Query psy17509
Match_columns 171
No_of_seqs 107 out of 295
Neff 5.6
Searched_HMMs 46136
Date Sat Aug 17 00:23:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01107 Na_K_ATPase_bet Sodi 100.0 4.2E-51 9.1E-56 351.3 14.4 146 2-165 34-191 (289)
2 PF00287 Na_K-ATPase: Sodium / 100.0 2.1E-51 4.5E-56 353.4 11.4 147 2-166 35-192 (289)
3 KOG3927|consensus 100.0 3.8E-47 8.3E-52 327.6 15.6 154 1-169 41-199 (300)
4 PF11395 DUF2873: Protein of u 81.1 3.5 7.6E-05 25.8 3.8 26 7-32 6-31 (43)
5 PF05399 EVI2A: Ectropic viral 65.3 8 0.00017 32.8 3.5 22 12-33 131-152 (227)
6 PF03908 Sec20: Sec20; InterP 41.3 33 0.00072 24.4 3.0 20 12-31 71-90 (92)
7 PF06716 DUF1201: Protein of u 41.3 51 0.0011 21.6 3.5 21 10-30 8-28 (54)
8 PF01007 IRK: Inward rectifier 35.8 59 0.0013 28.9 4.3 27 3-29 33-59 (336)
9 PF03896 TRAP_alpha: Transloco 35.1 43 0.00093 29.3 3.3 22 13-34 209-230 (285)
10 TIGR03779 Bac_Flav_CT_M Bacter 31.2 37 0.0008 31.3 2.3 19 13-31 9-27 (410)
11 PF04210 MtrG: Tetrahydrometha 28.6 87 0.0019 22.0 3.3 19 13-31 49-67 (70)
12 PF15156 CLN6: Ceroid-lipofusc 28.5 56 0.0012 28.2 2.8 39 13-60 236-274 (284)
13 PF13989 YejG: YejG-like prote 26.7 40 0.00087 25.5 1.4 40 50-89 19-62 (106)
14 PHA02650 hypothetical protein; 26.0 1.6E+02 0.0035 21.2 4.4 23 3-25 46-68 (81)
15 PRK14125 cell division suppres 25.8 99 0.0022 22.8 3.4 18 4-23 5-22 (103)
16 TIGR01294 P_lamban phospholamb 25.1 1.2E+02 0.0027 19.7 3.3 21 10-30 31-51 (52)
17 PF09889 DUF2116: Uncharacteri 24.9 96 0.0021 20.9 2.9 19 10-28 38-56 (59)
18 KOG0092|consensus 24.2 1E+02 0.0022 25.8 3.5 35 55-89 70-107 (200)
19 COG3763 Uncharacterized protei 23.8 2.7E+02 0.0058 19.6 5.1 34 1-34 1-34 (71)
20 PF14333 DUF4389: Domain of un 22.6 2.3E+02 0.0049 19.8 4.7 25 6-30 11-35 (80)
21 PF02669 KdpC: K+-transporting 22.4 2.4E+02 0.0052 23.3 5.4 44 1-48 1-44 (188)
22 COG4698 Uncharacterized protei 20.9 2.5E+02 0.0054 23.4 5.1 57 14-89 15-71 (197)
23 PF09451 ATG27: Autophagy-rela 20.7 88 0.0019 26.6 2.6 28 3-30 199-226 (268)
24 PF09796 QCR10: Ubiquinol-cyto 20.6 1.1E+02 0.0024 21.0 2.6 47 6-54 4-50 (64)
25 PF07234 DUF1426: Protein of u 20.4 1.3E+02 0.0029 22.7 3.2 32 10-41 11-42 (117)
26 PRK14000 potassium-transportin 20.4 2.8E+02 0.0061 22.9 5.4 35 1-35 1-35 (185)
27 PF10968 DUF2770: Protein of u 20.3 1.2E+02 0.0025 18.7 2.3 14 8-21 16-29 (36)
28 PRK11835 hypothetical protein; 20.0 65 0.0014 24.7 1.4 40 50-89 22-65 (114)
No 1
>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit. This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.
