Query psy17510
Match_columns 113
No_of_seqs 104 out of 1561
Neff 10.6
Searched_HMMs 46136
Date Sat Aug 17 00:26:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 99.9 1.1E-25 2.5E-30 136.6 12.3 111 1-111 67-177 (181)
2 smart00177 ARF ARF-like small 99.9 3.7E-25 7.9E-30 133.7 12.5 111 1-111 63-173 (175)
3 cd04149 Arf6 Arf6 subfamily. 99.9 3.2E-25 7E-30 133.1 12.2 109 1-109 59-167 (168)
4 KOG0084|consensus 99.9 1.5E-26 3.3E-31 138.1 6.3 106 1-111 64-171 (205)
5 cd04150 Arf1_5_like Arf1-Arf5- 99.9 7.3E-25 1.6E-29 130.5 12.3 109 1-109 50-158 (159)
6 PTZ00133 ADP-ribosylation fact 99.9 2.6E-24 5.7E-29 130.7 12.4 111 1-111 67-177 (182)
7 KOG0078|consensus 99.9 1.5E-25 3.2E-30 135.3 6.3 108 1-112 67-174 (207)
8 PF00025 Arf: ADP-ribosylation 99.9 7E-24 1.5E-28 128.1 12.4 111 1-111 64-175 (175)
9 KOG0092|consensus 99.9 4.5E-25 9.7E-30 131.4 6.2 106 1-112 60-167 (200)
10 cd04120 Rab12 Rab12 subfamily. 99.9 1.2E-24 2.6E-29 134.0 8.2 106 1-111 55-162 (202)
11 KOG0070|consensus 99.9 1E-23 2.2E-28 125.0 11.3 112 1-112 67-178 (181)
12 KOG0094|consensus 99.9 2.3E-24 5E-29 128.8 8.4 108 1-111 77-184 (221)
13 KOG0075|consensus 99.9 1E-23 2.2E-28 121.0 10.7 112 1-112 71-182 (186)
14 cd04121 Rab40 Rab40 subfamily. 99.9 1.4E-24 3E-29 132.5 7.4 104 1-111 61-166 (189)
15 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.8E-23 4E-28 125.4 12.1 109 1-109 49-166 (167)
16 cd04158 ARD1 ARD1 subfamily. 99.9 2.6E-23 5.6E-28 124.9 12.7 111 1-111 49-160 (169)
17 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3E-23 6.5E-28 125.2 12.4 109 1-109 65-173 (174)
18 cd04154 Arl2 Arl2 subfamily. 99.9 3.3E-23 7.2E-28 124.8 12.3 109 1-109 64-172 (173)
19 cd04151 Arl1 Arl1 subfamily. 99.9 4.5E-23 9.8E-28 122.5 12.5 109 1-109 49-157 (158)
20 cd04157 Arl6 Arl6 subfamily. 99.9 5.2E-23 1.1E-27 122.3 12.5 110 1-110 51-162 (162)
21 KOG0071|consensus 99.9 3.5E-23 7.5E-28 118.1 10.9 112 1-112 67-178 (180)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 7.7E-24 1.7E-28 127.6 6.9 106 1-111 56-163 (172)
23 PTZ00099 rab6; Provisional 99.9 8.1E-24 1.8E-28 127.9 6.9 105 1-111 35-141 (176)
24 smart00178 SAR Sar1p-like memb 99.9 1.3E-22 2.8E-27 123.4 12.2 110 1-110 67-183 (184)
25 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2.2E-22 4.7E-27 119.6 12.2 109 1-109 50-159 (160)
26 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2E-22 4.3E-27 120.6 11.6 107 1-109 50-163 (164)
27 KOG0087|consensus 99.9 1.3E-23 2.8E-28 126.8 6.0 107 1-111 69-175 (222)
28 smart00176 RAN Ran (Ras-relate 99.9 1.3E-22 2.9E-27 124.8 10.5 103 1-111 50-153 (200)
29 cd01875 RhoG RhoG subfamily. 99.9 1.5E-22 3.3E-27 123.8 10.6 109 1-111 57-176 (191)
30 cd04133 Rop_like Rop subfamily 99.9 2.3E-23 5E-28 125.9 6.4 109 1-111 55-172 (176)
31 cd04136 Rap_like Rap-like subf 99.9 6.6E-23 1.4E-27 122.0 8.0 107 1-111 55-162 (163)
32 cd04175 Rap1 Rap1 subgroup. T 99.9 4.8E-23 1E-27 123.0 7.2 107 1-112 55-163 (164)
33 KOG0073|consensus 99.9 3.5E-22 7.5E-27 116.5 10.2 111 1-111 66-177 (185)
34 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 8.6E-22 1.9E-26 119.7 12.4 111 1-111 58-169 (183)
35 cd04176 Rap2 Rap2 subgroup. T 99.9 7.6E-23 1.7E-27 121.9 7.5 107 1-111 55-162 (163)
36 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1E-21 2.2E-26 117.4 12.1 109 1-109 56-166 (167)
37 KOG0098|consensus 99.9 3.2E-23 6.9E-28 123.1 5.2 107 1-111 61-167 (216)
38 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.7E-21 3.7E-26 115.6 12.5 110 1-110 49-158 (158)
39 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 7.4E-23 1.6E-27 124.3 6.7 108 1-110 59-178 (182)
40 cd00879 Sar1 Sar1 subfamily. 99.9 1.4E-21 3E-26 119.2 12.3 111 1-111 69-190 (190)
41 cd04122 Rab14 Rab14 subfamily. 99.9 1.4E-22 3.1E-27 121.2 7.6 105 1-111 57-163 (166)
42 cd04127 Rab27A Rab27a subfamil 99.9 1.1E-22 2.3E-27 123.1 7.0 106 1-111 69-176 (180)
43 PTZ00369 Ras-like protein; Pro 99.9 2.2E-22 4.7E-27 122.9 7.9 106 1-111 59-166 (189)
44 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.9E-22 6.3E-27 119.3 7.8 106 1-111 56-163 (164)
45 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 2.7E-22 5.9E-27 125.6 7.7 108 1-110 67-186 (232)
46 cd04126 Rab20 Rab20 subfamily. 99.9 3.7E-22 8E-27 124.3 8.2 110 1-111 50-189 (220)
47 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.1E-21 4.5E-26 119.5 11.4 107 1-111 56-167 (201)
48 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2E-21 4.3E-26 115.3 10.7 106 1-111 55-161 (162)
49 cd04144 Ras2 Ras2 subfamily. 99.9 3E-22 6.5E-27 122.3 7.2 106 1-111 53-162 (190)
50 PLN03071 GTP-binding nuclear p 99.9 1.3E-21 2.9E-26 121.9 10.1 103 1-111 68-171 (219)
51 cd04128 Spg1 Spg1p. Spg1p (se 99.9 9.9E-22 2.1E-26 119.4 8.7 109 1-111 55-165 (182)
52 smart00173 RAS Ras subfamily o 99.9 8.1E-22 1.8E-26 117.5 7.6 107 1-112 54-162 (164)
53 cd04134 Rho3 Rho3 subfamily. 99.9 4.5E-22 9.8E-27 121.5 6.6 109 1-111 54-173 (189)
54 KOG0080|consensus 99.9 1E-22 2.2E-27 118.6 3.5 108 1-111 66-173 (209)
55 cd00877 Ran Ran (Ras-related n 99.9 3.5E-21 7.6E-26 115.4 10.1 104 1-111 55-158 (166)
56 cd04117 Rab15 Rab15 subfamily. 99.9 1.2E-21 2.6E-26 116.8 8.0 105 1-110 55-160 (161)
57 cd04131 Rnd Rnd subfamily. Th 99.9 4.5E-22 9.7E-27 120.5 6.2 108 1-110 55-174 (178)
58 cd04111 Rab39 Rab39 subfamily. 99.9 1.1E-21 2.4E-26 121.6 7.8 106 1-111 58-165 (211)
59 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.5E-21 3.2E-26 117.5 8.1 107 1-111 55-164 (170)
60 cd01874 Cdc42 Cdc42 subfamily. 99.9 7E-22 1.5E-26 119.4 6.7 105 1-110 55-173 (175)
61 cd04140 ARHI_like ARHI subfami 99.9 1.5E-21 3.3E-26 116.7 7.7 105 1-110 55-163 (165)
62 KOG0091|consensus 99.9 1.2E-21 2.5E-26 114.5 6.8 107 1-111 64-172 (213)
63 cd04159 Arl10_like Arl10-like 99.9 2.2E-20 4.7E-25 110.2 12.5 109 1-109 50-158 (159)
64 cd04155 Arl3 Arl3 subfamily. 99.9 1.7E-20 3.6E-25 112.8 12.0 110 1-110 64-173 (173)
65 cd04109 Rab28 Rab28 subfamily. 99.9 1.5E-21 3.2E-26 121.4 7.6 106 1-111 56-165 (215)
66 cd01873 RhoBTB RhoBTB subfamil 99.9 1.2E-21 2.7E-26 120.1 6.9 106 1-110 72-194 (195)
67 KOG0088|consensus 99.9 3.2E-22 6.9E-27 116.4 4.0 104 1-110 68-173 (218)
68 KOG0093|consensus 99.9 6.4E-22 1.4E-26 113.8 5.1 102 1-111 76-182 (193)
69 cd01871 Rac1_like Rac1-like su 99.9 1.1E-20 2.4E-25 114.0 10.8 108 1-110 55-173 (174)
70 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.2E-21 4.7E-26 116.0 7.4 105 1-111 57-163 (166)
71 cd01865 Rab3 Rab3 subfamily. 99.9 2E-21 4.4E-26 116.1 7.3 105 1-111 56-162 (165)
72 KOG0079|consensus 99.9 5.9E-22 1.3E-26 114.1 4.5 104 1-110 63-167 (198)
73 cd04110 Rab35 Rab35 subfamily. 99.9 3.2E-21 7E-26 118.6 7.9 104 1-111 61-166 (199)
74 cd01867 Rab8_Rab10_Rab13_like 99.9 3E-21 6.5E-26 115.6 7.5 105 1-111 58-164 (167)
75 cd04119 RJL RJL (RabJ-Like) su 99.9 2.8E-21 6.2E-26 115.2 7.3 106 1-111 55-166 (168)
76 KOG0081|consensus 99.9 1.6E-21 3.5E-26 113.6 5.9 107 1-110 73-179 (219)
77 cd04143 Rhes_like Rhes_like su 99.9 3E-20 6.5E-25 117.6 12.1 108 1-112 54-171 (247)
78 cd01868 Rab11_like Rab11-like. 99.8 5.4E-21 1.2E-25 114.1 7.7 105 1-111 58-164 (165)
79 cd04115 Rab33B_Rab33A Rab33B/R 99.8 3.7E-21 8E-26 115.6 6.9 108 1-112 57-169 (170)
80 cd04101 RabL4 RabL4 (Rab-like4 99.8 4.8E-21 1E-25 114.2 7.1 105 1-111 58-163 (164)
81 cd04177 RSR1 RSR1 subgroup. R 99.8 7.3E-21 1.6E-25 114.0 7.7 107 1-111 55-163 (168)
82 cd04112 Rab26 Rab26 subfamily. 99.8 5.6E-21 1.2E-25 116.8 7.3 105 1-111 56-162 (191)
83 cd04124 RabL2 RabL2 subfamily. 99.8 3.2E-20 6.8E-25 110.7 10.2 103 1-111 55-157 (161)
84 cd04116 Rab9 Rab9 subfamily. 99.8 3.9E-20 8.5E-25 110.9 10.5 107 1-111 60-170 (170)
85 cd04103 Centaurin_gamma Centau 99.8 5.1E-21 1.1E-25 113.9 6.5 105 1-111 53-158 (158)
86 KOG0394|consensus 99.8 4.4E-21 9.5E-26 113.9 5.9 110 1-111 64-177 (210)
87 cd04106 Rab23_lke Rab23-like s 99.8 7.3E-21 1.6E-25 113.1 6.9 103 1-110 57-161 (162)
88 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.5E-20 3.3E-25 117.2 8.3 108 1-110 55-174 (222)
89 cd04132 Rho4_like Rho4-like su 99.8 9E-21 2E-25 115.3 7.1 104 1-111 55-166 (187)
90 smart00174 RHO Rho (Ras homolo 99.8 1.2E-20 2.6E-25 113.5 7.6 109 1-111 52-171 (174)
91 cd01866 Rab2 Rab2 subfamily. 99.8 1.2E-20 2.6E-25 113.1 7.5 105 1-111 59-165 (168)
92 cd04113 Rab4 Rab4 subfamily. 99.8 1.2E-20 2.7E-25 112.2 7.4 105 1-111 55-161 (161)
93 KOG0095|consensus 99.8 3.2E-21 6.9E-26 111.4 4.6 105 1-110 62-167 (213)
94 KOG0395|consensus 99.8 1.6E-20 3.5E-25 115.0 7.9 109 1-112 57-165 (196)
95 cd01864 Rab19 Rab19 subfamily. 99.8 5E-20 1.1E-24 110.0 9.8 106 1-111 58-165 (165)
96 KOG0076|consensus 99.8 4.1E-21 9E-26 113.0 4.8 111 1-111 75-186 (197)
