BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17510
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 235 bits (599), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 431
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 432 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 234 bits (596), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 234 bits (596), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 233 bits (594), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 50 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 110 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 231 bits (590), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 110/112 (98%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGG DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 231 bits (588), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/111 (97%), Positives = 110/111 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 50 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+
Sbjct: 110 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 160
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 231 bits (588), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 110/112 (98%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGG DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 53 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 112
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 113 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 164
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 230 bits (587), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 110/112 (98%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGG DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 52 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 111
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 112 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 163
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 227 bits (579), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 109/112 (97%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE RDAIILIFAN
Sbjct: 50 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDA KPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 110 KQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 173 bits (438), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 92/109 (84%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYY+ T GLIFVVD DR+RID+AR+ELHR+IN+ E++DAIIL+FAN
Sbjct: 67 DVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQDLP+AM E+ EKL L IR+RNW++Q +CAT DGLYEG WLT+
Sbjct: 127 KQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTT 175
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 93/110 (84%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 70 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 129
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDLP+AM EI +KLGL +R R+WY+Q +CAT+ +GLYEGL WL++N
Sbjct: 130 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 179
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 92/109 (84%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++
Sbjct: 127 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 175
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 92/109 (84%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 66 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++
Sbjct: 126 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 174
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 166 bits (419), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 92/109 (84%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++
Sbjct: 110 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 165 bits (417), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 92/109 (84%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 274
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++
Sbjct: 275 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 323
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 164 bits (416), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 87/112 (77%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYY TQ +IFVVD DRDRI EAR+EL +++N+ EMR+AI+L+FAN
Sbjct: 67 DVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
K DLP AM E+ EKLGL I++R WY Q SCAT DGLYEGL WL N K
Sbjct: 127 KHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 91/109 (83%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGG DKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 52 DVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 111
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++
Sbjct: 112 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 160
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 158 bits (399), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 90/112 (80%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQD+IR LWRHYY T+G+IFV+D DR RI EAR+ + R++N+ E+R+A+ L+FAN
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP+AM EI EKLGL IR+R W++Q +CAT+ +GLYEGL WL++N K
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLK 178
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 155 bits (391), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 89/112 (79%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQD+IR LWRHYY T+G+IFVVD DR RI EAR+ + R++N+ E+R+A L+FAN
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP+AM EI EKLGL IR+R W++Q +CAT+ +GLYEGL WL+++ K
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 178
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 89/112 (79%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQD+IR LWRHYY T+G+IFVVD DR RI EAR+ + R++N+ E+R+A L+FAN