Probab=100.00 E-value=4.2e-51 Score=351.29 Aligned_cols=146 Identities=27% Similarity=0.571 Sum_probs=129.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCcccccCCCCCcCCceeEEEecCCchhHHHH
Q psy17509 2 AIIRGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAASLIRYKINNTESASMW 81 (171)
Q Consensus 2 ~~w~~I~lFYlifY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig~~PGL~~~P~~~~~~~~~~I~y~~~~~~s~~~y 81 (171)
.+|++|+|||+|||+|||+|||+||||||+|||+++|+||++. ++|||++||.. +.++|+|+++++++|++|
T Consensus 34 ~sW~kIllFYliFY~~La~~F~~~m~v~l~Tl~~~~Pk~q~~~----~~PGL~~rP~~----~~~eI~f~~~~~~s~~~y 105 (289)
T TIGR01107 34 GSWFKILLFYLVFYGCLAGIFIGTIQVMLQTISDFTPKYQDRV----ASPGLTQRPKV----QKLEISFNVSDPSSYEGY 105 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcCC----CCCceeeccCC----CceEEEEeCCChHHHHHH
Confidence 4899999999999999999999999999999999999999654 59999999965 447899999999999999
Q ss_pred HHHHHHHhhhccCCCCccccCCCCCCCCCcCCCCC----CC------CCCCCCceeecccCcccCCCC--CCCCccCCCC
Q psy17509 82 TKEIDNYLEGNLLFPDLEVYKNPQKLPGNQVKCDY----DN------PPPQGKICEIELEKNMGPCTE--AFNYGFTAGK 149 (171)
Q Consensus 82 v~~l~~fL~~~~~~~~~~~Y~~~~~~~~~~~~C~~----~~------~~~~~~~C~F~~~~~lg~Cs~--~~~yGY~~g~ 149 (171)
+++|++|| ++|++..|..++.++|.. .+ ...++++|+|++++ ||+||+ |++|||++|+
T Consensus 106 v~~l~~FL---------~~Y~~~~q~~~~~~~C~~~~~~~~~~~~~~~~~~~~~C~F~~~~-Lg~Cs~~~D~~fGY~~Gk 175 (289)
T TIGR01107 106 VQNLHKFL---------KPYNDSAQEDKNLFDCGDGAEYEQRGPFNAPYGTKKACQFKRDW-LGNCSGLNDPTFGYSEGK 175 (289)
T ss_pred HHHHHHHH---------HhhchhhccccccccCCccccccccCCccccccccccceecHHh-ccCCCCCCCCCcCcCCCC
Confidence 99999999 999997664434578942 21 22356899999999 999997 5569999999
Q ss_pred cEEEEEeccccceecc
Q psy17509 150 PCVFIKLNKENGYSHD 165 (171)
Q Consensus 150 PCV~iKLNrI~gw~P~ 165 (171)
||||||||||+||+|+
T Consensus 176 PCI~iKLNrIig~~P~ 191 (289)
T TIGR01107 176 PCIIIKMNRIIGFKPK 191 (289)
T ss_pred CeEEEEeeeeeCcccC
Confidence 9999999999999998
No 2
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=100.00 E-value=2.1e-51 Score=353.39 Aligned_cols=147 Identities=37% Similarity=0.808 Sum_probs=100.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCcccccCCCCCcCCceeEEEecCCchhHHHH
Q psy17509 2 AIIRGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAASLIRYKINNTESASMW 81 (171)
Q Consensus 2 ~~w~~I~lFYlifY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig~~PGL~~~P~~~~~~~~~~I~y~~~~~~s~~~y 81 (171)
.+|++|+|||+|||++||+|||+||||||+|||+++|+||++ +++|||++||+++. ++++|+|+.+++++|++|
T Consensus 35 ~sW~~I~lFYlifY~~La~lfa~~m~v~l~tld~~~Pk~~~~----~~~PGL~~rP~~~~--~s~~I~f~~s~~~s~~~y 108 (289)
T PF00287_consen 35 KSWGKILLFYLIFYAFLAALFAICMWVFLQTLDPDVPKYQDR----GSNPGLGFRPNPDT--ESTLISFNASDPSSYQPY 108 (289)
T ss_dssp STHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSSSS-S-STT----S-S--EEESS--TT----SEEEE-TT-SGGGHHH
T ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHHHHCCCCCCceecc----cccceeeecCCCCc--CcceEEEECCCchhHHHH
Confidence 589999999999999999999999999999999999999954 57999999999965 789999999999999999