97 cd04125 RabA_like RabA-like su 99.8 1.9E-20 4.1E-25 114.1 7.7 106 1-111 55-161 (188)
98 PLN03110 Rab GTPase; Provision 99.8 1.6E-20 3.5E-25 116.8 7.3 106 1-111 67-173 (216)
99 KOG0086|consensus 99.8 3.5E-20 7.7E-25 107.4 8.1 106 1-110 64-169 (214)
100 cd04118 Rab24 Rab24 subfamily. 99.8 3E-20 6.5E-25 113.6 7.9 104 1-111 56-165 (193)
101 cd04147 Ras_dva Ras-dva subfam 99.8 1E-19 2.3E-24 111.8 9.9 108 1-112 53-163 (198)
102 cd01861 Rab6 Rab6 subfamily. 99.8 3.7E-20 7.9E-25 110.0 7.6 105 1-111 55-161 (161)
103 cd01863 Rab18 Rab18 subfamily. 99.8 1.7E-19 3.7E-24 107.2 10.5 105 1-110 55-160 (161)
104 PLN03118 Rab family protein; P 99.8 4.6E-20 1E-24 114.3 8.1 106 1-111 68-176 (211)
105 cd01860 Rab5_related Rab5-rela 99.8 4.5E-20 9.7E-25 109.8 7.7 105 1-111 56-162 (163)
106 cd04130 Wrch_1 Wrch-1 subfamil 99.8 3.1E-20 6.8E-25 111.8 6.0 103 1-109 54-171 (173)
107 KOG0072|consensus 99.8 1.7E-19 3.6E-24 103.5 8.3 112 1-112 68-179 (182)
108 cd04146 RERG_RasL11_like RERG/ 99.8 5.6E-20 1.2E-24 109.8 6.8 106 1-111 53-163 (165)
109 smart00175 RAB Rab subfamily o 99.8 8.6E-20 1.9E-24 108.6 7.1 105 1-111 55-161 (164)
110 cd04148 RGK RGK subfamily. Th 99.8 8E-20 1.7E-24 114.1 7.3 105 1-112 56-163 (221)
111 cd04123 Rab21 Rab21 subfamily. 99.8 9.7E-20 2.1E-24 108.0 7.3 105 1-111 55-161 (162)
112 cd01892 Miro2 Miro2 subfamily. 99.8 4.8E-19 1E-23 106.4 10.3 101 1-111 60-165 (169)
113 cd04139 RalA_RalB RalA/RalB su 99.8 7.3E-19 1.6E-23 104.5 10.9 106 1-111 54-161 (164)
114 PLN03108 Rab family protein; P 99.8 1E-19 2.3E-24 112.8 7.5 105 1-111 61-167 (210)
115 PF00071 Ras: Ras family; Int 99.8 4.5E-19 9.7E-24 105.5 9.5 106 1-112 54-161 (162)
116 cd01862 Rab7 Rab7 subfamily. 99.8 1.8E-18 3.8E-23 103.7 11.3 107 1-111 55-166 (172)
117 cd04135 Tc10 TC10 subfamily. 99.8 1.5E-19 3.3E-24 108.7 6.6 109 1-111 54-173 (174)
118 KOG0083|consensus 99.8 8.2E-20 1.8E-24 103.8 4.9 102 1-111 53-159 (192)
119 cd04114 Rab30 Rab30 subfamily. 99.8 4E-19 8.6E-24 106.4 7.7 106 1-111 62-168 (169)
120 cd01893 Miro1 Miro1 subfamily. 99.8 2.2E-18 4.8E-23 103.1 9.1 107 1-111 53-163 (166)
121 cd04137 RheB Rheb (Ras Homolog 99.8 7.5E-19 1.6E-23 106.3 7.1 106 1-111 55-162 (180)
122 cd04142 RRP22 RRP22 subfamily. 99.8 3.7E-18 7.9E-23 105.0 10.0 107 1-111 55-173 (198)
123 cd01890 LepA LepA subfamily. 99.8 7E-18 1.5E-22 101.8 10.8 102 1-112 73-177 (179)
124 cd01870 RhoA_like RhoA-like su 99.8 4.5E-18 9.7E-23 102.4 9.9 109 1-111 55-174 (175)
125 cd00876 Ras Ras family. The R 99.8 1.3E-18 2.7E-23 103.0 7.4 106 1-111 53-160 (160)
126 cd00154 Rab Rab family. Rab G 99.8 1.5E-17 3.2E-22 98.0 10.8 103 1-109 55-159 (159)
127 KOG0393|consensus 99.8 5.5E-18 1.2E-22 102.8 7.5 109 1-111 59-178 (198)
128 cd04129 Rho2 Rho2 subfamily. 99.7 3.3E-18 7.1E-23 104.3 6.2 105 1-111 55-172 (187)
129 KOG0074|consensus 99.7 4.1E-18 8.8E-23 97.6 5.8 111 1-111 68-178 (185)
130 cd00157 Rho Rho (Ras homology) 99.7 4.3E-18 9.4E-23 101.9 6.3 107 1-109 54-170 (171)
131 KOG0097|consensus 99.7 1.9E-17 4.1E-22 95.1 7.9 105 1-110 66-171 (215)
132 PTZ00132 GTP-binding nuclear p 99.7 2E-16 4.3E-21 98.3 10.8 104 1-111 64-167 (215)
133 cd01898 Obg Obg subfamily. Th 99.7 1.9E-16 4.2E-21 94.7 9.4 108 1-111 54-170 (170)
134 COG2229 Predicted GTPase [Gene 99.7 6.6E-16 1.4E-20 92.0 10.3 103 1-110 74-176 (187)
135 cd04102 RabL3 RabL3 (Rab-like3 99.7 5E-16 1.1E-20 95.8 10.1 66 1-66 60-143 (202)
136 cd04171 SelB SelB subfamily. 99.7 1.7E-16 3.7E-21 94.3 7.7 103 1-109 57-163 (164)
137 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 6.5E-16 1.4E-20 92.2 9.6 105 1-111 56-165 (168)
138 cd01897 NOG NOG1 is a nucleola 99.7 1.2E-15 2.6E-20 91.2 8.5 87 18-111 79-167 (168)
139 cd01888 eIF2_gamma eIF2-gamma 99.6 1.1E-15 2.3E-20 94.4 8.3 107 1-112 89-199 (203)
140 PRK12299 obgE GTPase CgtA; Rev 99.6 1.1E-15 2.5E-20 100.4 8.4 107 1-111 212-327 (335)
141 cd00881 GTP_translation_factor 99.6 8.2E-15 1.8E-19 88.8 11.4 107 1-112 68-187 (189)
142 TIGR02528 EutP ethanolamine ut 99.6 1.7E-15 3.7E-20 88.4 6.2 95 1-108 41-141 (142)
143 TIGR02729 Obg_CgtA Obg family 99.6 6.4E-15 1.4E-19 96.7 9.4 107 1-111 211-328 (329)
144 TIGR01393 lepA GTP-binding pro 99.6 9.2E-15 2E-19 102.2 10.7 102 1-112 76-180 (595)
145 cd00882 Ras_like_GTPase Ras-li 99.6 9.7E-15 2.1E-19 84.8 8.9 105 1-109 51-157 (157)
146 cd01891 TypA_BipA TypA (tyrosi 99.6 1.1E-14 2.3E-19 89.3 9.1 95 1-100 71-170 (194)
147 cd01878 HflX HflX subfamily. 99.6 1.2E-14 2.6E-19 89.6 9.3 88 15-111 117-204 (204)
148 cd01879 FeoB Ferrous iron tran 99.6 9.8E-15 2.1E-19 86.3 8.6 101 1-112 49-157 (158)
149 TIGR03594 GTPase_EngA ribosome 99.6 7.2E-15 1.6E-19 99.5 9.0 105 1-110 226-342 (429)
150 PRK03003 GTP-binding protein D 99.6 8.6E-15 1.9E-19 100.2 9.2 106 1-111 265-381 (472)
151 KOG4252|consensus 99.6 7.9E-16 1.7E-20 91.6 3.6 104 1-111 75-180 (246)
152 cd01881 Obg_like The Obg-like 99.6 1.4E-14 3E-19 87.0 9.0 107 1-110 50-175 (176)
153 TIGR00157 ribosome small subun 99.6 7.5E-15 1.6E-19 93.0 8.1 96 6-110 24-121 (245)
154 PRK15467 ethanolamine utilizat 99.6 1.7E-14 3.7E-19 85.9 8.7 100 1-111 43-146 (158)
155 PF00009 GTP_EFTU: Elongation 99.6 4.9E-15 1.1E-19 90.4 6.1 106 1-112 76-187 (188)
156 PRK04213 GTP-binding protein; 99.6 5.3E-14 1.1E-18 86.5 9.4 107 1-112 58-192 (201)
157 cd04105 SR_beta Signal recogni 99.6 2.4E-14 5.3E-19 88.4 7.9 109 1-109 54-202 (203)
158 PLN00023 GTP-binding protein; 99.6 1.8E-14 3.8E-19 93.8 7.3 66 1-66 89-165 (334)
159 PRK05433 GTP-binding protein L 99.6 7.3E-14 1.6E-18 97.9 10.9 102 1-112 80-184 (600)
160 cd01894 EngA1 EngA1 subfamily. 99.6 5.7E-14 1.2E-18 82.8 8.9 98 1-111 51-157 (157)
161 PRK03003 GTP-binding protein D 99.5 7.3E-14 1.6E-18 95.7 10.2 99 1-111 92-198 (472)
162 cd01889 SelB_euk SelB subfamil 99.5 6.1E-14 1.3E-18 85.8 8.9 107 1-112 74-186 (192)
163 TIGR00487 IF-2 translation ini 99.5 5.5E-14 1.2E-18 98.1 9.7 103 1-109 141-247 (587)
164 cd00880 Era_like Era (E. coli 99.5 1.4E-13 3.1E-18 80.7 9.8 106 1-111 51-163 (163)
165 CHL00189 infB translation init 99.5 8.5E-14 1.8E-18 98.9 10.0 104 1-110 301-408 (742)
166 TIGR03156 GTP_HflX GTP-binding 99.5 9.4E-14 2E-18 92.0 9.6 99 1-110 243-350 (351)
167 PRK05306 infB translation init 99.5 1.3E-13 2.7E-18 98.7 10.2 103 1-109 343-449 (787)
168 KOG1673|consensus 99.5 3.3E-14 7.2E-19 82.9 6.0 108 1-110 75-184 (205)
169 TIGR00231 small_GTP small GTP- 99.5 2.1E-13 4.5E-18 79.9 9.5 103 1-108 56-160 (161)
170 KOG3883|consensus 99.5 9.1E-14 2E-18 80.9 7.6 108 1-111 66-174 (198)
171 TIGR00436 era GTP-binding prot 99.5 2.3E-13 4.9E-18 87.4 10.0 103 1-112 54-164 (270)
172 COG1100 GTPase SAR1 and relate 99.5 2.5E-13 5.4E-18 84.4 9.7 110 1-111 60-184 (219)
173 PRK05291 trmE tRNA modificatio 99.5 9.3E-14 2E-18 94.6 8.4 93 1-111 269-369 (449)
174 TIGR03680 eif2g_arch translati 99.5 1E-13 2.3E-18 93.4 8.4 106 1-111 86-195 (406)
175 cd04164 trmE TrmE (MnmE, ThdF, 99.5 3.5E-13 7.6E-18 79.3 9.1 94 1-111 55-156 (157)
176 KOG0096|consensus 99.5 2.4E-14 5.2E-19 85.8 3.8 104 1-111 65-168 (216)
177 PRK15494 era GTPase Era; Provi 99.5 3E-13 6.5E-18 89.3 9.3 102 1-112 106-216 (339)
178 COG0532 InfB Translation initi 99.5 4.8E-13 1.1E-17 90.8 10.0 101 1-110 61-168 (509)
179 cd04165 GTPBP1_like GTPBP1-lik 99.5 4.2E-13 9.2E-18 84.0 9.1 104 1-109 90-220 (224)
180 cd01895 EngA2 EngA2 subfamily. 99.5 9E-13 1.9E-17 78.7 10.2 92 14-110 80-173 (174)
181 PRK12297 obgE GTPase CgtA; Rev 99.5 6.8E-13 1.5E-17 89.6 10.5 103 1-111 212-326 (424)
182 TIGR00475 selB selenocysteine- 99.5 1.1E-13 2.3E-18 96.8 6.7 105 1-111 56-165 (581)
183 TIGR00450 mnmE_trmE_thdF tRNA 99.5 7.2E-13 1.6E-17 90.1 10.2 95 1-111 257-359 (442)
184 PRK00093 GTP-binding protein D 99.5 5E-13 1.1E-17 90.8 9.1 104 1-109 227-341 (435)
185 TIGR00491 aIF-2 translation in 99.5 8.1E-13 1.7E-17 92.3 9.7 104 1-109 75-213 (590)
186 PRK09518 bifunctional cytidyla 99.5 6.2E-13 1.4E-17 95.0 9.0 93 14-111 528-620 (712)
187 KOG1145|consensus 99.4 7.3E-13 1.6E-17 90.4 8.2 105 1-110 207-314 (683)
188 PRK04000 translation initiatio 99.4 1.4E-12 3.1E-17 88.0 9.6 106 1-111 91-200 (411)
189 PRK11058 GTPase HflX; Provisio 99.4 3.6E-12 7.8E-17 86.3 11.5 99 1-111 251-361 (426)
190 TIGR01394 TypA_BipA GTP-bindin 99.4 1.2E-12 2.6E-17 91.7 9.0 107 1-112 70-191 (594)
191 cd01883 EF1_alpha Eukaryotic e 99.4 8.2E-13 1.8E-17 82.5 7.4 98 1-101 83-194 (219)
192 KOG0077|consensus 99.4 5.2E-13 1.1E-17 78.6 5.9 111 1-111 70-192 (193)
193 PRK12296 obgE GTPase CgtA; Rev 99.4 9.9E-13 2.1E-17 90.1 7.9 106 1-111 212-339 (500)
194 TIGR00437 feoB ferrous iron tr 99.4 7.4E-13 1.6E-17 92.8 7.2 99 1-110 47-153 (591)
195 TIGR00483 EF-1_alpha translati 99.4 6E-13 1.3E-17 90.3 6.2 99 1-102 91-197 (426)