Sbjct: 50 DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP+AM EI EKLGL IR+R W++Q +CAT+ +GLYEGL WL+++ K
Sbjct: 110 KQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 161
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 151 bits (381), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 85/108 (78%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R+ E+ EL +++ + E+RDA++L+FAN
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
KQD+P+AM E+ +KLGL +R R WYVQ +CAT GLY+GL WL+
Sbjct: 139 KQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLS 186
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 87/112 (77%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQD+IR LWRHYY T+G+IFVVD DR RI EAR+ + R++N+ E+ +A L+FAN
Sbjct: 67 DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP+AM EI EKLGL IR+R W++Q +CAT+ +GLYEGL WL++ K
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLK 178
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 85/109 (77%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQD+IRPLW+HY+ TQGLIFVVD DR+RI E EL +++ E+RDA++L+FAN
Sbjct: 67 DVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQDLP+AM E+ +KLGL +R+R WYVQ +CAT GLYEGL WL++
Sbjct: 127 KQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN 175
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 76/108 (70%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ +RP WR Y++ T +I+VVD DRDR+ A+ EL+ ++++ E+R +++LIFAN
Sbjct: 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFAN 131
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
KQDLPDA EI E+LG++ I +R W + S + T DGL EG+ WL
Sbjct: 132 KQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ IRP WR YY T +IFVVD D+DR+ A +ELH ++ + E++DA +L+FAN
Sbjct: 68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
KQD P A+ E+ ++L L ++DR+W + S A +G+ EGL WL
Sbjct: 128 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 75/113 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S K+
Sbjct: 126 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 75/113 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S K+
Sbjct: 126 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 71/112 (63%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ IRP WR YY+ T +I+VVD DRDRI ++ EL ++ + E+R AI+++FAN
Sbjct: 52 DLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 111
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD+ AM P E+ LGL ++DR W + + AT GL E + WL K
Sbjct: 112 KQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 163
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 72 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 131
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S K
Sbjct: 132 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 183
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 73/109 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 71 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 130
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S
Sbjct: 131 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 73/109 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YY+ T+ +I VVD DR+R+ ++EL+R++ ++R A +LIFAN
Sbjct: 66 DIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQD+ M EI + L L+ I+D W++Q CA T +GL +GL W+TS
Sbjct: 126 KQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTS 174
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 69/112 (61%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG IRP WR YY+ T +I+VVD DRDRI ++ EL ++ + E+R AI+++FAN
Sbjct: 54 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 113
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD+ AM E+ LGL ++DR W + + AT GL E + WL K
Sbjct: 114 KQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 68/107 (63%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ +R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFAN
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
KQDLP A+ + IQE L L IR +W +Q A T + L G+ WL
Sbjct: 128 KQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 68/107 (63%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ +R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFAN
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
KQDLP A+ + IQE L L IR +W +Q A T + L G+ WL
Sbjct: 128 KQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 67/107 (62%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ +R WR+Y+ T GLI+VVD ADR R + ++EL ++ + + A +LIFAN
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFAN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
KQDLP A+ + IQE L L IR +W +Q A T + L G+ WL
Sbjct: 128 KQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ +R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFAN
Sbjct: 66 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
KQDLP A+ + I+E L L IR +W +Q A T + L G+ WL
Sbjct: 126 KQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWL 172
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGG +R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFAN
Sbjct: 51 DVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 110
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
KQDLP A+ + IQE L L IR +W +Q A T + L G+ WL
Sbjct: 111 KQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 157
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 68/110 (61%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ KIRP WR Y+ T LI+V+D ADR R +E QEL ++ + ++ +LIFAN
Sbjct: 67 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDL A EI E L L IRDR W +Q A T +G+ +G+ W+ N
Sbjct: 127 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 176
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 68/110 (61%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ KIRP WR Y+ T LI+V+D ADR R +E QEL ++ + ++ +LIFAN
