BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17509
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N23|B Chain B, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|D Chain D, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|B Chain B, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|D Chain D, Crystal Structure Of The Sodium-Potassium Pump
Length = 277
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 7 IFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAAS 66
I LFYVIFY LA +F + V++ T+++ P Q + PGL P S E
Sbjct: 9 ILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVA----PPGLTQIPQSQKTE--- 61
Query: 67 LIRYKINNTESASMWTKEIDNYLE--GNLLFPDLEVYKNPQKLPGN-QVKCDYDNPPPQG 123
I ++ N+ +S + I +LE +L D ++++ +P + + +Y+N +
Sbjct: 62 -ISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVPSELKERGEYNNERGER 120
Query: 124 KICEIELEKNMGPCT--EAFNYGFTAGKPCVFIKLNKENGYS 163
K+C LE +G C+ YG+ GKPCV IKLN+ G+
Sbjct: 121 KVCRFRLEW-LGNCSGLNDETYGYKDGKPCVIIKLNRVLGFK 161
>pdb|3KDP|B Chain B, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|D Chain D, Crystal Structure Of The Sodium-potassium Pump
Length = 286
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 7 IFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAAS 66
I LFYVIFY LA +F + V++ T+++ P Q + PGL P S E
Sbjct: 18 ILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVA----PPGLTQIPQSQKTE--- 70
Query: 67 LIRYKINNTESASMWTKEIDNYLE--GNLLFPDLEVYKNPQKLPGN-QVKCDYDNPPPQG 123
I ++ N+ +S + I +LE +L D ++++ +P + + +Y+N +
Sbjct: 71 -ISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVPSELKERGEYNNERGER 129
Query: 124 KICEIELEKNMGPCT--EAFNYGFTAGKPCVFIKLNKENGYS 163
K+C LE +G C+ YG+ GKPCV IKLN+ G+
Sbjct: 130 KVCRSRLEW-LGNCSGLNDETYGYKDGKPCVIIKLNRVLGFK 170
>pdb|2ZXE|B Chain B, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
Length = 305
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 74/167 (44%), Gaps = 26/167 (15%)
Query: 7 IFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAAS 66
IFLFY+IFY LA +F + VL+ TL+D PK Q D PGL P + E
Sbjct: 36 IFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQ-DRV---APPGLSHAPYAIKTE--- 88
Query: 67 LIRYKINNTESASMWTKEIDNYLE--------GNLLFPDLEVYKNPQKLPGNQVK-CDYD 117
I + I+N +S + K + ++ GN F D P + +K D D
Sbjct: 89 -ISFSISNPKSYESFVKSMHKLMDLYNESSQAGNSPFEDC------SDTPADYIKRGDLD 141
Query: 118 NPPPQGKICEIE--LEKNMGPCTEAFNYGFTAGKPCVFIKLNKENGY 162
+ Q K C KN + YG+ GKPCV KLN+ G+
Sbjct: 142 DSQGQKKACRFSRMWLKNCSGLDDT-TYGYAEGKPCVVAKLNRIIGF 187
>pdb|3A3Y|B Chain B, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 305
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 74/167 (44%), Gaps = 26/167 (15%)
Query: 7 IFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAAS 66
IFLFY+IFY LA +F + VL+ TL+D PK Q D PGL P + E
Sbjct: 36 IFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQ-DRV---APPGLSHAPYAIKTE--- 88
Query: 67 LIRYKINNTESASMWTKEIDNYLE--------GNLLFPDLEVYKNPQKLPGNQVK-CDYD 117
I + I+N +S + K + ++ GN F D P + +K D D
Sbjct: 89 -ISFSISNPKSYESFVKSMHKLMDLYNESSQAGNSPFEDC------SDTPADYIKRGDLD 141
Query: 118 NPPPQGKICEIE--LEKNMGPCTEAFNYGFTAGKPCVFIKLNKENGY 162
+ Q K C KN + YG+ GKPCV KLN+ G+
Sbjct: 142 DSQGQKKACRFSRMWLKNCSGLDDT-TYGYAEGKPCVVAKLNRIIGF 187
