RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17507
(1121 letters)
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis,
precursor, protein transport; 1.90A {Homo sapiens} PDB:
2q5y_A 3tkn_C
Length = 155
Score = 208 bits (530), Expect = 2e-62
Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 3/156 (1%)
Query: 545 KLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSI 604
LT+ GY+ P++++L ++ + G CIV FTIG + +GSI F ++ L N++LD I
Sbjct: 3 ILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVN---LTNLNLDDI 59
Query: 605 VEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAI 664
V R KEVV+Y DD KPPVG LNR A+VTL VWP DK++ LIK ++ ++NYE
Sbjct: 60 VHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGR 119
Query: 665 VIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLE 700
+ + +F Y+PETGSW FKV HF+KYGL +
Sbjct: 120 LEAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD 155
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis,
transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Length = 187
Score = 190 bits (483), Expect = 1e-55
Identities = 72/190 (37%), Positives = 106/190 (55%), Gaps = 4/190 (2%)
Query: 505 VAELKENISPSVKVSDLK-VIKSPLNTSIGSETSEGDTFDFKLTRKGYFVSPTLNELKQL 563
+A L+ + S + + I + + LT+ GY+ P++++L ++
Sbjct: 1 MAALRNGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKI 60
Query: 564 KTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSIVEFRFKEVVLYPDDANKPP 623
+ G CIV FTIG + +GSI F ++ L N++LD IV R KEVV+Y DD KPP
Sbjct: 61 TNEKGECIVSDFTIGRKGYGSIYFEGDVN---LTNLNLDDIVHIRRKEVVVYLDDNQKPP 117
Query: 624 VGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPET 683
VG LNR A+VTL VWP DK++ LIK ++ ++NYE + + +F Y+PET
Sbjct: 118 VGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPET 177
Query: 684 GSWCFKVQHF 693
GSW FKV HF
Sbjct: 178 GSWVFKVSHF 187
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast,
autoproteolysis, protein maturation, post-translational
modification; 1.82A {Saccharomyces cerevisiae} PDB:
3kes_A*
Length = 174
Score = 185 bits (471), Expect = 4e-54
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 531 SIGSETSEGDTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLES 590
S+ + E K + GY+ SP+ +L++L + V F IG +G I F
Sbjct: 2 SLNKQDGENTLQHEKSSSFGYWCSPSPEQLERL-SLKQLAAVSNFVIGRRGYGCITFQHD 60
Query: 591 IDISELN----NVDLDSIVEFRF-KEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKS 645
+D++ IV FR K V +YPD+A KP +G LN PA +TL V+P DK
Sbjct: 61 VDLTAFTKSFREELFGKIVIFRSSKTVEVYPDEATKPMIGHGLNVPAIITLENVYPVDKK 120
Query: 646 TGELIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLE 700
T + +KD K + + + ++SY P G+W FKV HF +
Sbjct: 121 TKKPMKDTTKFAEFQVF--DRKLRSMREMNYISYNPFGGTWTFKVNHFEGHHHHH 173
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural
genom 2, protein structure initiative; 1.94A {Candida
glabrata}
Length = 164
Score = 178 bits (453), Expect = 7e-52
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query: 537 SEGDTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISEL 596
S D + + Y++SP+L+ L L +K VE +G++++G I FL+ +D+S++
Sbjct: 2 SLDGIDDLEFVDENYYISPSLDTLATL-SKYEIQKVENLVVGNKQYGKIEFLDPVDLSDI 60
Query: 597 N-NVDLDSIVEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQK 655
D +V F+ V+LY + N P G LN A+++ +P DKST + IKD
Sbjct: 61 PLGSICDDLVVFQPMSVLLYNNSTNVPEKGKGLNVRARISCYNCYPLDKSTRKPIKDPNH 120
Query: 656 IKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSK 695
Y + + F SY P +G++CF V H +
Sbjct: 121 RIMERYSE---KLKKIPHTHFESYDPASGTYCFTVDHALE 157
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP
remodelling, nucleocytoplasmic transport, protein
transport; HET: PGE; 2.60A {Saccharomyces cerevisiae}
PDB: 2aiv_A
Length = 148
Score = 176 bits (447), Expect = 3e-51
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 548 RKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDL-DSIVE 606
+ Y++SP+L+ L V +GH+ +G I FLE +D++ + L I+
Sbjct: 2 NENYYISPSLDTLSSYSLLQL-RKVPHLVVGHKSYGKIEFLEPVDLAGIPLTSLGGVIIT 60
Query: 607 FRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAIVI 666
F K ++Y + N+P G +N A++T +P DKST + IKD + +
Sbjct: 61 FEPKTCIIYANLPNRPKRGEGINVRARITCFNCYPVDKSTRKPIKDPNHQL---VKRHIE 117
Query: 667 RACTRMNVEFVSYQPETGSWCFKVQHFSK 695
R N +F SY ++G++ F V H ++
Sbjct: 118 RLKKNPNSKFESYDADSGTYVFIVNHAAE 146
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB:
3bg0_B 3iko_B
Length = 442
Score = 114 bits (287), Expect = 5e-27
Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 20/243 (8%)
Query: 889 PVKFYQCRLSQKDSNITNDSNKNNFLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPD 948
KF + + L E +K + ++ + N P
Sbjct: 40 FAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKSNPYPQ 99
Query: 949 DYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDA-------KNNSHDINM 1001
S+ S LF + S D +WKL L+ + + +
Sbjct: 100 -ISESSLLF------KDALDYMEKTSSDYNLWKLSSILFDPVSYPYKTDNDQVKMALLKK 152
Query: 1002 KRKDNLTEWL-ESVMEENPKSIASK-DPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGAL 1059
+R LT W+ + E + I + + + IF + + + A A +S N +LS +
Sbjct: 153 ERHCRLTSWIVSQIGPEIEEKIRNSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLI 212
Query: 1060 SMLG-CSEIGQAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESL 1118
S LG + + QL + +T I+K+I K+ L SG P +G + +
Sbjct: 213 SYLGSNDPRIRDLAELQLQKW--STGGCSIDKNISKIYKLLSGSPF-EGLFSLKELESEF 269
Query: 1119 DWK 1121
W
Sbjct: 270 SWL 272
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 93.8 bits (232), Expect = 2e-19
Identities = 90/600 (15%), Positives = 167/600 (27%), Gaps = 243/600 (40%)
Query: 377 TSSSSKLDELILPAFQK-NRINNKNVTVNSNASYNKIKIKPVGSTSASTKSLFDGLSSDT 435
+ E +L QK + N T S+ S N IK+ + S A + L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKL-RIHSIQAELRRLLK------ 239
Query: 436 DDSEKYFNMIKSAPKRLIIL-----PKKTKPM-----TLKVNNVTTAETDVT-VVSNNSS 484
S+ Y L++L K L +TT VT +S ++
Sbjct: 240 --SKPY-------ENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFKQVTDFLSAATT 286
Query: 485 TPVSSSTQLQTPVSSKLTLNVAELKENISP--SVKVSDLK--VIK-SPLNTS-IGSETSE 538
T +S +TL E+K + + DL V+ +P S I +