196 KOG4423|consensus 99.4 5.8E-13 1.3E-17 79.8 5.1 107 1-111 81-193 (229)
197 cd04168 TetM_like Tet(M)-like 99.4 7.9E-12 1.7E-16 78.9 10.3 107 1-112 70-235 (237)
198 smart00275 G_alpha G protein a 99.4 2.1E-12 4.5E-17 85.4 7.9 109 1-109 190-331 (342)
199 PRK12298 obgE GTPase CgtA; Rev 99.4 4.5E-12 9.8E-17 85.0 9.4 109 1-111 213-332 (390)
200 PRK10512 selenocysteinyl-tRNA- 99.4 1.9E-12 4.2E-17 91.0 7.9 103 1-110 57-164 (614)
201 PRK10218 GTP-binding protein; 99.4 5.2E-12 1.1E-16 88.6 9.7 107 1-112 74-195 (607)
202 PRK00093 GTP-binding protein D 99.4 4.3E-12 9.4E-17 86.2 9.1 94 1-109 55-159 (435)
203 PRK00089 era GTPase Era; Revie 99.4 3.6E-12 7.8E-17 82.6 8.3 103 1-111 59-170 (292)
204 KOG0462|consensus 99.4 5.6E-12 1.2E-16 86.1 9.4 102 1-112 131-235 (650)
205 cd00066 G-alpha G protein alph 99.4 2.5E-12 5.4E-17 84.3 7.6 110 1-110 167-309 (317)
206 PRK04004 translation initiatio 99.4 6.6E-12 1.4E-16 88.0 10.1 103 1-108 77-214 (586)
207 PRK09518 bifunctional cytidyla 99.4 7.9E-12 1.7E-16 89.4 10.7 99 1-111 329-435 (712)
208 TIGR03594 GTPase_EngA ribosome 99.4 6E-12 1.3E-16 85.4 9.2 99 1-111 53-159 (429)
209 PRK14845 translation initiatio 99.4 1.2E-11 2.6E-16 90.7 10.8 104 1-109 532-670 (1049)
210 PTZ00327 eukaryotic translatio 99.4 7.4E-12 1.6E-16 85.4 8.8 106 1-111 123-232 (460)
211 PRK12317 elongation factor 1-a 99.3 4.7E-12 1E-16 85.9 7.6 99 1-102 90-195 (425)
212 PRK00454 engB GTP-binding prot 99.3 5E-12 1.1E-16 77.3 6.7 106 1-112 76-194 (196)
213 cd01859 MJ1464 MJ1464. This f 99.3 8.1E-12 1.7E-16 74.1 7.4 94 8-111 2-95 (156)
214 cd04163 Era Era subfamily. Er 99.3 8.9E-12 1.9E-16 73.8 7.4 102 1-110 57-167 (168)
215 KOG0090|consensus 99.3 4.1E-11 8.9E-16 73.4 10.0 110 1-111 88-238 (238)
216 COG0481 LepA Membrane GTPase L 99.3 2.2E-11 4.8E-16 82.2 9.2 102 1-112 82-186 (603)
217 cd01884 EF_Tu EF-Tu subfamily. 99.3 3.4E-11 7.3E-16 74.1 9.2 95 1-100 71-171 (195)
218 cd01855 YqeH YqeH. YqeH is an 99.3 1.2E-11 2.6E-16 75.6 6.0 97 8-111 24-124 (190)
219 cd04166 CysN_ATPS CysN_ATPS su 99.3 2.4E-11 5.1E-16 75.4 7.4 98 1-102 83-184 (208)
220 PF08477 Miro: Miro-like prote 99.3 5.3E-12 1.2E-16 71.5 3.8 61 1-63 56-119 (119)
221 TIGR03598 GTPase_YsxC ribosome 99.3 1.4E-11 3E-16 74.7 5.3 93 1-101 70-179 (179)
222 PRK12736 elongation factor Tu; 99.3 6.6E-11 1.4E-15 79.7 9.0 106 1-111 81-200 (394)
223 PRK12289 GTPase RsgA; Reviewed 99.2 4.5E-11 9.7E-16 79.2 7.8 93 9-110 80-173 (352)
224 COG1159 Era GTPase [General fu 99.2 8E-11 1.7E-15 75.4 8.4 104 1-112 60-172 (298)
225 PF09439 SRPRB: Signal recogni 99.2 2.8E-11 6.1E-16 73.2 5.5 73 1-73 55-133 (181)
226 PRK09866 hypothetical protein; 99.2 3.5E-10 7.5E-15 79.4 10.9 108 1-111 236-352 (741)
227 PF02421 FeoB_N: Ferrous iron 99.2 5.3E-11 1.1E-15 70.5 5.9 92 1-107 53-156 (156)
228 cd04169 RF3 RF3 subfamily. Pe 99.2 7.7E-10 1.7E-14 71.1 11.1 62 1-67 77-138 (267)
229 PRK13768 GTPase; Provisional 99.2 7E-11 1.5E-15 75.3 6.3 110 1-112 103-247 (253)
230 cd01876 YihA_EngB The YihA (En 99.2 2.4E-10 5.1E-15 67.8 8.3 97 8-111 68-170 (170)
231 PRK00741 prfC peptide chain re 99.2 5.5E-10 1.2E-14 77.6 11.1 62 1-67 85-146 (526)
232 PRK12735 elongation factor Tu; 99.2 3.6E-10 7.9E-15 76.2 9.4 105 1-110 81-201 (396)
233 cd01886 EF-G Elongation factor 99.2 5.8E-10 1.3E-14 71.7 9.8 61 1-66 70-130 (270)
234 COG1160 Predicted GTPases [Gen 99.2 3E-10 6.5E-15 76.4 8.5 104 1-109 232-348 (444)
235 PLN00043 elongation factor 1-a 99.2 1.4E-10 3E-15 79.2 7.0 96 1-101 91-202 (447)
236 cd01854 YjeQ_engC YjeQ/EngC. 99.1 1.8E-10 4E-15 74.6 6.9 86 15-109 75-161 (287)
237 TIGR00485 EF-Tu translation el 99.1 2.5E-10 5.3E-15 77.0 7.4 93 1-98 81-179 (394)
238 PRK09554 feoB ferrous iron tra 99.1 3E-10 6.6E-15 81.8 8.1 99 1-110 56-166 (772)
239 COG1160 Predicted GTPases [Gen 99.1 4E-10 8.6E-15 75.8 8.1 99 1-111 57-164 (444)
240 PF10662 PduV-EutP: Ethanolami 99.1 2.3E-10 4.9E-15 66.7 6.0 95 1-108 42-142 (143)
241 PRK00098 GTPase RsgA; Reviewed 99.1 1.7E-10 3.7E-15 75.1 5.8 85 17-109 79-164 (298)
242 PRK13351 elongation factor G; 99.1 9.2E-10 2E-14 78.8 10.0 62 1-67 79-140 (687)
243 KOG1489|consensus 99.1 1.1E-09 2.3E-14 70.9 9.2 92 12-110 268-365 (366)
244 PTZ00141 elongation factor 1- 99.1 2.6E-10 5.6E-15 77.9 6.8 98 1-102 91-203 (446)
245 KOG0082|consensus 99.1 2.6E-10 5.6E-15 75.1 6.3 110 1-110 201-342 (354)
246 CHL00071 tufA elongation facto 99.1 9E-10 2E-14 74.6 8.8 93 1-98 81-179 (409)
247 TIGR03597 GTPase_YqeH ribosome 99.1 1.6E-10 3.5E-15 77.0 4.8 97 5-109 50-150 (360)
248 PRK12288 GTPase RsgA; Reviewed 99.1 1.2E-09 2.6E-14 72.5 8.7 89 16-110 118-206 (347)
249 cd01896 DRG The developmentall 99.1 1.4E-09 2.9E-14 68.7 8.5 51 52-112 176-226 (233)
250 COG0486 ThdF Predicted GTPase 99.1 1.3E-09 2.8E-14 73.6 8.6 97 1-111 271-375 (454)
251 PRK00049 elongation factor Tu; 99.1 1.8E-09 4E-14 72.8 9.3 105 1-110 81-201 (396)
252 cd01856 YlqF YlqF. Proteins o 99.1 6.7E-10 1.4E-14 66.9 6.5 97 2-110 2-99 (171)
253 cd01885 EF2 EF2 (for archaea a 99.1 8.5E-10 1.8E-14 69.1 6.9 60 1-65 79-138 (222)
254 cd04170 EF-G_bact Elongation f 99.1 3.1E-09 6.6E-14 68.3 9.5 61 1-66 70-130 (268)
255 PRK12740 elongation factor G; 99.1 4.3E-09 9.2E-14 75.2 11.1 61 1-66 66-126 (668)
256 TIGR02034 CysN sulfate adenyly 99.0 1.3E-09 2.9E-14 73.7 7.7 98 1-102 86-187 (406)
257 TIGR00484 EF-G translation elo 99.0 6.9E-09 1.5E-13 74.4 11.3 61 1-66 81-141 (689)
258 TIGR00503 prfC peptide chain r 99.0 6.9E-09 1.5E-13 72.3 10.6 61 1-66 86-146 (527)
259 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.1E-09 4.6E-14 63.9 6.9 89 15-110 5-93 (157)
260 PLN03127 Elongation factor Tu; 99.0 6E-09 1.3E-13 71.3 9.7 106 1-111 130-251 (447)
261 PRK05124 cysN sulfate adenylyl 99.0 7.8E-10 1.7E-14 76.1 5.0 99 1-103 113-216 (474)
262 cd04167 Snu114p Snu114p subfam 99.0 2.5E-09 5.4E-14 66.6 6.6 60 1-65 77-136 (213)
263 PLN03126 Elongation factor Tu; 99.0 7.8E-09 1.7E-13 71.2 8.9 93 1-98 150-248 (478)
264 KOG1144|consensus 98.9 3.9E-09 8.3E-14 74.9 6.8 102 1-110 546-685 (1064)
265 KOG1707|consensus 98.9 3.1E-09 6.7E-14 73.4 6.1 103 1-109 62-172 (625)
266 COG2262 HflX GTPases [General 98.9 2E-08 4.4E-13 67.0 9.1 87 15-111 268-355 (411)
267 PRK05506 bifunctional sulfate 98.9 4.9E-09 1.1E-13 74.5 6.7 98 1-102 110-211 (632)
268 TIGR03596 GTPase_YlqF ribosome 98.9 4.2E-09 9.1E-14 68.0 5.7 89 10-110 13-101 (276)
269 COG0218 Predicted GTPase [Gene 98.9 1.6E-08 3.4E-13 61.8 7.7 101 5-112 90-197 (200)
270 cd01849 YlqF_related_GTPase Yl 98.9 8E-09 1.7E-13 61.3 6.3 81 20-109 1-82 (155)
271 PRK12739 elongation factor G; 98.9 2.7E-08 5.8E-13 71.5 9.4 61 1-66 79-139 (691)
272 PF00503 G-alpha: G-protein al 98.8 2.9E-09 6.4E-14 71.7 3.9 109 1-109 242-387 (389)
273 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 2E-08 4.3E-13 58.7 6.5 76 14-99 7-84 (141)
274 KOG1423|consensus 98.8 6.2E-08 1.3E-12 62.8 8.3 93 14-112 151-271 (379)
275 PRK09563 rbgA GTPase YlqF; Rev 98.8 9.9E-09 2.1E-13 66.6 4.8 88 11-110 17-104 (287)
276 COG5256 TEF1 Translation elong 98.8 2.1E-08 4.6E-13 67.0 6.0 98 1-102 91-201 (428)
277 PRK00007 elongation factor G; 98.8 1.2E-07 2.7E-12 68.1 9.9 61 1-66 81-141 (693)
278 COG1217 TypA Predicted membran 98.8 4.7E-08 1E-12 66.5 7.2 106 1-111 74-194 (603)
279 COG2895 CysN GTPases - Sulfate 98.7 9.9E-08 2.1E-12 62.9 7.2 95 1-101 92-192 (431)
280 COG0536 Obg Predicted GTPase [ 98.7 1.1E-07 2.4E-12 62.3 6.9 96 12-111 231-332 (369)
281 COG5257 GCD11 Translation init 98.7 1.1E-07 2.3E-12 62.1 6.4 108 1-112 92-202 (415)
282 PRK01889 GTPase RsgA; Reviewed 98.7 3.9E-07 8.6E-12 60.9 9.2 84 16-108 110-193 (356)
283 KOG1490|consensus 98.6 3.8E-08 8.2E-13 67.3 4.3 89 20-110 249-339 (620)
284 PRK13796 GTPase YqeH; Provisio 98.6 1.1E-07 2.4E-12 63.7 6.4 86 17-110 67-157 (365)
285 TIGR00101 ureG urease accessor 98.6 9.9E-08 2.1E-12 58.9 5.7 81 19-113 113-197 (199)
286 PF06858 NOG1: Nucleolar GTP-b 98.6 1.8E-07 3.9E-12 46.0 5.2 43 19-63 14-58 (58)
287 COG4917 EutP Ethanolamine util 98.6 1.3E-07 2.7E-12 53.8 4.9 97 1-110 43-144 (148)
288 COG4108 PrfC Peptide chain rel 98.6 1.1E-06 2.4E-11 59.6 10.1 61 1-66 87-147 (528)
289 COG3276 SelB Selenocysteine-sp 98.6 5.6E-07 1.2E-11 60.7 8.6 106 1-111 56-161 (447)
290 cd01899 Ygr210 Ygr210 subfamil 98.5 2.3E-06 4.9E-11 56.4 9.6 55 51-111 213-268 (318)
291 PRK09435 membrane ATPase/prote 98.5 1.2E-06 2.6E-11 58.0 8.1 99 1-111 155-259 (332)
292 COG0370 FeoB Fe2+ transport sy 98.5 2.2E-06 4.7E-11 60.7 9.0 78 18-110 81-162 (653)
293 PF03029 ATP_bind_1: Conserved 98.4 3.3E-07 7.2E-12 58.1 4.5 108 1-110 97-235 (238)
294 COG1084 Predicted GTPase [Gene 98.4 2.1E-06 4.5E-11 56.2 7.9 83 19-108 248-332 (346)