Q ss_pred HHHHHHHhhhccCCCCccccCCCCCCCCCcCCCCCC---------CCCCCCCceeecccCcccCCCCC--CCCccCCCCc
Q psy17509 82 TKEIDNYLEGNLLFPDLEVYKNPQKLPGNQVKCDYD---------NPPPQGKICEIELEKNMGPCTEA--FNYGFTAGKP 150 (171)
Q Consensus 82 v~~l~~fL~~~~~~~~~~~Y~~~~~~~~~~~~C~~~---------~~~~~~~~C~F~~~~~lg~Cs~~--~~yGY~~g~P 150 (171)
+++|++|| ++|++.++.. .++|+.+ .+...+++|+|++++ ||+|++. +.|||++|+|
T Consensus 109 v~~L~~FL---------~~Y~~~~~~~--~~~C~~g~~~~~~~~~~~~~~~~~C~F~~~~-lg~Cs~~~d~~~GY~~g~P 176 (289)
T PF00287_consen 109 VDRLDEFL---------KPYNDSSQKN--NENCDPGQYFEQPDFGSPNPPKKACQFDRSW-LGPCSGENDPTFGYSSGKP 176 (289)
T ss_dssp HHHHHHHH---------HCC-TTTS-S--EE---S-S----SSSSSSSSS--EE---GGG-STTS----SSS----SSS-
T ss_pred HHHHHHHH---------HHhccccccc--cccCCCcceeecCccccCCCCCcEeEEechh-hccCCCCCCCCccccCCCc
Confidence 99999999 9999987654 6788743 234678999999999 9999974 4599999999
Q ss_pred EEEEEeccccceeccc
Q psy17509 151 CVFIKLNKENGYSHDY 166 (171)
Q Consensus 151 CV~iKLNrI~gw~P~~ 166 (171)
|||||||||+||+|++
T Consensus 177 CI~lKlNri~gw~P~~ 192 (289)
T PF00287_consen 177 CIFLKLNRIIGWKPEP 192 (289)
T ss_dssp EEEEEE---BT---S-
T ss_pred eEEEEcccccCccccc
Confidence 9999999999999996
No 3
>KOG3927|consensus
Probab=100.00 E-value=3.8e-47 Score=327.62 Aligned_cols=154 Identities=32% Similarity=0.720 Sum_probs=142.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCcccccCCCCCcCCceeEEEecCCchhHHH
Q psy17509 1 MAIIRGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAASLIRYKINNTESASM 80 (171)
Q Consensus 1 ~~~w~~I~lFYlifY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig~~PGL~~~P~~~~~~~~~~I~y~~~~~~s~~~ 80 (171)
+.+|++|+|||+|||++||+|||+|||+|++|||+++|+|+ ++ +++|||++||.+... ++++|+|+.+++++|++
T Consensus 41 ~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~---~~~PGl~~~P~~~~~-~~~~i~~~~~~~~~~~~ 115 (300)
T KOG3927|consen 41 GSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DS---GANPGLSFRPNPPRT-DSTLISFNPSDPKSYAN 115 (300)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc---CCCCceeecCCCCcC-cceeEEEeCCChhhHHH
Confidence 45899999999999999999999999999999999999999 54 689999999999877 99999999999999999
Q ss_pred HHHHHHHHhhhccCCCCccccCCCCCCCC---CcCCCCCCCCCCCCCceeecccCcccCCC--CCCCCccCCCCcEEEEE
Q psy17509 81 WTKEIDNYLEGNLLFPDLEVYKNPQKLPG---NQVKCDYDNPPPQGKICEIELEKNMGPCT--EAFNYGFTAGKPCVFIK 155 (171)
Q Consensus 81 yv~~l~~fL~~~~~~~~~~~Y~~~~~~~~---~~~~C~~~~~~~~~~~C~F~~~~~lg~Cs--~~~~yGY~~g~PCV~iK 155 (171)
|+++|++|| ++|++.++.+. +..+|.+.++..+..+|+|+++. |++|+ .+++|||++|+||||||
T Consensus 116 ~~~~i~~fL---------~kY~d~~~~~~~~~~~~~~~~~q~~~~~~~ckfd~~~-f~~cs~~~d~~~Gy~~g~Pci~ik 185 (300)
T KOG3927|consen 116 YVDRIDDFL---------KKYNDNGQEPRMGVNIDNCWFYQPGTPTVACKFDLDG-FGNCSGSNDDNFGYSKGQPCIFLK 185 (300)
T ss_pred HHHHHHHHH---------HhhCcccccccccccCcccccccCCCCCceEEecHHH-cCcCccccCCCccccCCCceEEEE
Confidence 999999999 99999765442 67778888888888899999999 99995 67889999999999999
Q ss_pred eccccceecccccC
Q psy17509 156 LNKENGYSHDYRLV 169 (171)
Q Consensus 156 LNrI~gw~P~~y~~ 169 (171)
||||+||+|+.|+.
