Query psy17509
Match_columns 171
No_of_seqs 107 out of 295
Neff 5.6
Searched_HMMs 29240
Date Sat Aug 17 00:24:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_B Potassium-transporting 100.0 2.2E-53 7.5E-58 364.6 15.8 150 2-168 35-195 (290)
2 3kdp_B Sodium/potassium-transp 100.0 7.7E-54 2.6E-58 366.8 11.3 148 2-167 13-174 (286)
3 2zxe_B Na+,K+-ATPase beta subu 100.0 1.8E-51 6.1E-56 354.8 14.1 150 2-169 31-194 (305)
4 1xl4_A Inward rectifier potass 36.2 34 0.0012 28.5 4.1 25 2-26 44-68 (301)
5 3spc_A Inward-rectifier K+ cha 33.2 43 0.0015 28.7 4.3 27 3-29 43-69 (343)
6 3sya_A G protein-activated inw 27.7 60 0.0021 27.7 4.3 27 3-29 41-67 (340)
7 3sjd_D Golgi to ER traffic pro 22.6 8.9 0.00031 23.8 -1.4 7 156-162 40-46 (46)
8 2k9j_B Integrin beta-3; transm 20.2 1E+02 0.0034 18.5 3.1 26 11-36 15-40 (43)
9 1p7b_A Integral membrane chann 18.9 37 0.0013 28.8 1.2 24 2-25 58-81 (333)
10 1fjk_A Cardiac phospholamban; 17.3 92 0.0032 19.4 2.4 20 11-30 32-51 (52)
No 1
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=100.00 E-value=2.2e-53 Score=364.59 Aligned_cols=150 Identities=26% Similarity=0.534 Sum_probs=135.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCcccccCCCCCcCCceeEEEecCCchhHHHH
Q psy17509 2 AIIRGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAASLIRYKINNTESASMW 81 (171)
Q Consensus 2 ~~w~~I~lFYlifY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig~~PGL~~~P~~~~~~~~~~I~y~~~~~~s~~~y 81 (171)
.+|++|+|||||||+|||+|||+||||||+|||+++|+|| ++ +++|||++||++. ++++++|+|+.+|+++|++|
T Consensus 35 ~sW~~IllFYliFY~~LaglFa~~m~v~l~Tld~~~Pkyq-d~---~~~PGL~~~P~~~-~~~~~~I~f~~sd~~s~~~y 109 (290)
T 3ixz_B 35 SRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQ-DQ---LKSPGVTLRPDVY-GEKGLDISYNVSDSTTWAGL 109 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc-cc---cCCCcceecCCCC-CCcceEEEEeCCCchHHHHH
Confidence 5899999999999999999999999999999999999999 54 3799999999986 46789999999999999999
Q ss_pred HHHHHHHhhhccCCCCccccCCCCCCCCCcCCCCCCC---------CCCCCCceeecccCcccCCCC--CCCCccCCCCc
Q psy17509 82 TKEIDNYLEGNLLFPDLEVYKNPQKLPGNQVKCDYDN---------PPPQGKICEIELEKNMGPCTE--AFNYGFTAGKP 150 (171)
Q Consensus 82 v~~l~~fL~~~~~~~~~~~Y~~~~~~~~~~~~C~~~~---------~~~~~~~C~F~~~~~lg~Cs~--~~~yGY~~g~P 150 (171)
+++|++|| ++|++..|. +..+|+.++ +++.+++|+|++++ ||+|++ |++|||++|+|
T Consensus 110 v~~l~~FL---------~~Y~~~~q~--~~~~C~~~~~~~q~~~~~~~~~~~~C~F~~~~-lg~Csg~~d~~fGY~~g~P 177 (290)
T 3ixz_B 110 AHTLHRFL---------AGYSPAAQE--GSINCTSEKYFFQESFLAPNHTKFSCKFTADM-LQNCSGRPDPTFGFAEGKP 177 (290)
T ss_pred HHHHHHHH---------HHhCchhcc--CcccCCCccccccccccCCCCCCceeeccccc-cCcCCCCCCCCCCcCCCCc
Confidence 99999999 999997653 367787653 23456799999999 999996 88999999999
Q ss_pred EEEEEeccccceeccccc
Q psy17509 151 CVFIKLNKENGYSHDYRL 168 (171)
Q Consensus 151 CV~iKLNrI~gw~P~~y~ 168 (171)
|||||||||+||+|+.++
T Consensus 178 CI~iKlNrIig~~P~~~~ 195 (290)
T 3ixz_B 178 CFIIKMNRIVKFLPGNST 195 (290)
T ss_pred eEEEEeceEEeeecCCCC
Confidence 999999999999999765
No 2
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=100.00 E-value=7.7e-54 Score=366.79 Aligned_cols=148 Identities=33% Similarity=0.578 Sum_probs=134.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCcccccCCCCCcCCceeEEEecCCchhHHHH
Q psy17509 2 AIIRGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAASLIRYKINNTESASMW 81 (171)
Q Consensus 2 ~~w~~I~lFYlifY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig~~PGL~~~P~~~~~~~~~~I~y~~~~~~s~~~y 81 (171)
.+|++|+|||||||+|||+|||+||||||+|||+++|+|| |++ ++|||++||++. .++|+|+.+|+++|+.|