295 cd04104 p47_IIGP_like p47 (47- 98.4 2.3E-06 5E-11 52.7 7.8 103 1-111 58-183 (197)
296 TIGR00073 hypB hydrogenase acc 98.4 8.7E-07 1.9E-11 55.0 5.6 57 52-111 148-206 (207)
297 TIGR00750 lao LAO/AO transport 98.4 3.1E-06 6.8E-11 55.4 7.6 87 15-110 144-236 (300)
298 PF04670 Gtr1_RagA: Gtr1/RagA 98.3 1.9E-06 4.2E-11 54.4 6.1 108 1-111 54-175 (232)
299 KOG0085|consensus 98.3 1.8E-07 3.8E-12 58.8 0.6 109 1-109 205-346 (359)
300 KOG0099|consensus 98.3 1.2E-06 2.7E-11 55.9 4.2 65 1-65 208-282 (379)
301 KOG0458|consensus 98.3 9.5E-07 2E-11 61.4 3.4 98 1-102 261-372 (603)
302 PTZ00416 elongation factor 2; 98.2 2.5E-06 5.4E-11 62.7 5.5 60 1-65 98-157 (836)
303 TIGR00490 aEF-2 translation el 98.2 3.5E-06 7.5E-11 61.1 6.1 61 1-66 92-152 (720)
304 PLN00116 translation elongatio 98.2 2.9E-06 6.3E-11 62.4 5.5 60 1-65 104-163 (843)
305 COG1162 Predicted GTPases [Gen 98.2 7.2E-06 1.6E-10 53.3 6.6 95 9-110 70-165 (301)
306 PRK07560 elongation factor EF- 98.2 4.2E-06 9E-11 60.8 5.3 60 1-65 93-152 (731)
307 KOG1191|consensus 98.2 1.4E-05 3.1E-10 54.9 7.2 110 1-110 322-448 (531)
308 COG5258 GTPBP1 GTPase [General 98.1 2.3E-05 4.9E-10 52.7 7.9 101 1-106 207-333 (527)
309 cd01882 BMS1 Bms1. Bms1 is an 98.1 1.2E-05 2.5E-10 50.7 5.2 87 1-97 89-181 (225)
310 COG0050 TufB GTPases - transla 98.0 2.6E-05 5.6E-10 50.8 6.4 106 1-111 81-200 (394)
311 KOG0461|consensus 98.0 2.7E-05 5.8E-10 51.8 5.8 105 1-111 76-192 (522)
312 COG0480 FusA Translation elong 97.9 6.3E-05 1.4E-09 54.3 6.7 73 1-78 82-157 (697)
313 KOG0466|consensus 97.8 1.6E-05 3.4E-10 52.1 3.0 108 1-112 131-241 (466)
314 PF01926 MMR_HSR1: 50S ribosom 97.8 0.00014 3E-09 40.9 6.5 41 15-61 76-116 (116)
315 COG1703 ArgK Putative periplas 97.8 9.9E-05 2.1E-09 48.1 6.2 86 17-111 163-253 (323)
316 cd01850 CDC_Septin CDC/Septin. 97.8 2.5E-05 5.4E-10 50.7 3.6 44 18-66 114-157 (276)
317 smart00053 DYNc Dynamin, GTPas 97.8 0.00055 1.2E-08 43.6 9.4 54 10-67 153-207 (240)
318 KOG0460|consensus 97.8 0.00011 2.3E-09 48.9 6.2 91 1-95 123-218 (449)
319 KOG0468|consensus 97.8 5.5E-05 1.2E-09 54.1 5.2 59 1-64 203-261 (971)
320 KOG1707|consensus 97.8 0.00028 6.1E-09 49.6 8.3 83 17-110 494-581 (625)
321 PF03308 ArgK: ArgK protein; 97.8 1.6E-05 3.5E-10 50.8 2.2 86 16-110 140-228 (266)
322 PRK09602 translation-associate 97.8 0.00037 8.1E-09 47.5 8.7 54 51-111 216-270 (396)
323 KOG1424|consensus 97.8 5.8E-05 1.2E-09 52.3 4.8 80 6-96 163-244 (562)
324 PF00350 Dynamin_N: Dynamin fa 97.7 0.0001 2.2E-09 44.0 4.5 58 1-62 107-168 (168)
325 COG0378 HypB Ni2+-binding GTPa 97.7 6E-05 1.3E-09 46.2 3.5 80 19-111 118-200 (202)
326 smart00010 small_GTPase Small 97.6 7.5E-05 1.6E-09 42.1 3.4 75 13-101 41-115 (124)
327 PRK10463 hydrogenase nickel in 97.6 8.1E-05 1.8E-09 48.5 3.9 56 52-110 230-287 (290)
328 cd04178 Nucleostemin_like Nucl 97.6 7.6E-05 1.7E-09 45.2 3.0 44 20-67 1-45 (172)
329 COG3596 Predicted GTPase [Gene 97.5 0.0012 2.5E-08 42.8 7.6 108 1-112 93-222 (296)
330 cd01852 AIG1 AIG1 (avrRpt2-ind 97.4 0.00073 1.6E-08 41.5 6.0 95 15-111 80-183 (196)
331 COG1161 Predicted GTPases [Gen 97.4 0.00042 9E-09 46.0 4.7 87 7-104 23-109 (322)
332 KOG1532|consensus 97.4 0.0021 4.6E-08 41.8 7.5 88 19-109 148-261 (366)
333 KOG0465|consensus 97.3 0.0013 2.8E-08 46.8 6.5 61 1-66 110-170 (721)
334 KOG1143|consensus 97.1 0.0029 6.4E-08 42.9 6.4 101 1-106 255-382 (591)
335 COG1163 DRG Predicted GTPase [ 97.1 0.0016 3.4E-08 43.2 4.8 52 51-112 238-289 (365)
336 KOG2484|consensus 97.0 0.0027 5.8E-08 43.1 5.3 63 10-77 138-202 (435)
337 KOG0463|consensus 96.9 0.0023 5E-08 43.5 4.9 101 1-106 225-352 (641)
338 KOG3886|consensus 96.8 0.01 2.2E-07 37.8 6.4 65 1-67 59-131 (295)
339 TIGR02836 spore_IV_A stage IV 96.6 0.032 6.9E-07 38.7 8.2 90 13-111 138-236 (492)
340 cd03110 Fer4_NifH_child This p 96.5 0.031 6.7E-07 33.7 7.5 59 1-66 99-157 (179)
341 KOG1954|consensus 96.3 0.015 3.2E-07 39.6 5.5 71 1-78 153-234 (532)
342 KOG0448|consensus 96.2 0.04 8.6E-07 40.1 7.3 61 1-66 212-275 (749)
343 KOG0705|consensus 96.2 0.0059 1.3E-07 43.3 3.2 95 13-110 90-187 (749)
344 KOG0467|consensus 96.1 0.015 3.2E-07 42.7 4.9 58 1-63 78-135 (887)
345 KOG3905|consensus 95.9 0.009 2E-07 39.9 2.8 60 52-111 222-289 (473)
346 KOG0464|consensus 95.8 0.0042 9E-08 42.8 1.0 74 1-79 108-184 (753)
347 KOG0459|consensus 95.6 0.013 2.8E-07 40.1 2.9 101 1-104 163-278 (501)
348 COG3640 CooC CO dehydrogenase 95.6 0.048 1E-06 34.8 5.1 46 15-65 152-198 (255)
349 KOG2485|consensus 95.4 0.033 7.2E-07 36.9 4.1 60 12-78 40-99 (335)
350 KOG2423|consensus 95.2 0.13 2.9E-06 35.5 6.4 86 15-108 210-296 (572)
351 COG1149 MinD superfamily P-loo 95.1 0.17 3.8E-06 33.0 6.6 61 14-80 181-241 (284)
352 cd03111 CpaE_like This protein 94.9 0.25 5.4E-06 27.3 6.2 58 1-61 49-106 (106)
353 cd02038 FleN-like FleN is a me 94.7 0.22 4.7E-06 29.0 6.0 59 1-64 51-109 (139)
354 COG4963 CpaE Flp pilus assembl 94.6 0.6 1.3E-05 31.8 8.4 72 9-82 230-301 (366)
355 KOG0447|consensus 94.6 0.55 1.2E-05 34.0 8.4 71 9-82 439-511 (980)
356 TIGR00991 3a0901s02IAP34 GTP-b 94.5 0.36 7.8E-06 32.2 7.0 63 1-65 92-166 (313)
357 KOG2486|consensus 94.4 0.013 2.7E-07 38.3 0.2 96 7-109 205-313 (320)
358 cd03112 CobW_like The function 94.3 0.14 3E-06 30.5 4.6 40 18-64 118-158 (158)
359 PF05783 DLIC: Dynein light in 93.7 0.055 1.2E-06 38.0 2.3 60 52-111 196-263 (472)
360 KOG0410|consensus 93.6 0.14 3.1E-06 34.4 3.9 81 15-109 254-338 (410)
361 PF14331 ImcF-related_N: ImcF- 93.6 0.4 8.6E-06 31.2 5.9 48 18-66 25-83 (266)
362 COG0523 Putative GTPases (G3E 93.3 0.54 1.2E-05 31.6 6.3 67 19-94 117-184 (323)
363 PF10087 DUF2325: Uncharacteri 93.1 0.79 1.7E-05 24.9 5.9 21 11-31 41-61 (97)
364 cd02036 MinD Bacterial cell di 92.9 1.2 2.6E-05 26.6 7.9 60 1-66 69-128 (179)
365 cd03114 ArgK-like The function 92.6 0.44 9.5E-06 28.1 4.7 51 1-63 98-148 (148)
366 TIGR00064 ftsY signal recognit 92.4 2 4.4E-05 28.1 8.6 70 18-104 190-260 (272)
367 cd01853 Toc34_like Toc34-like 92.3 0.93 2E-05 29.3 6.2 64 1-66 85-163 (249)
368 KOG3887|consensus 91.5 2.7 5.9E-05 27.5 9.0 106 1-110 81-200 (347)
369 PF04548 AIG1: AIG1 family; I 91.4 0.73 1.6E-05 28.8 5.0 55 15-71 80-135 (212)
370 KOG0469|consensus 90.7 0.37 8E-06 34.5 3.4 59 1-64 104-162 (842)
371 TIGR03371 cellulose_yhjQ cellu 89.2 2.5 5.5E-05 26.7 6.1 62 1-66 121-182 (246)
372 PRK10416 signal recognition pa 88.4 5.8 0.00013 26.7 8.3 70 18-104 232-302 (318)
373 PRK14974 cell division protein 88.2 6.2 0.00014 26.8 8.0 88 1-105 229-323 (336)
374 PF05049 IIGP: Interferon-indu 87.8 3.4 7.4E-05 28.5 6.2 87 16-111 112-217 (376)
375 TIGR03348 VI_IcmF type VI secr 87.7 0.96 2.1E-05 35.6 4.0 48 18-66 201-257 (1169)
376 PF00735 Septin: Septin; Inte 87.5 1.3 2.9E-05 29.1 4.1 44 18-66 113-156 (281)
377 cd02117 NifH_like This family 86.6 3.5 7.5E-05 25.7 5.5 47 18-65 141-188 (212)
378 CHL00175 minD septum-site dete 85.8 5.2 0.00011 26.0 6.2 58 1-64 133-190 (281)
379 PF02492 cobW: CobW/HypB/UreG, 85.2 1.4 3.1E-05 26.7 3.2 44 18-67 113-156 (178)
380 TIGR01968 minD_bact septum sit 84.4 6.8 0.00015 24.9 6.2 58 1-64 118-175 (261)
381 PF01656 CbiA: CobQ/CobB/MinD/ 84.0 2.9 6.2E-05 25.2 4.2 53 12-66 110-162 (195)
382 cd02032 Bchl_like This family 83.9 4.5 9.7E-05 26.1 5.2 48 16-64 136-184 (267)
383 TIGR01425 SRP54_euk signal rec 83.9 3.9 8.5E-05 28.7 5.1 58 1-65 189-252 (429)
384 PRK13849 putative crown gall t 82.9 6.7 0.00014 25.0 5.6 60 1-63 90-151 (231)
385 PF02662 FlpD: Methyl-viologen 82.6 7.1 0.00015 22.4 5.7 30 82-111 91-120 (124)
386 KOG1486|consensus 81.9 6.4 0.00014 26.0 5.1 51 52-112 238-288 (364)
387 PRK11537 putative GTP-binding 81.9 4.1 8.9E-05 27.3 4.5 41 19-66 123-164 (318)
388 TIGR01969 minD_arch cell divis 81.6 11 0.00023 23.8 6.5 58 1-65 115-173 (251)
389 cd02037 MRP-like MRP (Multiple 81.1 9.3 0.0002 22.8 8.7 44 17-64 90-133 (169)
390 PRK13505 formate--tetrahydrofo 80.9 14 0.0003 27.0 6.9 28 35-66 359-386 (557)
391 PHA02518 ParA-like protein; Pr 80.7 11 0.00023 23.2 7.0 59 1-64 83-145 (211)
392 CHL00072 chlL photochlorophyll 80.5 10 0.00022 25.1 6.0 48 16-64 136-184 (290)
393 PRK13185 chlL protochlorophyll 79.3 7.6 0.00016 25.1 5.0 47 16-63 138-185 (270)
394 COG0012 Predicted GTPase, prob 79.0 3.1 6.7E-05 28.6 3.2 18 50-67 204-221 (372)
395 PTZ00258 GTP-binding protein; 77.9 5.6 0.00012 27.6 4.2 29 1-29 91-126 (390)
396 PRK10818 cell division inhibit 77.7 13 0.00028 24.0 5.8 62 1-65 120-186 (270)
397 PF07015 VirC1: VirC1 protein; 77.1 13 0.00029 23.9 5.5 60 1-63 90-151 (231)
398 PRK13660 hypothetical protein; 77.0 14 0.0003 22.9 5.4 48 8-58 119-166 (182)
399 PTZ00258 GTP-binding protein; 76.2 6.9 0.00015 27.2 4.3 43 51-97 219-265 (390)
