Query psy17509
Match_columns 171
No_of_seqs 107 out of 295
Neff 5.6
Searched_HMMs 13730
Date Sat Aug 17 00:24:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17509.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17509hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 54.5 6.3 0.00046 20.7 2.9 17 9-25 4-20 (30)
2 d1xl4a2 f.14.1.1 (A:23-138) In 22.4 49 0.0036 21.3 4.1 24 3-26 23-46 (116)
3 d2ge7a1 d.254.1.2 (A:8-114) Co 21.9 53 0.0039 22.0 4.2 27 64-90 69-100 (107)
4 d1l6ja3 g.14.1.2 (A:216-274) G 13.4 18 0.0013 21.9 -0.1 11 143-153 7-17 (59)
5 d1p7ba2 f.14.1.1 (A:36-151) In 13.0 69 0.005 20.5 2.9 23 3-25 24-46 (116)
6 d1eaka3 g.14.1.2 (A:217-277) G 12.9 17 0.0012 22.2 -0.4 11 143-153 9-19 (61)
7 d1e8ra_ g.29.1.1 (A:) Endo-1;4 12.9 24 0.0017 20.8 0.4 16 137-152 16-32 (50)
8 d1eaka5 g.14.1.2 (A:336-393) G 11.0 22 0.0016 21.4 -0.3 9 145-153 8-16 (58)
9 d1u5da1 b.55.1.1 (A:108-213) S 10.5 91 0.0066 18.5 2.8 24 66-89 79-102 (106)
10 d2fiua1 d.58.4.16 (A:1-95) Hyp 10.5 98 0.0072 19.2 3.0 29 67-104 7-35 (95)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=54.54 E-value=6.3 Score=20.71 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17509 9 LFYVIFYSILACLFAIC 25 (171)
Q Consensus 9 lFYlifY~~La~~Fa~~ 25 (171)
+-|+..++||.++|...
T Consensus 4 i~yv~ifac~i~lfffa 20 (30)
T d2axtt1 4 ITYVFIFACIIALFFFA 20 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHH
Confidence 34666677777776544
No 2
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=22.38 E-value=49 Score=21.25 Aligned_cols=24 Identities=17% Similarity=0.222 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy17509 3 IIRGIFLFYVIFYSILACLFAICM 26 (171)
Q Consensus 3 ~w~~I~lFYlifY~~La~~Fa~~m 26 (171)
.|...++..++.|.++..+|++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~fa~~y 46 (116)
T d1xl4a2 23 SWPVFITLITGLYLVTNALFALAY 46 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777888887777776544
No 3
>d2ge7a1 d.254.1.2 (A:8-114) Coronavirus nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=21.88 E-value=53 Score=22.05 Aligned_cols=27 Identities=7% Similarity=0.250 Sum_probs=19.9
Q ss_pred CceeEEEec-----CCchhHHHHHHHHHHHhh
Q psy17509 64 AASLIRYKI-----NNTESASMWTKEIDNYLE 90 (171)
Q Consensus 64 ~~~~I~y~~-----~~~~s~~~yv~~l~~fL~ 90 (171)
++.+|.|+- .+...++.|++.+++.|.
T Consensus 69 d~~~lty~~~~~vpk~dP~~~~~~k~l~~~~d 100 (107)
T d2ge7a1 69 DGLHLKFEFTTVVPRDDPQFDNYVKICDQCVD 100 (107)
T ss_dssp TEEEEEEEEEEEEETTSTTHHHHHHHHHHHBT
T ss_pred CcEEEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Confidence 345666654 345789999999999993
No 4
>d1l6ja3 g.14.1.2 (A:216-274) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.42 E-value=18 Score=21.85 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.6
Q ss_pred CccCCCCcEEE
Q psy17509 143 YGFTAGKPCVF 153 (171)
Q Consensus 143 yGY~~g~PCV~ 153 (171)
.|=+.|+||||
T Consensus 7 ~Gns~G~~C~F 17 (59)
T d1l6ja3 7 FGNADGAACHF 17 (59)
T ss_dssp SSSSTTCBCCS
T ss_pred cCcCCCCceEC
Confidence 56677899986
No 5
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=13.03 E-value=69 Score=20.53 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy17509 3 IIRGIFLFYVIFYSILACLFAIC 25 (171)
Q Consensus 3 ~w~~I~lFYlifY~~La~~Fa~~ 25 (171)
.|.++++..++.|.++..+|++.