Sbjct: 287 THISL-------DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 539 G-DTFDFKLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELN 597
G T+D K + I+ S LN
Sbjct: 340 GLATWDN---------------WKHVNCDK-------------------LTTIIESS-LN 364
Query: 598 NVDLDSIVEFR--FKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQK 655
++ E+R F + ++P A+ P + L +W + DV
Sbjct: 365 VLEPA---EYRKMFDRLSVFPPSAHIPTI----------LLSLIWFDVIKS-----DVMV 406
Query: 656 IKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESDEEGESEPKKPKMF 715
+ V KY L+E PK+ +
Sbjct: 407 V---------------------------------VNKLHKYSLVEKQ------PKESTIS 427
Query: 716 VSTPIQPPPAPHVETQTLIKEKISPSPKQKLRNEILVK-EMNRNYVSSDISKNILNIDET 774
+ P + ++ K+ + L I+ + + + S D+ +D
Sbjct: 428 I---------PSI----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP--YLD-- 470
Query: 775 MDYIESSTEALARHM-GTDPYKVQLMKQCFEDTFDNYGFPMSVSREFYIENKAHYSGGSL 833
Y S + H+ + + + F F ++ F +E K + +
Sbjct: 471 -QYFYSH---IGHHLKNIEHPERMTL---FRMVFLDFRF---------LEQKIRHDSTAW 514
Query: 834 FKTGNFIQPTVDLSPSARTLSPTSELELEDEDDDHSTVASGVLVLDNKPNKLEVVPVKFY 893
+G ++ L+ +KFY
Sbjct: 515 NASG----SILNT--------------LQQ--------------------------LKFY 530
Query: 894 QCRLSQKDSNITNDSNKNNFLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPDDYSDV 953
+ I ++ +Y + ++ FL +NL+ Y+D+
Sbjct: 531 K-------PYICDNDP-------KYERLVN--------AILD-FLPKIEENLICSKYTDL 567
Score = 86.8 bits (214), Expect = 3e-17
Identities = 100/652 (15%), Positives = 200/652 (30%), Gaps = 227/652 (34%)
Query: 592 DISELNNVDLDSIVE-FRFKEVVLYPDDANKPPVGTA-----LNRPAKV--TLLKVWPKD 643
DI + D+ V+ F K+V D K + + V TL W
Sbjct: 20 DILSVF---EDAFVDNFDCKDV----QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 644 KSTGELIKD-VQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLESD 702
E+++ V+++ +NY+ ++ + + E QP + + Q Y
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLM----SPIKTE--QRQPSMMTRMYIEQRDRLYN----- 121
Query: 703 EEGESEPKKPKMFVSTPIQPPPAPHVETQTLIKEKISPSP-----------KQKL----- 746
K V P+++ + + E + P+ K +
Sbjct: 122 ----DNQVFAKYNV-----SRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 747 RNEILVKEMNRN--YVS---SDISKNILNIDETMDY-IESSTEALARHMGTDPYKVQLMK 800
+ + +M+ +++ + + +L + + + Y I+ + + + H ++ ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 801 QCFEDTFDNYGFPMS--VSREFYIENKAH---YSGGS--LFKTGNFIQPTVDLSPSART- 852
+ + V ++N ++ L T Q T LS + T
Sbjct: 232 AELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRF-KQVTDFLSAATTTH 288
Query: 853 --LSPTSELELEDEDDDHSTVASGVL--VLDNKPNKL--EVV---PVKFYQCRLSQKDSN 903
L S DE +L LD +P L EV+ P + S +D
Sbjct: 289 ISLDHHSMTLTPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 904 ITNDSNKNNFLNVEYAKKLDRKFSITWLKYKRSFLMTCNDNLMPDDYSDVSNLFEMIHEH 963
T D N+ +V KL S L + L P +Y +F+ +
Sbjct: 342 ATWD----NWKHVNC-DKLTTIIE--------SSL----NVLEPAEYRK---MFDRL--- 378
Query: 964 FNLASVSSNDSY-DAQVWKLCVALWGTLDAKNNSHDINMKRKDNLTEWLESVMEE-NPKS 1021
SV ++ + L + +W ++ + D + V+ + + S
Sbjct: 379 ----SVFPPSAHIPTIL--LSL-IWF-----------DVIKSD-----VMVVVNKLHKYS 415
Query: 1022 IASKDPEQNIF-----QLVTQHK------LHEAIV--------------SAQQSDN-FYL 1055
+ K P+++ L + K LH +IV D FY
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY- 474
Query: 1056 SGALSMLG--CSEIGQA--------------FMQAQLSH--------------------- 1078
S +G I F++ ++ H
Sbjct: 475 ----SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 1079 -------------YVNATSDSFINK-----------DILKLMLLTSGQPLYD 1106
VNA D F+ K D+L++ L+ + +++
Sbjct: 531 KPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 52.2 bits (124), Expect = 1e-06
Identities = 75/464 (16%), Positives = 134/464 (28%), Gaps = 177/464 (38%)
Query: 727 HVETQTLIKEKISPSPKQKLRNEIL-------VKEMNRNYVSSDISKNILNIDETMDYIE 779
H++ +T Q +IL V + V D+ K+IL+ +E I
Sbjct: 6 HMDFET--------GEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIM 56
Query: 780 SST--EALARHMGT-DPYKVQLMKQCFEDTFD-NYGFPM----------SVSREFYIENK 825
S R T + +++++ E+ NY F M S+ YIE +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 826 AH-YSGGSLFKTGNF--IQPTVDLSPSARTLSPTSELELEDEDDDHSTVASG--VLVLDN 880
Y+ +F N +QP + L + L P + + + SG + L
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI------DGVLGSGKTWVAL-- 168
Query: 881 KPNKLEVVPVKFYQCRLSQKDSNITNDSNKNNFLNVEYAKKLDRKFS--ITWLKYKRSFL 938
+V C + K+ K I WL K
Sbjct: 169 -----DV-------CL----------------------SYKVQCKMDFKIFWLNLKN--- 191
Query: 939 MTCNDNLMPDDYSDVSNLFEMIHEHFNLASVSSNDSYDAQVWKLCVALWGTLDAKNNSHD 998
CN P+ + EM + KL + + + H
Sbjct: 192 --CNS---PET------VLEM-------------------LQKLLYQIDPNWTS-RSDHS 220
Query: 999 INMK-RKDNLTEWLESVMEENPKSIA------SKDPEQ-NIFQ-----LVT--------- 1036
N+K R ++ L +++ P ++ + N F L+T
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 1037 ---QHKLHEAIVSAQQSDNFYLSGALSM----LGCSE-----------------IGQAFM 1072
H ++ S S+ L C I
Sbjct: 281 LSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA---- 334
Query: 1073 QAQLSHYVNATSDSF--INKD----ILKLML--LTSG--QPLYD 1106
+ + T D++ +N D I++ L L + ++D
Sbjct: 335 -ESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Score = 48.7 bits (115), Expect = 1e-05
Identities = 33/242 (13%), Positives = 85/242 (35%), Gaps = 62/242 (25%)
Query: 922 LDRKFSITWLKYK-RSFLMTCNDNLMPD-DYSDVSNLFEMIHEHFNLASVSSNDSYD--- 976
+D F +Y+ + L D + + D DV ++ S+ S + D
Sbjct: 7 MD--FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM---------PKSILSKEEIDHII 55
Query: 977 ------AQVWKLCVALWGTLDAKNNSHDINMKRKDNLT-EWLESVMEENPKS-------- 1021
+ +L W L + ++ + ++L S ++ +
Sbjct: 56 MSKDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 1022 IASKDPEQNIFQLVTQH---------KLHEAIVSAQQSDNFYLSGALSMLGC------SE 1066
I +D N Q+ ++ KL +A++ + + N + G +LG +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---VLGSGKTWVALD 169
Query: 1067 IGQAF-MQAQLS---HYVNA----TSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESL 1118
+ ++ +Q ++ ++N + ++ + ++L+ +L S+ N+ +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 1119 DW 1120
Sbjct: 228 HS 229
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle, endoplasmic
reticulum, ER-golgi transport, membrane, mRNA transport;
4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 80.4 bits (198), Expect = 2e-15
