Query psy17507
Match_columns 1121
No_of_seqs 487 out of 897
Neff 5.8
Searched_HMMs 29240
Date Sat Aug 17 00:21:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q5x_A Nuclear pore complex pr 100.0 2E-59 6.9E-64 473.1 15.5 155 543-700 1-155 (155)
2 1ko6_A Nuclear pore complex pr 100.0 1.9E-55 6.6E-60 454.7 16.3 155 536-693 33-187 (187)
3 3nf5_A Nucleoporin NUP116; nuc 100.0 3.9E-53 1.3E-57 428.2 14.7 146 542-694 7-156 (164)
4 3pbp_B Nucleoporin NUP116/NSP1 100.0 6.4E-52 2.2E-56 414.8 16.4 141 548-695 2-146 (148)
5 3kep_A Nucleoporin NUP145; nuc 100.0 2.1E-51 7.3E-56 419.1 14.7 146 544-695 15-168 (174)
6 3bg1_B Nucleoporin NUP145; NPC 100.0 6.9E-33 2.4E-37 323.2 10.0 187 919-1121 73-272 (442)
7 3jro_A Fusion protein of prote 99.9 4.8E-26 1.6E-30 282.4 10.9 176 937-1121 392-581 (753)
8 3mmy_B Nuclear pore complex pr 99.1 1E-11 3.5E-16 102.8 0.7 31 7-37 26-56 (56)
9 1ko6_B Nuclear pore complex pr 96.9 0.00018 6.3E-09 61.5 0.8 44 694-740 1-49 (64)
10 3mzk_B Protein transport prote 89.9 0.24 8.1E-06 58.1 5.0 76 1027-1104 153-232 (441)
11 2pm7_A Protein WEB1, protein t 80.3 1.6 5.4E-05 50.6 5.6 74 1026-1104 145-218 (399)
12 3iko_C Nucleoporin NUP84; NPC, 68.1 4.6 0.00016 47.5 5.4 79 1026-1104 179-272 (460)
13 2qx5_A Nucleoporin NIC96; mRNA 32.6 28 0.00095 42.8 4.2 76 1027-1102 155-240 (661)
14 3lvj_C Sulfurtransferase TUSA; 20.7 86 0.0029 27.7 4.0 31 662-692 50-80 (82)
No 1
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C
Probab=100.00 E-value=2e-59 Score=473.14 Aligned_cols=155 Identities=46% Similarity=0.876 Sum_probs=148.3
Q ss_pred CceecCCCeeecCCHHHHHhcccCCCCceeccceEeeceeEEEEECccccccCCCccCccceEEEecceEEEccCCCCCC
Q psy17507 543 DFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKP 622 (1121)
Q Consensus 543 ~~~l~~~~Y~~~Ps~~~L~~m~~~~gl~~V~~F~Igr~gyG~I~f~~pvDL~~~~~~~ld~iV~~~~k~v~VYpd~~~kP 622 (1121)
||+|+++||||+|||+||++|++++++|+|+||+|||+|||+|+|++||||++|| ||+||+|++++|+||||++.||
T Consensus 1 gi~l~~~~Y~~~PsieeL~~~~~~~~~~~V~~FtVgR~gyG~I~f~~pvDl~~ld---Ld~IV~~~~~~v~VYpd~~~KP 77 (155)
T 2q5x_A 1 GIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLN---LDDIVHIRRKEVVVYLDDNQKP 77 (155)
T ss_dssp CCBCCSTTEEEESCHHHHHHHSCTTSCCEEEEEEEEETTTEEEEEEEEEECTTCB---HHHHEEEETTEEEECC----CC
T ss_pred CcEEeCCCeEEcCCHHHHHhhhhhccccEECCEEEEeeeEEEEEeCcceeeccCC---cccEEEEccCEEEEeCCCCCCC
Confidence 6899999999999999999999898779999999999999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCcceEEEecccccCCCCCcccccchhhhhhhhHHHHHHHHhhcCCCEEEEEeCCCCEEEEEeCceeeecCCC
Q psy17507 623 PVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLE 700 (1121)
Q Consensus 623 p~G~GLN~~A~ItL~~~~p~dk~t~~~i~d~~~~~~~~~~~~l~~~~~~~~~~Fv~Yd~~tG~W~F~V~HFs~ygl~d 700 (1121)