400 KOG1487|consensus 76.1 6.3 0.00014 26.2 3.9 83 11-112 199-281 (358)
401 cd01900 YchF YchF subfamily. 75.6 3 6.4E-05 27.4 2.4 29 1-29 68-103 (274)
402 TIGR01007 eps_fam capsular exo 75.2 17 0.00036 22.4 7.0 47 15-65 147-193 (204)
403 PRK00771 signal recognition pa 74.9 15 0.00032 26.0 5.7 58 1-66 182-246 (437)
404 PF03193 DUF258: Protein of un 74.4 5.1 0.00011 24.2 3.0 26 85-110 11-36 (161)
405 cd03115 SRP The signal recogni 73.6 17 0.00036 21.7 6.3 42 18-66 112-153 (173)
406 PF09547 Spore_IV_A: Stage IV 73.5 22 0.00047 25.4 6.1 82 21-111 148-236 (492)
407 TIGR03815 CpaE_hom_Actino heli 73.4 24 0.00053 23.5 8.0 72 1-80 211-282 (322)
408 TIGR02475 CobW cobalamin biosy 73.1 10 0.00022 25.8 4.5 20 56-75 177-196 (341)
409 cd02042 ParA ParA and ParB of 72.6 13 0.00028 20.0 5.7 39 1-42 46-84 (104)
410 PF11111 CENP-M: Centromere pr 72.2 20 0.00044 22.1 7.3 88 18-111 64-152 (176)
411 KOG4273|consensus 71.9 4.1 8.9E-05 26.8 2.3 43 20-66 80-123 (418)
412 PF05014 Nuc_deoxyrib_tr: Nucl 71.6 15 0.00033 20.4 5.4 45 14-64 57-101 (113)
413 KOG3929|consensus 71.2 10 0.00022 25.2 3.9 15 52-66 190-204 (363)
414 TIGR00993 3a0901s04IAP86 chlor 70.7 16 0.00035 27.6 5.2 64 1-66 172-250 (763)
415 TIGR01281 DPOR_bchL light-inde 70.5 17 0.00038 23.4 5.0 49 16-65 136-185 (268)
416 PF03709 OKR_DC_1_N: Orn/Lys/A 69.4 18 0.00039 20.3 4.9 43 17-62 35-77 (115)
417 TIGR00959 ffh signal recogniti 69.1 20 0.00044 25.3 5.3 57 1-64 189-251 (428)
418 KOG1249|consensus 68.3 13 0.00028 27.1 4.2 85 19-110 111-209 (572)
419 PF08438 MMR_HSR1_C: GTPase of 67.5 2.6 5.7E-05 23.7 0.7 9 58-66 1-9 (109)
420 cd02040 NifH NifH gene encodes 67.2 24 0.00052 22.6 5.2 44 18-62 141-185 (270)
421 COG5019 CDC3 Septin family pro 65.4 22 0.00047 24.6 4.7 43 18-66 133-176 (373)
422 PRK09601 GTP-binding protein Y 63.2 10 0.00023 26.1 3.0 29 1-29 72-107 (364)
423 COG0552 FtsY Signal recognitio 62.5 41 0.0009 23.1 5.6 86 1-104 228-327 (340)
424 PRK12727 flagellar biosynthesi 62.1 45 0.00098 24.6 6.0 40 20-66 459-498 (559)
425 COG1163 DRG Predicted GTPase [ 60.3 19 0.00042 24.7 3.7 33 12-44 134-167 (365)
426 PF00448 SRP54: SRP54-type pro 60.0 28 0.0006 21.6 4.3 58 1-65 90-153 (196)
427 PF14606 Lipase_GDSL_3: GDSL-l 59.9 39 0.00084 20.9 4.9 55 3-59 42-100 (178)
428 PRK06731 flhF flagellar biosyn 59.2 49 0.0011 21.8 5.5 59 1-66 161-225 (270)
429 COG1419 FlhF Flagellar GTP-bin 58.5 37 0.0008 23.9 4.9 57 1-65 288-351 (407)
430 cd07393 MPP_DR1119 Deinococcus 57.5 33 0.00071 21.8 4.4 44 15-61 38-81 (232)
431 PRK11889 flhF flagellar biosyn 55.5 48 0.001 23.6 5.1 59 1-66 327-391 (436)
432 PRK05703 flhF flagellar biosyn 55.3 72 0.0016 22.6 6.3 59 1-66 306-371 (424)
433 cd02035 ArsA ArsA ATPase funct 54.8 51 0.0011 20.6 5.8 43 19-65 141-183 (217)
434 cd01983 Fer4_NifH The Fer4_Nif 53.4 30 0.00066 17.7 5.7 18 13-30 53-70 (99)
435 KOG2655|consensus 53.4 33 0.00071 23.8 4.0 43 18-66 129-172 (366)
436 COG0541 Ffh Signal recognition 53.1 78 0.0017 22.7 5.8 31 1-31 189-225 (451)
437 PRK13556 azoreductase; Provisi 52.6 55 0.0012 20.4 4.8 48 14-61 85-144 (208)
438 PRK12726 flagellar biosynthesi 52.0 45 0.00098 23.5 4.6 58 1-66 292-356 (407)
439 PF13676 TIR_2: TIR domain; PD 50.6 13 0.00027 20.0 1.6 46 9-59 40-85 (102)
440 TIGR01287 nifH nitrogenase iro 50.4 48 0.001 21.5 4.4 44 18-62 140-184 (275)
441 TIGR01005 eps_transp_fam exopo 50.1 1.1E+02 0.0023 23.3 6.6 47 15-65 675-721 (754)
442 PF11185 DUF2971: Protein of u 50.0 17 0.00037 18.6 2.0 17 11-27 1-17 (90)
443 PF13401 AAA_22: AAA domain; P 49.7 45 0.00097 18.5 4.2 46 13-61 80-125 (131)
444 TIGR03566 FMN_reduc_MsuE FMN r 48.8 53 0.0012 19.7 4.2 47 14-61 64-110 (174)
445 COG4502 5'(3')-deoxyribonucleo 48.7 58 0.0013 19.6 5.2 42 19-62 84-125 (180)
446 KOG2743|consensus 47.2 90 0.002 21.5 5.2 47 19-69 178-228 (391)
447 COG1010 CobJ Precorrin-3B meth 46.8 81 0.0017 20.6 5.4 44 15-62 151-197 (249)
448 PF06908 DUF1273: Protein of u 46.2 38 0.00082 20.8 3.2 19 13-31 124-142 (177)
449 PRK10867 signal recognition pa 46.1 83 0.0018 22.4 5.2 57 1-64 190-252 (433)
450 PRK13555 azoreductase; Provisi 45.5 76 0.0017 20.0 5.4 49 13-61 84-144 (208)
451 PRK14722 flhF flagellar biosyn 45.3 1E+02 0.0023 21.5 6.0 66 1-66 222-295 (374)
452 PF03358 FMN_red: NADPH-depend 43.2 66 0.0014 18.6 4.9 49 14-62 66-116 (152)
453 PRK06242 flavodoxin; Provision 43.0 59 0.0013 18.8 3.7 44 16-62 41-84 (150)
454 COG3523 IcmF Type VI protein s 42.0 42 0.0009 27.2 3.5 49 17-66 213-270 (1188)
455 PRK13235 nifH nitrogenase redu 41.9 96 0.0021 20.1 4.9 45 18-63 142-187 (274)
456 PF14784 ECIST_Cterm: C-termin 40.8 74 0.0016 18.5 4.3 40 18-57 83-123 (126)
457 PF08937 DUF1863: MTH538 TIR-l 39.7 73 0.0016 18.1 4.9 46 9-59 61-106 (130)
458 COG1908 FrhD Coenzyme F420-red 39.4 36 0.00077 19.7 2.2 55 54-111 56-121 (132)
459 TIGR03567 FMN_reduc_SsuE FMN r 38.8 82 0.0018 18.9 3.9 47 14-61 61-107 (171)
460 PRK10569 NAD(P)H-dependent FMN 38.6 81 0.0018 19.5 3.9 47 13-61 61-108 (191)
461 PF09005 DUF1897: Domain of un 37.8 15 0.00032 16.5 0.4 16 3-18 6-21 (38)
462 cd07388 MPP_Tt1561 Thermus the 37.3 1.1E+02 0.0024 19.6 5.0 44 17-64 30-74 (224)
463 PF09827 CRISPR_Cas2: CRISPR a 37.0 47 0.001 17.0 2.4 25 21-45 3-27 (78)
464 PF07894 DUF1669: Protein of u 36.9 1.3E+02 0.0028 20.2 6.7 67 4-80 131-199 (284)
465 PF01268 FTHFS: Formate--tetra 36.9 1.5E+02 0.0033 22.0 5.4 65 37-110 360-426 (557)
466 PRK12723 flagellar biosynthesi 36.3 1.5E+02 0.0033 20.8 6.0 59 1-66 261-326 (388)
467 COG4474 Uncharacterized protei 36.3 1.1E+02 0.0023 19.0 5.1 28 12-39 123-150 (180)
468 PRK13230 nitrogenase reductase 35.5 97 0.0021 20.2 4.1 27 17-44 140-166 (279)
469 PF07693 KAP_NTPase: KAP famil 33.8 1E+02 0.0023 20.3 4.1 43 18-60 170-212 (325)
470 COG0052 RpsB Ribosomal protein 33.6 58 0.0012 21.4 2.7 69 9-83 24-93 (252)
471 PRK00170 azoreductase; Reviewe 33.5 1.2E+02 0.0025 18.6 5.1 49 14-62 82-142 (201)
472 cd07379 MPP_239FB Homo sapiens 33.3 96 0.0021 17.6 4.3 17 17-33 18-34 (135)
473 PRK13695 putative NTPase; Prov 33.3 1.1E+02 0.0024 18.2 8.9 78 14-111 92-172 (174)
474 TIGR02016 BchX chlorophyllide 33.2 1.5E+02 0.0032 19.8 5.7 59 18-80 147-208 (296)
475 PRK13233 nifH nitrogenase redu 32.8 1.2E+02 0.0026 19.6 4.3 44 18-62 143-187 (275)
476 TIGR03677 rpl7ae 50S ribosomal 32.5 56 0.0012 18.5 2.3 14 51-64 68-81 (117)
477 PF00072 Response_reg: Respons 32.4 83 0.0018 16.6 3.4 13 51-63 70-82 (112)
478 PRK06756 flavodoxin; Provision 32.1 1.1E+02 0.0023 17.8 4.7 45 15-60 46-91 (148)
479 COG3613 Nucleoside 2-deoxyribo 32.0 66 0.0014 19.8 2.7 44 14-61 64-107 (172)
480 PRK07116 flavodoxin; Provision 31.9 1.1E+02 0.0025 18.0 7.6 60 15-78 73-132 (160)
481 PF10438 Cyc-maltodext_C: Cycl 31.9 27 0.00059 18.4 0.9 28 51-78 19-46 (78)
482 PRK13234 nifH nitrogenase redu 31.5 1.5E+02 0.0033 19.6 4.6 44 18-62 144-188 (295)
483 PRK11670 antiporter inner memb 31.3 1.8E+02 0.0039 20.2 6.7 43 18-65 239-282 (369)
484 TIGR03029 EpsG chain length de 31.3 1.5E+02 0.0032 19.2 6.6 27 17-44 234-260 (274)
485 PRK13507 formate--tetrahydrofo 31.2 2.3E+02 0.0049 21.3 6.3 16 51-66 400-415 (587)
486 PF05763 DUF835: Protein of un 31.1 1.2E+02 0.0025 17.8 3.9 51 12-62 67-121 (136)
487 TIGR00092 GTP-binding protein 30.3 71 0.0015 22.2 2.9 21 9-29 88-108 (368)
488 COG1358 RPL8A Ribosomal protei 30.3 67 0.0015 18.3 2.4 40 18-64 43-82 (116)
489 PF03215 Rad17: Rad17 cell cyc 30.1 2E+02 0.0043 21.1 5.2 85 20-108 133-226 (519)
490 PF04317 DUF463: YcjX-like fam 30.1 2.1E+02 0.0045 20.7 5.1 57 12-68 249-322 (443)
491 PF13651 EcoRI_methylase: Aden 29.7 1.9E+02 0.0042 20.0 5.1 41 13-63 130-170 (336)
492 PRK04930 glutathione-regulated 29.7 1.4E+02 0.0031 18.5 5.0 47 15-61 58-112 (184)
493 PRK00871 glutathione-regulated 29.6 1.4E+02 0.003 18.3 4.8 50 14-63 51-108 (176)
494 TIGR02260 benz_CoA_red_B benzo 29.6 1.5E+02 0.0032 21.0 4.4 9 18-26 350-358 (413)
495 cd02067 B12-binding B12 bindin 29.5 1.1E+02 0.0023 17.0 4.7 41 18-61 50-90 (119)
496 PRK14721 flhF flagellar biosyn 29.0 2E+02 0.0042 20.6 4.9 59 1-66 276-340 (420)
497 TIGR02690 resist_ArsH arsenica 28.9 1.6E+02 0.0035 18.8 4.2 49 12-60 84-136 (219)
498 COG0431 Predicted flavoprotein 28.8 1.1E+02 0.0024 18.7 3.4 49 12-64 61-112 (184)
499 PRK12724 flagellar biosynthesi 28.4 2.3E+02 0.0049 20.4 5.5 39 20-65 334-372 (432)
500 COG0252 AnsB L-asparaginase/ar 27.8 2E+02 0.0043 20.0 4.7 39 19-64 101-139 (351)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=1.1e-25 Score=136.55 Aligned_cols=111 Identities=67% Similarity=1.236 Sum_probs=96.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|++++|++|+|+|.+++.++.....++..+.......++|+++++||+|+++....+++.+.++..
