RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17509
(171 letters)
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical,
heterotrimeric membrane protein complex, ATP- hydrolase,
ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa}
PDB: 3n2f_B* 3n23_B*
Length = 286
Score = 114 bits (286), Expect = 1e-31
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 14/161 (8%)
Query: 7 IFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAAS 66
I LFYVIFY LA +F + V++ T+++ P Q + PGL P S E
Sbjct: 18 ILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVA----PPGLTQIPQSQKTE--- 70
Query: 67 LIRYKINNTESASMWTKEIDNYLE--GNLLFPDLEVYKNPQKLPG-NQVKCDYDNPPPQG 123
I ++ N+ +S + I +LE +L D ++++ +P + + +Y+N +
Sbjct: 71 -ISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVPSELKERGEYNNERGER 129
Query: 124 KICEIELEKNMGPCT--EAFNYGFTAGKPCVFIKLNKENGY 162
K+C LE +G C+ YG+ GKPCV IKLN+ G+
Sbjct: 130 KVCRSRLE-WLGNCSGLNDETYGYKDGKPCVIIKLNRVLGF 169
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_B* 3b8e_B*
Length = 305
Score = 113 bits (283), Expect = 3e-31
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 7 IFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAAS 66
IFLFY+IFY LA +F + VL+ TL+D PK Q + PGL P + E
Sbjct: 36 IFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQDRVA----PPGLSHAPYAIKTE--- 88
Query: 67 LIRYKINNTESASMWTKEIDNYLE--GNLLFPDLEVYKNPQKLPG-NQVKCDYDNPPPQG 123
I + I+N +S + K + ++ +++ P + D D+ Q
Sbjct: 89 -ISFSISNPKSYESFVKSMHKLMDLYNESSQAGNSPFEDCSDTPADYIKRGDLDDSQGQK 147
Query: 124 KICEIELEKNMGPCT--EAFNYGFTAGKPCVFIKLNKENGY 162
K C + C+ + YG+ GKPCV KLN+ G+
Sbjct: 148 KACRFSRM-WLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGF 187
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB:
2xzb_B
Length = 290
Score = 111 bits (279), Expect = 1e-30
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 7 IFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPGLGFRPMSSDPEAAS 66
I L+YV FY +++ +FA+C+YVLM T+ P Q +PG+ RP +
Sbjct: 40 ISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQLK----SPGVTLRPDVYGEK-GL 94
Query: 67 LIRYKINNTESASMWTKEIDNYLEGNLLFPDLEVYKNPQKLPGNQVKCDYDNPPPQGKIC 126
I Y ++++ + + + +L G P + + + P C
Sbjct: 95 DISYNVSDSTTWAGLAHTLHRFLAGYS--PAAQEGSINCTSEKYFFQESFLAPNHTKFSC 152
Query: 127 EIELEKNMGPCT--EAFNYGFTAGKPCVFIKLNKENGY 162
+ + + C+ +GF GKPC IK+N+ +
Sbjct: 153 KFTAD-MLQNCSGRPDPTFGFAEGKPCFIIKMNRIVKF 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 1e-04
Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 45/135 (33%)
Query: 1 MAIIR-----GIFLFYVIF-------YSILACL-----FAICMYVLM---STLTDEYPKL 40
A G+ F Y+ LA L + V+ T+ P+
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 41 QLDES---IIGVNPGLGFRPMSSDPEAASLIRYKINNTESASMWTKEIDNYLEGNLLFPD 97
+L S +I +NPG R +S + A ++Y + + W EI NY N
Sbjct: 1801 ELGRSNYGMIAINPG---RVAASFSQEA--LQYVVERVGKRTGWLVEIVNY---N----- 1847
Query: 98 LEVYKNPQKLPGNQV 112
+ Q
Sbjct: 1848 ---------VENQQY 1853
Score = 33.1 bits (75), Expect = 0.044
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 70 YKINNTESA-SMWTKEIDNYLEGNLLFPDLE-VYKNPQKLPGNQVKCDYDNPPPQGKICE 127
Y +++A +W DN+ + F L+ V NP L +GK
Sbjct: 1636 Y--KTSKAAQDVW-NRADNHFKDTYGFSILDIVINNPVNL-------TIHFGGEKGK--- 1682
Query: 128 IELEKN-MGPCTEAFNYGFTAGKPCVFIKLNKE 159
+ +N E G + +F ++N+
Sbjct: 1683 -RIRENYSAMIFETIVDGKLKTEK-IFKEINEH 1713
Score = 31.6 bits (71), Expect = 0.15
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 18/74 (24%)
Query: 10 FYVIFYSILACLFAI---CMYVLMSTLTDEYPKLQLDESIIG--VNPGLGF-RPMSS--D 61
F+V + LF I C + YP L SI+ + G PM S +
Sbjct: 292 FFVSVRKAITVLFFIGVRC--------YEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 62 PEAASLIRY--KIN 73
+ Y K N
Sbjct: 344 LTQEQVQDYVNKTN 357
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 26.7 bits (58), Expect = 4.3
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 55 FRPMSSDPEAASLIRYKINNTESASMWTKEIDNY 88
S+ +A +I WT + + +
Sbjct: 914 LTVGKSEEDAKKYFLDQIEVCRD-KGWTVQFNWF 946
>2x7r_B Transmembrane protein GP41; envelope glycoprotein, membrane
anchored fusion protein, viral protein; 2.00A {Human
immunodeficiency virus type 1LW12}
Length = 63
Score = 24.8 bits (54), Expect = 4.6
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 81 WTKEIDNYLEGNLLFPDLEVYKNPQ 105
W +EI+NY +L+ +E +N Q
Sbjct: 11 WDREINNYT--SLIHSLIEESQNQQ 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.435
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,673,767
Number of extensions: 148649
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 10
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)