|+|+||||||+|||++|||+||.++++|+||+++.+++|++||+|+|+++||+||+||++||+|||+|+|||+|||+|
T Consensus 78 pvG~GLN~~A~ITL~~~~P~~k~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~FvsYd~~tG~W~F~V~HFS~ygl~d 155 (155)
T 2q5x_A 78 PVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD 155 (155)
T ss_dssp CTTBTTBSCEEEEECSCCCBCTTTCCBCCCHHHHHHTTHHHHHHHHHHHTTCEEEEEETTTTEEEEEESSCSCEECCC
T ss_pred CCCCCcCcCEEEEEeeeEecCCCcCccccCcchhhhHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeCCccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=100.00 E-value=1.9e-55 Score=454.68 Aligned_cols=155 Identities=44% Similarity=0.813 Sum_probs=150.2
Q ss_pred CCCCCCCCceecCCCeeecCCHHHHHhcccCCCCceeccceEeeceeEEEEECccccccCCCccCccceEEEecceEEEc
Q psy17507 536 TSEGDTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLY 615 (1121)
Q Consensus 536 ~~~~~~~~~~l~~~~Y~~~Ps~~~L~~m~~~~gl~~V~~F~Igr~gyG~I~f~~pvDL~~~~~~~ld~iV~~~~k~v~VY 615 (1121)
+..+||+|++|+++||||+|||+||++|+++||||+|+||+|||+|||+|+|++||||++|| ||+||+|++|+|+||
T Consensus 33 ~~~~~p~g~~L~~~~Y~~~PSieeL~~~~~~~~l~~V~~FtVGR~gyG~I~f~~pVDL~~ld---Ld~IV~f~~k~v~VY 109 (187)
T 1ko6_A 33 SYHMHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLN---LDDIVHIRRKEVVVY 109 (187)
T ss_dssp ---CCSSCCBCCSTTEEEESCHHHHHHHSCTTSCCEESSEEEEETTTEEEEECSCEECTTCB---HHHHEEEETTEEEES
T ss_pred CcccCCCCceecCCCeeECCCHHHHHhhcchhhhceecceEEEeeeEEEEEeCCceeeccCC---cceEEEeccCEEEEe
Confidence 45689999999999999999999999999998899999999999999999999999999999 999999999999999
Q ss_pred cCCCCCCCCCCCCCcceEEEecccccCCCCCcccccchhhhhhhhHHHHHHHHhhcCCCEEEEEeCCCCEEEEEeCce
Q psy17507 616 PDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHF 693 (1121)
Q Consensus 616 pd~~~kPp~G~GLN~~A~ItL~~~~p~dk~t~~~i~d~~~~~~~~~~~~l~~~~~~~~~~Fv~Yd~~tG~W~F~V~HF 693 (1121)
||+..|||+|+||||||+|||++|||+||+++++|+||+++.+++|++||+|+|+++||+||+||++||+|||+|+||
T Consensus 110 pd~~~KPpvG~GLN~pA~ITL~~~~P~dk~~~~~i~d~~~~~~~~~~~~l~r~~~~~ga~FvsYd~~tG~W~F~V~HF 187 (187)
T 1ko6_A 110 LDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHF 187 (187)
T ss_dssp SSTTSCCCTTSTTSSCEEEEECSCCCCCTTTCSCCCCHHHHHHHTHHHHHHHHHHHTTCEEEEEEGGGTEEEEEESCC
T ss_pred CCCCCCCCCCCCcCcCEEEEEeeeEecCCCCCccccCcchhhHHHHHHHHHHHHhcCCCEEEEEeCCCcEEEEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
No 3
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=100.00 E-value=3.9e-53 Score=428.24 Aligned_cols=146 Identities=32% Similarity=0.592 Sum_probs=139.5
Q ss_pred CCceecCCCeeecCCHHHHHhcccCCCCceeccceEeeceeEEEEECccccccCCCccCccc----eEEEecceEEEccC
Q psy17507 542 FDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDS----IVEFRFKEVVLYPD 617 (1121)
Q Consensus 542 ~~~~l~~~~Y~~~Ps~~~L~~m~~~~gl~~V~~F~Igr~gyG~I~f~~pvDL~~~~~~~ld~----iV~~~~k~v~VYpd 617 (1121)