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 13/168 (7%)
Query: 964 FNLASVSSNDSYDAQVWKLCVALWGTLDAKNNS-------HDINMKRKDNLTEWLESVME 1016
+ S D +WKL L+ + + + +R LT W+ S +
Sbjct: 417 KDALDYMEKTSSDYNLWKLSSILFDPVSYPYKTDNDQVKMALLKKERHCRLTSWIVSQIG 476
Query: 1017 ENP--KSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYLSGALSMLGC-SEIGQAFMQ 1073
K S + + IF + + + A A +S N +LS +S LG + +
Sbjct: 477 PEIEEKIRNSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAE 536
Query: 1074 AQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESLDWK 1121
QL + +T I+K+I K+ L SG P +G + + W
Sbjct: 537 LQLQKW--STGGCSIDKNISKIYKLLSGSPF-EGLFSLKELESEFSWL 581
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 53.0 bits (126), Expect = 4e-07
Identities = 41/314 (13%), Positives = 83/314 (26%), Gaps = 13/314 (4%)
Query: 33 VGTLQGSKEFLVSATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQ 92
+ G++ +T G+ + ++ + +S G+T G
Sbjct: 242 LERPGGNEITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGST------GNRNPGSSG 295
Query: 93 PTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFA 152
T G +TG + S S T S G P + + + + +
Sbjct: 296 TGGTATWKPGSSGPGSTGSWNSGS--SGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGH 353
Query: 153 TNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNT 212
+ + + S GSF + S N + G +G +T
Sbjct: 354 WTSESSVSGSTGQWHSESGSFRPDSPGSGNAR--PNNPDWGTFEEVSGNVSPGTRREYHT 411
Query: 213 SLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTS 272
G++T+ ++T T T+ + S
Sbjct: 412 EKLVTSKGDKELRT-GKEKVTSGSTTTTRRSCSKTVTKTVIGPDGHKEVTKEVVTSEDGS 470
Query: 273 LANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANT--FGQGLNSSFNLGG 330
A G + F ++ G + G+ ++ + + G
Sbjct: 471 DCPEAMDLGTLSGIGTLDGFRHRHPDEAAFFDTASTGKTFPGFFSPMLGEFVSETESRGS 530
Query: 331 TSNTFNNPLAPQAP 344
S F N +
Sbjct: 531 ESGIFTNTKESSSH 544
Score = 49.5 bits (117), Expect = 5e-06
Identities = 34/284 (11%), Positives = 68/284 (23%), Gaps = 20/284 (7%)
Query: 57 PSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVS 116
P F + P Q +P T +
Sbjct: 215 PGNFKSQLQKVPPEWKALTDM------PQMRMELERPGGNEITRGGSTSYGTGSETESPR 268
Query: 117 TQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTN 176
S+ S+N + G +T P + T+ ++ +T +SG GS G
Sbjct: 269 NPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQ 328
Query: 177 QNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGT 236
S T ++ G + ++ + GQ + + P + S
Sbjct: 329 NPGSPRPG---STGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSPGSGNAR 385
Query: 237 STSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSG--TLFGNTAKPAGLFG 294
+ +F + + T +T + G +G
Sbjct: 386 PNNPDW---------GTFEEVSGNVSPGTRREYHTEKLVTSKGDKELRTGKEKVTSGSTT 436
Query: 295 NSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNP 338
+ + T G+ + + S
Sbjct: 437 TTRRSCSKTVTKTVIGPDGHKEVTKEVVTSEDGSDCPEAMDLGT 480
Score = 35.2 bits (80), Expect = 0.14
Identities = 24/200 (12%), Positives = 53/200 (26%), Gaps = 21/200 (10%)
Query: 153 TNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNT 212
T+ Q P + G+ + + ++ + GS S G G+ N
Sbjct: 233 TDMPQMRMELERPGGNEITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRN-- 290
Query: 213 SLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTS 272
P ++ + + G+ ++ +NS + T +
Sbjct: 291 --------------PGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGST--GNQNPGSPR 334
Query: 273 LANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTS 332
+ S+ +G + S +G+ G ++
Sbjct: 335 PGSTGTWNPGSSERGSAGHWTSESSVSGS---TGQWHSESGSFRPDSPGSGNARPNNPDW 391
Query: 333 NTFNNPLAPQAPPASNSVNT 352
TF +P +T
Sbjct: 392 GTFEEVSGNVSPGTRREYHT 411
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 2e-05
Identities = 120/641 (18%), Positives = 197/641 (30%), Gaps = 232/641 (36%)
Query: 223 TFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTL 282
+PT + F A S L FNK P P A +
Sbjct: 19 VLLVPTASF--------FIA-----SQLQEQFNKILP--------EPTEGFAADD----- 52
Query: 283 FGNTAKPAGLFGNSTNTGGLF-GNSTFGSNTGNANTFGQGLNSSFN------LGGTS-NT 334
PA L G F G + F Q LN L G +
Sbjct: 53 --EPTTPAELVGK-------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 335 FNNPLAPQAPPASNSVNTQQILNLASLPYFSAPTLYKGVLPATSSSSKLDELILPAFQKN 394
L + + V T++++ Y +A + K S+S+ + A +
Sbjct: 104 LAAKLLQEND--TTLVKTKELI----KNYITARIMAKRPFDKKSNSA-----LFRAVGEG 152
Query: 395 RINNKNVTV-----NSN----------ASYNKIKIKPVGSTSASTKSLFDGLSSDTDDSE 439
N + V + N++ +Y+ + + + SA T L T D+E
Sbjct: 153 --NAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-VGDLIKFSAET---LSELIRTTLDAE 206
Query: 440 KYFNMIKSAPKRLIILPKKTKPMTLKVNNVTTAETDVTVVSNNSSTPVS----SSTQL-Q 494
K F + L IL P T + D S P+S QL
Sbjct: 207 KVF------TQGLNILEWLENP-------SNTPDKDYL-----LSIPISCPLIGVIQLAH 248
Query: 495 TPVSSKLT-LNVAELKENIS-PSVKVSDL---KVIKSPLNTSIGSETSEGDTFDFKLTRK 549
V++KL EL+ + + L I +ET ++F F RK
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI---------AETDSWESF-FVSVRK 298
Query: 550 GYFVSPTLNELKQLKTKNGPCIVEGFTIG---HEEFGSICFLESIDISELNNVD------ 600
+ L F IG +E + + SI L N +
Sbjct: 299 A---------ITVL-----------FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 601 LDSIVEFRFKEVVLYPDDANK--PP---VGTAL-NRPAKVTLLKVWPKDKSTGE------ 648
L SI ++V Y + N P V +L N + + +G
Sbjct: 339 L-SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV---------SGPPQSLYG 388
Query: 649 LIKDVQKIKNMNYEAIVIRACTRMNVEFVSYQPETGSWCFKVQH---FSKYGLLESDEEG 705
L ++K K A + ++ Q FS+
Sbjct: 389 LNLTLRKAK----------APSGLD-----------------QSRIPFSE---------- 411
Query: 706 ESEPKKPKMFVST--PIQPP-------PAPHVETQTLIKEKISPSPKQKLRNEILV---- 752
+K K F + P+ P PA + + L+K +S + K ++ I V
Sbjct: 412 ----RKLK-FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-IQ--IPVYDTF 463
Query: 753 --KEMNRNYVSSDISKNILN--IDETMDYIESSTEALARHM 789
++ R S IS+ I++ I + + E++T+ A H+
Sbjct: 464 DGSDL-RVL-SGSISERIVDCIIRLPVKW-ETTTQFKATHI 501
Score = 37.0 bits (85), Expect = 0.048
Identities = 70/350 (20%), Positives = 106/350 (30%), Gaps = 126/350 (36%)
Query: 817 SREFYIENKAHYSGGSLFKTGNFIQPTVDLSPSARTL---------SPTSELELEDEDDD 867
+R + +H GSL + PT A L PT +DE