>pdb|3IXZ|B Chain B, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|B Chain B, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|B Chain B, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 290
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 22/160 (13%)
Query: 7 IFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAAS 66
I L+YV FY +++ +FA+C+YVLM T+ P Q +PG+ RP E
Sbjct: 40 ISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQLK----SPGVTLRPDVYG-EKGL 94
Query: 67 LIRYKINNTESASMWTKEIDNYL--------EGNLLFPDLEVYKNPQKLPGNQVKCDYDN 118
I Y ++++ + + + +L EG++ + + L N K
Sbjct: 95 DISYNVSDSTTWAGLAHTLHRFLAGYSPAAQEGSINCTSEKYFFQESFLAPNHTKFS--- 151
Query: 119 PPPQGKICEIELEKNMGPCTEAFNYGFTAGKPCVFIKLNK 158
K L+ G F GF GKPC IK+N+
Sbjct: 152 ----CKFTADMLQNCSGRPDPTF--GFAEGKPCFIIKMNR 185
>pdb|3B8E|B Chain B, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|D Chain D, Crystal Structure Of The Sodium-Potassium Pump
Length = 46
Score = 32.3 bits (72), Expect = 0.14, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 7 IFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQ 41
I LFYVIFY LA +F + V++ T+++ P Q
Sbjct: 8 ILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ 42
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 50 NPGLGFRPMS---SDPEAASLIRYKINNTESASMWTK----EIDNYLEGNLLFPDLEV-- 100
G+ F+ +S S P A +R ++ TK E ++ G ++ L V
Sbjct: 20 TKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGF 79
Query: 101 --YKNPQKLPGNQVKCDYDNPPPQGKICEIELEKNMGP 136
+ KLPG+ KC +D +G E++ ++ +GP
Sbjct: 80 VALRKAGKLPGDVCKCTFDMEYQKGVTIEVQ-KRQLGP 116
>pdb|3IHL|A Chain A, Human Ctps2 Crystal Structure
pdb|3IHL|B Chain B, Human Ctps2 Crystal Structure
Length = 282
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 70 YKINNTESASMWTKEIDNYLEGNLLFPDLEVYKN----PQKLPGNQVKCDYDNPPPQGKI 125
YK NN + ++ I+ G+ L ++V + Q+ NQ K D + +I
Sbjct: 83 YKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAVQEWVMNQAKVPVDGNKEEPQI 142
Query: 126 CEIELEKNMG-----PCTEAF-NYGFTAGK 149
C IEL +G P EAF + F A +
Sbjct: 143 CVIELGGTIGDIEGMPFVEAFRQFQFKAKR 172
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 76 ESASMWTKEIDNYLEGNLLFPDLE 99
E+ + +T +ID Y++ LL PD+E
Sbjct: 239 EAKARFTDQIDEYIKDKLLAPDME 262
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 28 VLMSTLTDEYPKLQLDE-SIIGVNPGLGFRPMSSDPEAASLIRYKINNTESASMWTKEID 86
L+ TLT E +Q ++ ++ + +G +S + A LI +K N + +W E++
Sbjct: 4 TLLKTLTPELHLVQHNDIPVLHLKHAVGTAKIS--LQGAQLISWKPQNAKQDVLWLSEVE 61
Query: 87 NYLEGNLL 94
+ GN +
Sbjct: 62 PFKNGNAI 69
>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
Length = 781
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 102 KNPQKLPGNQVKCDYDN 118
+NP LPGN V+C Y +
Sbjct: 203 QNPNSLPGNDVRCIYKD 219
>pdb|1FM2|B Chain B, The 2 Angstrom Crystal Structure Of Cephalosporin Acylase
pdb|1JVZ|B Chain B, Structure Of Cephalosporin Acylase In Complex With
Glutaryl- 7-Aminocephalosporanic Acid
pdb|1JW0|B Chain B, Structure Of Cephalosporin Acylase In Complex With
Glutarate
Length = 520
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 26 WTTDYFTYYEAHLVTPDFEIYGATQ 50
>pdb|2AE4|B Chain B, Glutaryl 7-Aminocephalosporanic Acid Acylase: Mutational
Study Of Activation Mechanism
pdb|3JTR|B Chain B, Mutations In Cephalosporin Acylase Affecting Stability And
Autoproteolysis
Length = 528