T Consensus 186 lNri~G~~Pe~~~~ 199 (300)
T KOG3927|consen 186 LNRILGWKPELYNR 199 (300)
T ss_pred eeeecCCccccCCC
Confidence 99999999999886
No 4
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=81.14 E-value=3.5 Score=25.83 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17509 7 IFLFYVIFYSILACLFAICMYVLMST 32 (171)
Q Consensus 7 I~lFYlifY~~La~~Fa~~m~v~~~t 32 (171)
++=||++|-++|..+..+++.+|...
T Consensus 6 l~dfylc~l~~llflv~imliif~f~ 31 (43)
T PF11395_consen 6 LFDFYLCFLSFLLFLVIIMLIIFWFS 31 (43)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999988888888777543
No 5
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=65.33 E-value=8 Score=32.76 Aligned_cols=22 Identities=41% Similarity=0.760 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy17509 12 VIFYSILACLFAICMYVLMSTL 33 (171)
Q Consensus 12 lifY~~La~~Fa~~m~v~~~tl 33 (171)
+|+.+++|.||.||-..|++|+
T Consensus 131 LIClIIIAVLfLICT~LfLSTV 152 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLFLSTV 152 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777899999999999999873
No 6
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=41.27 E-value=33 Score=24.40 Aligned_cols=20 Identities=10% Similarity=0.514 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17509 12 VIFYSILACLFAICMYVLMS 31 (171)
Q Consensus 12 lifY~~La~~Fa~~m~v~~~ 31 (171)
+++++.++.|+++|+||++.
T Consensus 71 ~li~~~~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 71 ILIFFAFLFFLLVVLYILWR 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45556677778888898863
No 7
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=41.26 E-value=51 Score=21.65 Aligned_cols=21 Identities=29% Similarity=0.959 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17509 10 FYVIFYSILACLFAICMYVLM 30 (171)
Q Consensus 10 FYlifY~~La~~Fa~~m~v~~ 30 (171)
|-+.-+++|.++|..|+.+++
T Consensus 8 ~L~~~F~~lIC~Fl~~~~~F~ 28 (54)
T PF06716_consen 8 YLLLAFGFLICLFLFCLVVFI 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334456888888888887764
No 8
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=35.76 E-value=59 Score=28.95 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17509 3 IIRGIFLFYVIFYSILACLFAICMYVL 29 (171)
Q Consensus 3 ~w~~I~lFYlifY~~La~~Fa~~m~v~ 29 (171)
.|..+++++++.|.+.-.+||+..|++
T Consensus 33 ~W~~~l~~f~~~y~~~~~~Fa~~y~~i 59 (336)
T PF01007_consen 33 SWRWFLLLFVLSYLLSWLFFALLYYLI 59 (336)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeeeehhHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999877766
No 9
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=35.11 E-value=43 Score=29.30 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q psy17509 13 IFYSILACLFAICMYVLMSTLT 34 (171)
Q Consensus 13 ifY~~La~~Fa~~m~v~~~tl~ 34 (171)
.+|++|++++++.+|..++.+.
T Consensus 209 FLY~~l~a~~~l~l~~~~~~l~ 230 (285)
T PF03896_consen 209 FLYLFLAALGVLGLYFVYQFLP 230 (285)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999998888764
No 10
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=31.23 E-value=37 Score=31.30 Aligned_cols=19 Identities=5% Similarity=0.445 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17509 13 IFYSILACLFAICMYVLMS 31 (171)
Q Consensus 13 ifY~~La~~Fa~~m~v~~~ 31 (171)
++|.+|..+|++|||.++.