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDL A EI E L L IRDR W +Q A T +G+ +G+ W+ N
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 68/110 (61%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ KIRP WR Y+ T LI+V+D ADR R +E QEL ++ + ++ +LIFAN
Sbjct: 54 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 113
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDL A EI E L L IRDR W +Q A T +G+ +G+ W+ N
Sbjct: 114 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 67/110 (60%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG KIRP WR Y+ T LI+V+D ADR R +E QEL ++ + ++ +LIFAN
Sbjct: 54 DIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 113
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDL A EI E L L IRDR W +Q A T +G+ +G+ W+ N
Sbjct: 114 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 64/112 (57%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG IRP WR YY+ T +I+VVD DRDRI ++ EL + + E+R AI+++FAN
Sbjct: 57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFAN 116
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD A E LGL ++DR W + + AT GL E WL K
Sbjct: 117 KQDXEQAXTSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLK 168
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN--DREMRDAIILIF 58
D+ GQ + R LW HYY Q +IFV+D +DR R+ A++EL ++N D + R IL F
Sbjct: 73 DMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132
Query: 59 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
ANK DL DA+ ++ + L L I+D+ W++ S A +GL EG+ WL
Sbjct: 133 ANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 65/112 (58%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ + R +W Y G +++++D ADR++I+ +R ELH +++ +++ +L+ N
Sbjct: 73 DIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGN 132
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
K+DLP+A+ ++ EK+ L+ I+DR D + L WL + K
Sbjct: 133 KRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ + R +W Y G ++++VD AD+++I+ ++ ELH +++ +++ +L+ N
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
K+DLP A+ E+ EK+ L+ I+DR D + L WL + K
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ + R +W Y G ++++VD AD+++I+ ++ ELH +++ +++ +L+ N
Sbjct: 82 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 141
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
K+DLP A+ E+ EK+ L+ I+DR D + L WL + K
Sbjct: 142 KRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 193
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R LW+ Y+ G++F+VD AD +R DEAR EL + N E++D +I N
Sbjct: 51 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 110
Query: 61 KQDLPDAMKPHEIQEKLGLT------RIRDRNWYVQPSCATTA-DGLYEGLTWLT 108
K D P+A+ E++ LGL RI + C+ +G E WL+
Sbjct: 111 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R LW+ Y+ G++F+VD AD +R DEAR EL + N E++D +I N
Sbjct: 73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 132
Query: 61 KQDLPDAMKPHEIQEKLGLT------RIRDRNWYVQPSCATTA-DGLYEGLTWLT 108
K D P+A+ E++ LGL RI + C+ +G E WL+
Sbjct: 133 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R +W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI N
Sbjct: 72 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 131
Query: 61 KQDLPDAMKPHEIQEKLGL 79
K D P+A+ ++E GL
Sbjct: 132 KIDRPEAISEERLREMFGL 150
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R +W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI N
Sbjct: 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 134
Query: 61 KQDLPDAMKPHEIQEKLGL 79
K D P+A+ ++E GL
Sbjct: 135 KIDRPEAISEERLREMFGL 153
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R +W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI N
Sbjct: 66 DLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 125
Query: 61 KQDLPDAMKPHEIQEKLGL 79
K D P+A+ ++E GL
Sbjct: 126 KIDRPEAISEERLREMFGL 144
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG ++ R +W++Y G++F+VDCAD R+ E++ EL+ ++ D + + ILI N
Sbjct: 85 DLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGN 144
Query: 61 KQDLPDAMKPHEIQEKLGL 79
K D DA+ +++E GL
Sbjct: 145 KIDRTDAISEEKLREIFGL 163
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI------ 54
D+GG K R LW YY +IFVVD +D R+ + E+ ++ ++R +
Sbjct: 69 DMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRV 128
Query: 55 -ILIFANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATTADGLYEGLTWL 107
L FANK D A E+ E L LT + D + + S G++EG +WL
Sbjct: 129 PFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWL 183
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 206 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 265
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 266 TDTSIILFLNKKDL 279
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 202 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 261
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 262 TDTSIILFLNKKDL 275
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 200 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 259
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 260 TDTSIILFLNKKDL 273
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 174 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 233
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 234 TDTSIILFLNKKDL 247
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 259 TDTSIILFLNKKDL 272
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 168 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 227
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 228 TDTSIILFLNKKDL 241
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 173 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 232
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 233 TDTSIILFLNKKDL 246