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 26 WTTDYFTYYEAHLVTPDFEIYGATQ 50
>pdb|1GK1|B Chain B, Structure-Based Prediction Of Modifications In
Glutarylamidase To Allow Single-Step Enzymatic
Production Of 7-Aminocephalosporanic Acid From
Cephalosporin C
pdb|1GK1|D Chain D, Structure-Based Prediction Of Modifications In
Glutarylamidase To Allow Single-Step Enzymatic
Production Of 7-Aminocephalosporanic Acid From
Cephalosporin C
Length = 522
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 26 WTTDYFTYYEAHLVTPDFEIYGATQ 50
>pdb|2AE5|B Chain B, Glutaryl 7-Aminocephalosporanic Acid Acylase: Mutational
Study Of Activation Mechanism
Length = 528
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 26 WTTDYFTYYEAHLVTPDFEIYGATQ 50
>pdb|1OR0|B Chain B, Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid
Acylase: Insight Into Autoproteolytic Activation
pdb|1OR0|D Chain D, Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid
Acylase: Insight Into Autoproteolytic Activation
Length = 528
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 26 WTTDYFTYYEAHLVTPDFEIYGATQ 50
>pdb|3JTQ|B Chain B, Mutations In Cephalosporin Acylase Affecting Stability And
Autoproteolysis
Length = 528
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 26 WTTDYFTYYEAHLVTPDFEIYGATQ 50
>pdb|1GK0|B Chain B, Structure-Based Prediction Of Modifications In
Glutarylamidase To Allow Single-Step Enzymatic
Production Of 7-Aminocephalosporanic Acid From
Cephalosporin C
pdb|1GK0|D Chain D, Structure-Based Prediction Of Modifications In
Glutarylamidase To Allow Single-Step Enzymatic
Production Of 7-Aminocephalosporanic Acid From
Cephalosporin C
pdb|1GHD|B Chain B, Crystal Structure Of The Glutaryl-7-Aminocephalosporanic
Acid Acylase By Mad Phasing
Length = 522
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 26 WTTDYFTYYEAHLVTPDFEIYGATQ 50
>pdb|3PJZ|A Chain A, Crystal Structure Of The Potassium Transporter Trkh From
Vibrio Parahaemolyticus
pdb|3PJZ|B Chain B, Crystal Structure Of The Potassium Transporter Trkh From
Vibrio Parahaemolyticus
Length = 494
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 14 FYSILACLFAICMYVLMSTLTDEYPKLQ-LDESIIGVNPGLG 54
F+S A +F +CM L++T DE + ++ + PGLG
Sbjct: 402 FFSAYALVFVVCMLGLIATGMDELSAFSAVAATLNNLGPGLG 443
>pdb|1KEH|A Chain A, Precursor Structure Of Cephalosporin Acylase
Length = 689
Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 195 WTTDYFTYYEAHLVTPDFEIYGATQ 219
>pdb|2AE3|B Chain B, Glutaryl 7-Aminocephalosporanic Acid Acylase: Mutational
Study Of Activation Mechanism
Length = 528
Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 26 WTTDYFTYYEAHLVTPDFEIYGATQ 50
>pdb|3S8R|A Chain A, Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid
Acylase: Insight Into Autoproteolytic Activation
pdb|3S8R|B Chain B, Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid
Acylase: Insight Into Autoproteolytic Activation
Length = 697
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
WT + Y E +L+ PD E+Y Q
Sbjct: 195 WTTDYFTYYEAHLVTPDFEIYGATQ 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,615,816
Number of Sequences: 62578
Number of extensions: 238901
Number of successful extensions: 410
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 30
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)