T Consensus 9 lV~~lm~l~flg~~wlIF~ 27 (410)
T TIGR03779 9 LVLPLMGLVFLGSLWLIFA 27 (410)
T ss_pred chHHHHHHHHHHHHHHhcc
Confidence 4567888889999998885
No 11
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=28.65 E-value=87 Score=22.03 Aligned_cols=19 Identities=26% Similarity=0.707 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17509 13 IFYSILACLFAICMYVLMS 31 (171)
Q Consensus 13 ifY~~La~~Fa~~m~v~~~ 31 (171)
|+|++++|+....++..+.
T Consensus 49 IlYG~v~Glii~~~~~~l~ 67 (70)
T PF04210_consen 49 ILYGLVIGLIIFIIYIVLS 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6889999888777766553
No 12
>PF15156 CLN6: Ceroid-lipofuscinosis neuronal protein 6
Probab=28.52 E-value=56 Score=28.20 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCcccccCCCC
Q psy17509 13 IFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSS 60 (171)
Q Consensus 13 ifY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig~~PGL~~~P~~~ 60 (171)
.||++.+.+..+.+||.+.--| |..+ .+-||+-++|-+-
T Consensus 236 l~~SF~~tLllVa~WV~wLWnD---~vLR------kkyPGviYvPePw 274 (284)
T PF15156_consen 236 LFYSFALTLLLVALWVAWLWND---PVLR------KKYPGVIYVPEPW 274 (284)
T ss_pred eHHHHHHHHHHHHHHHHHHhcC---hhhh------hcCCCeEEccCCc
Confidence 5778888888888888864322 2333 3579999999764
No 13
>PF13989 YejG: YejG-like protein
Probab=26.72 E-value=40 Score=25.47 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=24.7
Q ss_pred CCcccccCCCC--CcCCceeEEEecC--CchhHHHHHHHHHHHh
Q psy17509 50 NPGLGFRPMSS--DPEAASLIRYKIN--NTESASMWTKEIDNYL 89 (171)
Q Consensus 50 ~PGL~~~P~~~--~~~~~~~I~y~~~--~~~s~~~yv~~l~~fL 89 (171)
.-|.-+.|.+. .+.+..+|-.+-- +-.+.-.-.++|++-|
T Consensus 19 ~~G~kVEp~p~~~~~~~n~LigLkLLShdg~~aw~im~~L~~sL 62 (106)
T PF13989_consen 19 FAGVKVEPIPLNDADEDNDLIGLKLLSHDGESAWQIMQQLSQSL 62 (106)
T ss_pred CcCceeeecCCcCcCcccceEEEEeeCCCChHHHHHHHHHHHHH
Confidence 56877877764 3455677877652 2233334567788888
No 14
>PHA02650 hypothetical protein; Provisional
Probab=26.03 E-value=1.6e+02 Score=21.23 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy17509 3 IIRGIFLFYVIFYSILACLFAIC 25 (171)
Q Consensus 3 ~w~~I~lFYlifY~~La~~Fa~~ 25 (171)
.|.++.++.++|.++++.+|...
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~fl 68 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFF 68 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655543
No 15
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=25.82 E-value=99 Score=22.83 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy17509 4 IRGIFLFYVIFYSILACLFA 23 (171)
Q Consensus 4 w~~I~lFYlifY~~La~~Fa 23 (171)
|-+ +||++|.++|+.+++
T Consensus 5 ~~~--~~~~ii~~~l~~~~~ 22 (103)
T PRK14125 5 ESK--IHVSIFFVLTALVLL 22 (103)
T ss_pred HHH--HHHHHHHHHHHHHHH
Confidence 555 677777777766433
No 16
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=25.09 E-value=1.2e+02 Score=19.69 Aligned_cols=21 Identities=38% Similarity=0.977 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17509 10 FYVIFYSILACLFAICMYVLM 30 (171)
Q Consensus 10 FYlifY~~La~~Fa~~m~v~~ 30 (171)
.++=|-.+|.++..+|+.||+
T Consensus 31 lfvnf~lilicllli~iivml 51 (52)
T TIGR01294 31 LFINFCLILICLLLICIIVML 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356677788888899998886
No 17
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=24.91 E-value=96 Score=20.94 Aligned_cols=19 Identities=21% Similarity=0.577 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17509 10 FYVIFYSILACLFAICMYV 28 (171)
Q Consensus 10 FYlifY~~La~~Fa~~m~v 28 (171)
+-.+||++++++.++.++.