T Consensus 67 D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~ 146 (181)
T PLN00223 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (181)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999998999888888887655444679999999999998877778888888766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++++||++|+|+.++|+||...+
T Consensus 147 ~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 5555677788999999999999999998765
No 2
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=3.7e-25 Score=133.66 Aligned_cols=111 Identities=79% Similarity=1.359 Sum_probs=96.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|+++++++|+|+|.+++.+++....|+..+.+.....++|+++++||+|+.+..+..++.+.++..
T Consensus 63 D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 142 (175)
T smart00177 63 DVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLH 142 (175)
T ss_pred ECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999999999999998888665434578999999999998766777788877766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......+.++++||++|.|++++|+||...+
T Consensus 143 ~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 143 SIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 5556677888999999999999999998765
No 3
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=3.2e-25 Score=133.13 Aligned_cols=109 Identities=94% Similarity=1.520 Sum_probs=93.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+.++.......++|+++++||+|+.+..+.+++.+..+..
T Consensus 59 Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 138 (168)
T cd04149 59 DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLT 138 (168)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCC
Confidence 89999999999999999999999999999988999888888888765434678999999999997666667777766655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++||++|.|++++|+||.+
T Consensus 139 ~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 139 RIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred ccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 55556678999999999999999999975
No 4
>KOG0084|consensus
Probab=99.93 E-value=1.5e-26 Score=138.14 Aligned_cols=106 Identities=20% Similarity=0.342 Sum_probs=88.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||+||+||+++..+||++||+||+|||+++.+||+....|+.++.+.. ..++|.++||||+|+.+.... .+.++.+.
T Consensus 64 DTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa- 141 (205)
T KOG0084|consen 64 DTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFA- 141 (205)
T ss_pred eccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHH-
Confidence 899999999999999999999999999999999999999999997764 366899999999999775321 22233333
Q ss_pred CccCCCCeE-EEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWY-VQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++ ++++||+++.+++++|..+...+
T Consensus 142 ---~~~~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 142 ---DELGIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ---HhcCCcceeecccCCccCHHHHHHHHHHHH
Confidence 223445 88999999999999999988765
No 5
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.93 E-value=7.3e-25 Score=130.52 Aligned_cols=109 Identities=67% Similarity=1.260 Sum_probs=92.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..+|..|++++|++++|+|.+++.+++....|+..+.......+.|+++++||+|+.+.....++.+.++..
T Consensus 50 D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 129 (159)
T cd04150 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLH 129 (159)
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999988999988888887654334568999999999997655566776766655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....+.+.++++||++|.|++++|+||.+
T Consensus 130 ~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 130 SLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred ccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 55556778899999999999999999975
No 6
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=2.6e-24 Score=130.68 Aligned_cols=111 Identities=66% Similarity=1.216 Sum_probs=95.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|+.++|++|+|+|.+++.+++....++..+.......+.|+++++||.|+++.....++...++..
T Consensus 67 D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~ 146 (182)
T PTZ00133 67 DVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLH 146 (182)
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCC
Confidence 89999999999999999999999999999988999888888877654334578999999999997766667777777766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......++++++||++|.|++++|+||.+.+
T Consensus 147 ~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 147 SVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred cccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 5656678889999999999999999998754
No 7
>KOG0078|consensus
Probab=99.92 E-value=1.5e-25 Score=135.33 Aligned_cols=108 Identities=21% Similarity=0.353 Sum_probs=89.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+||++|+.+...|+.+|+++++|||+++..+++....|++.+.++. ..++|.++||||+|+..... +....+..
T Consensus 67 DtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~---V~~e~ge~ 142 (207)
T KOG0078|consen 67 DTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKRQ---VSKERGEA 142 (207)
T ss_pred EcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeecccccccccc---ccHHHHHH
Confidence 899999999999999999999999999999999999999999997764 35899999999999976322 22222222
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++|+||++|.||.+.|-.|++.+.
T Consensus 143 lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 143 LAREYGIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHhCCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 22234567889999999999999999987653
No 8
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.92 E-value=7e-24 Score=128.12 Aligned_cols=111 Identities=50% Similarity=0.942 Sum_probs=101.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|+..++.+|+.|+++++++|||+|.+++..+......+..+...+...++|+++++||+|+++..+..++.+.+...
T Consensus 64 d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~ 143 (175)
T PF00025_consen 64 DLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLE 143 (175)
T ss_dssp EESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGG
T ss_pred eccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhh
Confidence 67999999999999999999999999999999999999999999887767889999999999999888899998888877
Q ss_pred ccC-CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIR-DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~-~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+. ...+.++.|||.+|+|+.+.++||.+++
T Consensus 144 ~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 144 KLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp GTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 665 6889999999999999999999998764
No 9
>KOG0092|consensus
Probab=99.92 E-value=4.5e-25 Score=131.45 Aligned_cols=106 Identities=21% Similarity=0.337 Sum_probs=88.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|||||.++-+-||.+|+++|+|||+++.+||.....|++++.+... +++-+.++|||+|+.+. ...++...
T Consensus 60 DTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~--- 135 (200)
T KOG0092|consen 60 DTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQA--- 135 (200)
T ss_pred EcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHH---
Confidence 8999999999999999999999999999999999999999999976543 77888999999999762 23322221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+....+..++++||+++.|++++|..+.+.+.
T Consensus 136 --yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 136 --YAESQGLLFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred --HHHhcCCEEEEEecccccCHHHHHHHHHHhcc
Confidence 22235567999999999999999999988764
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.92 E-value=1.2e-24 Score=134.00 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|+++|+.++..|+++||++|+|||++++.+++....|+..+.+. ...+.|+++|+||+|+.+.. ...+. +.+.
T Consensus 55 DtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~-~~~a 132 (202)
T cd04120 55 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQG-EKFA 132 (202)
T ss_pred eCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999999999877543 23578999999999986432 22221 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ..++.+++|||++|.|++++|+++++.+
T Consensus 133 ~~---~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 133 QQ---ITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred Hh---cCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 11 1246799999999999999999998754
No 11
>KOG0070|consensus
Probab=99.91 E-value=1e-23 Score=125.05 Aligned_cols=112 Identities=60% Similarity=1.145 Sum_probs=105.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++||++++++|++|+++++++|||+|.+++.++.+....+..+..++...+.|+++.+||.|++++.+..++.+.+++.
T Consensus 67 DvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~ 146 (181)
T KOG0070|consen 67 DVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLH 146 (181)
T ss_pred ecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhh
Confidence 89999999999999999999999999999999999999999999888777899999999999999999999999999998
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+....|.+..|||.+|+|+.+.++|+...+.
T Consensus 147 ~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 147 SLRSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ccCCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 88889999999999999999999999987764
No 12
>KOG0094|consensus
Probab=99.91 E-value=2.3e-24 Score=128.77 Aligned_cols=108 Identities=20% Similarity=0.359 Sum_probs=91.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|||||+.+...|+.++.++|+|||.++..+|+.+.+|++.+...+...+.-+++||||.||.++ .++....+..
T Consensus 77 DTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~ 153 (221)
T KOG0094|consen 77 DTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGER 153 (221)
T ss_pred ecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHH
Confidence 8999999999999999999999999999999999999999999998877667889999999999774 3443333333
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+..++++||+.|.|+..+|..+...+
T Consensus 154 kAkel~a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 154 KAKELNAEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred HHHHhCcEEEEecccCCCCHHHHHHHHHHhc
Confidence 3333455789999999999999999987654
No 13
>KOG0075|consensus
Probab=99.91 E-value=1e-23 Score=121.04 Aligned_cols=112 Identities=31% Similarity=0.644 Sum_probs=105.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|.|||.+|+++|+.|+.++++++||+|+++++.++.....+..++..+...++|+++.+||.|++++.+..++.+..++.
T Consensus 71 D~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~ 150 (186)
T KOG0075|consen 71 DLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLS 150 (186)
T ss_pred ecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcc
Confidence 78999999999999999999999999999999999999999999888888999999999999999999999999999988
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+..+.+-+|.+|++...+++-+.+||+++.+
T Consensus 151 sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 151 SITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred ccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 88888999999999999999999999998754
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.91 E-value=1.4e-24 Score=132.55 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=86.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|+++|+.+++.|++++|++++|||++++.+++.+..|+.++.+.. ++.|+++++||.|+... .+..+... +.
T Consensus 61 Dt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~-~a 137 (189)
T cd04121 61 DTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQA-YA 137 (189)
T ss_pred eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHH-HH
Confidence 899999999999999999999999999999999999999999996642 57999999999999653 23322222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+..++++++|||++|.|++++|+++++.+
T Consensus 138 ----~~~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 138 ----ERNGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred ----HHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 23456799999999999999999998754
No 15
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.91 E-value=1.8e-23 Score=125.37 Aligned_cols=109 Identities=33% Similarity=0.650 Sum_probs=93.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|+.++|++++|+|.+++.+++....|+..+.+.....++|+++++||+|+++..+..++.+.+...
T Consensus 49 D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~ 128 (167)
T cd04161 49 DLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLE 128 (167)
T ss_pred ECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcc
Confidence 89999999999999999999999999999988999999999988766444689999999999998877777777776654
Q ss_pred ccC---CCCeEEEeccccCC------CCHHHHHHHHHh
Q psy17510 81 RIR---DRNWYVQPSCATTA------DGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~---~~~~~~~~~sa~~~------~~i~~~~~~l~~ 109 (113)
.+. ...+++++|||++| +|+.+.|+||..
T Consensus 129 ~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 129 KLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 432 24578999999998 899999999975
No 16
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.91 E-value=2.6e-23 Score=124.88 Aligned_cols=111 Identities=50% Similarity=0.963 Sum_probs=91.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..++.++|++++|+|.+++.+++....|+..+.......+.|+++++||+|+.+..+..++.+.....