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 170 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 229
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 230 TDTSIILFLNKKDL 243
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 259 TDTSIILFLNKKDL 272
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 259 TDTSIILFLNKKDL 272
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 169 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 228
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 229 TDTSIILFLNKKDL 242
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 169 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 228
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 229 TDTSIILFLNKKDL 242
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 171 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 230
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 231 TDTSIILFLNKKDL 244
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 174 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 233
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 234 TDTSIILFLNKKDL 247
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 171 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 230
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 231 TDTSIILFLNKKDL 244
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 176 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 235
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 236 TDTSIILFLNKKDL 249
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 202 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLFNSICNNKWF 261
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 262 TDTSIILFLNKKDL 275
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 171 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 230
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 231 TDTSIILFLNKKDL 244
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 175 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 234
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 235 TDTSIILFLNKKDL 248
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFA 59
D GQ++ R + YY G G+I V D DRD D +Q + I DR M + L+
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI--DRYAMENVNKLLVG 121
Query: 60 NKQDL 64
NK DL
Sbjct: 122 NKCDL 126
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI------ 54
DVGGQ R W H + G +IF V +D D + +E++R+ ++ D+I
Sbjct: 169 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 228
Query: 55 ----ILIFANKQDL 64
I++F NK+DL
Sbjct: 229 TETSIILFLNKKDL 242
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI------ 54
DVGGQ R W H + G +IF V +D D + +E++R+ ++ D+I
Sbjct: 176 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 235
Query: 55 ----ILIFANKQDL 64
I++F NK+DL
Sbjct: 236 TETSIILFLNKKDL 249
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI------ 54
DVGGQ R W H + G +IF V +D D + +E++R+ ++ D+I
Sbjct: 176 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 235
Query: 55 ----ILIFANKQDL 64
I++F NK+DL
Sbjct: 236 TETSIILFLNKKDL 249
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + G +IF V +D D R E+ + I N++
Sbjct: 196 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLFDSICNNKWF 255
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 256 TDTSIILFLNKKDL 269
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGGQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258
Query: 51 RDAIILIFANKQDL 64
+ I++F NK+DL
Sbjct: 259 TETSIILFLNKKDL 272
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DV GQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 200 DVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 259
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 260 TDTSIILFLNKKDL 273
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVG Q R W H + G +IF V +D D + +E++R I N++
Sbjct: 199 DVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 259 TDTSIILFLNKKDL 272
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DVGG R W H + G +IF V +D D + +E++R I N++
Sbjct: 199 DVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 259 TDTSIILFLNKKDL 272
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----------IINDREM 50
DV GQ R W H + G +IF V +D D + +E++R I N++
Sbjct: 200 DVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKCF 259
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 260 TDTSIILFLNKKDL 273
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W + G +IF V +D D R+ E+ + I N++
Sbjct: 186 DVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKWF 245
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 246 TDTSIILFLNKKDL 259
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 145
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
NK DL D E + LG+
Sbjct: 146 NKCDLTTKKVVDYTTAKEFADSLGI 170
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 54 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 111
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
NK DL D E + LG+
Sbjct: 112 NKCDLTTKKVVDYTTAKEFADSLGI 136
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFA 59
D GQ++ R + YY G+ G+I V D D++ + + L I DR ++ L+
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVG 120
Query: 60 NKQDLPD 66
NK DL D
Sbjct: 121 NKCDLKD 127
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 128
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
NK DL D E + LG+
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGI 153
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFA 59
D GQ++ R + YY G+ G+I V D D++ + + L I DR ++ L+
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVG 120
Query: 60 NKQDLPD 66
NK DL D
Sbjct: 121 NKCDLKD 127
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 128
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
