BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17507
(1121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus
GN=Nup98 PE=1 SV=2
Length = 1816
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 155/268 (57%), Gaps = 21/268 (7%)
Query: 546 LTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIV 605
LT+ GY+ P++++L ++ + G CIV FTIG + +GSI F ++++ LN LD IV
Sbjct: 736 LTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLN---LDDIV 792
Query: 606 EFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIV 665
R KEV++Y DD KPPVG LNR A+VTL VWP DK++ LIK ++ ++NYE +
Sbjct: 793 HIRRKEVIVYVDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRL 852
Query: 666 IRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEEGESEPKK--PKMFVSTPIQPP 723
+ +F Y+PETGSW FKV HFSKYGL +SDEE E P K K + P+ P
Sbjct: 853 EAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPPKTTSKKLKTAPL--P 910
Query: 724 PAPHVET--QTLIKEKISPSPKQKLRNEIL--VKEMNRNYVSSDISKNIL-------NID 772
PA T TL + P Q E L V E++ + V DI++ + ++
Sbjct: 911 PAGQATTFQMTLNGKPAPPPQSQSPEVEQLGRVVELDSDMV--DITQEPVPDSVLEESVP 968
Query: 773 ETMDYIESSTEALARHMGTDPYKVQLMK 800
E + + +ST+ +A +G +P+ +Q+MK
Sbjct: 969 EDQEPVSASTQ-IASSLGINPHVLQIMK 995
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 189/472 (40%), Gaps = 82/472 (17%)
Query: 10 QKCTFIVREAEMHVPLPLILQKYVGTLQGSK-EFLVSATGSFFGTTPQPSMFGTNTSTAQ 68
+C ++E E L L+ Y +G + + T FG++P S T ++
Sbjct: 186 HQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSS-ATGLFSSS 244
Query: 69 PATSLFGATENKPLFGQSTTTFG-QPTNTFGTTN----SLFGKPNTGFGAAVSTQSNTFS 123
S F +NK FG STT FG P FG N SLF KP FG A +T + FS
Sbjct: 245 TTNSAFSYGQNKTAFGTSTTGFGTNPGGLFGQQNQQTTSLFSKP---FGQATTTPNTGFS 301
Query: 124 F-NPTTFGQPNTTAIKPFGAA-APQTSNLFATNTSQATTA--------FGAPQTSGFGSF 173
F N +T GQP+T + FG A Q LF T T+ +T FG P T GFG+
Sbjct: 302 FGNTSTLGQPSTNTMGLFGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQPNT-GFGAV 360
Query: 174 GTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASP 233
G S F NK T G STTS FGT + LFG KP +
Sbjct: 361 G-----STLFGNNKLT-TFGTSTTSAP-SFGTTSG----GLFGNKPTLTLGTNTNTSNFG 409
Query: 234 FGTSTS----FGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKP 289
FGT+ S FG++PA + T A A +LFGN
Sbjct: 410 FGTNNSGSSIFGSKPAAGTL--------------GTGLGTGFGTALGAGQASLFGN---- 451
Query: 290 AGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNS 349
N GG G FG+ G N+S + G F P AP A N+
Sbjct: 452 -----NQPKIGGPLGTGAFGA---------PGFNTSTAILG----FGAPQAPVALTDPNA 493
Query: 350 VNTQQIL---NLASLPY--FSAPTLYKGVLPATSSSSKLDEL--ILPAFQKNRINNKNVT 402
QQ + +L SL Y F L++ P + K + L PA QK +
Sbjct: 494 SAAQQAVLQQHLNSLTYSPFGDSPLFRN--PMSDPKKKEERLKPTNPAAQKALTTPTHYK 551
Query: 403 VNSNASYNKIKIKPVGSTSASTKSLFDGLSSDTDDSEKYFNMIKSAPKRLII 454
+ + +++ K + +T + LFDGL D M K + K+L++
Sbjct: 552 LTPRPA-TRVRPKALQTTGTAKSHLFDGLDDDEPSLANGAFMPKKSIKKLVL 602
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 980 WKLCVALWGTLDAKNNSHD------INMKRKDNLTEWLESVME---ENPKSIASKD-PEQ 1029
W LC ALWG L ++ D ++R+ + WL E S+ +D P +
Sbjct: 1272 WTLCEALWGHLKELDSQLDEPSEYIQTLERRRAFSRWLSHTAAPQIEEEVSLTRRDSPIE 1331
Query: 1030 NIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFIN 1089
+F +T ++ EA AQQS + L+ LS L S+ + + QL+ + +DSFI+
Sbjct: 1332 AVFSYLTGSRISEACCLAQQSGDHRLALLLSQLVGSQSVRELLTMQLADWHQLQADSFIH 1391
Query: 1090 KDILKLMLLTSGQPLYDGS-NGIINVCESLDWK 1121
+ L++ L +G+P++ S INVC LDWK
Sbjct: 1392 DERLRIFALLAGKPVWQLSEQKQINVCSQLDWK 1424
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 131/309 (42%), Gaps = 59/309 (19%)
Query: 56 QPSMFGTNTSTAQPATSLFGATENKP-LFGQSTTTFGQPTNTFGTTNSLFGKP----NTG 110
Q + FGT TS TS FG++ N LFG S T +P FGT++ F +P +TG
Sbjct: 25 QNTGFGT-TSGGAFGTSAFGSSNNTGGLFGNSQT---KPGGLFGTSS--FSQPATSTSTG 78
Query: 111 FGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGF 170
FG ST ++ + FG NT ++LF++ + AF + +GF
Sbjct: 79 FGFGTSTGTSN-----SLFGTANTG------------TSLFSSQNN----AFAQNKPTGF 117
Query: 171 GSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTA--TNNTSLFGQKPATNTF---G 225
G+FGT+ + F T N G+T+ + FG + TA T T F T+T G
Sbjct: 118 GNFGTSTSSGGLFGTTNTTSNPFGNTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAG 177
Query: 226 LPTNTASPFGTSTSFGAQPAQTSTLFN----SFNKPTPGFQFNTNTT-------PNTSLA 274
+ TN ++ T+ +++ N+ P Q TT P TS A
Sbjct: 178 VSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSSA 237
Query: 275 NNAFSGTL------FGN--TAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGL---N 323
FS + +G TA G TN GGLFG + + + FGQ N
Sbjct: 238 TGLFSSSTTNSAFSYGQNKTAFGTSTTGFGTNPGGLFGQQNQQTTSLFSKPFGQATTTPN 297
Query: 324 SSFNLGGTS 332
+ F+ G TS
Sbjct: 298 TGFSFGNTS 306
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 79/153 (51%), Gaps = 36/153 (23%)
Query: 194 GSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLP-TNTASPFGTSTSFGAQPAQTSTLFN 252
GS+ +TG FG N+ T LFG T++F P T+T++ FG FG +++LF
Sbjct: 43 GSSNNTGGLFG-NSQTKPGGLFG----TSSFSQPATSTSTGFG----FGTSTGTSNSLFG 93
Query: 253 SFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFG--NST--- 307
+ N T F ++ N + A N +G FGN FG ST++GGLFG N+T
Sbjct: 94 TANTGTSLF-----SSQNNAFAQNKPTG--FGN-------FGTSTSSGGLFGTTNTTSNP 139
Query: 308 FGSNTGNANTFGQGLNSSFNLG--GTSNTFNNP 338
FG+ +G + FG SSF GT+ FN P
Sbjct: 140 FGNTSG--SLFGP---SSFTAAPTGTTIKFNPP 167
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98
PE=1 SV=4
Length = 1817
Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 155/266 (58%), Gaps = 17/266 (6%)
Query: 546 LTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIV 605
LT+ GY+ P++++L ++ + G CIV FTIG + +GSI F ++++ LN LD IV
Sbjct: 736 LTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLN---LDDIV 792
Query: 606 EFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIV 665
R KEVV+Y DD KPPVG LNR A+VTL VWP DK++ LIK ++ ++NYE +
Sbjct: 793 HIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRL 852
Query: 666 IRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEEGESEPKK--PKMFVSTPIQPP 723
+ +F Y+PETGSW FKV HFSKYGL +SDEE E P K K + P+ PP
Sbjct: 853 EAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPSKTSTKKLKTAPL-PP 911
Query: 724 PAPHVETQTLIKEK---ISPSPKQKLRNEILVKEMNRNYVSSDISKN-ILN--IDETMDY 777
+ Q + K S ++ V E++ + V DI++ +L+ ++E+M
Sbjct: 912 ASQTTPLQMALNGKPAPPPQSQSPEVEQLGRVVELDSDMV--DITQEPVLDTMLEESMPE 969
Query: 778 IE---SSTEALARHMGTDPYKVQLMK 800
+ S++ +A +G +P+ +Q+MK
Sbjct: 970 DQEPVSASTHIASSLGINPHVLQIMK 995
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 135/470 (28%), Positives = 191/470 (40%), Gaps = 78/470 (16%)
Query: 10 QKCTFIVREAEMHVPLPLILQKYVGTLQGSK-EFLVSATGSFFGTTPQPSMFGTNTSTAQ 68
+C ++E E L L+ Y +G + + T FG++P S T ++
Sbjct: 186 HQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSS-ATGLFSSS 244
Query: 69 PATSLFGATENKPLFGQSTTTFG-QPTNTFGTTN----SLFGKPNTGFGAAVSTQSNTFS 123
S F +NK FG STT FG P FG N SLF KP FG A +TQ+ FS
Sbjct: 245 TTNSGFAYGQNKTAFGTSTTGFGTNPGGLFGQQNQQTTSLFSKP---FGQATTTQNTGFS 301
Query: 124 F-NPTTFGQPNTTAIKPFGAA-APQTSNLFATNTSQATTA--------FGAPQTSGFGSF 173
F N +T GQP+T + FG A Q LF T T+ +T FG T GFG+
Sbjct: 302 FGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQTNT-GFGAV 360
Query: 174 GTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASP 233
G+ +L N TF GS+T++ FGT + LFG KP +
Sbjct: 361 GS----TLFGNNKLTTF---GSSTTSAPSFGTTSG----GLFGNKPTLTLGTNTNTSNFG 409
Query: 234 FGTSTS----FGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKP 289
FGT+TS FG++PA + F T A A +LFGN
Sbjct: 410 FGTNTSGNSIFGSKPAPGTLGTGLGAG------FGT--------ALGAGQASLFGN---- 451
Query: 290 AGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLA---PQAPPA 346
N GG G FG+ N T G + P+A P A A
Sbjct: 452 -----NQPKIGGPLGTGAFGAPGFNTTTATLGFGAP----------QAPVALTDPNASAA 496
Query: 347 SNSVNTQQILNLASLPYFSAPTLYKGVLPATSSSSKLDEL--ILPAFQKNRINNKNVTVN 404
+V Q I +L P+ +P L++ P + K + L PA QK + +
Sbjct: 497 QQAVLQQHINSLTYSPFGDSP-LFRN--PMSDPKKKEERLKPTNPAAQKALTTPTHYKLT 553
Query: 405 SNASYNKIKIKPVGSTSASTKSLFDGLSSDTDDSEKYFNMIKSAPKRLII 454
+ +++ K + +T + LFDGL D M K + K+L++
Sbjct: 554 PRPA-TRVRPKALQTTGTAKSHLFDGLDDDEPSLANGAFMPKKSIKKLVL 602
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 959 MIHEHFNLASVSSNDSYDAQV-------WKLCVALWG---TLDAKNNS---HDINMKRKD 1005
+IH++ + +S D +AQ+ W LC ALWG LD++ N + ++R+
Sbjct: 1245 VIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRR 1304
Query: 1006 NLTEWLESV----MEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSM 1061
+ WL +EE P + +F +T ++ EA AQQS + L+ LS
Sbjct: 1305 AFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQ 1364
Query: 1062 LGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGI-INVCESLDW 1120
S+ + + QL + +DSFI + L++ L +G+P++ S INVC LDW
Sbjct: 1365 FVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQLDW 1424
Query: 1121 K 1121
K
Sbjct: 1425 K 1425
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 145/340 (42%), Gaps = 83/340 (24%)
Query: 48 GSFFGTTP--QPSM-------FGTNTSTAQPATSLFG-ATENKPLFGQSTTTFGQ--PTN 95
G FGT+ QP+ FGT+T TA +LFG A+ LF F Q PT
Sbjct: 60 GGLFGTSSFSQPATSTSTGFGFGTSTGTAN---TLFGTASTGTSLFSSQNNAFAQNKPTG 116
Query: 96 --TFGTTNS---LFGKPNTGFGAAVSTQSNTFSFNPTTF-GQPNTTAIK---PFGAAAPQ 146
FGT+ S LFG NT ST + F P++F P T IK P G
Sbjct: 117 FGNFGTSTSSGGLFGTTNTTSNPFGSTSGSL--FGPSSFTAAPTGTTIKFNPPTGTDTMV 174
Query: 147 TSNLFATNTS---QATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGF 203
+ + +TN S Q TA ++ Q+ N+ P +G TT TG F
Sbjct: 175 KAGV-STNISTKHQCITAMKEYESKSLEELRLEDYQA---NRKGPQNQVGAGTT-TGL-F 228
Query: 204 GTNTATNN-TSLFGQKPATNTFGLPTNTASPFGTSTS---------FGAQPAQTSTLFNS 253
G++ AT++ T LF + F N + FGTST+ FG Q QT++LF+
Sbjct: 229 GSSPATSSATGLFSSSTTNSGFAYGQNKTA-FGTSTTGFGTNPGGLFGQQNQQTTSLFSK 287
Query: 254 -FNKPT----PGFQFNTNTTPNTSLANNAFSGTLFGNT--AKPAGLFGNS---------- 296
F + T GF F +T N LFG T ++P GLFG +
Sbjct: 288 PFGQATTTQNTGFSFGNTSTIGQPSTNTM---GLFGVTQASQPGGLFGTATNTSTGTAFG 344
Query: 297 --------TNTG------GLFGN---STFGSNTGNANTFG 319
TNTG LFGN +TFGS+T +A +FG
Sbjct: 345 TGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFG 384
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 130/309 (42%), Gaps = 59/309 (19%)
Query: 56 QPSMFGTNTSTAQPATSLFGATENKP-LFGQSTTTFGQPTNTFGTTNSLFGKP----NTG 110
Q + FGT TS TS FG++ N LFG S T +P FGT++ F +P +TG
Sbjct: 25 QNTGFGT-TSGGAFGTSAFGSSNNTGGLFGNSQT---KPGGLFGTSS--FSQPATSTSTG 78
Query: 111 FGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGF 170
FG FG TA FG A+ TS LF++ + AF + +GF
Sbjct: 79 FG----------------FGTSTGTANTLFGTASTGTS-LFSSQNN----AFAQNKPTGF 117
Query: 171 GSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTA--TNNTSLFGQKPATNTF---G 225
G+FGT+ + F T N GST+ + FG + TA T T F T+T G
Sbjct: 118 GNFGTSTSSGGLFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAG 177
Query: 226 LPTNTASPFGTSTSFGAQPAQTSTLFN----SFNKPTPGFQFNTNTT-------PNTSLA 274
