.8 8 202-209 71-78 (107)
3 2hv8_D RAB11 family-interactin 13.5 86 0.0029 22.3 1.7 8 202-209 41-48 (64)
4 4gc0_A D-xylose-proton symport 12.0 59 0.002 28.7 0.6 14 188-201 461-474 (491)
5 3tso_C RAB11 family-interactin 10.8 1.1E+02 0.0038 22.5 1.6 10 192-201 10-19 (75)
6 2d0s_A Cytochrome C, cytochrom 7.5 2.4E+02 0.0082 18.6 2.3 23 188-210 55-78 (79)
7 2lqh_B Forkhead box O3, FOXO3A 9.2 1E+02 0.0036 20.5 0.0 29 189-217 2-30 (52)
8 1etr_L Epsilon-thrombin; serin 5.5 3E+02 0.01 18.6 1.7 9 202-210 41-49 (49)
9 1mty_G Methane monooxygenase h 4.7 2.8E+02 0.0094 23.0 1.4 14 191-204 142-155 (162)
10 1mhy_G Methane monooxygenase h 4.6 2.8E+02 0.0094 23.2 1.4 14 191-204 146-159 (169)
No 1
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.85 E-value=1.4e-22 Score=143.70 Aligned_cols=56 Identities=73% Similarity=1.098 Sum_probs=49.6
Q ss_pred cCcccccCCccccCccccCCCcCccccceeeeeecccccccChhhhhhHHHHhcCC
Q psy17506 156 TGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRK 211 (252)
Q Consensus 156 ~GTav~f~p~~~~d~~~~~~i~~nis~~~qSIT~Mp~y~~~S~EELR~eDY~~grK 211 (252)
+||+|||+|+.++|+|++++.+.++.+++|||++||+|++||+|||||+||+++||
T Consensus 1 ~gt~vkf~p~~~tdt~~~~g~~~~~~~~~qsIs~M~~Y~~~S~EELR~eDY~~grk 56 (56)
T 3mmy_B 1 TGTTIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK 56 (56)
T ss_dssp CCSCSCCCCCEEEEEC-----CCEEEEEECCGGGSTTTTTSCHHHHHHHHHHTTCC
T ss_pred CCccccccccccccchhhcCCCCccceeEEEEecchhhhcCCHHHHHHHHHHccCC
Confidence 58999999999999999999999999999999999999999999999999999998
No 2
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=13.82 E-value=54 Score=25.64 Aligned_cols=8 Identities=50% Similarity=0.746 Sum_probs=5.8
Q ss_pred hhHHHHhc
Q psy17506 202 RYEDYKAN 209 (252)
Q Consensus 202 R~eDY~~g 209 (252)
.+|||+++
T Consensus 71 ELEDYID~ 78 (107)
T 2gzd_C 71 ELEDYIDN 78 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67888753
No 3
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=13.45 E-value=86 Score=22.30 Aligned_cols=8 Identities=38% Similarity=0.700 Sum_probs=5.8
Q ss_pred hhHHHHhc
Q psy17506 202 RYEDYKAN 209 (252)
Q Consensus 202 R~eDY~~g 209 (252)
|++||+++
T Consensus 41 ~Le~YID~ 48 (64)
T 2hv8_D 41 RLQDYIDR 48 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78888753
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=11.95 E-value=59 Score=28.72 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=11.8
Q ss_pred eecccccccChhhh
Q psy17506 188 TCMKEYENKSLEEL 201 (252)
Q Consensus 188 T~Mp~y~~~S~EEL 201 (252)
-.+||-+.+++||+
T Consensus 461 ~~~PETkg~tLeei 474 (491)
T 4gc0_A 461 KFVPETKGKTLEEL 474 (491)
T ss_dssp HHCCCCTTCCHHHH
T ss_pred heecCCCCCCHHHH
Confidence 35699999999985
No 5
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=10.76 E-value=1.1e+02 Score=22.47 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=4.8
Q ss_pred cccccChhhh
Q psy17506 192 EYENKSLEEL 201 (252)
Q Consensus 192 ~y~~~S~EEL 201 (252)
+|..++.|||
T Consensus 10 ~y~~ltreEL 19 (75)
T 3tso_C 10 GYRSLTYEEV 19 (75)
T ss_dssp --CCCCHHHH
T ss_pred HHhcCCHHHH
Confidence 5566666654
No 6
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=7.47 E-value=2.4e+02 Score=18.60 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=15.7
Q ss_pred eecccccccChhhh-hhHHHHhcC
Q psy17506 188 TCMKEYENKSLEEL-RYEDYKANR 210 (252)
Q Consensus 188 T~Mp~y~~~S~EEL-R~eDY~~gr 210 (252)
..||.+...|-||+ .+-+|+...
T Consensus 55 ~~Mp~~~~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 55 VPMPPHPQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp SCBCCCTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC
Confidence 45998867777775 456677544
No 7
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=9.17 E-value=1e+02 Score=20.49 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=21.6
Q ss_pred ecccccccChhhhhhHHHHhcCCCCCCCC
Q psy17506 189 CMKEYENKSLEELRYEDYKANRKGPQQGT 217 (252)
Q Consensus 189 ~Mp~y~~~S~EELR~eDY~~grKg~~~g~ 217 (252)
.|..|.+..+.+|-..|-+.-..+++.|+
T Consensus 2 smshygnqtlqdlltsdslshsdgggsgg 30 (52)
T 2lqh_B 2 SMSHYGNQTLQDLLTSDSLSHSDGGGSGG 30 (52)
Confidence 36778888888888888887777776643
No 8
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=5.47 E-value=3e+02 Score=18.56 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=6.9
Q ss_pred hhHHHHhcC
Q psy17506 202 RYEDYKANR 210 (252)
Q Consensus 202 R~eDY~~gr 210 (252)
-+++|+.+|
T Consensus 41 LleSY~~gR 49 (49)
T 1etr_L 41 LFESYIEGR 49 (49)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHhccC
Confidence 378898876
No 9
>1mty_G Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.23.3.1 PDB: 1mmo_G 1xmg_E 1xmf_E 1xmh_E 1xvb_E 1fyz_E 1fz0_E 1fz2_E 1fz3_E 1fz4_E 1fz5_E 1fz6_E 1fz7_E 1fz8_E 1fz9_E 1fzh_E 1fzi_E 1xu3_E 1xu5_E 1fz1_E ...
Probab=4.65 E-value=2.8e+02 Score=23.03 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=12.1
Q ss_pred ccccccChhhhhhH
Q psy17506 191 KEYENKSLEELRYE 204 (252)
Q Consensus 191 p~y~~~S~EELR~e 204 (252)
+.|-..++||||.+
T Consensus 142 ~dYy~~pLeeLRk~ 155 (162)
T 1mty_G 142 LNYYDTPLEELRKQ 155 (162)
T ss_dssp TTTTCSCHHHHHHH
T ss_pred cchhcCcHHHHHHh
Confidence 68888999999976
No 10
>1mhy_G Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.23.3.1 PDB: 1mhz_G
Probab=4.63 E-value=2.8e+02 Score=23.17 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=12.1
Q ss_pred ccccccChhhhhhH
Q psy17506 191 KEYENKSLEELRYE 204 (252)
Q Consensus 191 p~y~~~S~EELR~e 204 (252)
+.|-..++||||.+
T Consensus 146 ~dYy~~pLeeLRk~ 159 (169)
T 1mhy_G 146 TDYYGTPLEGLRKE 159 (169)
T ss_dssp TTTTSSCHHHHHHH
T ss_pred cchhcCcHHHHHHH
Confidence 68888999999976
Done!