NK DL D E + LG+
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGI 153
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 118
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
NK DL D E + LG+
Sbjct: 119 NKCDLTTKKVVDYTTAKEFADSLGI 143
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 118
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
NK DL D E + LG+
Sbjct: 119 NKCDLTTKKVVDYTTAKEFADSLGI 143
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 80 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 137
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
NK DL D E + LG+
Sbjct: 138 NKCDLTTKKVVDYTTAKEFADSLGI 162
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFA 59
D GQ++ R + YY G+ G+I V D D++ + + L I DR ++ L+
Sbjct: 76 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVG 133
Query: 60 NKQDLPD 66
NK DL D
Sbjct: 134 NKCDLKD 140
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDA 53
D GQ+ R + R YY G G + V D RD +++ARQ + +
Sbjct: 65 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN--------SNM 116
Query: 54 IILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGL 104
+I++ NK DL E++++ G R+ + A TA + E
Sbjct: 117 VIMLIGNKSDLES---RREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ +Q L I DR + + L+
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVG 121
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
NK DL D E + LG+
Sbjct: 122 NKSDLTTKKVVDNTTAKEFADSLGI 146
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ +Q L I DR + + L+
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVG 121
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
NK DL D E + LG+
Sbjct: 122 NKSDLTTKKVVDNTTAKEFADSLGI 146
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI---DEARQELHR-------IINDREM 50
DVGGQ R W H + +IF V + D++ DE +H I N++
Sbjct: 180 DVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFF 239
Query: 51 RDAIILIFANKQDL 64
D I++F NK+DL
Sbjct: 240 IDTSIILFLNKKDL 253
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W + ++F+V ++ D R+ E+ I+N+R
Sbjct: 183 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 242
Query: 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 84
+ I++F NK DL ++EK+ + I+D
Sbjct: 243 SNVSIILFLNKTDL--------LEEKVQVVSIKD 268
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W + ++F+V ++ D R+ E+ I+N+R
Sbjct: 207 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266
Query: 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 84
+ I++F NK DL ++EK+ + I+D
Sbjct: 267 SNVSIILFLNKTDL--------LEEKVQVVSIKD 292
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 53 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 110
Query: 60 NKQDLP 65
NK DL
Sbjct: 111 NKCDLT 116
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q + +N+ +A +L+ N
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLVGN 133
Query: 61 KQDL 64
K D+
Sbjct: 134 KSDM 137
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY GT G+I V D + ++ LH I ++ D ++ N
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGN 121
Query: 61 KQDLPD 66
K D P+
Sbjct: 122 KNDDPE 127
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L YY G QG+I V D RD + L+ + D + + N
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGN 129
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGL 100
K D + E+ GL R + + A T DG+
Sbjct: 130 KID----KENREVDRNEGLKFARKHSXLFIEASAKTCDGV 165
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q + +N+ +A +L+ N
Sbjct: 62 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLVGN 120
Query: 61 KQDL 64
K D+
Sbjct: 121 KSDM 124
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q + +N+ +A +L+ N
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGN 116
Query: 61 KQDL 64
K D+
Sbjct: 117 KSDM 120
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G++ V D + D R + R I + D +I N
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGN 121
Query: 61 KQDLPDAMK-PHEIQEKLGL 79
K D+ D + E EKL L
Sbjct: 122 KCDVNDKRQVSKERGEKLAL 141
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREM 50
DVGGQ R W + +IFVV + +R+ EA I N+R +
Sbjct: 209 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 268
Query: 51 RDAIILIFANKQDL 64
R +++F NKQDL
Sbjct: 269 RTISVILFLNKQDL 282
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREM 50
DVGGQ R W + +IFVV + +R+ EA I N+R +
Sbjct: 223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282
Query: 51 RDAIILIFANKQDL 64
R +++F NKQDL
Sbjct: 283 RTISVILFLNKQDL 296
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREM 50
DVGGQ R W + +IFVV + +R+ EA I N+R +
Sbjct: 209 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 268
Query: 51 RDAIILIFANKQDL 64
R +++F NKQDL
Sbjct: 269 RTISVILFLNKQDL 282
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREM 50
DVGGQ R W + +IFVV + +R+ EA I N+R +
Sbjct: 223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282
Query: 51 RDAIILIFANKQDL 64
R +++F NKQDL
Sbjct: 283 RTISVILFLNKQDL 296
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREM 50
DVGGQ R W + +IFVV + +R+ EA I N+R +
Sbjct: 223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282
Query: 51 RDAIILIFANKQDL 64
R +++F NKQDL
Sbjct: 283 RTISVILFLNKQDL 296
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W +++ IFV A+ D R+ E+ I + +
Sbjct: 167 DVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNEFL 226
Query: 51 RDAIILIFANKQDL 64
+ A+ LIF NK DL
Sbjct: 227 KGAVKLIFLNKXDL 240
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + G +IF+ + D R+ E+ + I N R
Sbjct: 170 DVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYF 229
Query: 51 RDAIILIFANKQDL 64
I++F NK+D+
Sbjct: 230 ATTSIVLFLNKKDV 243
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 120
Query: 60 NKQDLP-----DAMKPHEIQEKLGL 79
K DL D E + LG+