T Consensus 49 Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 128 (169)
T cd04158 49 DVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLH 128 (169)
T ss_pred ECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999998765444568999999999997666666665544322
Q ss_pred cc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ....+.+++|||++|.|++++|+||.+.+
T Consensus 129 ~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 129 KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred cccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 22 23356788999999999999999998764
No 17
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.91 E-value=3e-23 Score=125.15 Aligned_cols=109 Identities=48% Similarity=0.931 Sum_probs=92.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..+|..+++++|++++|+|.+++.++.....++..+.+.....++|+++++||+|+.+..+.+++.+.++..
T Consensus 65 D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~ 144 (174)
T cd04153 65 DIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLT 144 (174)
T ss_pred ECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999988888888888877665444679999999999997766667777777655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++||+++.|++++|++|.+
T Consensus 145 ~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 145 SIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 44456788999999999999999999975
No 18
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.91 E-value=3.3e-23 Score=124.77 Aligned_cols=109 Identities=45% Similarity=0.911 Sum_probs=91.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|.+++.++.....|+..+.......++|+++++||+|+.+.....++.+.+...
T Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 143 (173)
T cd04154 64 DVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELD 143 (173)
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999988898888888887654444679999999999997765666666655543
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++||++|.|++++|++++.
T Consensus 144 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 144 KISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 33456789999999999999999999875
No 19
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.91 E-value=4.5e-23 Score=122.49 Aligned_cols=109 Identities=48% Similarity=0.980 Sum_probs=88.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|+.+++.++++++|+|.+++.++.....++..+.+.....++|+++++||+|+.+.....++.+.++..
T Consensus 49 Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~ 128 (158)
T cd04151 49 DLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLS 128 (158)
T ss_pred ECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999887777766666665544334579999999999997655556666666544
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++||+++.|+++++++|++
T Consensus 129 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 129 ELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred ccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 44445678999999999999999999975
No 20
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.91 E-value=5.2e-23 Score=122.34 Aligned_cols=110 Identities=45% Similarity=0.814 Sum_probs=89.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
||||+++++.+|..+++++|++++|+|.+++.++.....|+..+.+... ..++|+++++||+|+.+.....++...+.
T Consensus 51 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~ 130 (162)
T cd04157 51 DMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG 130 (162)
T ss_pred ECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC
Confidence 8999999999999999999999999999998888888888887765432 24799999999999976555555665555
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
........++++++||+++.|++++|++|.++
T Consensus 131 ~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~ 162 (162)
T cd04157 131 LENIKDKPWHIFASNALTGEGLDEGVQWLQAQ 162 (162)
T ss_pred CccccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence 44333445779999999999999999999753
No 21
>KOG0071|consensus
Probab=99.91 E-value=3.5e-23 Score=118.06 Aligned_cols=112 Identities=86% Similarity=1.383 Sum_probs=106.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|+++.+.+|++||.++.++|||+|..+++..++..+.+..+.+++++...|+++.+||.|++++.+++++...+.+.
T Consensus 67 dvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe 146 (180)
T KOG0071|consen 67 DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELE 146 (180)
T ss_pred eccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999888999999999999999999999999999988
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.++...|-+..+||.+++|+.+.+.||...++
T Consensus 147 ~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 147 RIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 88899999999999999999999999988764
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.90 E-value=7.7e-24 Score=127.60 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=85.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++++.++..++..+|++++|||++++.+++....|+..+.+.....++|+++++||+|+.+.. +..+. ..+
T Consensus 56 Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~- 133 (172)
T cd04141 56 DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEG-RNL- 133 (172)
T ss_pred eCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHH-HHH-
Confidence 89999999999999999999999999999999999998887777554334679999999999986532 22221 111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+..++++++|||+++.|++++|+++++.+
T Consensus 134 ---a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 134 ---AREFNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ---HHHhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 123457899999999999999999998754
No 23
>PTZ00099 rab6; Provisional
Probab=99.90 E-value=8.1e-24 Score=127.89 Aligned_cols=105 Identities=24% Similarity=0.368 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++++.++..|+.+||++|+|||++++.+++....|+..+.+.. ..+.|+++|+||+|+.+. .+..+....
T Consensus 35 Dt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~e~~~~-- 111 (176)
T PTZ00099 35 DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYEEGMQK-- 111 (176)
T ss_pred ECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCCCHHHHHHH--
Confidence 899999999999999999999999999999999999999999886543 256899999999998642 233222221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....++.+++|||+++.|++++|+++++.+
T Consensus 112 ---~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 112 ---AQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred ---HHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 112345689999999999999999999765
No 24
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=1.3e-22 Score=123.40 Aligned_cols=110 Identities=33% Similarity=0.627 Sum_probs=94.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|+.++|++++|+|.+++.++.....++..+.+.....++|+++++||+|++...+.+++.+.++..
T Consensus 67 D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~ 146 (184)
T smart00178 67 DLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLT 146 (184)
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCC
Confidence 89999999999999999999999999999988888888888887654444678999999999998777888888887754
Q ss_pred ccC-------CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIR-------DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~-------~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
... .+.+.+++|||++++|++++++||..+
T Consensus 147 ~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 147 NTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 321 256789999999999999999999865
No 25
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.90 E-value=2.2e-22 Score=119.57 Aligned_cols=109 Identities=43% Similarity=0.854 Sum_probs=90.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..+|..++.++|++++|+|.+++.++.....|+..+.+.....+.|+++++||+|+.......++...+...
T Consensus 50 D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~ 129 (160)
T cd04156 50 DVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLK 129 (160)
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCc
Confidence 89999999999999999999999999999988888888888888765444679999999999997655666666655433
Q ss_pred cc-CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RI-RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.. ...++++++|||+++.|++++|++|.+
T Consensus 130 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 130 KYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 22 335678999999999999999999865
No 26
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=2e-22 Score=120.59 Aligned_cols=107 Identities=40% Similarity=0.737 Sum_probs=90.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..+++++|++++|+|.+++.++.....|+..+.... .++|+++++||+|+.+.....++.+.....
T Consensus 50 Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 127 (164)
T cd04162 50 EIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELE 127 (164)
T ss_pred ECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCCh
Confidence 899999999999999999999999999999888888888888886542 679999999999998776666666665544
Q ss_pred cc-CCCCeEEEeccccC------CCCHHHHHHHHHh
Q psy17510 81 RI-RDRNWYVQPSCATT------ADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~------~~~i~~~~~~l~~ 109 (113)
.+ ...++++++|||++ ++|++++|+.++.
T Consensus 128 ~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 128 PIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 33 45678899999988 9999999998864
No 27
>KOG0087|consensus
Probab=99.89 E-value=1.3e-23 Score=126.85 Aligned_cols=107 Identities=19% Similarity=0.366 Sum_probs=87.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+||+||++....||++|.+.++|||+++..+|+...+|+++++.+.. +++++++|+||+||..... +...-+..
T Consensus 69 DTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lra---V~te~~k~ 144 (222)
T KOG0087|consen 69 DTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRA---VPTEDGKA 144 (222)
T ss_pred cccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccc---cchhhhHh
Confidence 8999999999999999999999999999999999999999999988754 6899999999999865221 11111212
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+++++++||+++.++++.|..+...+
T Consensus 145 ~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 145 FAEKEGLFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred HHHhcCceEEEecccccccHHHHHHHHHHHH
Confidence 2223455688999999999999998877654
No 28
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.89 E-value=1.3e-22 Score=124.77 Aligned_cols=103 Identities=22% Similarity=0.290 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||+|+++|+.++..|+.+++++|+|||++++.+++....|+.++.+. ..++|+++|+||+|+.... ..+.. +
T Consensus 50 Dt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~---- 122 (200)
T smart00176 50 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKAKSI-T---- 122 (200)
T ss_pred ECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCCHHHH-H----
Confidence 89999999999999999999999999999999999999999999764 2579999999999985422 22211 1
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....++++++|||+++.|+.++|+++++.+
T Consensus 123 -~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 123 -FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1123467899999999999999999998754
No 29
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.89 E-value=1.5e-22 Score=123.80 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=83.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG- 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~- 78 (113)
||+|+++|+.++..|+.++|++|+|||++++.+++... .|...+... ..+.|+++|+||.|+.+.....+......
T Consensus 57 Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 134 (191)
T cd01875 57 DTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQ 134 (191)
T ss_pred ECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccC
Confidence 89999999999999999999999999999999999986 587777543 25799999999999965322111111111
Q ss_pred --------CCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 --------LTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 --------~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......+ +++++|||++|.|++++|+++++.+
T Consensus 135 ~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 135 APITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 01111223 5899999999999999999998754
No 30
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.89 E-value=2.3e-23 Score=125.92 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-------HH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKP-------HE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-------~~ 72 (113)
||+|+++|+.++..|+.+++++|+|||.+++.+++.. ..|+..+.+.. .+.|+++|+||+|+.+.... ..
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 132 (176)
T cd04133 55 DTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASP 132 (176)
T ss_pred ECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCC
Confidence 8999999999999999999999999999999999998 68999886543 57999999999999653110 00
Q ss_pred HHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+.......++ ++++|||+++.|++++|+.+++.+
T Consensus 133 v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 133 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 111111111122344 589999999999999999998754
No 31
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=6.6e-23 Score=122.00 Aligned_cols=107 Identities=16% Similarity=0.236 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||||+++|..++..|+++++++++|||.+++.+++....|+..+.+.....++|+++++||+|+.+.... .+....+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 134 (163)
T cd04136 55 DTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR 134 (163)
T ss_pred ECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH
Confidence 8999999999999999999999999999999999999999888876544467899999999998653221 111111111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|+.++|+++++.+
T Consensus 135 ----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 135 ----QWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ----HcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 1236799999999999999999998765
No 32
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=4.8e-23 Score=122.95 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=86.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|||.+++.+++....|+..+.......+.|+++++||+|+.+... ..+. +.+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~ 133 (164)
T cd04175 55 DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA 133 (164)
T ss_pred ECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH
Confidence 899999999999999999999999999999999999999988887654446799999999999865322 2211 1111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...+++++++||+++.|++++|+++++.+.
T Consensus 134 ----~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 134 ----RQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred ----HHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 122357999999999999999999987653
No 33
>KOG0073|consensus
Probab=99.89 E-value=3.5e-22 Score=116.45 Aligned_cols=111 Identities=40% Similarity=0.791 Sum_probs=100.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++||..++..|++||..+|++|+|+|.+++.++++....+..+.......+.|+++++||+|++++.+.+++...+.+.
T Consensus 66 DvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~ 145 (185)
T KOG0073|consen 66 DVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLE 145 (185)
T ss_pred EcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHH
Confidence 78999999999999999999999999999999999999888888776666789999999999999999999998888866
Q ss_pred cc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+ +...|+++.|||.+|+++.+.++||+..+
T Consensus 146 ~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 146 ELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred HhccccCceEEEEeccccccHHHHHHHHHHHH
Confidence 55 67889999999999999999999998653
No 34
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.89 E-value=8.6e-22 Score=119.70 Aligned_cols=111 Identities=45% Similarity=0.804 Sum_probs=89.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..++.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.......
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~ 137 (183)
T cd04152 58 DVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALH 137 (183)
T ss_pred ECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCcc
Confidence 89999999999999999999999999999988888888888877654334579999999999987655555555444432
Q ss_pred cc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ....++++++||+++.|+++++++|.+.+
T Consensus 138 ~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 138 ELSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 22 22346789999999999999999998754
No 35
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.89 E-value=7.6e-23 Score=121.91 Aligned_cols=107 Identities=15% Similarity=0.229 Sum_probs=85.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-HHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~ 79 (113)
||+|+++|..++..|+.++|++++|+|.+++.+++....|+..+.+.....++|+++++||+|+.+..... .....+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~- 133 (163)
T cd04176 55 DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA- 133 (163)
T ss_pred ECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH-
Confidence 89999999999999999999999999999999999999998888765434679999999999985432211 1112221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|+.++|.++++.+
T Consensus 134 ---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 134 ---EEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ---HHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 11235789999999999999999998765
No 36
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.88 E-value=1e-21 Score=117.41 Aligned_cols=109 Identities=38% Similarity=0.766 Sum_probs=90.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++.+..++..++++++++++|+|.+++.++.....|+..+.+.....++|+++++||+|+.+.....++.+.+...
T Consensus 56 Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~ 135 (167)
T cd04160 56 DLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDK 135 (167)
T ss_pred ECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccc
Confidence 89999999999999999999999999999888888888888888765445689999999999997766555555544322
Q ss_pred c--cCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 R--IRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~--~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
. .....++++++||++|.|++++++||+.
T Consensus 136 ~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 136 AEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred cccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 1 2234678999999999999999999975
No 37
>KOG0098|consensus
Probab=99.88 E-value=3.2e-23 Score=123.13 Aligned_cols=107 Identities=23% Similarity=0.383 Sum_probs=87.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+||++|++..+.||++|-++|+|||+++.++|.....|+..+.+.. ..++.+++++||+|+.... ++.++.+..