Sbjct: 6 TRPLTL---SH---GSLEHV--LLVPT-ASFFIASQLQEQFNKILPEPTEGFAADDEP-- 54
Query: 868 HSTVASGVLV----------LDNKPNK-----LEVVPVKFYQCRLSQKDSNITNDSNKNN 912
+T A LV ++ L + +F C L D I +
Sbjct: 55 -TTPAE--LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--I------HA 103
Query: 913 FLNVEYAKKLDRKFSITWLKYK---RSFLMTCNDNLMPDDYSDVSNLFEMIHE-HFNLAS 968
A KL ++ T +K K ++++ P D S LF + E + L +
Sbjct: 104 L-----AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 969 V-----SSND----------SYDAQVWKLCVALWGTLD--AKNNSHDINMKRKD-NLTEW 1010
+ +++D +Y V L TL + + + N+ EW
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 1011 LESVMEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQSDNFYL-SGALSM-LGCSEIG 1068
LE NP + KD YL S +S L IG
Sbjct: 219 LE-----NPSNTPDKD---------------------------YLLSIPISCPL----IG 242
Query: 1069 QAFMQAQLSHYVNATSDSFINKDILKLMLLTSGQPLYDGSNGIINVCESL 1118
QL+HYV KL+ T G+ L G + L
Sbjct: 243 VI----QLAHYVVT----------AKLLGFTPGE-LRSYLKGATGHSQGL 277
>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen,
jelly- roll topology, structural protein; 1.36A
{Bacillus anthracis}
Length = 220
Score = 39.6 bits (92), Expect = 0.003
Identities = 30/188 (15%), Positives = 43/188 (22%), Gaps = 11/188 (5%)
Query: 46 ATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFG 105
TG T P T T+ T G T G + T PT G
Sbjct: 30 PTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTG--PTGPSGLGLPAGL 87
Query: 106 KPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAP 165
G ++ N P F + T + T + T
Sbjct: 88 YAFNSGGISLDLGIND----PVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTA 143
Query: 166 QTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFG-FGTNTATNNTSLFGQKPATNTF 224
S G +N T + S + T T + +
Sbjct: 144 TASVLGGLT----IQVNGVPVPGTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLS 199
Query: 225 GLPTNTAS 232
+AS
Sbjct: 200 LALGTSAS 207
Score = 37.3 bits (86), Expect = 0.016
Identities = 21/156 (13%), Positives = 37/156 (23%), Gaps = 14/156 (8%)
Query: 45 SATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLF 104
TG+ T P + + + L F + FGT S
Sbjct: 62 GPTGATGLTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQL 121
Query: 105 GKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGA 164
+T + T N T I+ G P T + + +
Sbjct: 122 D-ADTFVISETGFYKITVIANTATASVLGGLTIQVNGVPVPGTGSSLISLGAPIV----- 175
Query: 165 PQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTG 200
T + + + G + + G
Sbjct: 176 ------IQAITQITTTPSLVEV--IVTGLGLSLALG 203
Score = 35.0 bits (80), Expect = 0.096
Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 8/143 (5%)
Query: 194 GSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNS 253
G T +TG G T T G T G PT + + + S
Sbjct: 44 GDTGTTG-PTGPTGPTGPTGPTGATGLTGPTG-PTGPSGLGLPAGLYAFNSGGISLDLG- 100
Query: 254 FNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAK--PAGLFGNSTNTGGLFGNSTFGSN 311
FNT + + + + T + + N+ L G + +
Sbjct: 101 ---INDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATASVLGGLTIQVNG 157
Query: 312 TGNANTFGQGLNSSFNLGGTSNT 334
T ++ + + T
Sbjct: 158 VPVPGTGSSLISLGAPIVIQAIT 180
Score = 32.3 bits (73), Expect = 0.62
Identities = 14/115 (12%), Positives = 23/115 (20%), Gaps = 3/115 (2%)
Query: 188 PTFNLGGSTTSTGFG--FGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPA 245
F T + T++ T +T+ +
Sbjct: 90 FNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATASVLG 149
Query: 246 QTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTG 300
+ N P G + P A + T G S G
Sbjct: 150 GLTIQVNGVPVPGTGSSLISLGAPIVIQAITQITTTPSLVEV-IVTGLGLSLALG 203
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta
helix, hydrolase, M protease, secreted, transmembrane,
virulence; 1.75A {Haemophilus influenzae}
Length = 989
Score = 38.6 bits (88), Expect = 0.014
Identities = 45/272 (16%), Positives = 72/272 (26%), Gaps = 7/272 (2%)
Query: 53 TTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFG 112
T S T + E LF T ++
Sbjct: 651 TFKGKSEQNRFLLTGGTNLNGDLKVEKGTLFLSGRPTPHARDIAGISSTKKDQHFAENNE 710
Query: 113 AAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGS 172
V +F T N + A TSN+ A++ ++ + A T S
Sbjct: 711 VVVEDDWINRNFKATNINVTNNATLYSGRNVANITSNITASDNAKVHIGYKAGDTVCVRS 770
Query: 173 FGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTAT---NNTSLFGQKPATNTFGLPTN 229
T + N +T +G + A +LFG T +
Sbjct: 771 DYTGYVTCTTDKLSDKALNSFNATNVSGNVNLSGNANFVLGKANLFGTISGTGNSQVRLT 830
Query: 230 TASPF---GTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGT-LFGN 285
S + G S + N+ N +NT T + S + + T L
Sbjct: 831 ENSHWHLTGDSNVNQLNLDKGHIHLNAQNDANKVTTYNTLTVNSLSGNGSFYYLTDLSNK 890
Query: 286 TAKPAGLFGNSTNTGGLFGNSTFGSNTGNANT 317
+ ++T L G T N T
Sbjct: 891 QGDKVVVTKSATGNFTLQVADKTGEPTKNELT 922
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis,
transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Length = 64
Score = 34.2 bits (77), Expect = 0.021
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 694 SKYGLLESDEEGESEPKK--PKMFVSTPIQPPPAPHVETQTLIKEKISPSPK 743
SKYGL +SDEE E P K K + P+ PP + Q + K +P P+
Sbjct: 1 SKYGLQDSDEEEEEHPSKTSTKKLKTAPL-PPASQTTPLQMALNGKPAPPPQ 51
>1dab_A P.69 pertactin; pertussis beta helix, cell adhesion; 2.50A
{Bordetella pertussis} SCOP: b.80.1.7 PDB: 2iou_G
Length = 539
Score = 36.6 bits (83), Expect = 0.052
Identities = 29/257 (11%), Positives = 53/257 (20%), Gaps = 3/257 (1%)
Query: 60 FGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQS 119
+ Q A + + G FG G
Sbjct: 205 RAAGVAAMQGAVVHLQRATIRRGDALAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGV 264
Query: 120 NTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQ 179
+ + + + + S + +T G F
Sbjct: 265 DVSGSSVELAQSIVEAPELGAAIRVGRGARVTVPGGSLSAPHGNVIETGGARRFAPQAAP 324
Query: 180 SLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTS 239
Q T T G AT +P + P + +
Sbjct: 325 LSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALA 384
Query: 240 FGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNT 299
A+ + +S + + N+ + G++ AG F
Sbjct: 385 SQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLAS--DGSVDFQQPAEAGRF-KVLTV 441