+ TN ++ T+ +++ N+ P Q TT P TS A
Sbjct: 178 VSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSSA 237
Query: 275 NNAF------SGTLFGN--TAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGL---N 323
F SG +G TA G TN GGLFG + + + FGQ N
Sbjct: 238 TGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPGGLFGQQNQQTTSLFSKPFGQATTTQN 297
Query: 324 SSFNLGGTS 332
+ F+ G TS
Sbjct: 298 TGFSFGNTS 306
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 78/153 (50%), Gaps = 36/153 (23%)
Query: 194 GSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLP-TNTASPFGTSTSFGAQPAQTSTLFN 252
GS+ +TG FG N+ T LFG T++F P T+T++ FG FG +TLF
Sbjct: 43 GSSNNTGGLFG-NSQTKPGGLFG----TSSFSQPATSTSTGFG----FGTSTGTANTLFG 93
Query: 253 SFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFG--NST--- 307
+ + T F ++ N + A N +G FGN FG ST++GGLFG N+T
Sbjct: 94 TASTGTSLF-----SSQNNAFAQNKPTG--FGN-------FGTSTSSGGLFGTTNTTSNP 139
Query: 308 FGSNTGNANTFGQGLNSSFNLG--GTSNTFNNP 338
FGS +G + FG SSF GT+ FN P
Sbjct: 140 FGSTSG--SLFGP---SSFTAAPTGTTIKFNPP 167
>sp|G5EEH9|NUP98_CAEEL Nuclear pore complex protein Nup98-Nup96 OS=Caenorhabditis elegans
GN=npp-10 PE=2 SV=1
Length = 1678
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 109/178 (61%), Gaps = 5/178 (2%)
Query: 545 KLTRKGYFVSPTLNELKQLKTKNGPCIVE-GFTIGHEEFGSICFLESIDISELNNVDLDS 603
KLT+ YF PT+NE+K + KNG ++E G T+G +GS+ + + EL +V LD
Sbjct: 774 KLTKPDYFSLPTINEMKNM-IKNGRVVLEDGLTVGRSSYGSVYWPGRV---ELKDVALDE 829
Query: 604 IVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEA 663
IV FR +EV +YP++ K P G LNRPA+VTL +VW DK T + ++DV K+ + +
Sbjct: 830 IVVFRHREVTVYPNEEEKAPEGQELNRPAEVTLERVWYTDKKTKKEVRDVVKLSEIGWRE 889
Query: 664 IVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEEGESEPKKPKMFVSTPIQ 721
+ R RM F ++ ETGSW F+V HFSKYGL + DE + P + + S+P+Q
Sbjct: 890 HLERQTIRMGAAFKDFRAETGSWVFRVDHFSKYGLADDDEPMDGSPPQQALQASSPLQ 947
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 136/296 (45%), Gaps = 77/296 (26%)
Query: 59 MFGTNTSTAQPATSLFGATENKPLFGQSTTT-FGQPTNTFGTTNSLFGKPNTGFGAAVST 117
+FG+ S AQ TSLFG G ST++ FG T+T T +SLFG N
Sbjct: 226 LFGS--SNAQQKTSLFG--------GASTSSPFGGNTSTANTGSSLFGNNN--------- 266
Query: 118 QSNTFSFNPTTFG-QPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGS-FGT 175
+NT + + + FG +P +++ FG+ A ++ F T + PQT+ GS FG
Sbjct: 267 -ANTSAASGSLFGAKPAGSSL--FGSTATTGASTFGQTTGSSLFGNQQPQTNTGGSLFGN 323
Query: 176 NQNQ----SLNFNQNKPTFNLGG------STTSTGFGFGTNTATNNTSLFGQKPATNTFG 225
QNQ SL N L G S+GF FG A N FGQ A NT G
Sbjct: 324 TQNQNQSGSLFGNTGTTGTGLFGQAQQQPQQQSSGFSFGGAPAATNA--FGQPAAANTGG 381
Query: 226 -LPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAF-----S 279
L NT++ S+ FGA+PA TST GF F T P T+ NAF
Sbjct: 382 SLFGNTSTANTGSSLFGAKPA-TST----------GFTFGA-TQPTTT---NAFGSTNTG 426
Query: 280 GTLFG-NTAKPAGLFGN---------------STNTGGLFGNSTFGS---NTGNAN 316
G LFG N AKP GLFGN ++GGLFG++T + NTG N
Sbjct: 427 GGLFGNNAAKPGGLFGNTTNTGTGGGLFGSQPQASSGGLFGSNTQATQPLNTGFGN 482
Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 13/177 (7%)
Query: 950 YSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDAKNNSHDINMKRKDNLTE 1009
YSD + M ++ ++A D + VWKL AL+ + +R + + E
Sbjct: 1180 YSD--SYSSMFAKYIDVAQAGGYDGH-VSVWKLISALF----PYERREGWSFERGEEIGE 1232
Query: 1010 WLES-VMEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLG-CSEI 1067
WL + ++ P ++ ++ + + +A A ++ L+ L C E
Sbjct: 1233 WLRTEAVKSVPDDRSADTSSNGVWNQLCLGDIDKAFQIAIDNNQPQLATMLQTSAVCPEA 1292
Query: 1068 GQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLY----DGSNGIINVCESLDW 1120
+AQL ++ + I K+ LK +L SG Y DG N IN + L+W
Sbjct: 1293 TVHCFKAQLDNWKKCETLHLIPKETLKCYVLMSGLSHYEWDQDGKNHSINCLDGLNW 1349
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup189 PE=1 SV=1
Length = 1778
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 174/599 (29%), Positives = 243/599 (40%), Gaps = 130/599 (21%)
Query: 159 TTAFGAPQTSGFGSFGTNQNQSLNFNQNKPT-FNLGGSTT---STGFGFGTNTATNNTSL 214
T+ FG +S F SFG N N + KP+ F G +TT S GF FG N
Sbjct: 424 TSTFGGNNSSNF-SFGANNNAA-----TKPSGFGFGSTTTTPASGGFSFGQNANNAPKPA 477
Query: 215 FGQKPAT--------------NTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPG 260
FG T T T + + FG S +F S N TPG
Sbjct: 478 FGSTATTAPKPAGTGLFGGLGAGANTNTATNATGTGGSLFGNANTAGSNMFGSANSSTPG 537
Query: 261 FQFNTNTTPNTSLANNAFSGT-LFG----NTAKPAGLFGN--STNTGGLFGNST------ 307
+T N + +N +GT LFG NT G N ST TGGLFGN+T
Sbjct: 538 TGLFGSTQTNNATSN---TGTGLFGSNNANTTNTGGSLFNKPSTTTGGLFGNTTAQQPST 594
Query: 308 -----FG-SNTGN---ANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASN---SVNTQQI 355
FG SNT N + FG GL G + Q P +N S T Q+
Sbjct: 595 TTSGLFGASNTNNQAQTSNFGTGLFGGSQAGQQQQPLQASI-DQNPYGNNPLFSSTTSQV 653
Query: 356 LNLASLPYFSAPTLYKGVL--PATSSSSKLDELILPAFQKNRINNKNVTVNSNASYNKIK 413
APT + + P TS + LP F + ++ + S +S+ K
Sbjct: 654 ----------APTSIQEPIASPLTSKPTPKKAASLPQFWLSPRSHNTARLASISSFAKSA 703
Query: 414 IKPVGSTSASTK----SLFDGLSSDTDDSEKYFNMIKSAPKRLIILPKKTKPMTLK--VN 467
+ + STSAS K LFD L+ D S F ++ K+L+I K +K L+ V
Sbjct: 704 V--MNSTSASGKPKSLHLFDSLNDDVLLSADAFTPRQNI-KKLVITHKISKDDILQNGVK 760
Query: 468 NVTTAETDVTVVSNNSSTPVSSSTQLQTPVSSKLTLNVAELKENISPSVKVSDLKVIKSP 527
N A++D V K+P
Sbjct: 761 NGNDAKSDSKVQE--------------------------------------------KAP 776
Query: 528 LNTSIGSETSEGDTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICF 587
N + GS + + + Y++ P++ EL + K C V F++G +G + F