T Consensus 13 ~sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~---~~PGL~~~P~~~----~~eI~f~~sd~~s~~~y 84 (286)
T 3kdp_B 13 GSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ-DRV---APPGLTQIPQSQ----KTEISFRPNDPQSYESY 84 (286)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC-TTT---CSCCCCBSSCCS----SSEEECCSSCTTTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc-CCC---CCCcceeccCCC----ceEEEEECCChhhHHHH
Confidence 5899999999999999999999999999999999999999 775 799999999984 47899999999999999
Q ss_pred HHHHHHHhhhccCCCCccccCCCCCCCCC------------cCCCCCCCCCCCCCceeecccCcccCCC--CCCCCccCC
Q psy17509 82 TKEIDNYLEGNLLFPDLEVYKNPQKLPGN------------QVKCDYDNPPPQGKICEIELEKNMGPCT--EAFNYGFTA 147 (171)
Q Consensus 82 v~~l~~fL~~~~~~~~~~~Y~~~~~~~~~------------~~~C~~~~~~~~~~~C~F~~~~~lg~Cs--~~~~yGY~~ 147 (171)
+++|++|| ++|++..|...+ ...|+.+++++++++|+|++++ ||+|+ ++++|||++
T Consensus 85 v~~L~~FL---------~~Y~~~~q~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~C~F~~~~-lg~Csg~~d~~fGY~~ 154 (286)
T 3kdp_B 85 VVSIVRFL---------EKYKDLAQKDDMIFEDCGNVPSELKERGEYNNERGERKVCRSRLEW-LGNCSGLNDETYGYKD 154 (286)
T ss_dssp HHHHHHHH---------TTCCTTTSCSTTTEECCCSSCCCCCCCCCSSSSSSSCCEECCCGGG-STTSCCCCSSSCCCCS
T ss_pred HHHHHHHH---------HHhcchhhcccccccccccCcccceeccccccCCCCCceeEecccc-ccCCCCCCCCCCCcCC
Confidence 99999999 999987653222 3455666667889999999999 99999 899999999
Q ss_pred CCcEEEEEeccccceecccc
Q psy17509 148 GKPCVFIKLNKENGYSHDYR 167 (171)
Q Consensus 148 g~PCV~iKLNrI~gw~P~~y 167 (171)
|+||||||||||+||+|+.|
T Consensus 155 g~PCI~lKlNRIig~~P~~~ 174 (286)
T 3kdp_B 155 GKPCVIIKLNRVLGFKPKPP 174 (286)
T ss_dssp SSCCBCBCCCCCBTCCCCCC
T ss_pred CCCeEEEEeccccceeeccc
Confidence 99999999999999999986
No 3
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=100.00 E-value=1.8e-51 Score=354.78 Aligned_cols=150 Identities=31% Similarity=0.547 Sum_probs=130.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCcccccCCCCCcCCceeEEEecCCchhHHHH
Q psy17509 2 AIIRGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAASLIRYKINNTESASMW 81 (171)
Q Consensus 2 ~~w~~I~lFYlifY~~La~~Fa~~m~v~~~tl~~~~P~~~~~~s~ig~~PGL~~~P~~~~~~~~~~I~y~~~~~~s~~~y 81 (171)
.+|++|+|||+|||+|||+|||+||||||+|||+++|+|| ++ | ++|||++||++ ++++|+|+++++++|++|
T Consensus 31 ~sW~~IllFYliFY~~La~lF~~~m~v~l~tl~~~~Pk~q-~~--i-~~PGL~~~P~~----~~~~I~f~~~~~~s~~~y 102 (305)
T 2zxe_B 31 SSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQ-DR--V-APPGLSHAPYA----IKTEISFSISNPKSYESF 102 (305)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCSCC-TT--T-CSCCBCCSSCC----SSSEEEECTTCGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccc-cC--C-CCCeeeEecCC----CCeEEEEeCCChhhHHHH
Confidence 5899999999999999999999999999999999999999 44 3 79999999997 469999999999999999
Q ss_pred HHHHHHHhhhccCCCCccccCCCCCCCC-CcCCCCC-----------CCCCCCCCceeecccCcccCCCC--CCCCccCC
Q psy17509 82 TKEIDNYLEGNLLFPDLEVYKNPQKLPG-NQVKCDY-----------DNPPPQGKICEIELEKNMGPCTE--AFNYGFTA 147 (171)
Q Consensus 82 v~~l~~fL~~~~~~~~~~~Y~~~~~~~~-~~~~C~~-----------~~~~~~~~~C~F~~~~~lg~Cs~--~~~yGY~~ 147 (171)
+++|++|| ++|+++.|..+ ..++|+. .+.++++++|+|++++ ||+|++ +++|||++
T Consensus 103 v~~l~~FL---------~~Y~~~~q~~~~~~~~C~~~~~~~~~~g~~~~~~~~~~~C~F~~~~-Lg~Cs~~~d~~fGY~~ 172 (305)
T 2zxe_B 103 VKSMHKLM---------DLYNESSQAGNSPFEDCSDTPADYIKRGDLDDSQGQKKACRFSRMW-LKNCSGLDDTTYGYAE 172 (305)
T ss_dssp HHHHHHHH---------GGGCGGGSCSTTTEECCCSSCCCCCCCSSSCSSSSSCCEECCCGGG-STTC--------CCCS
T ss_pred HHHHHHHH---------HHhcchhhccccccccCCCcccccccccccccCCCCCceeEeechh-ccCCCCCCCCCCCcCC