Query: 300 GGLFGNSTFGSNTGNAN 316
L G+ F N
Sbjct: 442 NTLAGSGLFRMNVFADL 458
Score = 32.4 bits (72), Expect = 0.99
Identities = 31/283 (10%), Positives = 58/283 (20%), Gaps = 7/283 (2%)
Query: 52 GTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGF 111
T P+ + A+ L + + Q ++
Sbjct: 173 NVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDALAG 232
Query: 112 GAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFG 171
GA + + + S++ + GA G G
Sbjct: 233 GAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRG 292
Query: 172 SFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTA 231
+ T SL+ T F A + +L A L
Sbjct: 293 ARVTVPGGSLSAPHG------NVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLP 346
Query: 232 SPFGTSTSFGAQPAQTSTLFNSFNKP-TPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPA 290
P + + GA + P T + +
Sbjct: 347 EPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATW 406
Query: 291 GLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSN 333
+ NS + A + + L G+
Sbjct: 407 VMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGL 449
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.062
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 12/51 (23%)
Query: 1005 DNLTEWLESVMEENPKSIASKDPEQNIFQLVTQHKLHEAIVSAQQS-DNFY 1054
+++ +W EE K + D + E A++ + +
Sbjct: 85 ESIRKW----REEQRKRLQELDAAS-------KVMEQEWREKAKKDLEEWN 124
>2odl_A Adhesin; HMW1, secretion domain, beta helix, cell adhesion; 1.92A
{Haemophilus influenzae}
Length = 373
Score = 35.8 bits (81), Expect = 0.073
Identities = 28/237 (11%), Positives = 65/237 (27%), Gaps = 7/237 (2%)
Query: 170 FGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTN 229
+ F +QN+ + F Q + TS +N +F P T G
Sbjct: 34 WKQFNIDQNEMVQFLQENNNSAVFNRVTSNQISQLKGILDSNGQVFLINPNGITIG---- 89
Query: 230 TASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKP 289
+ G + + F+ + + + + G+
Sbjct: 90 ---KDAIINTNGFTASTLDISNENIKARNFTFEQTKDKALAEIVNHGLITVGKDGSVNLI 146
Query: 290 AGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNS 349
G N G+ + + + ++++ N N A + +
Sbjct: 147 GGKVKNEGVISVNGGSISLLAGQKITISDIINPTITYSIAAPENEAVNLGDIFAKGGNIN 206
Query: 350 VNTQQILNLASLPYFSAPTLYKGVLPATSSSSKLDELILPAFQKNRINNKNVTVNSN 406
V I N L S G + ++ + + + + Q + + + +
Sbjct: 207 VRAATIRNQGKLSADSVSKDKSGNIVLSAKEGEAEIGGVISAQNQQAKGGKLMITGD 263
Score = 30.8 bits (68), Expect = 2.9
Identities = 26/256 (10%), Positives = 56/256 (21%), Gaps = 3/256 (1%)
Query: 87 TTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTT--FGQPNTTAIKPFGAAA 144
F Q N N + + + + F NP G+ F A+
Sbjct: 44 MVQFLQENNNSAVFNRVTSNQISQLKGILDSNGQVFLINPNGITIGKDAIINTNGFTAST 103
Query: 145 PQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFG 204
SN + + + G S G
Sbjct: 104 LDISNENIKARNFTFEQTKDKALAEIVNHGLITVGKDGSVNLIGGKVKNEGVISVNGGSI 163
Query: 205 TNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFN 264
+ A ++ T T+ + A+ + + +
Sbjct: 164 SLLAGQKITISDIINPTITYSIAAPENEAV-NLGDIFAKGGNINVRAATIRNQGKLSADS 222
Query: 265 TNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNS 324
+ + ++ +A G A + G+ + G+
Sbjct: 223 VSKDKSGNIVLSAKEGEAEIGGVISAQNQQAKGGKLMITGDKVTLKTGAVIDLSGKEGGE 282
Query: 325 SFNLGGTSNTFNNPLA 340
++ G N +
Sbjct: 283 TYLGGDERGEGKNGIQ 298
>1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous
protein, LIPO-polysaccharide binding, bacteriophage
structural protein; HET: CIT; 1.5A {Bacteriophage T4}
SCOP: d.231.1.1
Length = 198
Score = 33.2 bits (75), Expect = 0.27
Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 6/160 (3%)
Query: 72 SLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQ 131
A++ + T +G ++ G + + G G G + + N
Sbjct: 36 GTVSASDCPLYASRIGTRYGGSSSNPGLPD-MRGLFVRGSGRGSHLTNPNVNGNDQFGKP 94
Query: 132 PNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFN 191
Q + A G + G+FG + + + ++
Sbjct: 95 RLGVGCTGGYVGEVQKQQMSYH-----KHAGGFGEYDDSGAFGNTRRSNFVGTRKGLDWD 149
Query: 192 LGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTA 231
T+ G+ + N+ + P N +
Sbjct: 150 NRSYFTNDGYEIDPASQRNSRYTLNRPELIGNETRPWNIS 189
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane
protein, membrane protein; HET: BOG; 1.45A {Delftia
acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Length = 332
Score = 33.9 bits (78), Expect = 0.31
Identities = 25/188 (13%), Positives = 41/188 (21%), Gaps = 45/188 (23%)
Query: 192 LGGSTTSTGF----GFGTNTATNNTSLFGQKPATNTF-GLPTNTASPFGTSTSFGAQ--P 244
LGG GF + + F + + L + FG G P
Sbjct: 47 LGGGL-KAGFWLEGEIFGDDGNASGFNFKR----RSTVSL----SGNFGEVR-LGRDLVP 96
Query: 245 AQTSTL-FNSFNKPTPGFQFNTNTTP-------NTSLANNA---FSGTLFGNTAKPAGLF 293
++ F+ G N ANN ++ G A
Sbjct: 97 TSQKLTSYDLFSATGIGPFMGFRNWAAGQGADDNGIRANNLISYYTPNFGGFNA------ 150
Query: 294 GNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLA--PQAPPASNSVN 351
G + F G + + + L Q
Sbjct: 151 ------GFGYA---FDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLAT 201
Query: 352 TQQILNLA 359
+ + L
Sbjct: 202 DRDEITLG 209
>3syj_A Adhesion and penetration protein autotransporter; bacterial
aggregation and biofilm formation, SELF-associatin
autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Length = 1011
Score = 33.6 bits (75), Expect = 0.46
Identities = 28/279 (10%), Positives = 51/279 (18%), Gaps = 15/279 (5%)
Query: 64 TSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNT-- 121
T+ S + P + + N + + G + Q
Sbjct: 132 DMTSNMNGSTYSDRTKYPERVRIGSGRQFWRNDQDKGDQVAGAYHYLTAGNTHNQRGAGN 191
Query: 122 --FSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQ 179
+ G+ S +F + + G G
Sbjct: 192 GYSYLGGDVRKAGEYGPLPIAGSKGDSGSPMFIYDAEKQKWLINGILREGNPFEGKENGF 251
Query: 180 SLNFNQ---------NKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNT 230
L + N + T G +
Sbjct: 252 QLVRKSYFDEIFERDLHTSLYTRAGNGVYTISGNDNGQGSITQKSGIPSEIKITLANMSL 311
Query: 231 ASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPA 290
N T F + + N +G L+
Sbjct: 312 PLKEKDKVHNPRYDGPNIYSPRLNNGETLYFMDQKQGSLIFASDINQGAGGLYFEGNFTV 371
Query: 291 GLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLG 329
N T G G ++T G + +G
Sbjct: 372 SPNSNQTWQGA--GIHVSENSTVTWKVNGVEHDRLSKIG 408