Sbjct: 777 QNEADGSLKKD----EHVVLSDDYWMKPSIEELSKYP-KEKLCSVHQFSVGRTGYGQVAF 831
Query: 588 LESIDISELNNVDL--DSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKS 645
L+ +D+S ++ +V F K +YP + + PP+G LN PA +TL K WP +
Sbjct: 832 LKPVDLSGFEKLEDIPGKVVVFERKICAVYPVEGSSPPLGEGLNVPAIITLEKTWPLSRE 891
Query: 646 TGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEE 704
T E IKD Q N Y V R + EF+ + G W FKVQHFS+YGLL+ +EE
Sbjct: 892 TREPIKDPQ---NPRYIQHVKRLHRIKDTEFIDFN--DGKWIFKVQHFSRYGLLDDEEE 945
>sp|Q54EQ8|NUP98_DICDI Nuclear pore complex protein Nup98-Nup96 OS=Dictyostelium discoideum
GN=nup98 PE=3 SV=1
Length = 2053
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 6/160 (3%)
Query: 545 KLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSI 604
KLTR GY P++ EL + KT V+GFTI + GSI F S ++ L DLD I
Sbjct: 1022 KLTRDGYQCVPSIKELSK-KTDKELSSVQGFTISRDGCGSIYFPGSTNLVAL---DLDDI 1077
Query: 605 VEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAI 664
V+ +EV +Y D+ KP +G LNR A VTL WPK+K+ GE++K+ I + YE
Sbjct: 1078 VDIEPREVSVYKDEETKPEIGYGLNRDAVVTLENCWPKNKN-GEVVKEDGTILD-KYENA 1135
Query: 665 VIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEE 704
+ + + + FVSY G+W F V+HFSKY + DE+
Sbjct: 1136 LKKVSAKSDCGFVSYSRSNGTWVFTVKHFSKYSAPDFDED 1175
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 146/365 (40%), Gaps = 106/365 (29%)
Query: 46 ATGSFFGTTPQ---PSMFGT------NTSTAQPATSLFGA---TENKPLFGQSTTTFGQP 93
A G FG+ P S+FG+ T AQP SLFG T P Q++T FGQP
Sbjct: 359 AGGGLFGSMPSTGGSSLFGSTQPTQQQTGGAQPTQSLFGGQTQTTTSPFGSQTSTPFGQP 418
Query: 94 TNTFGTTNSLFG-----KPNTG---FGAAVSTQSN---TFSFNPTT----FG-QPNTTAI 137
T T + LFG + NTG FGA + Q++ F PT+ FG P
Sbjct: 419 QQT-NTGSGLFGAQQTQQTNTGGGLFGAQPTQQTSGGGLFGTQPTSGTGLFGTSPTAGGT 477
Query: 138 KPFGAAAPQT--------------------------SNLFATNTSQATTAFGAPQTSGFG 171
FG P + + LF + + T FG+ TSG G
Sbjct: 478 GLFGTTQPTSQGTGLFGTTQPTTQGTGLFGTSPTSGTGLFGSTPTSGTGLFGSTPTSGTG 537
Query: 172 SFGTN---QNQSLN------------------FNQNKPTFNLGGS-------TTSTGFGF 203
FG+ QNQ F +P+ N GG +T+TG F
Sbjct: 538 LFGSAQPPQNQQSQTSLFGNTGTGATNTGTGLFGSAQPSSNPGGGLFGSAQPSTTTGGLF 597
Query: 204 GTN--TATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGF 261
G+N TA TSLFG + GL A+P TS FG+ PAQT LF S T
Sbjct: 598 GSNQPTAQPTTSLFGNTTGS-VGGL---GATPNITSGLFGSNPAQTGGLFGSTQPTTQTS 653
Query: 262 QF-NTNTTPN----------------TSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFG 304
F NT +T T+ A SG LFGN ++P G ++GGLFG
Sbjct: 654 LFGNTGSTGGLGAQNGGGLFGNLSQPTATAGQGLSGGLFGNLSQPTATAGQGLSSGGLFG 713
Query: 305 NSTFG 309
N+ G
Sbjct: 714 NTLLG 718
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 17/197 (8%)
Query: 921 KLDRKFSIT-WLKYKRSFLMTCNDNLMPDDYSDVSNLFEMIHEHFNLASVSSNDSYDAQV 979
K D+K SI +LK S +NL + +SN+ E I L SS Y ++
Sbjct: 1445 KEDKKESIIKFLKNHHSHSSLVPENLKSIGWFSISNVQEQIESQLTLNVPSSQSVYYNRI 1504
Query: 980 WKLCVALWGTLDAKNNSHDINMK------RKDNLTEWLESV--------MEENPKSIASK 1025
W L LWG + N S IN RK NL +WL+ V M+ K S
Sbjct: 1505 WSLISNLWGNVLKGNGSKYINTNYSEDTIRKLNLNQWLKDVIAPLLRDEMDSLRKKTNSN 1564
Query: 1026 DPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSML-GCSEIGQAFMQAQLSHYVNATS 1084
EQ IF ++ ++ EA A ++ +F L+ +S + SE G+ + QL+ Y + S
Sbjct: 1565 YLEQ-IFSYLSAKQIKEASDLANENKDFRLATMMSQIWSSSESGKELILKQLTTYHSNGS 1623
Query: 1085 DSFINKDILKLMLLTSG 1101
D FIN+ L+++ L +G
Sbjct: 1624 DEFINEKRLEILHLIAG 1640
>sp|P49687|NU145_YEAST Nucleoporin NUP145 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP145 PE=1 SV=1
Length = 1317
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 176/667 (26%), Positives = 278/667 (41%), Gaps = 130/667 (19%)
Query: 87 TTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQ 146
T+T QP+++ F + +TG V+ +NT + +P+ G N + + P
Sbjct: 21 TSTPAQPSSSLQ-----FPQKSTGLFGNVNVNANTSTPSPSG-GLFNANSNANSISQQPA 74
Query: 147 TSNLFATNTSQATTA-FGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGT 205
++LF +Q + FGA + S G+ F N T N ST STG G+
Sbjct: 75 NNSLFGNKPAQPSGGLFGATNNTTSKSAGSL------FGNNNATAN---STGSTGLFSGS 125
Query: 206 N---TATNNTSLFGQKPATNT---------FGLPTNTASPFGTSTSFGAQPAQTSTLFNS 253
N ++T N LFG N FG PT T P G FG
Sbjct: 126 NNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTT--PAGAGGLFG------------ 171
Query: 254 FNKPTPGFQFNTNTTPNTSLANNAFSGTLFG--NTAKPAGLFGN---STNTGGLFGN--S 306
N+++T +T+ LFG NT G+FG ++ TGGLFGN +
Sbjct: 172 ----------NSSSTNSTT--------GLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGA 213
Query: 307 TF---GSNTGNANTFGQGLNSS----------FNLGGTSNTFNNPLAPQAPPASNSVN-- 351
+F G TG +T G+N S ++ + + N + P N
Sbjct: 214 SFPRSGETTGTMSTNPYGINISNVPMAVADMPRSITSSLSDVNGKSDAEPKPIENRRTYS 273
Query: 352 -TQQILNLASLPYFSAPTLYKGV---LPATSSSSKLDELILPAFQKNRINNKNVTVNSNA 407
+ + A LP S +L + L AT S+ +E+ P++ K +N S
Sbjct: 274 FSSSVSGNAPLPLASQSSLVSRLSTRLKATQKSTSPNEIFSPSYSKPWLNG----AGSAP 329
Query: 408 SYNKIKIKPVGSTSASTKSLFDGLSSDTDDSEKYFNMIKSAPKRLIILPKKTKPMTLKVN 467
+ + S + + S+F + FN + S L L K LK++
Sbjct: 330 LVDDFFSSKMTSLAPNENSIF---------PQNGFNFLSSQRADLTELRK------LKID 374
Query: 468 NVTTAETDVTVVSNNSSTPVSSSTQLQ--------TPVSSKLTLNVAELKENISPSVKVS 519
+ +A + ++S TP + +Q P+++ ++ + KEN ++ +
Sbjct: 375 SNRSAAKKLKLLS---GTPAITKKHMQDEQDSSENEPIANADSVTNIDRKENRDNNLDNT 431
Query: 520 DL--KVIKSPLNTSIGSETSEGDTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTI 577
L K + LN G T + + K + GY+ SP+ +L++L K V F I