Sbjct: 121 IKCDLTTKKVVDYTTAKEFADSLGI 145
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G++ V D + D R + R I + D +I N
Sbjct: 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGN 119
Query: 61 KQDLPDAMK-PHEIQEKLGL 79
K D+ D + E EKL L
Sbjct: 120 KCDVNDKRQVSKERGEKLAL 139
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q + +N+ +A +L+ N
Sbjct: 58 DTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLVGN 116
Query: 61 KQD 63
K D
Sbjct: 117 KSD 119
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGG R W + ++F+V ++ D R+ E+ I+N+R
Sbjct: 183 DVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 242
Query: 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 84
+ I++F NK DL ++EK+ + I+D
Sbjct: 243 SNVSIILFLNKTDL--------LEEKVQVVSIKD 268
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q + +N+ +A +L+ N
Sbjct: 58 DTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGN 116
Query: 61 KQD 63
K D
Sbjct: 117 KSD 119
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM---RDAIILI 57
D GQ++ R + R YY G G + V D R E L + D M ++ +I++
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIIL 120
Query: 58 FANKQDL 64
NK+DL
Sbjct: 121 CGNKKDL 127
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM---RDAIILI 57
D GQ++ R + R YY G G + V D R E L + D M ++ +I++
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIIL 121
Query: 58 FANKQDL 64
NK+DL
Sbjct: 122 CGNKKDL 128
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W + G ++F+V ++ D R+ E+ I+N++
Sbjct: 205 DVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLF 264
Query: 51 RDAIILIFANKQDL 64
+ I++F NK DL
Sbjct: 265 FNVSIILFLNKMDL 278
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + ++F+V ++ D R++E++ II
Sbjct: 173 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232
Query: 51 RDAIILIFANKQDL 64
+++ +++F NK+DL
Sbjct: 233 QNSSVILFLNKKDL 246
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + ++F+V ++ D R++E++ II
Sbjct: 199 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 258
Query: 51 RDAIILIFANKQDL 64
+++ +++F NK+DL
Sbjct: 259 QNSSVILFLNKKDL 272
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + ++F+V ++ D R++E++ II
Sbjct: 193 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 252
Query: 51 RDAIILIFANKQDL 64
+++ +++F NK+DL
Sbjct: 253 QNSSVILFLNKKDL 266
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDA 53
D GQ+ R + R YY G G + V D R+ +++ARQ +
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH--------SSSNM 127
Query: 54 IILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGL 104
+I++ NK DL +++ + G R+ + A TA + E
Sbjct: 128 VIMLIGNKSDLES---RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 34/76 (44%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L ++ G + + D + R + ++ + + I++ N
Sbjct: 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149
Query: 61 KQDLPDAMKPHEIQEK 76
K DLPD + +E Q +
Sbjct: 150 KADLPDQREVNERQAR 165
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + ++F+V ++ D R++E++ II
Sbjct: 199 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 258
Query: 51 RDAIILIFANKQDL 64
+++ +++F NK+DL
Sbjct: 259 QNSSVILFLNKKDL 272
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + ++F+V ++ D R++E++ II
Sbjct: 201 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 260
Query: 51 RDAIILIFANKQDL 64
+++ +++F NK+DL
Sbjct: 261 QNSSVILFLNKKDL 274
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + V D ++ + + L + D + +IL+ N
Sbjct: 63 DTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE-LRDNADSNIVILLVGN 121
Query: 61 KQDLP 65
K DL
Sbjct: 122 KSDLK 126
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE-AR--QELHRIINDREMRDAIILI 57
D GQ+K L YY G G I D R AR +E ++ + +A I++
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVV 122
Query: 58 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
ANK D+ + K I +KL + ++ +N+ A TA GL +L
Sbjct: 123 CANKIDIKNRQK---ISKKLVMEVLKGKNYEYFEISAKTAHNF--GLPFL 167
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMAL 122
Query: 58 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYE 102
NK DL DA K + + T ++ + + A TA + E
Sbjct: 123 AGNKSDLLDARK---VTAEDAQTYAQENGLFFMETSAKTATNVKE 164
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + R YY G G + V D R + L N IILI N
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI-GN 128
Query: 61 KQDL 64
K DL
Sbjct: 129 KADL 132
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII----- 55
DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248
Query: 56 -----LIFANKQDL 64
++F NK D+
Sbjct: 249 EKTSFMLFLNKFDI 262
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G I + D + + + A Q+ I +A +L+ N
Sbjct: 60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 61 KQDLPD 66
K D+ D
Sbjct: 119 KCDMED 124
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM---RDAIILI 57
D G ++ R + R YY G G + V D R E L + D M ++ +I++
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIIL 118
Query: 58 FANKQDL 64
NK+DL
Sbjct: 119 CGNKKDL 125
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + + D A+++ A Q+ I +A +++ N
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESF-AAVQDWATQIKTYSWDNAQVILVGN 135
Query: 61 KQDLPD 66
K DL D
Sbjct: 136 KCDLED 141
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + D A+ +EL R + + +I +
Sbjct: 60 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPNIVIAL 115
Query: 58 FANKQDLPDAMKPHEIQE 75
NK DL + + E QE
Sbjct: 116 AGNKADLA-SKRAVEFQE 132
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + D A+ +EL R + + +I +
Sbjct: 58 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPNIVIAL 113
Query: 58 FANKQDLPDAMKPHEIQE 75
NK DL + + E QE
Sbjct: 114 AGNKADLA-SKRAVEFQE 130
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ + R + R YY G G + V D R + L N IILI N