++|+|+++||||+||||||++|+++| ||+|+||+|||+|||+|+|++||||++|| ||+ ||+|++|+|+||||
T Consensus 7 ~~~~lt~~~Y~~~PSleeL~~m~~~~-l~~V~nFtVGR~gyG~I~F~~pVDL~~ld---Ld~i~g~iV~f~~k~v~VYpd 82 (164)
T 3nf5_A 7 DDLEFVDENYYISPSLDTLATLSKYE-IQKVENLVVGNKQYGKIEFLDPVDLSDIP---LGSICDDLVVFQPMSVLLYNN 82 (164)
T ss_dssp TBCCCCCCSEEEESCHHHHHHCCHHH-HTSBCSCEEEETTTEEEEESSCBCCTTCC---GGGTBTTTEEEETTEEEESTT
T ss_pred cceEEecCCEEEcCCHHHHHhcCHHH-hCcCCCeEEeeceEEEEEeCCceeccccC---hhHhcCCEEEEecCEEEEeCC
Confidence 67899999999999999999999999 99999999999999999999999999999 877 89999999999999
Q ss_pred CCCCCCCCCCCCcceEEEecccccCCCCCcccccchhhhhhhhHHHHHHHHhhcCCCEEEEEeCCCCEEEEEeCcee
Q psy17507 618 DANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFS 694 (1121)
Q Consensus 618 ~~~kPp~G~GLN~~A~ItL~~~~p~dk~t~~~i~d~~~~~~~~~~~~l~~~~~~~~~~Fv~Yd~~tG~W~F~V~HFs 694 (1121)
++.|||+|+||||||+|||++|||+||+||+||+||+++..++|+++|++ ++|++||+|||+||+|||+|+||-
T Consensus 83 ~~~KPpvG~GLNvpA~ITL~~~~P~dk~t~~pi~d~~~~~~~~~i~rLk~---~~g~~FvsYd~~tG~W~F~V~H~~ 156 (164)
T 3nf5_A 83 STNVPEKGKGLNVRARISCYNCYPLDKSTRKPIKDPNHRIMERYSEKLKK---IPHTHFESYDPASGTYCFTVDHAL 156 (164)
T ss_dssp CSCCCCTTSTTCSCEEEEECSCCCBCTTTCCBCCCTTSTHHHHHHHHHHH---CTTCEEEEEETTTTEEEEEESSTT
T ss_pred cCCCCCCCCCcCcCEEEEEeeeEcCCCCCCccccCcchHHHHHHHHHHhc---cCCCEEEEEeCCCcEEEEEEcccc
Confidence 99999999999999999999999999999999999999877777777765 699999999999999999999994
No 4
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=100.00 E-value=6.4e-52 Score=414.75 Aligned_cols=141 Identities=30% Similarity=0.552 Sum_probs=133.4
Q ss_pred CCCeeecCCHHHHHhcccCCCCceeccceEeeceeEEEEECccccccCCCccCccc----eEEEecceEEEccCCCCCCC
Q psy17507 548 RKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDS----IVEFRFKEVVLYPDDANKPP 623 (1121)
Q Consensus 548 ~~~Y~~~Ps~~~L~~m~~~~gl~~V~~F~Igr~gyG~I~f~~pvDL~~~~~~~ld~----iV~~~~k~v~VYpd~~~kPp 623 (1121)
++||||+|||+||++|+++| |++|+||+|||+|||+|+|++||||++|+ ||+ ||+|++|+|+||||++.|||
T Consensus 2 ~~~Y~~~PsleeL~~m~~~~-l~~V~~F~VGR~gyG~I~f~~pVDL~~l~---Ld~i~g~iV~f~~~~v~VYpd~~~KPp 77 (148)
T 3pbp_B 2 NENYYISPSLDTLSSYSLLQ-LRKVPHLVVGHKSYGKIEFLEPVDLAGIP---LTSLGGVIITFEPKTCIIYANLPNRPK 77 (148)
T ss_dssp CTTEEEESCHHHHHHSCSST-TSSBCSCEEEETTTEEEEESSCBCCTTSC---TTHHHHTSEEEETTEEEESCSSCCCCC
T ss_pred CCCeEEcCCHHHHHhcCHHH-hccCCCeEEEeccEEEEEeCCceeccccC---hhhhcCCEEEEecCEEEEeCCccCCCC
Confidence 68999999999999999999 99999999999999999999999999999 887 99999999999999999999
Q ss_pred CCCCCCcceEEEecccccCCCCCcccccchhhhhhhhHHHHHHHHhhcCCCEEEEEeCCCCEEEEEeCceee
Q psy17507 624 VGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSK 695 (1121)
Q Consensus 624 ~G~GLN~~A~ItL~~~~p~dk~t~~~i~d~~~~~~~~~~~~l~~~~~~~~~~Fv~Yd~~tG~W~F~V~HFs~ 695 (1121)
+|+||||||+|||++|||+||.+++||+||+|... +++|+|+++++|++||+||++||+|||+|+||..