T Consensus 38 ~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 38 TQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345556665555444443
No 18
>KOG0092|consensus
Probab=24.19 E-value=1e+02 Score=25.84 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=27.6
Q ss_pred ccCCCCCcCCceeEEEecCCchhH---HHHHHHHHHHh
Q psy17509 55 FRPMSSDPEAASLIRYKINNTESA---SMWTKEIDNYL 89 (171)
Q Consensus 55 ~~P~~~~~~~~~~I~y~~~~~~s~---~~yv~~l~~fL 89 (171)
+.|+-..+....+|.|+..+.+|. +.|+++|++=.
T Consensus 70 lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~ 107 (200)
T KOG0092|consen 70 LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA 107 (200)
T ss_pred cccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC
Confidence 667776666788999999997665 67888887765
No 19
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.84 E-value=2.7e+02 Score=19.64 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=18.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy17509 1 MAIIRGIFLFYVIFYSILACLFAICMYVLMSTLT 34 (171)
Q Consensus 1 ~~~w~~I~lFYlifY~~La~~Fa~~m~v~~~tl~ 34 (171)
|.-|..|++--+++-+.+++=|.+..-.+...|-
T Consensus 1 m~l~lail~ivl~ll~G~~~G~fiark~~~k~lk 34 (71)
T COG3763 1 MSLWLAILLIVLALLAGLIGGFFIARKQMKKQLK 34 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777665555555444445555555544443
No 20
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=22.62 E-value=2.3e+02 Score=19.81 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17509 6 GIFLFYVIFYSILACLFAICMYVLM 30 (171)
Q Consensus 6 ~I~lFYlifY~~La~~Fa~~m~v~~ 30 (171)
..++|+++++....+++++++..++
T Consensus 11 ~mi~~~ivl~~~~~~~~~~~~~q~~ 35 (80)
T PF14333_consen 11 LMIPFAIVLSLASIVLGVLVLIQWF 35 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766666666664443
No 21
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=22.41 E-value=2.4e+02 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=32.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccccc
Q psy17509 1 MAIIRGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIG 48 (171)
Q Consensus 1 ~~~w~~I~lFYlifY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig 48 (171)
|..+..-+.+.++|-+++.+++-+.+|.+=|.+-+ +|..+|+|.
T Consensus 1 mr~l~~al~~~~v~~vl~G~~YPl~vtgi~q~~fp----~qAnGSli~ 44 (188)
T PF02669_consen 1 MRNLRPALRLTLVLTVLCGLLYPLAVTGIAQLVFP----DQANGSLIE 44 (188)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCCcCEEe
Confidence 55677777888888888889999999998877644 344555554
No 22
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.93 E-value=2.5e+02 Score=23.40 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCcccccCCCCCcCCceeEEEecCCchhHHHHHHHHHHHh
Q psy17509 14 FYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAASLIRYKINNTESASMWTKEIDNYL 89 (171)
Q Consensus 14 fY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig~~PGL~~~P~~~~~~~~~~I~y~~~~~~s~~~yv~~l~~fL 89 (171)
|...||..+++.+.+....+++..|..+... +++ ..++.|....+ -...-+-|+.+|
T Consensus 15 f~iLLAln~l~~~~i~~~vlsp~ee~t~~~~----a~~-------------~~~~~fqittt--r~~LN~li~syl 71 (197)
T COG4698 15 FFILLALNTLLAVLIALFVLSPREEPTHLED----ASE-------------KSEKSFQITTT--RSQLNELINSYL 71 (197)
T ss_pred HHHHHHHHHHHHHHhheeeccCCCCCchhhc----cCc-------------ccceeEEEEcc--HHHHHHHHHHHH
Confidence 4456666666667666666777775555333 222 13445555433 245556677777
No 23