Sbjct: 85 DTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI-GN 143
Query: 61 KQDL 64
K DL
Sbjct: 144 KADL 147
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R L ++ G + + D + R + ++ + + I++ N
Sbjct: 76 DTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 135
Query: 61 KQDLPD-----AMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95
K DLPD + E+ EK G+ Y + S AT
Sbjct: 136 KADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R L ++ G + + D + R + ++ + + I++ N
Sbjct: 76 DTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 135
Query: 61 KQDLPD-----AMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95
K DLPD + E+ EK G+ Y + S AT
Sbjct: 136 KADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR---DAIILI 57
D GQ++ R + R YY G G + V D R E L + D + ++++
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSR----ETYNSLAAWLTDARTLASPNIVVIL 135
Query: 58 FANKQDL 64
NK+DL
Sbjct: 136 CGNKKDL 142
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA- 59
D GQ++ L YY G Q I V D +++ A+ + + R+ +I++ A
Sbjct: 63 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKEL--QRQASPSIVIALAG 120
Query: 60 NKQDLPD 66
NK DL +
Sbjct: 121 NKADLAN 127
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + YY +G+I V D ++ D+ + + ++I+ DA +L+ N
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM-KMIDKYASEDAELLLVGN 139
Query: 61 KQD 63
K D
Sbjct: 140 KLD 142
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G I + D + + + A Q+ I +A +++ N
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWATQIKTYSWDNAQVILVGN 136
Query: 61 KQDLPDA-MKPHE----IQEKLGL 79
K D+ + + P E + E+LG
Sbjct: 137 KCDMEEERVVPTEKGQLLAEQLGF 160
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIAL 117
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 118 SGNKADLAN 126
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIAL 116
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 117 SGNKADLAN 125
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIAL 117
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 118 SGNKADLAN 126
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIAL 116
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 117 SGNKADLAN 125
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 32.0 bits (71), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIAL 116
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 117 SGNKADLAN 125
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIAL 116
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 117 SGNKADLAN 125
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIAL 116
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 117 SGNKADLAN 125
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIAL 116
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 117 SGNKADLAN 125
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 18 GTQGLIFVVDCADRDRIDEARQELHRIINDRE--------MRDAIILIFANKQDLPDAMK 69
G G++FV D A + R N RE + D I+I NK+DLPDA+
Sbjct: 97 GVDGIVFVADSAP----NRLRANAESXRNXRENLAEYGLTLDDVPIVIQVNKRDLPDALP 152
Query: 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
++ + + + V + AT G++E L ++
Sbjct: 153 VEXVRAVVD----PEGKFPVLEAVATEGKGVFETLKEVS 187
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + V D A + + L + D + +I++ N
Sbjct: 75 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGN 133
Query: 61 KQDL 64
K DL
Sbjct: 134 KSDL 137
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + V D A + + L + D + +I++ N
Sbjct: 84 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGN 142
Query: 61 KQDL 64
K DL
Sbjct: 143 KSDL 146
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 18 GTQGLIFVVDCADRDRIDEARQELHRIINDRE--------MRDAIILIFANKQDLPDAMK 69
G G++FV D A + R + N RE + D I+I NK+DLPDA+
Sbjct: 97 GVDGIVFVADSAP----NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP 152
Query: 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGL 104
++ + + + V + AT G++E L
Sbjct: 153 VEMVRAVVD----PEGKFPVLEAVATEGKGVFETL 183
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 1 DVGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDR-IDEARQELHRI-INDREMRDA-IIL 56
D+ G + +R L + + + ++FVVD A R + + + L+++ I+ ++++ +L
Sbjct: 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL 119
Query: 57 IFANKQDLPDAMKPHEIQEKL 77
I NKQD+ A IQ++L
Sbjct: 120 IACNKQDIAMAKSAKLIQQQL 140
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + YY G I V D ++ + +D A+ ++++ + + II++ AN
Sbjct: 99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL---KISSNYIIILVAN 155
Query: 61 KQD 63
K D
Sbjct: 156 KID 158
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R L ++ G + D + R ++ + + I++ N
Sbjct: 76 DTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGN 135
Query: 61 KQDLPD-----AMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95
K DLPD + E+ EK G+ Y + S AT
Sbjct: 136 KADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + + YY G Q + V DR+ + +++ E+ D + N
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA--EVGDIPTALVQN 117
Query: 61 KQDLPD 66
K DL D
Sbjct: 118 KIDLLD 123
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY + G I V D D D + + +EL +++ + + + I
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCI 116
Query: 58 FANKQDLP 65
NK DL
Sbjct: 117 VGNKIDLE 124
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY + G I V D D D + + +EL +++ + + + I
Sbjct: 75 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCI 130
Query: 58 FANKQDL 64
NK DL
Sbjct: 131 VGNKIDL 137
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R L ++ G + D + R ++ + + I++ N
Sbjct: 76 DTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGN 135
Query: 61 KQDLPD-----AMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95
K DLPD + E+ EK G+ Y + S AT
Sbjct: 136 KADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y G + V DR +E + +I+ ++ D +++ N