T Consensus 78 ~G~GLN~pA~ITL~~~~P~dk~t~~~i~d~~~~~~---~~~i~rlk~~~g~~FvsYd~~tG~W~F~V~Hf~~ 146 (148)
T 3pbp_B 78 RGEGINVRARITCFNCYPVDKSTRKPIKDPNHQLV---KRHIERLKKNPNSKFESYDADSGTYVFIVNHAAE 146 (148)
T ss_dssp TTSTTCSCEEEEESCCCCBCTTTCCBCCCTTSHHH---HHHHHHHTSCSSSEEEEECTTTCCEEEEESCSCC
T ss_pred CCCCcCcCEEEEEeeeEcCCCCCcccccCcchHHH---HHHHHHHhhcCCCEEEEEeCCCcEEEEEeeeeee
Confidence 99999999999999999999999999999999754 4556666678999999999999999999999963
No 5
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A*
Probab=100.00 E-value=2.1e-51 Score=419.15 Aligned_cols=146 Identities=36% Similarity=0.665 Sum_probs=127.0
Q ss_pred ceecCCCeeecCCHHHHHhcccCCCCceeccceEeeceeEEEEECccccccCC--CccCcc-----ceEEEe-cceEEEc
Q psy17507 544 FKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISEL--NNVDLD-----SIVEFR-FKEVVLY 615 (1121)
Q Consensus 544 ~~l~~~~Y~~~Ps~~~L~~m~~~~gl~~V~~F~Igr~gyG~I~f~~pvDL~~~--~~~~ld-----~iV~~~-~k~v~VY 615 (1121)
++|+++||||+||||||++|+++| ||+|+||+|||+|||+|+|++||||++| | || +||+|+ +|+|+||
T Consensus 15 ~kl~~~gY~~~PSleeL~~ms~~~-L~~V~nFtVGR~gyG~I~F~~pVDLs~l~~D---Ld~~l~g~IV~f~~~~~v~VY 90 (174)
T 3kep_A 15 EKSSSFGYWCSPSPEQLERLSLKQ-LAAVSNFVIGRRGYGCITFQHDVDLTAFTKS---FREELFGKIVIFRSSKTVEVY 90 (174)
T ss_dssp -----CCEEEESCHHHHHTSCTTG-GGSBSSCEEEETTTEEEEESSCBCCGGGTTC---HHHHHBTTTEEEETTTEEEEC
T ss_pred ceeCCCCEEEcCCHHHHHhcCHHH-hcccCCeEEeeceEEEEEeCCcEEhhhcccc---hhhhcCCcEEEECCCCEEEEe
Confidence 489999999999999999999998 9999999999999999999999999999 6 76 599999 9999999
Q ss_pred cCCCCCCCCCCCCCcceEEEecccccCCCCCcccccchhhhhhhhHHHHHHHHhhcCCCEEEEEeCCCCEEEEEeCceee
Q psy17507 616 PDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSK 695 (1121)
Q Consensus 616 pd~~~kPp~G~GLN~~A~ItL~~~~p~dk~t~~~i~d~~~~~~~~~~~~l~~~~~~~~~~Fv~Yd~~tG~W~F~V~HFs~ 695 (1121)
||++.|||+|+||||||+|||+||||+||+|++||+||+++. ++.++|+|+++++||+||+|||+||+|||+|+||-.