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 33.5 bits (76), Expect = 0.58
Identities = 48/297 (16%), Positives = 91/297 (30%), Gaps = 36/297 (12%)
Query: 89 TFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPF-GAAAPQT 147
+ T S G GA + + + G P+ A P +
Sbjct: 1458 NYSLGTAVPTLAGSGMGTSQLPEGAG-TPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGR 1516
Query: 148 SNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNT 207
A + + Q+ G+ S S S G+G + +
Sbjct: 1517 EGFGDYGLLGAASPYKGVQSPGYTSPF-------------------SSAMSPGYGLTSPS 1557
Query: 208 ATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFN-SFNKPTPGFQFNTN 266
+ ++ + PA + SP + TS P TS ++ + + +
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSATSPSYSP 1615
Query: 267 TTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNAN--TFGQGLNS 324
T+P+ S + ++S T + P + T S S T + T +
Sbjct: 1616 TSPSYSPTSPSYSPT--SPSYSPTSPSYSPT--------SPSYSPTSPSYSPTSPSYSPT 1665
Query: 325 SFNLGGTSNTFNNPLAPQAPPASNSVNTQQILNLASLPYFSAPTLYKGVLPATSSSS 381
S + TS +++ +P + + T + S Y Y P+ S +S
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1722
>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta
helix, heme uptake, spate, hydrolase; 2.20A {Escherichia
coli} PDB: 3ak5_A
Length = 1048
Score = 33.1 bits (74), Expect = 0.67
Identities = 29/294 (9%), Positives = 70/294 (23%), Gaps = 5/294 (1%)
Query: 61 GTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSN 120
+ AT++ + T + + G + +
Sbjct: 692 DGQGTAFTLEEGTSVATKDADKSVFNGTVNLDNQSVLNINDIFNGGIQANNSTVNISSDS 751
Query: 121 TFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQS 180
N T A+ + N S AT + + + + +
Sbjct: 752 AVLGNSTLTSTALNLNKGANALASQSFVSDGPVNISDATLSLNSRPDEVSHTLLPVYDYA 811
Query: 181 LNFN--QNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTST 238
++N + N+G + +G + T G+ T + G
Sbjct: 812 GSWNLKGDDARLNVGPYSMLSGNINVQDKGTVTLGGEGELSPDLTLQNQMLYSLFNGYRN 871
Query: 239 SFGAQ---PAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGN 295
+ P T ++ ++ T + N + T +
Sbjct: 872 IWSGSLNAPDATVSMTDTQWSMNGNSTAGNMKLNRTIVGFNGGTSPFTTLTTDNLDAVQS 931
Query: 296 STNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNS 349
+ + +A + +F ++ + AP A+
Sbjct: 932 AFVMRTDLNKADKLVINKSATGHDNSIWVNFLKKPSNKDTLDIPLVSAPEATAD 985
>3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human
adenovirus 5}
Length = 581
Score = 32.7 bits (73), Expect = 0.76
Identities = 37/297 (12%), Positives = 70/297 (23%), Gaps = 13/297 (4%)
Query: 26 PLILQKYVGTLQGSKEFLVSATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQ 85
PL + + TL + V+ + T ++ + Q + +++
Sbjct: 210 PLHVTDDLNTLTVATGPGVTINNTSLQTKVTGALGFDSQGNMQLNVAGGLRIDSQNRRLI 269
Query: 86 STTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAP 145
++ G + N + T + A
Sbjct: 270 LDVSYPFDAQNQLNLRLGQGPLFINSAHNLDINYNKGLYLFTASNNSKKLEVNLSTAKGL 329
Query: 146 QTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGS----TTSTGF 201
+ FG+ T L F+ NK G+ ++
Sbjct: 330 MFDATAIAINAGDGLEFGSLNAPNSNPLKTKIGHGLEFDSNKAMVPKLGTGLSFDSTGAI 389
Query: 202 GFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGF 261
G T P+ N A T G+Q T ++
Sbjct: 390 TVGNKNNDKLTLWTTPAPSPNCRLNAEKDAKLTLVLTKCGSQILATVSVLAVKGS----- 444
Query: 262 QFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTF 318
+ A+ G + L + G+ T G+ NA F
Sbjct: 445 --LAPISGTVQSAHLIIRFDENGVLLNNSFL--DPEYWNFRNGDLTEGTAYTNAVGF 497
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia
chrysanthemi} SCOP: b.80.1.9
Length = 400
Score = 32.5 bits (73), Expect = 0.76
Identities = 27/177 (15%), Positives = 49/177 (27%), Gaps = 23/177 (12%)
Query: 204 GTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNS--FNKPTPGF 261
N+ + F + F G Q + S F + GF
Sbjct: 218 QKVVIENSWA-FRNGINYWNDSAFAGNGNGFKLG---GNQAVGNHRITRSVAFGNVSKGF 273
Query: 262 QFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQG 321
N N T + NT+ + N N G + + N
Sbjct: 274 DQNNNAGGVT----------VINNTS-----YKNGINYGFGSNVQSGQKHYFRNNVSLSA 318
Query: 322 LNSSFNLGGTSNTFNNPLAPQAPPASNSVNTQQILNLASLPYFSAPTLYKGVLPATS 378
+ N SN+++ A A + + ++ + +L++ L A S
Sbjct: 319 SVTVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFR--LSANS 373
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Salmonella enterica
subsp}
Length = 425
Score = 32.6 bits (73), Expect = 0.77
Identities = 33/265 (12%), Positives = 64/265 (24%), Gaps = 3/265 (1%)
Query: 174 GTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASP 233
G N +++ + K G G T + S F + A
Sbjct: 108 GANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSF---KNVTGYDTYAAGADK 164
Query: 234 FGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLF 293
+ + GA + G + NT++ + + G A
Sbjct: 165 YRVDINSGAVVTDAVAPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAG 224
Query: 294 GNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASNSVNTQ 353
G + + T + T G A + T
Sbjct: 225 AIKGGKEGDTFDYKGVTFTIDTKTGDDGNGKVSTTINGEKVTLTVADIAIGAADVNAATL 284
Query: 354 QILNLASLPYFSAPTLYKGVLPATSSSSKLDELILPAFQKNRINNKNVTVNSNASYNKIK 413
Q + + S+ E +++I +NA+ +KI
Sbjct: 285 QSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANATGDKIT 344
Query: 414 IKPVGSTSASTKSLFDGLSSDTDDS 438
+ T S L ++ +
Sbjct: 345 LAGKTMFIDKTASGVSTLINEDAAA 369
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 32.5 bits (73), Expect = 0.95
Identities = 26/146 (17%), Positives = 39/146 (26%), Gaps = 6/146 (4%)
Query: 126 PTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQ 185
+GQ T +P PQ + Q G P S G Q + Q
Sbjct: 13 QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQ----MGMPPQGAVPSMGQQQFLTPAQEQ 68
Query: 186 NKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPA 245
+ +TTS N + + + Q G P + ++G A
Sbjct: 69 LHQ--QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126
Query: 246 QTSTLFNSFNKPTPGFQFNTNTTPNT 271
N+ P P T
Sbjct: 127 AMGQNMRPMNQLYPIDLLTELPPPIT 152
Score = 32.1 bits (72), Expect = 1.4
Identities = 26/190 (13%), Positives = 37/190 (19%), Gaps = 12/190 (6%)
Query: 83 FGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGA 142
+GQ+ T QP + + G Q S F P +
Sbjct: 16 YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPP-QGAVPSMGQQQFLTPAQEQLHQQID 74
