RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17506
         (252 letters)



>d1ggpa_ d.165.1.1 (A:) Lectin 1 A-chain {Mongolian snake-gourd
          (Trichosanthes kirilowii) [TaxId: 3677]}
          Length = 234

 Score = 29.8 bits (67), Expect = 0.22
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 29 GFGATNNSLFGQTATQAPATSLFGGTQQQTTTFGS 63
           + A +NS F   A  +  + LF  + Q T  F +
Sbjct: 64 AYRAGSNSYFHAAAPGSSLSHLFSRSSQHTLGFDN 98


>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 212

 Score = 27.0 bits (59), Expect = 1.7
 Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 11/58 (18%)

Query: 184 HVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTPQPSMFGTNTSTAQ 241
            V       Y  ++  +     Y A             +F  + P P M G  T T Q
Sbjct: 166 LVAACLFSNYPRETRLQYVKRFYDA-----------VSTFKISLPTPIMSGVRTPTRQ 212


>d1hwma_ d.165.1.1 (A:) Ebulin A-chain {Sambucus ebulus [TaxId:
           28503]}
          Length = 251

 Score = 26.8 bits (59), Expect = 2.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 29  GFGATNNSLFGQTATQAPATSLFGGTQQQTTTFGS 63
            F A  NS F + AT+   ++LF GT Q T +F  
Sbjct: 80  AFSANGNSYFFKDATELQKSNLFLGTTQHTLSFTG 114


>d1m2ta_ d.165.1.1 (A:) Mistletoe lectin I A-chain {European
           mistletoe (Viscum album) [TaxId: 3972]}
          Length = 248

 Score = 26.8 bits (59), Expect = 2.8
 Identities = 10/36 (27%), Positives = 12/36 (33%)

Query: 29  GFGATNNSLFGQTATQAPATSLFGGTQQQTTTFGSG 64
            + A N S F   A     T  F GT   +  F   
Sbjct: 79  AYEAGNQSYFLSDAPAGAETQDFSGTTSSSQPFNGS 114


>d1abra_ d.165.1.1 (A:) Abrin A-chain {Abrus precatorius [TaxId:
           3816]}
          Length = 251

 Score = 26.4 bits (58), Expect = 3.7
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 29  GFGATNNSLFGQTATQAPATSLFGGTQQQTTTFGS 63
            + A   S F + A  + +  LF GT Q +  F  
Sbjct: 77  AYRAGTQSYFLRDAPSSASDYLFTGTDQHSLPFYG 111


>d2q3na1 d.165.1.1 (A:2-248) Agglutinin-1 chain A {Abrus precatorius
           [TaxId: 3816]}
          Length = 247

 Score = 26.0 bits (57), Expect = 4.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 29  GFGATNNSLFGQTATQAPATSLFGGTQQQTTTFGS 63
            + A + S F + A  + +T LF GTQQ +  F  
Sbjct: 75  AYRAGSESFFFRNAPASASTYLFTGTQQYSLPFDG 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.126    0.363 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 802,188
Number of extensions: 33531
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 17
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.5 bits)