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122
Query: 61 KQDL 64
K DL
Sbjct: 123 KADL 126
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY + G I V D D D + + +EL +++ + + + I
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCI 116
Query: 58 FANKQDLP 65
NK DL
Sbjct: 117 VGNKIDLE 124
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + V D A + + L + D + +I++ N
Sbjct: 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGN 118
Query: 61 KQDL 64
K DL
Sbjct: 119 KSDL 122
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY Q + V D +AR +ELH ++ +D II +
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELH----EQASKDIIIAL 113
Query: 58 FANKQD 63
NK D
Sbjct: 114 VGNKID 119
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D G ++ L YY G Q I V D + D A+ +EL R + + +I +
Sbjct: 60 DTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPNIVIAL 115
Query: 58 FANKQDLPDAMKPHEIQE 75
NK DL + + E QE
Sbjct: 116 AGNKADLA-SKRAVEFQE 132
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR-----DAII 55
D GQ++ R L YY G+ I V D + + + RE+R ++
Sbjct: 60 DTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV------RELRQHGPPSIVV 113
Query: 56 LIFANKQDLPDAMKPHE 72
I NK DL D + E
Sbjct: 114 AIAGNKCDLTDVREVME 130
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + V D + + L + + + A+ LI N
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI-GN 126
Query: 61 KQDL 64
K DL
Sbjct: 127 KSDL 130
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 1 DVGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRD 52
D GQ++ R + +HYY ++FV D + I+E +Q H + ND
Sbjct: 84 DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQ--HLLANDIPR-- 139
Query: 53 AIILIFANKQDLPDAMK-PHEIQEKLGLT 80
++ NK DL A++ P ++ +K T
Sbjct: 140 ---ILVGNKCDLRSAIQVPTDLAQKFADT 165
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY L+ + D ++ D + L I++ D +++ N
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE-IHEYAQHDVALMLLGN 124
Query: 61 KQD 63
K D
Sbjct: 125 KVD 127
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 1 DVGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRD 52
D GQ++ R + +HYY ++FV D + I+E +Q H + ND
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ--HLLANDIPR-- 130
Query: 53 AIILIFANKQDLPDAMK-PHEIQEKLGLT 80
++ NK DL A++ P ++ +K T
Sbjct: 131 ---ILVGNKCDLRSAIQVPTDLAQKFADT 156
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D G ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 60 DTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIAL 115
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 116 SGNKADLAN 124
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ L YY G+ + V D +D ++ + + + + ++ I N
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIAGN 136
Query: 61 KQDLPD 66
K DL D
Sbjct: 137 KCDLSD 142
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y +G + V DR +E + +I+ ++ + +++ N
Sbjct: 59 DTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGN 118
Query: 61 KQDL 64
K DL
Sbjct: 119 KADL 122
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNW---YVQPSCATTAD 98
K DL D + ++E + R W YV+ S T A+
Sbjct: 128 KSDLEDK-RQVSVEE----AKNRAEQWNVNYVETSAKTRAN 163
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 131
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNW---YVQPSCATTAD 98
K DL D + ++E + R W YV+ S T A+
Sbjct: 132 KSDLEDK-RQVSVEE----AKNRAEQWNVNYVETSAKTRAN 167
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 60 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNW---YVQPSCATTAD 98
K DL D + ++E + R W YV+ S T A+
Sbjct: 120 KSDLEDK-RQVSVEE----AKNRAEQWNVNYVETSAKTRAN 155
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVD--CADRDR-IDEARQELHRIINDREMRDAIILI 57
D GQ++ R + + YY LI D C + R + E +E+ + +++ I ++
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK----VITVL 136
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 137 VGNKIDLAE 145
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII--LIF 58
D GQ++ R + + YY G I D R H I + R+ + I L+
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVP---HWIEDVRKYAGSNIVQLLI 140
Query: 59 ANKQDLPD 66
NK DL +
Sbjct: 141 GNKSDLSE 148
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 5 QDKIRPLWRHYYTGTQG--LIFVVDCAD--------RDRIDEAR 38
Q++++P RH+Y QG F+++C RD D AR
Sbjct: 29 QNEVQPSTRHFYDALQGARTAFILECKKASPSKGVIRDDFDPAR 72
>pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 31 RDRIDEARQELHRIINDREMRDA 53
++RI E +E R++ ++EMRD+
Sbjct: 848 KNRIGEVEKEYGRLVKNKEMRDS 870
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNW---YVQPSCATTAD 98
K DL D + ++E + R W YV+ S T A+
Sbjct: 118 KSDLEDK-RQVSVEE----AKNRADQWNVNYVETSAKTRAN 153
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered
Disulphide Bridge And In Complex With A Cdrp-Related
Substrate
Length = 259
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 5 QDKIRPLWRHYYTGTQGL--IFVVDCAD--------RDRIDEAR 38
Q++++P RH+Y QG F+++C RD D AR
Sbjct: 29 QNEVQPSTRHFYDALQGARTAFILECKKASPSKGVIRDDFDPAR 72
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 45 INDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 87
I + +++ ++L F +K ++ D + +EI GLTR++ NW
Sbjct: 135 IRNNKLKSIVMLGFLSKLEVLD-LHGNEITNTGGLTRLKKVNW 176
>pdb|3VKW|A Chain A, Crystal Structure Of The Superfamily 1 Helicase From
Tomato Mosaic Virus
Length = 446
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYE 102
E ++K G+ + + W V+PS A G+ E
Sbjct: 72 ETRQKFGVLDVASKRWLVKPSAKNHAWGVVE 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,560,772
Number of Sequences: 62578
Number of extensions: 127649
Number of successful extensions: 506
Number of sequences better than 100.0: 193
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 193
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)