T Consensus 91 pd~~~KPpvG~GLNvpA~ITL~~~~P~dk~t~~pi~d~~~l~--~~~~~i~rLk~~~g~~FisYd~~tG~W~F~V~H~~~ 168 (174)
T 3kep_A 91 PDEATKPMIGHGLNVPAIITLENVYPVDKKTKKPMKDTTKFA--EFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHFEG 168 (174)
T ss_dssp CSTTTCCCTTSTTCSCEEEEESSCCCC----CCCCCCTTCHH--HHHHHHHHHHHCSSSEEEEEETTTTEEEEEESCCC-
T ss_pred CCCCCCCCCCCCcCcCEEEEEeeeEeCCCCCCccccCchhhH--HHHHHHHHHhhcCCCEEEEEeCCCcEEEEEEecccC
Confidence 999999999999999999999999999999999999999953 344456666668999999999999999999999953
No 6
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=99.97 E-value=6.9e-33 Score=323.20 Aligned_cols=187 Identities=20% Similarity=0.257 Sum_probs=156.5
Q ss_pred Hhhhcccceeeeeccccccccccccccc--C-CcccccChhHHHHHHHhhhhcCCCCchhhhhHHHhHhhhcCCCC-C--
Q psy17507 919 AKKLDRKFSITWLKYKRSFLMTCNDNLM--P-DDYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLD-A-- 992 (1121)
Q Consensus 919 ~~~i~~~L~i~~~~~~~~~L~~s~I~~~--~-~P~~~~~~~~~~i~~~~~~a~~~~~~~~e~~VW~L~saLfd~~~-~-- 992 (1121)
.+.+..+|+++ |+||.|..+ + ||++.++. ++ +++.++ ......|++.||+||+||||+.+ .
T Consensus 73 ~~~~~~~L~~~--------l~~s~i~~r~~~~~P~~~~~~-~~-f~~l~~---~~~~~~~e~~vW~L~saLf~~~~~~~~ 139 (442)
T 3bg1_B 73 FLFDDVYLDKE--------IEKVTIEARKSNPYPQISESS-LL-FKDALD---YMEKTSSDYNLWKLSSILFDPVSYPYK 139 (442)
T ss_dssp GGGSHHHHHHH--------HHTEEEEECTTSSCEEEEEEC-CC-HHHHHT---TSCTTSHHHHHHHHHHHHTSCCCCSSC
T ss_pred hhhHHHHHHHH--------HhcCeeeccCCCCCCeeecCc-cc-HHHHHh---hcccchHHhHHHHHHHHhcCCCcCccc
Confidence 46667788877 999999983 4 99998753 22 333222 12345789999999999999965 1
Q ss_pred --CCch--hhHHHHHHHHHHHHHHHHHhccCc-cc-cCCChHHHHHHHHcccCHHHHHHHHHHcCCceeehhhhhhcCCh
Q psy17507 993 --KNNS--HDINMKRKDNLTEWLESVMEENPK-SI-ASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSE 1066 (1121)
Q Consensus 993 --~~~~--~~~~~~Rr~~LS~WL~~~V~~~v~-~~-~~~~~~e~If~lLs~~~I~eA~~lA~~~~d~~LA~LlsQi~~~~ 1066 (1121)
++.. |++.++||++|++||++++...+. .+ ...+++|+||.|||+|||++||++|+++||+|||+||+|+|+++
T Consensus 140 ~~~~~~~~~~~~~~Rr~~l~~WL~~~~~~~v~~~~~~~~~~~e~i~~~L~~~~v~eA~~~Ai~~~d~rLA~Llsq~g~~~ 219 (442)
T 3bg1_B 140 TDNDQVKMALLKKERHCRLTSWIVSQIGPEIEEKIRNSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSND 219 (442)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHTCSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHTSCC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHCCCHHHHHHHHHHCCCcHHHHHHHHhcCCc
Confidence 1122 788899999999999999766552 22 46899999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccCCCCC
Q psy17507 1067 IGQAFM-QAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESLDWK 1121 (1121)
Q Consensus 1067 ~vR~l~-~~QL~~W~~~~~d~~I~~~~lkIY~LLAG~~~~~~s~~~Inv~e~LdWk 1121 (1121)
.+|++| ++||+.|++. +++|+++|+|||+||||+++ +...+.|+|||+||||
T Consensus 220 ~~r~~la~~QL~~W~~~--~~~I~~~~~kiY~LLAG~~~-e~~~~~~~i~~~LdW~ 272 (442)
T 3bg1_B 220 PRIRDLAELQLQKWSTG--GCSIDKNISKIYKLLSGSPF-EGLFSLKELESEFSWL 272 (442)