Query: 143 AAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFG 202
A + N + Q GT Q Q G + + G
Sbjct: 75 QATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQ---QQPMAAPAYGQPSAAMGQN 131
Query: 203 FGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQ 262
L + P T N +
Sbjct: 132 MRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS--------NASPDYIR 183
Query: 263 FNTNTTPNTS 272
N P S
Sbjct: 184 STLNAVPKNS 193
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane,
cell out membrane, hydrolase, membrane, transmembrane;
HET: C8E; 2.50A {Pseudomonas aeruginosa}
Length = 632
Score = 32.4 bits (73), Expect = 0.97
Identities = 31/277 (11%), Positives = 56/277 (20%), Gaps = 46/277 (16%)
Query: 83 FGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTT-------FGQPNTT 135
FG S + G + T + F PT G
Sbjct: 21 FGDSLSDAG--QFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGNQLGIAPGD 78
Query: 136 AIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGS 195
Q N + S + G+ + +++ + + +
Sbjct: 79 LAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSRDGYLVDRA 138
Query: 196 TTSTGF--------GFGTNTATNNTSLFGQKPATNT--------------------FGLP 227
G G N L + + LP
Sbjct: 139 RQGLGADPNALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQALQQAGARYIVVWLLP 198
Query: 228 TNTASPFGTSTSFGAQPAQTSTLFNS-----FNKPTPGF-QFNTNTTPNTSLANNAFSGT 281
+P +Q S FN+ ++ N +AN A G
Sbjct: 199 DLGLTPATFGGPLQPFASQLSGTFNAELTAQLSQAGANVIPLNIPLLLKEGMANPASFG- 257
Query: 282 LFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTF 318
G + +T + +
Sbjct: 258 -LAADQNLIGTCFSGNGCTMNP-TYGINGSTPDPSKL 292
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT;
invasin, intimin, adhesion vaccination, bacterial
immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Length = 414
Score = 31.8 bits (71), Expect = 1.3
Identities = 41/289 (14%), Positives = 76/289 (26%), Gaps = 21/289 (7%)
Query: 54 TPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGA 113
T + + A ++ G T+N + + G L G+ A
Sbjct: 124 TGLNPDAPSLSGAAAAGSTASGWTDNGDGTWTAQISLGTTAGELDVMPKLNGQDAAANAA 183
Query: 114 AVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSF 173
V+ ++ S N + + T T A A G + S
Sbjct: 184 KVTVVADALSSNQSKVSVAEDHV----------KAGESTTVTLVAKDAHGNAISGLSLSA 233
Query: 174 GTNQNQSLNFNQNKPTFNLGGS-----TTSTGFGFGTNTATNNTSLFGQKPATNTFG--- 225
S + T GS TT G N + A T
Sbjct: 234 SLTGTASEGATVSSWTEKGDGSYVATLTTGGKTGELRVMPLFNGQPAATEAAQLTVIAGE 293
Query: 226 --LPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLF 283
+T + + T T+ +++ P G + + + + +
Sbjct: 294 MSSANSTLVADNKTPTVKTTTELTFTMKDAYGNPVTG-LKPDAPVFSGAASTGSERPSAG 352
Query: 284 GNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTS 332
T K G++ ++ G G + N Q L + +
Sbjct: 353 NWTEKGNGVYVSTLTLGSAAGQLSVMPRVNGQNAVAQPLVLNVAGDASK 401
>3p4g_A Antifreeze protein; right-handed Ca2+-binding beta-helix; 1.70A
{Marinomonas primoryensis}
Length = 323
Score = 31.7 bits (72), Expect = 1.4
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 260 GFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFG 319
GF T+T + + + + G+ F + N+ G ++T G+
Sbjct: 10 GFWDGTSTQAEITHSFDHYIGSAFDAS-------NNNVAVTGN-VSATLNVLAGDDKVSI 61
Query: 320 QGLNSSFNLGGTSNTFN 336
G + +
Sbjct: 62 DGNVEDVLVAANVAVLD 78
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein;
HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP:
b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Length = 492
Score = 31.9 bits (71), Expect = 1.4
Identities = 26/226 (11%), Positives = 52/226 (23%), Gaps = 7/226 (3%)
Query: 112 GAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFG 171
GAA S S T +F ++ + +T + G + G
Sbjct: 185 GAAFSVPSVTVNFTADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQG 244
Query: 172 SFGTNQNQSLNFNQN-KPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNT 230
T ++ + + + + G T T +T + +
Sbjct: 245 LSFTQNGVPVSISPITEQPDSYTATVVGNSVGDVTITPQVDTLILSTLQKKISLFPVPTL 304
Query: 231 ASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPA 290
+F T+F FQ + + S +
Sbjct: 305 TGILVNGQNFATDKGFPKTIFK-----NATFQLQMDNDVANNTQYEWSSSFTPNVSVNDQ 359
Query: 291 GLF-GNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTF 335
G + + + ++ N GG S
Sbjct: 360 GQVTITYQTYSEVAVTAKSKKFPSYSVSYRFYPNRWIYDGGRSLVS 405
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial
flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Length = 326
Score = 31.5 bits (71), Expect = 1.4
Identities = 21/150 (14%), Positives = 36/150 (24%), Gaps = 4/150 (2%)
Query: 189 TFN----LGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQP 244
+FN L GS F G N T + G + +T
Sbjct: 111 SFNGQKLLDGSFNGVQFQIGANAGETIGVSKIMNAQTASLGGSLTRTTSTIDATDLTKYD 170
Query: 245 AQTSTLFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFG 304
+ + N G +T + + T A +
Sbjct: 171 TAMAAGDLTINGVDVGKIDAASTAQERAAQLTEAINRVSSQTNVGASYDKTTGQVTLTSN 230
Query: 305 NSTFGSNTGNANTFGQGLNSSFNLGGTSNT 334
+ + N T N++ T+ T
Sbjct: 231 AAIAVAGAANDATVAGWANNATTGTATTTT 260
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A
{Homo sapiens}
Length = 159
Score = 29.6 bits (66), Expect = 3.5
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 729 ETQTLIKEKISPSPKQKLRNEILVKEMNR-------NYVSSDISKNILNIDETMDYIESS 781
E Q L++E+I P ++ L + + R NY+ S + L +ET Y S
Sbjct: 4 ELQMLLEEEI-PGGRRALFD--SYTNLERVADYCENNYIQSADKQRAL--EETKAYTTQS 58
Query: 782 TEALARHMGTDPYKVQLM 799
++A + T V M
Sbjct: 59 LASVAYLINTLANNVLQM 76
>1pdi_A Short tail fiber protein; structural protein; 12.00A
{Enterobacteria phage T4} SCOP: i.19.1.1
Length = 278
Score = 30.3 bits (67), Expect = 3.6
Identities = 18/146 (12%), Positives = 34/146 (23%), Gaps = 11/146 (7%)
Query: 72 SLFGATENKPLFGQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQ 131
A++ + T +G ++ G + + G G G + + N
Sbjct: 116 GTVSASDCPLYASRIGTRYGGSSSNPGLPD-MRGLFVRGSGRGSHLTNPNVNGNDQFGKP 174
Query: 132 PNTTAIKPFGAAAPQTSNLFATN------TSQATTAFGAPQTSGFGSFGTNQNQSLNFNQ 185
Q + AFG + S F + L+++
Sbjct: 175 RLGVGCTGGYVGEVQIQQMSYHKHAGGFGEHDDLGAFGNTRRSNF----VGTRKGLDWDN 230
Query: 186 NKPTFNLGGSTTSTGFGFGTNTATNN 211
N G T