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=20.68 E-value=88 Score=26.61 Aligned_cols=28 Identities=11% Similarity=0.136 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17509 3 IIRGIFLFYVIFYSILACLFAICMYVLM 30 (171)
Q Consensus 3 ~w~~I~lFYlifY~~La~~Fa~~m~v~~ 30 (171)
.|+.+..+.+++.+++++-|++.+|+.+
T Consensus 199 ~~g~f~wl~i~~~l~~~~Y~i~g~~~n~ 226 (268)
T PF09451_consen 199 GWGFFTWLFIILFLFLAAYLIFGSWYNY 226 (268)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhheee
Confidence 4555555555566666776777766654
No 24
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=20.57 E-value=1.1e+02 Score=20.96 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCccc
Q psy17509 6 GIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLG 54 (171)
Q Consensus 6 ~I~lFYlifY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig~~PGL~ 54 (171)
+|.+=-+.=|+..+++|...-.+.....-...|+.| ++ ++.+-|.++
T Consensus 4 git~~~~~~~~p~~a~wG~aa~~~v~~f~~~vPr~q-~d-il~KIP~~G 50 (64)
T PF09796_consen 4 GITPKTLTRYGPNLALWGGAAGAAVLFFTSGVPRFQ-RD-ILQKIPVFG 50 (64)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH-HH-HHHhCCccc
Confidence 344445666788888887776666556779999999 43 566778776
No 25
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=20.38 E-value=1.3e+02 Score=22.68 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q psy17509 10 FYVIFYSILACLFAICMYVLMSTLTDEYPKLQ 41 (171)
Q Consensus 10 FYlifY~~La~~Fa~~m~v~~~tl~~~~P~~~ 41 (171)
|+=-|-.+-|+|.|+++.-.+..+--++|||-
T Consensus 11 fFEwFLF~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 11 FFEWFLFFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333333445556666444444556788876
No 26
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=20.37 E-value=2.8e+02 Score=22.91 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=28.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy17509 1 MAIIRGIFLFYVIFYSILACLFAICMYVLMSTLTD 35 (171)
Q Consensus 1 ~~~w~~I~lFYlifY~~La~~Fa~~m~v~~~tl~~ 35 (171)
|..|..-+.+.++|-++++.++-+.++.+=|.+-+
T Consensus 1 ~~~l~~al~~~l~~~vl~G~~YPl~vtgiaq~~Fp 35 (185)
T PRK14000 1 MQTIRKSLGLVLIMFVLCGFIFPLTVTALGQVLFP 35 (185)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66788888889999999999999999988776644
No 27
>PF10968 DUF2770: Protein of unknown function (DUF2770); InterPro: IPR024494 Members in this family of proteins from Enterobacteria are annotated as YceO; however, currently no function is known.
Probab=20.31 E-value=1.2e+02 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q psy17509 8 FLFYVIFYSILACL 21 (171)
Q Consensus 8 ~lFYlifY~~La~~ 21 (171)
+++|+++.+.||++
T Consensus 16 lmlYi~Lw~lL~~~ 29 (36)
T PF10968_consen 16 LMLYICLWLLLAAL 29 (36)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666653
No 28
>PRK11835 hypothetical protein; Provisional
Probab=20.02 E-value=65 Score=24.66 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=24.1
Q ss_pred CCcccccCCCCC--cCCceeEEEec--CCchhHHHHHHHHHHHh
Q psy17509 50 NPGLGFRPMSSD--PEAASLIRYKI--NNTESASMWTKEIDNYL 89 (171)
Q Consensus 50 ~PGL~~~P~~~~--~~~~~~I~y~~--~~~~s~~~yv~~l~~fL 89 (171)
.-|.-..|.+.. +.+..+|-.+- -|-.+--.-.++|.+-|
T Consensus 22 ~~G~kVEpip~~~~~~dn~LigLkLLShdg~~aw~vm~~L~~sL 65 (114)
T PRK11835 22 FAGSKVEPIPQNGADGDNSLIGLKLLSHDGDNAWSVMQKLSQAL 65 (114)
T ss_pred ccCceeeeccCCCCCCccceEEEEeecCCChhHHHHHHHHHHHH
Confidence 467777887653 33446777665 23233344567788888
Done!