Sbjct: 432 YLNGKEQSNNLNKQDGENTLQHE----KSSSFGYWCSPSPEQLERLSLKQ-LAAVSNFVI 486
Query: 578 GHEEFGSICFLESIDISELNNVDLDS----IVEFRF-KEVVLYPDDANKPPVGTALNRPA 632
G +G I F +D++ + IV FR K V +YPD+A KP +G LN PA
Sbjct: 487 GRRGYGCITFQHDVDLTAFTKSFREELFGKIVIFRSSKTVEVYPDEATKPMIGHGLNVPA 546
Query: 633 KVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQH 692
+TL V+P DK T + +KD K +R+ MN ++SY P G+W FKV H
Sbjct: 547 IITLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMN--YISYNPFGGTWTFKVNH 604
Query: 693 FSKYGLL 699
FS +GL+
Sbjct: 605 FSIWGLV 611
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 66/177 (37%), Gaps = 49/177 (27%)
Query: 46 ATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENK------PLFGQSTTTFGQ--PTNTF 97
A S FG P AQP+ LFGAT N LFG + T T F
Sbjct: 74 ANNSLFGNKP-----------AQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLF 122
Query: 98 GTTNSLFGKPNTG--FGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAA--------PQT 147
+N++ G FG + + + + N FG+P TT P GA T
Sbjct: 123 SGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTT---PAGAGGLFGNSSSTNST 179
Query: 148 SNLFATNTSQATTAF-----GAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTST 199
+ LF +N +Q++T GA T G F N +F G TT T
Sbjct: 180 TGLFGSNNTQSSTGIFGQKPGASTTGGL------------FGNNGASFPRSGETTGT 224
>sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUP116 PE=1 SV=2
Length = 1113
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 19/158 (12%)
Query: 543 DFKLTRKGYFVSPTLNELKQ---LKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNV 599
D + Y++SP+L+ L L+ + P +V +GH+ +G I FLE +D++ +
Sbjct: 962 DASFINENYYISPSLDTLSSYSLLQLRKVPHLV----VGHKSYGKIEFLEPVDLAGIPLT 1017
Query: 600 DLDS-IVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKN 658
L I+ F K ++Y + N+P G +N A++T +P DKST + IKD
Sbjct: 1018 SLGGVIITFEPKTCIIYANLPNRPKRGEGINVRARITCFNCYPVDKSTRKPIKDP----- 1072
Query: 659 MNYEAIVIRACTRM----NVEFVSYQPETGSWCFKVQH 692
N++ +V R R+ N +F SY ++G++ F V H
Sbjct: 1073 -NHQ-LVKRHIERLKKNPNSKFESYDADSGTYVFIVNH 1108
Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 130/351 (37%), Gaps = 118/351 (33%)
Query: 47 TGSFFGTTPQP---------------------SMFGTNTSTAQPATSLFGATENKP---- 81
TG FG P +FG++T+ + S FGA NKP
Sbjct: 203 TGGLFGQKPATGMFGTGTGSGGGFGSGATNSTGLFGSSTNLS--GNSAFGA--NKPATSG 258
Query: 82 ------------------LFGQSTTT-----FGQPTNTFGTTN----SLFGKPNTG---- 110
LFGQ + FGQ N+FG N FG+ N G
Sbjct: 259 GLFGNTTNNPTNGTNNTGLFGQQNSNTNGGLFGQQQNSFGANNVSNGGAFGQVNRGAFPQ 318
Query: 111 -----FGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGA- 164
+ QSN + N FGQ T FG A P + LF S + AFG
Sbjct: 319 QQTQQGSGGIFGQSNA-NANGGAFGQQQGTGAL-FG-AKPASGGLFG--QSAGSKAFGMN 373
Query: 165 --PQTSGFGSFG-TNQNQSLN--FNQNKPTFNLGGSTTSTGFGFGTNTATNNTS-LFGQK 218
P + G FG TNQ QS F Q + + N GG FG N + N S LFGQ+
Sbjct: 374 TNPTGTTGGLFGQTNQQQSGGGLFGQQQNS-NAGGL-------FGQNNQSQNQSGLFGQQ 425
Query: 219 PATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAF 278
++N FG QP Q LF S KP G F +T + NA
Sbjct: 426 NSSNAFG-----------------QPQQQGGLFGS--KPAGGL-FGQQQGASTFASGNAQ 465
Query: 279 SGTLFGNTAKP----AGLFGNSTNT-----GGLFGNSTFGSNTGNANTFGQ 320
+ ++FG + GLFG N GGLFG +N N FGQ
Sbjct: 466 NNSIFGQNNQQQQSTGGLFGQQNNQSQSQPGGLFGQ----TNQNNNQPFGQ 512
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUP100 PE=1 SV=1
Length = 959
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 543 DFKLTRKGYFVSPTLNELK-----QLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELN 597
D + Y++SP++ L +L+ + IGH +G + FLE +D L
Sbjct: 809 DVTFFKNNYYISPSIETLGNKSLIELRK------INNLVIGHRNYGKVEFLEPVD---LL 859
Query: 598 NVDLDSI----VEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDV 653
N LD++ V F K +Y + + KP G +N +VTL +P DK T + IK++
Sbjct: 860 NTPLDTLCGDLVTFGPKSCSIYENCSIKPEKGEGINVRCRVTLYSCFPIDKETRKPIKNI 919
Query: 654 QKIKNMNYEAIVIRACTRMN----VEFVSYQPETGSWCFKVQH 692
++ R+ ++ +F SY P TG++ + + H
Sbjct: 920 -------THPLLKRSIAKLKENPVYKFESYDPVTGTYSYTIDH 955
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 119/283 (42%), Gaps = 79/283 (27%)
Query: 73 LFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQP 132
+FG N+P+FG S +FG T++FG S +PN+ FG + + ++T + + FG
Sbjct: 1 MFG--NNRPMFGGSNLSFGSNTSSFGGQQSQ--QPNSLFGNSNNNNNSTSNNAQSGFGG- 55
Query: 133 NTTAIKPFGAAAPQTSN-LFATNTSQATTAFG----APQTSGFGSFGTNQNQSLN----- 182
F +AA SN LF N +Q AFG A Q S FGS ++ + N
Sbjct: 56 -------FTSAAGSNSNSLFGNNNTQNNGAFGQSMGATQNSPFGSLNSSNASNGNTFGGS 108
Query: 183 ------------------------FNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQK 218
F NKP N GG T FG N + +SLFG +
Sbjct: 109 SSMGSFGGNTNNAFNNNSNSTNSPFGFNKP--NTGG----TLFGSQNNNSAGTSSLFGGQ 162
Query: 219 PATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAF 278
+T+T G NT S FGT + S +F + N N+ NT
Sbjct: 163 -STSTTGTFGNTGSSFGTGLN-----GNGSNIFGAGN----------NSQSNT------- 199
Query: 279 SGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNT--GNANTFG 319
+G+LFGN A FG + G LFG + +N GN N G
Sbjct: 200 TGSLFGNQQSSA--FGTNNQQGSLFGQQSQNTNNAFGNQNQLG 240
>sp|Q02199|NUP49_YEAST Nucleoporin NUP49/NSP49 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUP49 PE=1 SV=1
Length = 472
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 111/269 (41%), Gaps = 90/269 (33%)
Query: 59 MFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQ 118
MFG N +++ PA LFG G ST G NTGF
Sbjct: 1 MFGLNKASSTPAGGLFGQAS-----GAST-----------------GNANTGF------- 31
