RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17507
         (1121 letters)



>g1ko6.1 b.119.1.1 (A:,B:) C-terminal autoproteolytic domain of
           nucleoporin nup98 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 158

 Score =  199 bits (508), Expect = 8e-60
 Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 4/156 (2%)

Query: 545 KLTRKGYFVSPTLNELKQLKTKNGPCIVEGFTIGHEEFGSICFLESIDISELNNVDLDSI 604
            LT+ GY+  P++++L ++  + G CIV  FTIG + +GSI F   ++   L N++LD I
Sbjct: 7   ILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVN---LTNLNLDDI 63

Query: 605 VEFRFKEVVLYPDDANKPPVGTALNRPAKVTLLKVWPKDKSTGELIKDVQKIKNMNYEAI 664
           V  R KEVV+Y DD  KPPVG  LNR A+VTL  VWP DK++  LIK   ++ ++NYE  
Sbjct: 64  VHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGR 123

Query: 665 VIRACTRMNVEFVSYQPETGSWCFKVQHFSKYGLLE 700
           +     +   +F  Y+PETGSW FKV HF  YGL +
Sbjct: 124 LEAVSRKQGAQFKEYRPETGSWVFKVSHFK-YGLQD 158


>d1daba_ b.80.1.7 (A:) Virulence factor P.69 pertactin {Bordetella
           pertussis [TaxId: 520]}
          Length = 539

 Score = 41.0 bits (94), Expect = 7e-04
 Identities = 26/250 (10%), Positives = 47/250 (18%), Gaps = 3/250 (1%)

Query: 84  GQSTTTFGQPTNTFGTTNSLFGKPNTGFGAAVSTQSNTFSFNPTTFGQPNTTAIKPFGAA 143
             +           G     FG    G         +    +                  
Sbjct: 229 ALAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIR 288

Query: 144 APQTSNLFATNTSQATTAFGAPQTSGFGSFGTNQNQSLNFNQNKPTFNLGGSTTSTGFGF 203
             + + +     S +       +T G   F           Q                  
Sbjct: 289 VGRGARVTVPGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEP 348

Query: 204 GTNTATNNTSLFGQKPATNTFGLPTNTASPFGTSTSFGAQPAQTSTLFNSFNKPTPGFQF 263
              T T      G   AT    +P  +  P   + +  A+    +   +S +     +  
Sbjct: 349 VKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVM 408

Query: 264 NTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFGSNTGNANTFGQGLN 323
             N+        +  S                      L G+  F  N          L 
Sbjct: 409 TDNSNVGALRLASDGSVDFQQPAEAGRF---KVLTVNTLAGSGLFRMNVFADLGLSDKLV 465

Query: 324 SSFNLGGTSN 333
              +  G   
Sbjct: 466 VMQDASGQHR 475


>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto
           virus [TaxId: 103782]}
          Length = 395

 Score = 28.8 bits (64), Expect = 3.6
 Identities = 20/127 (15%), Positives = 31/127 (24%), Gaps = 21/127 (16%)

Query: 178 NQSLNFNQNKPTFNLGGSTTSTGF-----GFGTNTATNN-------TSLFGQKPATNTFG 225
             S+ F  N  T+ +        +       G    T          + FG   + N   
Sbjct: 87  TTSVVFTPNTDTYIVVAPVPGFAYFRAEVAVGAQPTTFVGVPYPTYATNFGAG-SQNGLP 145

Query: 226 LPTNTASPFGTSTSFGAQPAQTSTLFN--------SFNKPTPGFQFNTNTTPNTSLANNA 277
              N +     S + G  P      F+          N         T  TP   +  N 
Sbjct: 146 AVNNYSKFRYASMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAVTAITPAPGVFANF 205

Query: 278 FSGTLFG 284
               + G
Sbjct: 206 VDKRING 212


>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A
           [TaxId: 5061]}
          Length = 359

 Score = 28.2 bits (62), Expect = 5.7
 Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 1/99 (1%)

Query: 250 LFNSFNKPTPGFQFNTNTTPNTSLANNAFSGTLFGNTAKPAGLFGNSTNTGGLFGNSTFG 309
             N++     G  F            N F              F   ++T G   ++  G
Sbjct: 248 AVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLG 307

Query: 310 SNTGNANTFGQGLNSSFNLGGTSNTFNNPLAPQAPPASN 348
                 N FG     S +     + F       A   ++
Sbjct: 308 -RDCVINGFGSSGTFSEDSTSFLSDFEGKNIASASAYTS 345


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.367 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,761,547
Number of extensions: 170750
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 25
Length of query: 1121
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1026
Effective length of database: 1,103,246
Effective search space: 1131930396
Effective search space used: 1131930396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.3 bits)