T ss_dssp HHHHHHHHHHHHHTTSS--CCCSCHHHHHHHHHHHSCST-TSTTCSGGGGGTSCHH
T ss_pred hHHHHHHHHHHHHHHHh--CccCCHHHHHHHHHhcCCcc-cccccchhcccCCCHH
Confidence 999999 9999999988 89999999999999999998 6566789999999996
No 7
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.8e-26 Score=282.39 Aligned_cols=176 Identities=21% Similarity=0.229 Sum_probs=142.3
Q ss_pred ccccccccccC---CcccccC-hhHHHHHHHhhhhcCCCCchhhhhHHHhHhhhcCCCCCC-------CchhhHHHHHHH
Q psy17507 937 FLMTCNDNLMP---DDYSDVS-NLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDAK-------NNSHDINMKRKD 1005 (1121)
Q Consensus 937 ~L~~s~I~~~~---~P~~~~~-~~~~~i~~~~~~a~~~~~~~~e~~VW~L~saLfd~~~~~-------~~~~~~~~~Rr~ 1005 (1121)
+++++.|..++ ||.+.++ ..|.++.+.+ ....+|+.||+||+||||+++.+ ..++++.++||+
T Consensus 392 ~~~~~~i~~r~~~~~p~~~~~~~~f~~~~~~~------~~~~~e~~~w~L~~~Lf~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (753)
T 3jro_A 392 EIEKVTIEARKSNPYPQISESSLLFKDALDYM------EKTSSDYNLWKLSSILFDPVSYPYKTDNDQVKMALLKKERHC 465 (753)
T ss_dssp HHTTEEEEECSSSSCEEEEEECCCGGGGGTTS------CSSSHHHHHHHHHHHHTSCCCCSSCCSSTTHHHHHHHHHHHH
T ss_pred HHhcCeeeccCCCCCCEeecCcCcHHHHHhhc------cCCchHHHHHHHHHHHcCCCcCCccccchHHHHHHHHHHHHH
Confidence 36667777772 9998754 3444443222 13458999999999999986611 123567899999
Q ss_pred HHHHHHHHHHhccCc-c-ccCCChHHHHHHHHcccCHHHHHHHHHHcCCceeehhhhhhcC-ChHHHHHHHHHHHHHHhc
Q psy17507 1006 NLTEWLESVMEENPK-S-IASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGC-SEIGQAFMQAQLSHYVNA 1082 (1121)
Q Consensus 1006 ~LS~WL~~~V~~~v~-~-~~~~~~~e~If~lLs~~~I~eA~~lA~~~~d~~LA~LlsQi~~-~~~vR~l~~~QL~~W~~~ 1082 (1121)
.|++||++.+...+. . ....+++++||.||++|||++||++|++++|+|||+||+|+++ |+.+|+++++||+.|++.
T Consensus 466 ~~~~wl~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~i~~A~~~a~~~~~~~la~ll~~~~~~~~~~~~~~~~Ql~~W~~~ 545 (753)
T 3jro_A 466 RLTSWIVSQIGPEIEEKIRNSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTG 545 (753)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCSCTTHHHHHHTTTTCHHHHHHHHHHTTCCHHHHHGGGCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 999999999766552 2 2355779999999999999999999999999999999999987 699999999999999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCccccCCCCccccccCCCCC
Q psy17507 1083 TSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESLDWK 1121 (1121)
Q Consensus 1083 ~~d~~I~~~~lkIY~LLAG~~~~~~s~~~Inv~e~LdWk 1121 (1121)
+ .+|+++++|||+||||+++++.. ....+|++||||
T Consensus 546 ~--~~i~~~~~~iy~llag~~~~~~~-~~~~~~~~l~W~ 581 (753)
T 3jro_A 546 G--CSIDKNISKIYKLLSGSPFEGLF-SLKELESEFSWL 581 (753)
T ss_dssp T--CCCCHHHHHHHHTSSSCCSSSTT-CCGGGGTTSCHH
T ss_pred C--CCCCHHHHHHHHHhCCCcccccc-chhhccCCCCHH
Confidence 7 79999999999999999987642 356778999996
No 8
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.10 E-value=1e-11 Score=102.77 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=29.8
Q ss_pred cceeeeeeccccccccCccchhhhhccccCC
Q psy17507 7 LILQKCTFIVREAEMHVPLPLILQKYVGTLQ 37 (1121)