Query: 119 SNTFSFNPTTFGQ---PNTTAI---KPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGS 172
SF T GQ P+T + KP G+ ++ T AFG T+G G
Sbjct: 32 ----SFGGTQTGQNTGPSTGGLFGAKPAGSTGGLGASFGQQQQQSQTNAFGGSATTGGGL 87
Query: 173 FGTNQNQSLNFNQNKPTFNLGGSTTSTGFG-FGTNTATNNTSLFGQKPATNTFGL----- 226
FG NKP +T +TG G FG N+ +N+ SLFG A + GL
Sbjct: 88 FG-----------NKPN-----NTANTGGGLFGANSNSNSGSLFGSNNAQTSRGLFGNNN 131
Query: 227 -----PTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGT 281
+++ ++ FG++PA ++LF NT+ +++ A N
Sbjct: 132 TNNINNSSSGMNNASAGLFGSKPAGGTSLFG-------------NTSTSSAPAQNQ---G 175
Query: 282 LFGNTAKPAG--LFGN----STNTGGLFG 304
+FG AKPAG LFGN +T GGLFG
Sbjct: 176 MFG--AKPAGTSLFGNNAGNTTTGGGLFG 202
>sp|Q12816|TROP_HUMAN Trophinin OS=Homo sapiens GN=TRO PE=1 SV=3
Length = 1431
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 152/359 (42%), Gaps = 75/359 (20%)
Query: 32 YVGTLQGSKEFLVS-ATGSFFGTTPQPSM-FGT--NTST----AQPATSLFGATENKPL- 82
+ GTL S F S +TG+ FG S FG+ NTST A ++ FG T + +
Sbjct: 949 FGGTLSTSICFDGSPSTGAGFGGALNTSASFGSVLNTSTGFGGAMSTSADFGGTLSTSVC 1008
Query: 83 FGQS---TTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSN---TFSFNPTTFGQPNTTA 136
FG S + +FG NT N G+G AVST ++ T S + G P+T+A
Sbjct: 1009 FGGSPGTSVSFGSALNT-----------NAGYGGAVSTNTDFGGTLSTSVCFGGSPSTSA 1057
Query: 137 IKPFGAA---------APQTSNLFATNTSQATTAFGAPQTS-GFGS-------FGTNQNQ 179
FG A A TS F+ S + GAP T+ GFG FG +
Sbjct: 1058 --GFGGALNTNASFGCAVSTSASFSGAVSTSACFSGAPITNPGFGGAFSTSAGFGGALST 1115
Query: 180 SLNFNQNKPTFNLG-GSTTSTGFGFGTNTATNNTSL-FGQKPATN-TFGLPTNTASPFGT 236
+ +F P+ ++G G+ ST FG + TSL FG P+T+ FG +NT FG
Sbjct: 1116 AADFG-GTPSNSIGFGAAPSTSVSFG---GAHGTSLCFGGAPSTSLCFGSASNTNLCFG- 1170
Query: 237 STSFGAQPAQTSTLFNSFNKPT--------PGFQFNTNTTPNTSLANN-----AFSGTLF 283
P TS F+ P+ GF F + N F G L
Sbjct: 1171 ------GPPSTSACFSGATSPSFCDGPSTSTGFSFGNGLSTNAGFGGGLNTSAGFGGGLG 1224
Query: 284 GNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSS--FNLG-GTSNTFNNPL 339
+ GL +S GGL ++ FG G + FG GL +S F+ G GTS F L
Sbjct: 1225 TSAGFSGGLSTSSGFDGGLGTSAGFGGGPGTSTGFGGGLGTSAGFSGGLGTSAGFGGGL 1283
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 134/317 (42%), Gaps = 44/317 (13%)
Query: 50 FFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKP-- 107
F GT FG + ST+ GA FG + +T + T+ G P
Sbjct: 1039 FGGTLSTSVCFGGSPSTSA---GFGGALNTNASFGCAVSTSASFSGAVSTSACFSGAPIT 1095
Query: 108 NTGFGAAVSTQSNTFSFNPTT---FGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGA 164
N GFG A ST + F +T FG + +I FGAA P TS F + GA
Sbjct: 1096 NPGFGGAFSTSAG-FGGALSTAADFGGTPSNSIG-FGAA-PSTSVSFGGAHGTSLCFGGA 1152
Query: 165 PQTSGFGSFGTNQNQSLNFN-----------QNKPTFNLGGSTTSTGFGFGTNTATN--- 210
P TS FG+ N +L F P+F G +TSTGF FG +TN
Sbjct: 1153 PSTSL--CFGSASNTNLCFGGPPSTSACFSGATSPSF-CDGPSTSTGFSFGNGLSTNAGF 1209
Query: 211 ----NTSL-FGQKPATN---TFGLPTNTA--SPFGTSTSFGAQPAQTSTLFNSFNKPTPG 260
NTS FG T+ + GL T++ GTS FG P TST F + G
Sbjct: 1210 GGGLNTSAGFGGGLGTSAGFSGGLSTSSGFDGGLGTSAGFGGGPG-TSTGFGGGLGTSAG 1268
Query: 261 FQFNTNTTPNTS---LANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANT 317
F T+ + ++ F G L N + + L ++ +GGL + FGS NA +
Sbjct: 1269 FSGGLGTSAGFGGGLVTSDGFGGGLGTNASFGSTLGTSAGFSGGLSTSDGFGSRP-NA-S 1326
Query: 318 FGQGLNSSFNLGGTSNT 334
F +GL++ G SNT
Sbjct: 1327 FDRGLSTIIGFGSGSNT 1343
>sp|P48837|NUP57_YEAST Nucleoporin NUP57 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP57 PE=1 SV=1
Length = 541
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 99/245 (40%), Gaps = 68/245 (27%)
Query: 131 QPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTF 190
QPN+ G A Q +N F +N +T G G FG NKP
Sbjct: 45 QPNSGTATTGGFGANQATNTFGSNQQSST---------GGGLFG-----------NKPAL 84
Query: 191 NLGGSTTSTGFG-----------FGTNTA-----TNNTSLFGQKPATNTFGLPTNTASPF 234
GS S+ FG TA T LFG KP T T GL N+A
Sbjct: 85 ---GSLGSSSTTASGTTATGTGLFGQQTAQPQQSTIGGGLFGNKPTTTTGGLFGNSAQNN 141
Query: 235 GTSTS--FGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGL 292
T++ FG + T +L N+T NTS N +G LFG AKP
Sbjct: 142 STTSGGLFGNKVGSTGSLMGG------------NSTQNTS---NMNAGGLFG--AKPQ-- 182
Query: 293 FGNST-NTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQ---APPASN 348
N+T TGGLFG+ GS T N FG G ++ LGG F PQ AP N
Sbjct: 183 --NTTATTGGLFGSKPQGSTT-NGGLFGSGTQNNNTLGG-GGLFGQSQQPQTNTAPGLGN 238
Query: 349 SVNTQ 353
+V+TQ
Sbjct: 239 TVSTQ 243
Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 31/152 (20%)
Query: 197 TSTGFGFGT---NTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNS 253
+++GFGFG N+ T T FG ATNTFG +++ G FG +PA S
Sbjct: 35 SASGFGFGGSQPNSGTATTGGFGANQATNTFGSNQQSSTGGGL---FGNKPALGSLG--- 88
Query: 254 FNKPTPGFQFNTNTTPNTSLANNAFSGTLFGN-TAKP------AGLFGN--STNTGGLFG 304
++ T+ A LFG TA+P GLFGN +T TGGLFG
Sbjct: 89 -------------SSSTTASGTTATGTGLFGQQTAQPQQSTIGGGLFGNKPTTTTGGLFG 135
Query: 305 NSTFGSNTGNANTFGQGLNSSFNLGGTSNTFN 336
NS ++T + FG + S+ +L G ++T N
Sbjct: 136 NSAQNNSTTSGGLFGNKVGSTGSLMGGNSTQN 167
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 79/197 (40%), Gaps = 50/197 (25%)
Query: 141 GAAAPQTSNLFATNTSQATTAFGAPQTSGFGS-----FGTNQNQSLNFNQNKPTFNLGGS 195
G AP T++ +++ Q T FG GFG FG+ ++ N G
Sbjct: 391 GFGAPSTTD---SSSGQQTAGFGGASKPGFGGDSSTGFGSGLKAGFGGHRASTAENSGLP 447
Query: 196 TTSTGFG-----FGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTL 250
T +TGFG G +++N S FGQ+ + FG T FG +S
Sbjct: 448 TETTGFGGKLPPAGFGASSSNESAFGQQ--SKGFGGATKNG--FGGDSS----------- 492