Confidence 99999999 99999866432 2889984 3445678999999999 999996 44599999
Q ss_pred CCcEEEEEeccccceecccccC
Q psy17509 148 GKPCVFIKLNKENGYSHDYRLV 169 (171)
Q Consensus 148 g~PCV~iKLNrI~gw~P~~y~~ 169 (171)
|+||||||||||+||+|++|++
T Consensus 173 g~PCI~lKlNrI~g~~P~~~~~ 194 (305)
T 2zxe_B 173 GKPCVVAKLNRIIGFYPKPLKN 194 (305)
T ss_dssp SSCCCEEEBCCCBTCCCCCCCT
T ss_pred CCCeEEEEecceecccccCCcc
Confidence 9999999999999999998764
No 4
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=36.25 E-value=34 Score=28.45 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q psy17509 2 AIIRGIFLFYVIFYSILACLFAICM 26 (171)
Q Consensus 2 ~~w~~I~lFYlifY~~La~~Fa~~m 26 (171)
..|.+++++.++.|.++..+||+..
T Consensus 44 ~~~~~ll~~~~~~~~~~~l~fa~ly 68 (301)
T 1xl4_A 44 VSWPVFITLITGLYLVTNALFALAY 68 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999888888773
No 5
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=33.15 E-value=43 Score=28.68 Aligned_cols=27 Identities=15% Similarity=0.421 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17509 3 IIRGIFLFYVIFYSILACLFAICMYVL 29 (171)
Q Consensus 3 ~w~~I~lFYlifY~~La~~Fa~~m~v~ 29 (171)
.|..+++.+++.|+++-.+||+..|++
T Consensus 43 ~Wr~~ll~f~~~y~~swl~Fally~~i 69 (343)
T 3spc_A 43 RWRYMLLLFSLAFLVSWLLFGLIFWLI 69 (343)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999888774
No 6
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=27.75 E-value=60 Score=27.71 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17509 3 IIRGIFLFYVIFYSILACLFAICMYVL 29 (171)
Q Consensus 3 ~w~~I~lFYlifY~~La~~Fa~~m~v~ 29 (171)
.|..+++..++.|.+.-.+||+..|++
T Consensus 41 ~Wr~~llif~~~y~~swl~Fa~ly~~i 67 (340)
T 3sya_A 41 KWRFNLLIFVMVYTVTWLFFGMIWWLI 67 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999888776
No 7
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=22.63 E-value=8.9 Score=23.84 Aligned_cols=7 Identities=57% Similarity=0.928 Sum_probs=2.8
Q ss_pred eccccce
Q psy17509 156 LNKENGY 162 (171)
Q Consensus 156 LNrI~gw 162 (171)
||+|.||
T Consensus 40 LNkItg~ 46 (46)
T 3sjd_D 40 LNKITGW 46 (46)
T ss_dssp HHHHC--
T ss_pred HHHHhcC
Confidence 5555555
No 8
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=20.20 E-value=1e+02 Score=18.47 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy17509 11 YVIFYSILACLFAICMYVLMSTLTDE 36 (171)
Q Consensus 11 YlifY~~La~~Fa~~m~v~~~tl~~~ 36 (171)
.++-=.+|.|+..+++|-++.++.|.
T Consensus 15 gvi~~ivliGl~lLliwk~~~~i~Dr 40 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWKLLITIHDR 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHheehh
Confidence 45555777888889999888877653
No 9
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=18.93 E-value=37 Score=28.83 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q psy17509 2 AIIRGIFLFYVIFYSILACLFAIC 25 (171)
Q Consensus 2 ~~w~~I~lFYlifY~~La~~Fa~~ 25 (171)
..|.++++++++.|+++..+|++.
T Consensus 58 ~~~~~ll~~~~~~~l~~~l~fall 81 (333)
T 1p7b_A 58 VSWPVFFASLAALFVVNNTLFALL 81 (333)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999888888887777765
No 10
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=17.28 E-value=92 Score=19.37 Aligned_cols=20 Identities=35% Similarity=0.788 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17509 11 YVIFYSILACLFAICMYVLM 30 (171)
Q Consensus 11 YlifY~~La~~Fa~~m~v~~ 30 (171)
++=|-.+|.++..+|+.||+
T Consensus 32 fvnfclilicllli~iivml 51 (52)
T 1fjk_A 32 FINFCLILIFLLLICIIVML 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566677777788887764
Done!