Sbjct: 231 RSYFTNDGYEIDPESQRNSKYTLNRP 256
>3tew_A Protective antigen; protein transport, toxin; HET: MXE; 1.45A
{Bacillus anthracis} PDB: 3tex_A 3tey_A 3q8b_A 3q8a_A
1t6b_X 1acc_A 3q8e_A 3q8c_A 3tez_A 3mhz_A* 3q8f_A*
3kwv_A 3hvd_A 1tzo_A 1tzn_A 3etb_J 3ino_A
Length = 715
Score = 30.6 bits (68), Expect = 3.7
Identities = 34/231 (14%), Positives = 57/231 (24%), Gaps = 10/231 (4%)
Query: 112 GAAVSTQSNTFSFNPTTFGQPNTTAIKPFG----AAAPQTSNLFATNTSQATTAFGAPQT 167
+S+ ++ T P + K G +P+ +
Sbjct: 214 KGLTKYKSSPEKWS--TASDPYSDFEKVTGRIDKNVSPEARHPLVAAYPIVHVDMENIIL 271
Query: 168 SGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLP 227
S T S +K T T+ G ++T + SL T+
Sbjct: 272 SKNEDQSTQNTDSQTRTISKNTSTSRTHTSEPGSNSNSSTVAIDHSL--SLAGERTWAET 329
Query: 228 TNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLA-NNAFSGTLFGNT 286
+ + + T T PT N T T A N S L N
Sbjct: 330 MGLNTADTARLNANIRYVNTGTAPIYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNN 389
Query: 287 AKPA-GLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLNSSFNLGGTSNTFN 336
P+ L + N F ++ N + +
Sbjct: 390 YYPSKNLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDTDQVYGNIA 440
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG;
2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB:
1gnz_A*
Length = 257
Score = 30.2 bits (67), Expect = 3.8
Identities = 28/153 (18%), Positives = 45/153 (29%), Gaps = 17/153 (11%)
Query: 118 QSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQ 177
+S++ SF F +I G A L T+Q T ++G +
Sbjct: 1 ESDSVSFTFPNFWSDVEDSIIFQGDANTTAGTLQLCKTNQYGT--PLQWSAGRALY---- 54
Query: 178 NQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFGLPTNTASPFGTS 237
+ + NK T F F N PA S +
Sbjct: 55 SDPVQLWDNKTESVASFYTE---FTFFLKITGNG-------PADGLAFFLAPPDSDVKDA 104
Query: 238 TSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPN 270
+ +++ S N +F+T T PN
Sbjct: 105 GEYLGLFNKSTATQPSKN-QVVAVEFDTWTNPN 136
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD
domain, CBM44, carbohydrate BI module, beta-sandwich
proteins, cellulosome; 2.0A {Clostridium thermocellum}
PDB: 2c26_A
Length = 260
Score = 29.3 bits (65), Expect = 5.9
Identities = 21/158 (13%), Positives = 37/158 (23%), Gaps = 13/158 (8%)
Query: 135 TAIKPFGAAAPQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQN-------- 186
T+ + T+ T A G + +F +
Sbjct: 94 TSATGDNSKFNFEDGTLGGFTTSGTNATGVVVNTTEKAFKGERGLKWTVTSEGEGTAELK 153
Query: 187 -KPTFNLGGSTTSTGFGFGTNTATNNTSLFGQKPATNTFG-LPTNTASPFGTSTSFGAQP 244
+ TT T + + A P T + + N+ T
Sbjct: 154 LDGGTIVVPGTTMTFRIWIPSGAPIAAIQPYIMPHTPDWSEVLWNSTWKGYTMVKTDDWN 213
Query: 245 AQTSTLFNSFN---KPTPGFQFNTNTTPNTSLANNAFS 279
T TL + G Q T ++ +A
Sbjct: 214 EITLTLPEDVDPTWPQQMGIQVQTIDEGEFTIYVDAID 251
>2i71_A Hypothetical protein; structural genomics, APC6294, PSI-2, protein
structure initia midwest center for structural genomics,
MCSG; 1.70A {Sulfolobus solfataricus} SCOP: e.72.1.1
Length = 400
Score = 29.4 bits (65), Expect = 6.5
Identities = 31/225 (13%), Positives = 65/225 (28%), Gaps = 28/225 (12%)
Query: 713 KMFVSTPIQPPPAPHVETQTLIKEKISPSP--KQKLRNEILVKEMNRNYVSSDISKNILN 770
++ S P+ + V+ + KISP K + + N + SD I
Sbjct: 180 SLYNSDPVGKDVSDTVKLHEIEAIKISPLSGLKYVTYQILNKDKNFFNKIFSDSVNAIPR 239
Query: 771 IDETMDYIESSTEALARHMGTDPYKVQLMKQCFEDTFDNYGFPMSVSREFYIENKAHYSG 830
+D L+ + K + ++V + +H
Sbjct: 240 FATALDN--GLFIYLSEKDSSLHLKRLEDDLSKDPLLTPSENEINVVYKDMKYALSH--- 294
Query: 831 GSLFKTGNFIQPTVDLSPSARTLSPTSELELEDEDDDHSTVASGVLVLDNKPNKLEVVPV 890
+LF + VDL L + ++ + ++ +N+ +K+E +
Sbjct: 295 -ALFYVISRFSGNVDLD------------TLRHYAETYADKVTRAII-ENEVDKIEKYQM 340
Query: 891 KFYQCRLSQKDSNITNDSNKNNFL-------NVEYAKKLDRKFSI 928
+ L + +K Y K K +
Sbjct: 341 GSERKLLGEYMKVEGKGFDKRILYAHGGLPYAGTYVYKEKDKVYV 385
>1o6o_D Nucleoporin NSP1; nuclear transport, nuclear trafficking, transport
factor, repeat, protein transport; 2.80A {Saccharomyces
cerevisiae}
Length = 119
Score = 28.4 bits (62), Expect = 6.7
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 155 TSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGFGTNTATNNTSL 214
++++ + + SFG ++ N +KP F+ G + + +
Sbjct: 4 STKSNEKKDSGSSKPAFSFGAKPDEKKNDEVSKPAFSFGAKANEK----KESDESKSAFS 59
Query: 215 FGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNTNTTPNTSLA 274
FG KP G A SFGA+P + + + P F F
Sbjct: 60 FGSKPTGKEEGDGAKAAI------SFGAKPEEQKSS----DTSKPAFTFGAQKDNEKK-T 108
Query: 275 NNAFSGTLFG 284
+ +G
Sbjct: 109 EESSTGKSMQ 118
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus
protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Length = 570
Score = 29.4 bits (64), Expect = 8.8
Identities = 43/292 (14%), Positives = 74/292 (25%), Gaps = 16/292 (5%)
Query: 38 GSKEFLVSATGSFFGTTPQPSMFGTNTSTAQPATSLFGATENKPLFGQSTTTFGQPTNTF 97
G + + G Q F A+S + +PL+ S
Sbjct: 271 GDLQGNLWRFDLIAGKVNQDDPFSRANDGPAVASSFRVSFGGQPLY--SAVDSAGAAQAI 328
Query: 98 GTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAAAPQTSNLFATNTSQ 157
SL P G V + + F + A +G QT A +T +
Sbjct: 329 TAAPSLVRHPTRK-GYIVIFGTGKY-FENADARADTSRAQTLYGIWDQQTKGEAAGSTPR 386
Query: 158 ATTAFGAPQTSGFGSFGTNQNQSLNFNQ--NKPTFNLGGSTTSTGFGFGTNTATNNT--- 212
T QT + T + + P L ++ G+ + N T
Sbjct: 387 LTRGNLQQQTLDLQADSTFASTARTIRIASQNPVNWLNNDGSTKQSGWYLDFMVNGTLKG 446
Query: 213 -------SLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQFNT 265
GQ T + + ++ ++G P + ++
Sbjct: 447 EMLIEDMIAIGQVVLLQTITPNDDPCADGASNWTYGLDPYTGGRTSFTVFDLARQGVVDS 506
Query: 266 NTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANT 317
+ + + N A SGT N N G
Sbjct: 507 KSDYSYNKQNVAVSGTEQKGLGGLTLSTNEQGNPEVCSSGECLTVNPGPNTR 558
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.367
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,469,687
Number of extensions: 890132
Number of successful extensions: 1394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1328
Number of HSP's successfully gapped: 83
Length of query: 1121
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1017
Effective length of database: 3,798,009
Effective search space: 3862575153
Effective search space used: 3862575153
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.6 bits)