T Consensus 24 ~~~~~l~~~~~~~~~~~~~fa~~ 46 (116)
T d1p7ba2 24 SWPVFFASLAALFVVNNTLFALL 46 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777654
No 6
>d1eaka3 g.14.1.2 (A:217-277) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.93 E-value=17 Score=22.18 Aligned_cols=11 Identities=45% Similarity=1.002 Sum_probs=8.7
Q ss_pred CccCCCCcEEE
Q psy17509 143 YGFTAGKPCVF 153 (171)
Q Consensus 143 yGY~~g~PCV~ 153 (171)
+|=+.|+||||
T Consensus 9 ~GNs~G~~C~F 19 (61)
T d1eaka3 9 YGNADGEYCKF 19 (61)
T ss_dssp SGGGTTSBCCS
T ss_pred cccCCCCceEC
Confidence 56678899986
No 7
>d1e8ra_ g.29.1.1 (A:) Endo-1;4-beta-xylanase A CBDX {Pseudomonas fluorescens, subsp. cellulosa [TaxId: 294]}
Probab=12.90 E-value=24 Score=20.77 Aligned_cols=16 Identities=19% Similarity=0.831 Sum_probs=13.5
Q ss_pred CCC-CCCCccCCCCcEE
Q psy17509 137 CTE-AFNYGFTAGKPCV 152 (171)
Q Consensus 137 Cs~-~~~yGY~~g~PCV 152 (171)
|.. +..||+..++-||
T Consensus 16 C~n~~sGWGwEN~qSCI 32 (50)
T d1e8ra_ 16 CVTTTNGWGWEDQRSCI 32 (50)
T ss_dssp CSTTCSSEEEETTEEEE
T ss_pred eccCCCccccccCCcee
Confidence 874 5669999999998
No 8
>d1eaka5 g.14.1.2 (A:336-393) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.96 E-value=22 Score=21.37 Aligned_cols=9 Identities=56% Similarity=1.261 Sum_probs=6.7
Q ss_pred cCCCCcEEE
Q psy17509 145 FTAGKPCVF 153 (171)
Q Consensus 145 Y~~g~PCV~ 153 (171)
=+.|+||||
T Consensus 8 ns~G~~C~F 16 (58)
T d1eaka5 8 NSEGAPCVF 16 (58)
T ss_dssp TTTTCCCCS
T ss_pred CCCCCccCC
Confidence 347889986
No 9
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.53 E-value=91 Score=18.52 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.3
Q ss_pred eeEEEecCCchhHHHHHHHHHHHh
Q psy17509 66 SLIRYKINNTESASMWTKEIDNYL 89 (171)
Q Consensus 66 ~~I~y~~~~~~s~~~yv~~l~~fL 89 (171)
..+.+.+.+..+...|++.|+..+
T Consensus 79 ~~~~f~a~s~~e~~~W~~ai~~~i 102 (106)
T d1u5da1 79 RTYEFTATSPAEARDWVDQISFLL 102 (106)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHH
Confidence 457788999999999999999988
No 10
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.49 E-value=98 Score=19.22 Aligned_cols=29 Identities=7% Similarity=0.179 Sum_probs=24.9
Q ss_pred eEEEecCCchhHHHHHHHHHHHhhhccCCCCccccCCC
Q psy17509 67 LIRYKINNTESASMWTKEIDNYLEGNLLFPDLEVYKNP 104 (171)
Q Consensus 67 ~I~y~~~~~~s~~~yv~~l~~fL~~~~~~~~~~~Y~~~ 104 (171)
++..+..|++.|+.|.+.....| ++|+-.
T Consensus 7 i~~~~i~d~e~~~~Y~~~~~~~~---------~~~GG~ 35 (95)
T d2fiua1 7 IAQVDVRDSERYKDYVSTAKPAF---------ERFGAN 35 (95)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH---------HHTTCE
T ss_pred EEEEEECCHHHHHHHHHHHHHHH---------HHcCCE
Confidence 45567889999999999999999 888864
Done!