Query: 251 FNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGG-----LFGN 305
NSF K GF + FG+T P+ S NTGG FG
Sbjct: 493 -NSFGKRDSGFGGPQDQG--------------FGDTDAPSKSGLGSFNTGGGAVKSAFGA 537
Query: 306 STFGS--NTGNANTFGQ 320
+ FGS N GN NTFG+
Sbjct: 538 AGFGSSSNFGNGNTFGE 554
>sp|Q80U93|NU214_MOUSE Nuclear pore complex protein Nup214 OS=Mus musculus GN=Nup214 PE=1
SV=2
Length = 2085
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 128/303 (42%), Gaps = 64/303 (21%)
Query: 72 SLFGATENKPLFGQSTTTFGQPTNTFGTTN----------------SLFGKPNTG--FGA 113
+LFG N P FGQS FGQ ++ FG T+ S FG NTG FG
Sbjct: 1792 TLFG-QNNPPAFGQSPG-FGQGSSVFGGTSATTSTAAPSGFSFCQASGFGSSNTGSVFGQ 1849
Query: 114 AVSTQSNTFSFNPTT----FGQPNTTAIKPFGAAAPQTSNLFATNT---SQATTAFG--- 163
A +T + F + T+ FG N T F + + A N S A FG
Sbjct: 1850 AANTGGSVFGQSSTSSGGVFGSGNATRGGGFFSGLGGKPSQDAANKNPFSSAGGGFGSTA 1909
Query: 164 APQTSG-FGSFGTN---QNQSLNFNQNKP--TFNLGG-STTSTGFGFGTNTATNNTSLFG 216
AP TS FG+ G S +F + KP TF+ GG S S GFGF T N T FG
Sbjct: 1910 APNTSNLFGNSGAKTFGGFGSSSFGEQKPAGTFSSGGGSVASQGFGFST---PNKTGGFG 1966
Query: 217 QKPATNTFG-LPTNTASP-FGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLA 274
P FG PT SP FG +FG+ PA TS L ++ K F T ++
Sbjct: 1967 AAP---VFGSPPTFGGSPGFGGVPAFGSAPAFTSPLGSTGGK-----VFGEGTAAASAGG 2018
Query: 275 -------NNAFSGTL-------FGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQ 320
N A GTL FG+ ++ FG ++ FG+ T G++N+ Q
Sbjct: 2019 FGFGSSGNTASFGTLASQNAPTFGSLSQQTSGFGTPSSGFAGFGSGTGAFTFGSSNSSVQ 2078
Query: 321 GLN 323
G
Sbjct: 2079 GFG 2081
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 113/275 (41%), Gaps = 56/275 (20%)
Query: 63 NTSTAQPATSLFGATENKPLFG------QSTTTFGQPTNTFGTTN-SLFGKPNTG----F 111
NT+TA AT +FG S++ FG P FG + +FG+ G F
Sbjct: 1671 NTATAPSATPVFGQVAASITSTAAATPQASSSGFGSPA--FGASAPGVFGQTAFGQTPAF 1728
Query: 112 GAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFG 171
G A S+ ++ FSF+ QP +++ FG + T + N AT++ +P + FG
Sbjct: 1729 GQATSSPASGFSFS-----QPGFSSVPAFGQSVSSTPASTSANVFGATSSTSSPGSFSFG 1783
Query: 172 SFGTNQNQSLNFNQNKPTFNLGGSTTSTGFG-----FGTNTATNNT-----------SLF 215
TN +L N P F S GFG FG +AT +T S F
Sbjct: 1784 QASTNTGGTLFGQNNPPAFG-----QSPGFGQGSSVFGGTSATTSTAAPSGFSFCQASGF 1838
Query: 216 GQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTT-PNTSLA 274
G + FG NT + FG + +F S N G F+ P+ A
Sbjct: 1839 GSSNTGSVFGQAANTG-----GSVFGQSSTSSGGVFGSGNATRGGGFFSGLGGKPSQDAA 1893
Query: 275 N-NAFS--GTLFGNTAKPAGLFGNSTNTGGLFGNS 306
N N FS G FG+TA P NT LFGNS
Sbjct: 1894 NKNPFSSAGGGFGSTAAP--------NTSNLFGNS 1920
>sp|P49790|NU153_HUMAN Nuclear pore complex protein Nup153 OS=Homo sapiens GN=NUP153 PE=1
SV=2
Length = 1475
Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 130/279 (46%), Gaps = 59/279 (21%)
Query: 59 MFGTNTSTAQP--ATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVS 116
+FG++TS++ P AT +FG + N P+ S++ FG + + + LF + + +
Sbjct: 1211 IFGSSTSSSNPPVATFVFGQSSN-PV---SSSAFGNTAESSTSQSLLFSQDS----KLAT 1262
Query: 117 TQSNTFSFNPTTFG---QPNTTAIKPFGAAAPQTSN------LFATNTS--QATTAFGAP 165
T S + P FG N T FG A TS+ +F T S A+ AFGA
Sbjct: 1263 TSSTGTAVTPFVFGPGASSNNTTTSGFGFGATTTSSSAGSSFVFGTGPSAPSASPAFGAN 1322
Query: 166 QTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLF--GQKPATNT 223
QT FG QS +Q P GFG+ +++T+LF G +PA T
Sbjct: 1323 QTPTFG-------QSQGASQPNPP------------GFGS--ISSSTALFPTGSQPAPPT 1361
Query: 224 FGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKP--TPGFQFNTNTTPNTSLANNAFSG- 280
FG ++++ P FG QP+Q++ F S P + FQF ++TT N + NN+ SG
Sbjct: 1362 FGTVSSSSQP----PVFGQQPSQSA--FGSGTTPNSSSAFQFGSSTT-NFNFTNNSPSGV 1414
Query: 281 -TLFGNTAKPAGLFGNSTNTGGLFGNS----TFGSNTGN 314
T N++ PA S + G F S T GSN N
Sbjct: 1415 FTFGANSSTPAASAQPSGSGGFPFNQSPAAFTVGSNGKN 1453
>sp|P40477|NU159_YEAST Nucleoporin NUP159 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP159 PE=1 SV=1
Length = 1460
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 45/192 (23%)
Query: 46 ATGSFFGTTPQPSM----FGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTN 101
A+GS FG +PS FG+ S+ +P S G+ KP FG + G + +
Sbjct: 545 ASGSAFG---KPSFGTPSFGSGNSSVEPPAS--GSAFGKPSFGTPSFGSGNSSAEPPASG 599
Query: 102 SLFGKPNTG---FGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAA--APQTSNLFATNTS 156
S FGKP+ G FG A S ++N+ S FG+ FG++ AP + LF +N +
Sbjct: 600 SAFGKPSFGTSAFGTASSNETNSGSI----FGK------AAFGSSSFAPANNELFGSNFT 649
Query: 157 QATTAFGAPQ----TSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNT 212
+ +P+ TS F S G +Q++ ++ST FG NT+T
Sbjct: 650 ISKPTVDSPKEVDSTSPFPSSG---------DQSEDESKSDVDSSSTPFGTKPNTST--- 697
Query: 213 SLFGQKPATNTF 224
KP TN F
Sbjct: 698 -----KPKTNAF 704
>sp|P35658|NU214_HUMAN Nuclear pore complex protein Nup214 OS=Homo sapiens GN=NUP214 PE=1
SV=2
Length = 2090
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 73 LFGATENKPLFGQSTTTFGQ--PTNTF----GTTNSL---FGKPNT--GFGAAVSTQSNT 121
LFG + K G ++++FG+ PT TF G+ S F PN GFGAA
Sbjct: 1921 LFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAA-----PV 1975
Query: 122 FSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSL 181
F PT G P + FG+A TS L +T A GFG FG++ N +
Sbjct: 1976 FGSPPTFGGSPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFG-FGSSSN-TT 2033
Query: 182 NF----NQNKPTFNLGGSTTSTGFGFGTN 206
+F +QN PTF GS + GFGT
Sbjct: 2034 SFGTLASQNAPTF---GSLSQQTSGFGTQ 2059
Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 73/184 (39%), Gaps = 52/184 (28%)
Query: 139 PFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNL---GGS 195
PF +A + +T TS + FG FG F ++ +F + KPT GGS
Sbjct: 1902 PFSSA---SGGFGSTATSNTSNLFGNSGAKTFGGFASS-----SFGEQKPTGTFSSGGGS 1953
Query: 196 TTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFN 255
S GFGF ++ N T FG P FG P FG S FG PA F S
Sbjct: 1954 VASQGFGF---SSPNKTGGFGAAP---VFGSPPT----FGGSPGFGGVPA-----FGS-- 1996
Query: 256 KPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNA 315
P F +T G +FG G + + G FG FGS++ N
Sbjct: 1997 --APAFTSPLGST----------GGKVFGE--------GTAAASAGGFG---FGSSS-NT 2032
Query: 316 NTFG 319
+FG
Sbjct: 2033 TSFG 2036
>sp|Q09847|NU146_SCHPO Nucleoporin nup146 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup146 PE=1 SV=1
Length = 1325
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 95/233 (40%), Gaps = 38/233 (16%)
Query: 75 GATENKPLFGQSTT-----TFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTF 129
GA N P+FGQ +T FGQP+ FG +FG+P + FG + +FSF +
Sbjct: 510 GAKSNTPVFGQPSTFGQAPVFGQPS-AFGQA-PVFGQP-SAFGQS------SFSFGTSNM 560
Query: 130 GQPNT--TAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQS--LNFN- 184
Q T P AA + TN +A T+ A + F F +Q+ + LNF+
Sbjct: 561 NQKLDFGTFKSPLSGAATGEAK---TNLEKAVTS--ASGKASFTGFAPSQSTTSGLNFDS 615
Query: 185 ---QNKPTFNLGGSTTST----GFGFGTNT--ATNNTSLFGQKPATNTFGLPTNTASPFG 235
N+ G S ST GF F NT A N T L + P
Sbjct: 616 IPKDNEAASIFGSSQVSTKNTSGFQFSNNTLLADNVDEDIESDHDTKIEELANSDVEP-S 674
Query: 236 TSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAK 288
T + G + ++ F S KP P F F ++ FS +FG TA+
Sbjct: 675 TEQNIGGDVSWGASTFQS--KPQPSFSFGLTLDDKSNTPGKNFS--IFGKTAE 723
>sp|P14907|NSP1_YEAST Nucleoporin NSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NSP1 PE=1 SV=1
Length = 823
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 172 SFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTA 231
+FG+N + F + PT N+ GS ST FG+N+A TSLFG A T T
Sbjct: 63 AFGSNNTGNTAFGNSNPTSNVFGSNNSTTNTFGSNSA--GTSLFGSSSAQQTKSNGTAGG 120
Query: 232 SPFGTSTSFG-------AQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFG 284
+ FG+S+ F +PA F N TP N NT+ N LFG
Sbjct: 121 NTFGSSSLFNNSTNSNTTKPAFGGLNFGGGNNTTPSSTGNANTSNN-----------LFG 169
Query: 285 NTA---KPAGLFGNSTN 298
TA KPA FG +TN
Sbjct: 170 ATANANKPAFSFGATTN 186
>sp|P20676|NUP1_YEAST Nucleoporin NUP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP1 PE=1 SV=1
Length = 1076
Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 121/289 (41%), Gaps = 60/289 (20%)
Query: 90 FGQPTNTFGTTNSL----FGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKP------ 139
G+PT+ G T S FG NT G S S +FSFN G TT
Sbjct: 784 LGKPTDATGNTTSKSAFSFGTANTN-GTNASANSTSFSFNAPATGNGTTTTSNTSGTNIA 842
Query: 140 --FGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLG--GS 195
F P S + + NT+ A +AFG +SG + G NQS +FN G G+
Sbjct: 843 GTFNVGKPDQS-IASGNTNGAGSAFGF-SSSGTAATGAASNQS--------SFNFGNNGA 892
Query: 196 TTSTGFGFGTNTATNNTSLFGQKPATNT--------FGLPTNTASPFGTSTSFGAQPAQT 247
F T++ N LF + P+TN F N ++P G S
Sbjct: 893 GGLNPFTSATSSTNANAGLFNKPPSTNAQNVNVPSAFNFTGNNSTPGGGSVFNMNGNTNA 952
Query: 248 STLF-NSFNKP----TPGFQFNTNTTPNTSLANNAFSGTLFG--NTA----KPAGLFG-- 294
+T+F S N+P TP F N++ TP+T + N FSG G NTA +P+ +FG
Sbjct: 953 NTVFAGSNNQPHQSQTPSFNTNSSFTPST-VPNINFSGLNGGITNTATNALRPSDIFGAN 1011
Query: 295 -------NSTNTGGLFGNS------TFGSNTGNANTFGQGLNSSFNLGG 330
N TN +FG + +FG N G G N+ ++GG
Sbjct: 1012 AASGSNSNVTNPSSIFGGAGGVPTTSFGQPQSAPNQMGMGTNNGMSMGG 1060
>sp|Q555D2|Y6503_DICDI Uncharacterized protein DDB_G0274915 OS=Dictyostelium discoideum
GN=DDB_G0274915 PE=4 SV=2
Length = 1839
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 13/58 (22%)
Query: 111 FGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTS 168
FGA ST S F +P FG P +T+ PFGA TS ++T FGAPQ S
Sbjct: 1657 FGAPSSTSSTPFGASP--FGAPTSTSSPPFGAP-----------TSASSTPFGAPQIS 1701
>sp|Q09904|NU124_SCHPO Nucleoporin nup124 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup124 PE=1 SV=1
Length = 1159
Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 172 SFGTNQNQSLNFNQNKPTFNLGGSTT-----STGFGFGTNTATNNTSLFG-QKPATNT-- 223
SFG + N S+N +N P G T +GF FG N + S+FG PA ++
Sbjct: 965 SFGAS-NSSMNKEENTPMAKDAGDTAPASGFKSGFSFGANNSPQPASMFGTSTPAPSSAF 1023
Query: 224 -FG--LPTNTASPFG----TSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLA-N 275
FG TN A+P G T+T+ P+ T S T F TPN S + N
Sbjct: 1024 AFGNQSGTNPAAPAGFGGITNTATNNPPSTGFTFTPSNAGSTAAPMFGAGNTPNPSGSIN 1083
Query: 276 NAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTF 335
NA FG + +P+ N +TG FG +T + +A+ FNLG +++
Sbjct: 1084 NASQAFAFG-SGEPSNPASNPPSTGFSFGAATPSAFNASASQSPAPNGIQFNLGSSNSQT 1142
Query: 336 NNP 338
N P
Sbjct: 1143 NAP 1145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,976,703
Number of Sequences: 539616
Number of extensions: 19470647
Number of successful extensions: 61690
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 762
Number of HSP's that attempted gapping in prelim test: 50067
Number of HSP's gapped (non-prelim): 6219
length of query: 1121
length of database: 191,569,459
effective HSP length: 128
effective length of query: 993
effective length of database: 122,498,611
effective search space: 121641120723
effective search space used: 121641120723
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)