Q Consensus 7 ~~~~~~I~~m~~y~~~s~eELR~edY~~~~~ 37 (1121)
..+||||++|++|++||+||||||||++|||
T Consensus 26 ~~~~qsIs~M~~Y~~~S~EELR~eDY~~grk 56 (56)
T 3mmy_B 26 STKHQCITAMKEYESKSLEELRLEDYQANRK 56 (56)
T ss_dssp EEEECCGGGSTTTTTSCHHHHHHHHHHTTCC
T ss_pred ceeEEEEecchhhhcCCHHHHHHHHHHccCC
Confidence 5799999999999999999999999999997
No 9
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=96.92 E-value=0.00018 Score=61.54 Aligned_cols=44 Identities=32% Similarity=0.440 Sum_probs=29.1
Q ss_pred eeecCCCCCccC---CCCCCCCCccCCC-CCCCCCCCCcchhhhh-cccCCC
Q psy17507 694 SKYGLLESDEEG---ESEPKKPKMFVST-PIQPPPAPHVETQTLI-KEKISP 740 (1121)
Q Consensus 694 s~ygl~d~d~~~---~~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 740 (1121)
|||||.|+|||| +.+++++|+++++ +.+. +.++++..+ .+.+++
T Consensus 1 SKYGL~DSDEEEe~~P~d~kkkKl~~a~~~~~~---q~~pLq~~~~~q~~~~ 49 (64)
T 1ko6_B 1 SKYGLQDSDEEEEEHPSKTSTKKLKTAPLPPAS---QTTPLQMALNGKPAPP 49 (64)
T ss_pred CCcCccccchhhhcCCCcchHHhhhcCCcchhh---cccccccccccccCCh
Confidence 799999999887 5677888898876 2221 335555554 444443
No 10
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=89.90 E-value=0.24 Score=58.11 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=55.8
Q ss_pred hHHHHHHHHcccCHHHHHHHHHHcCCceeehhhhhhcCChHHHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHhcCC
Q psy17507 1027 PEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSD----SFINKDILKLMLLTSGQ 1102 (1121)
Q Consensus 1027 ~~e~If~lLs~~~I~eA~~lA~~~~d~~LA~LlsQi~~~~~vR~l~~~QL~~W~~~~~d----~~I~~~~lkIY~LLAG~ 1102 (1121)
..++|-.+|..|++++|++.|++.+.+-.|++|+..++.+..++-+++-+. ++...- +.+....+-||++++|+
T Consensus 153 ~~~~I~~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~g~e~~~~V~~~y~~--~~~~~~~~~~~~~~~~Lr~Ly~v~sGn 230 (441)
T 3mzk_B 153 CQMRVLAFLQTGNHDEALRLALSKRDYAIALLVGSLMGKDRWSEVIQKYLY--EGFTAGPNDQKELAHFLLLIFQVFVGN 230 (441)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHH--CC------CTHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCcHHHHHHHHHhcCHHHHHHHHHHHHH--hhcccCCccccccccHHHHHHHHHcCC
Confidence 568999999999999999999999999999999988775554444443332 222111 12445678899999998
Q ss_pred cc
Q psy17507 1103 PL 1104 (1121)
Q Consensus 1103 ~~ 1104 (1121)
.-
T Consensus 231 ~~ 232 (441)
T 3mzk_B 231 SK 232 (441)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 11
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=80.33 E-value=1.6 Score=50.57 Aligned_cols=74 Identities=9% Similarity=-0.010 Sum_probs=54.9
Q ss_pred ChHHHHHHHHcccCHHHHHHHHHHcCCceeehhhhhhcCChHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCcc
Q psy17507 1026 DPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGCSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPL 1104 (1121)
Q Consensus 1026 ~~~e~If~lLs~~~I~eA~~lA~~~~d~~LA~LlsQi~~~~~vR~l~~~QL~~W~~~~~d~~I~~~~lkIY~LLAG~~~ 1104 (1121)
+..+.|-.+|..|++++|+++|++.+-+--|++|+..++.+..++-.++.-.. +.. .-++-.+-||.+++++..
T Consensus 145 ~~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~--k~~---~~~~~~rll~~iv~~n~~ 218 (399)
T 2pm7_A 145 NIEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNAYFA--KYG---SKSSLSRILYSISKREVD 218 (399)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHH--HHT---TSCHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHH--hcc---cCchHHHHHHHHHccCHH
Confidence 45777889999999999999999999999999999999877773444433111 111 123455668888888775
No 12
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=68.14 E-value=4.6 Score=47.52 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=53.6
Q ss_pred ChHHHHHHHHcccCHHHHHHHHHHcCCceeehhhhhh--cCChHHHHHHH---------HHHHHHHhc----CCCCCCCH
Q psy17507 1026 DPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSML--GCSEIGQAFMQ---------AQLSHYVNA----TSDSFINK 1090 (1121)
Q Consensus 1026 ~~~e~If~lLs~~~I~eA~~lA~~~~d~~LA~LlsQi--~~~~~vR~l~~---------~QL~~W~~~----~~d~~I~~ 1090 (1121)
.....||.+|-+|+++||++++.+.|++=+|..|.=. -.||.+-..+. ..-..||+. --...+++
T Consensus 179 ~l~~~i~~liR~G~~~eA~~lc~~~gq~WRAasL~G~~~~~dP~~~~~~~~e~~~~~Gn~~r~LWkr~c~~lA~~~~~~~ 258 (460)
T 3iko_C 179 IFFKYIYELILAGAIDEALEEAKLSDNISICMILCGIQEYLNPVIDTQIANEFNTQQGIKKHSLWRRTVYSLSQQAGLDP 258 (460)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHTTSBCBCTTTSGGGTTTCSSCBSBTTHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHcccccccCcccccccccccccccCchhHHHHHHHHHHHHhCCCCCH
Confidence 3567899999999999999999999999888877311 11332211110 012334321 01257889
Q ss_pred HHHHHHHHhcCCcc
Q psy17507 1091 DILKLMLLTSGQPL 1104 (1121)
Q Consensus 1091 ~~lkIY~LLAG~~~ 1104 (1121)
.=|.||.+|+|++-
T Consensus 259 yERAvY~~LsG~l~ 272 (460)
T 3iko_C 259 YERAIYSYLSGAIP 272 (460)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHhCCch
Confidence 99999999999876
No 13
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.64 E-value=28 Score=42.81 Aligned_cols=76 Identities=13% Similarity=-0.021 Sum_probs=41.6
Q ss_pred hHHHHHHHHcccCHHHHHHHHHHcCCc------eeehhhhhhc--CChHHHHHHHHHH-HHHHhc-CCCCCCCHHHHHHH
Q psy17507 1027 PEQNIFQLVTQHKLHEAIVSAQQSDNF------YLSGALSMLG--CSEIGQAFMQAQL-SHYVNA-TSDSFINKDILKLM 1096 (1121)
Q Consensus 1027 ~~e~If~lLs~~~I~eA~~lA~~~~d~------~LA~LlsQi~--~~~~vR~l~~~QL-~~W~~~-~~d~~I~~~~lkIY 1096 (1121)
.-..||.||-||++++|.+.+.++++. .++.++.-.. .+...-..++.+| ..|++. +.-..+|+-.+.+|
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY 234 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVY 234 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC------------------------------CHHHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 467899999999999999999988764 4566665533 2444555566665 346552 21124899999999
Q ss_pred HHhcCC
Q psy17507 1097 LLTSGQ 1102 (1121)
Q Consensus 1097 ~LLAG~ 1102 (1121)
.||.+.
T Consensus 235 ~Iig~c 240 (661)
T 2qx5_A 235 KLIGRC 240 (661)
T ss_dssp HHHHTC
T ss_pred HHHhcc
Confidence 999775
No 14
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=20.65 E-value=86 Score=27.71 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCEEEEEeCCCCEEEEEeCc
Q psy17507 662 EAIVIRACTRMNVEFVSYQPETGSWCFKVQH 692 (1121)
Q Consensus 662 ~~~l~~~~~~~~~~Fv~Yd~~tG~W~F~V~H 692 (1121)
.+-|.++|++.|-++++.+.+.|.|+|.|..
T Consensus 50 ~~di~~~~~~~G~~~~~~~~~~~~~~i~I~K 80 (82)
T 3lvj_C 50 TRDIPGFCTFMEHELVAKETDGLPYRYLIRK 80 (82)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSSSEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEEecCCEEEEEEEE
Confidence 4568888899999999999899999998864
Done!