T Consensus 61 DtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGea 136 (216)
T KOG0098|consen 61 DTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEA 136 (216)
T ss_pred ecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHH
Confidence 899999999999999999999999999999999999999999998874 3789999999999996532 222222222
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+..++.+.++||+++.|++++|.....++
T Consensus 137 FA~ehgLifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 137 FAREHGLIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred HHHHcCceeehhhhhhhhhHHHHHHHHHHHH
Confidence 2233444577999999999999998776554
No 38
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.88 E-value=1.7e-21 Score=115.56 Aligned_cols=110 Identities=59% Similarity=1.081 Sum_probs=93.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++.++|++++|+|+++++++.....|+..+.......+.|+++++||+|+.......++.+.....
T Consensus 49 D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 128 (158)
T cd00878 49 DVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLE 128 (158)
T ss_pred ECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChh
Confidence 89999999999999999999999999999998999988888888665445689999999999997766666777766654
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
......++++++||++|.|++++|++|..+
T Consensus 129 ~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 158 (158)
T cd00878 129 KILGRRWHIQPCSAVTGDGLDEGLDWLLQQ 158 (158)
T ss_pred hccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence 334467899999999999999999998753
No 39
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.88 E-value=7.4e-23 Score=124.32 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=83.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKP--------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------- 70 (113)
||+|+++|+.++..|+.++|++++|||++++.+++.. ..|+..+.+.. ++.|+++|+||+|+.+....
T Consensus 59 DtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~ 136 (182)
T cd04172 59 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQ 136 (182)
T ss_pred ECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCC
Confidence 8999999999999999999999999999999999997 78998886642 57899999999998642100
Q ss_pred HHHHHHhCCCccCCCC-eEEEeccccCCCC-HHHHHHHHHhh
Q psy17510 71 HEIQEKLGLTRIRDRN-WYVQPSCATTADG-LYEGLTWLTSN 110 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~-i~~~~~~l~~~ 110 (113)
..+....+..+.+..+ +++++|||+++.| ++++|+.+++.
T Consensus 137 ~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 137 TPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 0011111111222344 3799999999998 99999998874
No 40
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.88 E-value=1.4e-21 Score=119.22 Aligned_cols=111 Identities=33% Similarity=0.655 Sum_probs=92.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+||+++++.+|..++.+++++++|+|.++..++.....|+..+.+.....+.|+++++||+|+.......++.+..+..
T Consensus 69 D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~ 148 (190)
T cd00879 69 DLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLY 148 (190)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcc
Confidence 79999999999999999999999999999988888888888888765444679999999999997766777777766542
Q ss_pred cc-----------CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI-----------RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~-----------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ....+++++|||++++|++++|+||.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 149 GTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 21 12346799999999999999999998753
No 41
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.88 E-value=1.4e-22 Score=121.21 Aligned_cols=105 Identities=21% Similarity=0.321 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++++++++++|||++++.+++....|+..+.... ..+.|+++++||+|+.+.. +.++..+. .
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-~ 134 (166)
T cd04122 57 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-A 134 (166)
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-H
Confidence 899999999999999999999999999999999999999998875532 2568999999999986543 22332222 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|+.++|.++++.+
T Consensus 135 ----~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 135 ----DENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred ----HHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 12356899999999999999999998754
No 42
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.88 E-value=1.1e-22 Score=123.06 Aligned_cols=106 Identities=17% Similarity=0.288 Sum_probs=85.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|||++++.++.....|+..+.......+.|+++|+||+|+.+. .+.++. ..+.
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~ 147 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA 147 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH
Confidence 8999999999999999999999999999999999999999998866544457899999999998653 222222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 148 ----~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 148 ----DKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11245789999999999999999998653
No 43
>PTZ00369 Ras-like protein; Provisional
Probab=99.88 E-value=2.2e-22 Score=122.85 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++|..++..|+++++++++|||.+++.+++....|+..+.+.....+.|+++++||+|+.+.. ...+. ..+.
T Consensus 59 Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~-~~~~ 137 (189)
T PTZ00369 59 DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEG-QELA 137 (189)
T ss_pred eCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999999999888664334578999999999986432 22111 1111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|+.++|+++++.+
T Consensus 138 ----~~~~~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 138 ----KSFGIPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred ----HHhCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11245799999999999999999998764
No 44
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=2.9e-22 Score=119.34 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=85.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||++++..+++.+++++|++++|+|++++.+++....|+..+.+.....+.|+++++||+|+.+... ..+. ..+.
T Consensus 56 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~-~~~~ 134 (164)
T cd04145 56 DTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEG-QELA 134 (164)
T ss_pred ECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHH-HHHH
Confidence 899999999999999999999999999999999999999988886643345789999999999865322 2222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 135 ----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 135 ----RKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ----HHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 12345789999999999999999998765
No 45
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=2.7e-22 Score=125.63 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=81.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---------H
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMK---------P 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---------~ 70 (113)
||+|+++|..++..|+.+|+++++|||++++.+++.. ..|+..+.+. .++.|+++|+||+|+.+... .
T Consensus 67 DTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~ 144 (232)
T cd04174 67 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQ 144 (232)
T ss_pred eCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccC
Confidence 8999999999999999999999999999999999985 7899888654 25789999999999864210 0
Q ss_pred HHHHHHhCCCccCCCCe-EEEeccccCCC-CHHHHHHHHHhh
Q psy17510 71 HEIQEKLGLTRIRDRNW-YVQPSCATTAD-GLYEGLTWLTSN 110 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~sa~~~~-~i~~~~~~l~~~ 110 (113)
..+....+..+....++ ++++|||++|. |++++|..++..
T Consensus 145 ~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 145 APISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred CcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 00111111112223344 58999999997 899999998764
No 46
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.87 E-value=3.7e-22 Score=124.30 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=83.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA------------- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------- 67 (113)
||+|+++|..++..|+.++|++|+|||++++.+++....|+..+.+.. ..+.|+++|+||+|+.+.
T Consensus 50 Dt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~ 128 (220)
T cd04126 50 DTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDR 128 (220)
T ss_pred eCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccccccccccccccc
Confidence 899999999999999999999999999999999999988888776532 356899999999998651
Q ss_pred --------CCHH---HHHHHhCC------CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 --------MKPH---EIQEKLGL------TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --------~~~~---~~~~~~~~------~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.+ .+++..+. +......+++++|||++|.|++++|..+++.+
T Consensus 129 ~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 129 VSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred ccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1111 12222110 00011236799999999999999999998654
No 47
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=2.1e-21 Score=119.55 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=84.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC---cCCCCCeEEEEEeCCCCCC--CCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND---REMRDAIILIFANKQDLPD--AMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~--~~~~~~~~~ 75 (113)
||||+++++.+++.++++++++|+|||.+++.+++....|+..+... +...++|+++++||+|+.+ .....++.+
T Consensus 56 Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 135 (201)
T cd04107 56 DIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQ 135 (201)
T ss_pred ECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHH
Confidence 89999999999999999999999999999999999999898877532 1125789999999999963 333333332
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..... ..++++++||+++.|++++|+++++.+
T Consensus 136 ~~~~~----~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 136 FCKEN----GFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred HHHHc----CCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22211 124689999999999999999998754
No 48
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=2e-21 Score=115.32 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||+|+++++.++..|+++++++++|+|.++..+++....|+..+.+.....+.|+++++||+|+.+.. ...+..+..
T Consensus 55 Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-- 132 (162)
T cd04138 55 DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-- 132 (162)
T ss_pred ECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH--
Confidence 89999999999999999999999999999988999888888888765434678999999999986532 222222211
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 133 ---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 133 ---KSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ---HHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 12345789999999999999999998765
No 49
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=3e-22 Score=122.33 Aligned_cols=106 Identities=20% Similarity=0.217 Sum_probs=84.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCC--CHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAM--KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~--~~~~~~~~ 76 (113)
||||+++|..++..|++++|++++|||++++.+++....|+..+..... ..+.|+++++||+|+.+.. ...+. ..
T Consensus 53 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~ 131 (190)
T cd04144 53 DTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG-AA 131 (190)
T ss_pred ECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH-HH
Confidence 8999999999999999999999999999999999999999888755322 2578999999999986432 22221 11
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+. ...+++++++||+++.|++++|+++++.+
T Consensus 132 ~~----~~~~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 132 LA----RRLGCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred HH----HHhCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 11 12345789999999999999999998754
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.87 E-value=1.3e-21 Score=121.89 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||+|+++|+.++..|+++++++|+|||++++.++.....|+..+.+. ..+.|+++++||+|+.+.. ...++ + +
T Consensus 68 Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~-~-- 141 (219)
T PLN03071 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-T-F-- 141 (219)
T ss_pred ECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-H-H--
Confidence 89999999999999999999999999999999999999999998654 3679999999999985432 22222 1 1
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....++++++|||+++.|++++|++|++.+
T Consensus 142 --~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 142 --HRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred --HHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 122456799999999999999999998765
No 51
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.87 E-value=9.9e-22 Score=119.41 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=82.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH--HHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH--EIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~ 78 (113)
||+|+++|..++..+++++|++++|||.+++.+++....|+..+.+... ...| ++|+||+|+....+.. .......
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~ 132 (182)
T cd04128 55 DLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQA 132 (182)
T ss_pred eCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHH
Confidence 8999999999999999999999999999999999999999998876432 3467 6789999985322111 0111111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......++++++|||+++.|++++|+++++.+
T Consensus 133 ~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 133 RKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111222346899999999999999999998654
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.87 E-value=8.1e-22 Score=117.52 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++++++++++|+|++++.+++....|...+.+.....++|+++++||+|+.+.. ...+. ..+.
T Consensus 54 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~-~~~~ 132 (164)
T smart00173 54 DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEG-KELA 132 (164)
T ss_pred ECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHH-HHHH
Confidence 89999999999999999999999999999999999998888877654444578999999999986532 22222 1111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ..+.+++++||+++.|++++|+++++++.
T Consensus 133 ~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 133 R----QWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred H----HcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 1 12357999999999999999999997653
No 53
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=4.5e-22 Score=121.48 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=83.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHH---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK--- 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~--- 76 (113)
||+|+++|+.++..++.+++++++|||++++.+++... .|+..+... ..+.|+++|+||+|+.+.....+....
T Consensus 54 Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~ 131 (189)
T cd04134 54 DTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGK 131 (189)
T ss_pred ECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccC
Confidence 89999999999999999999999999999999998875 588888653 357899999999999764332211111
Q ss_pred ------hCCCccCC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 ------LGLTRIRD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ------~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+...... ..+++++|||+++.|++++|+++++.+
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 132 HTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 01111111 236899999999999999999998754
No 54
>KOG0080|consensus
Probab=99.87 E-value=1e-22 Score=118.59 Aligned_cols=108 Identities=25% Similarity=0.319 Sum_probs=90.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|||+|+.+...||.+|-++|+|||++.+++|.....|++++-.....+++-.++|+||+|..+ ...+..+.++.
T Consensus 66 DTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~k 142 (209)
T KOG0080|consen 66 DTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLK 142 (209)
T ss_pred eccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHH
Confidence 899999999999999999999999999999999999999999985544446677899999999643 34445555655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+..++-+++|||++.+|++..|+.++..+
T Consensus 143 fAr~h~~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 143 FARKHRCLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred HHHhhCcEEEEcchhhhccHHHHHHHHHHHH
Confidence 6556677799999999999999999988764
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.86 E-value=3.5e-21 Score=115.38 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++++..++..++..+|++|+|||.+++.++.....|+..+.... .++|+++++||+|+.+.....+..+ +.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~~-- 129 (166)
T cd00877 55 DTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-FH-- 129 (166)
T ss_pred ECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-HH--
Confidence 899999999999999999999999999999999999999999986643 3799999999999864322222111 11
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....++++++||+++.|++++|++|++.+
T Consensus 130 --~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 130 --RKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred --HHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 23456799999999999999999998765
No 56
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.86 E-value=1.2e-21 Score=116.80 Aligned_cols=105 Identities=20% Similarity=0.280 Sum_probs=84.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||+|++++..++..++.++|++++|||.+++.+++....|+..+.+.. ..+.|+++++||.|+.+.... .+....+.
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~- 132 (161)
T cd04117 55 DTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA- 132 (161)
T ss_pred eCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH-
Confidence 899999999999999999999999999999999999999999886542 246899999999998654321 12222221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...++++++|||+++.|++++|++|++.
T Consensus 133 ---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 133 ---KEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ---HHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 1123578999999999999999999875
No 57
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=4.5e-22 Score=120.54 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=82.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKP--------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------- 70 (113)
||+|+++|+.++..++.++|++++|||.+++.+++.. ..|+..+.+. .++.|+++|+||+|+.+....
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~ 132 (178)
T cd04131 55 DTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQ 132 (178)
T ss_pred ECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCC
Confidence 8999999999999999999999999999999999996 7899888664 257899999999998642100
Q ss_pred HHHHHHhCCCccCCCCe-EEEeccccCCCC-HHHHHHHHHhh
Q psy17510 71 HEIQEKLGLTRIRDRNW-YVQPSCATTADG-LYEGLTWLTSN 110 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~-i~~~~~~l~~~ 110 (113)
..+....+..+....++ ++++|||+++.+ ++++|..+++.
T Consensus 133 ~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 133 APVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 00111111111223343 689999999995 99999998874
No 58
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=1.1e-21 Score=121.65 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|++++..++..++.++|++++|||++++.+++....|+..+.+.......|+++++||+|+.+.. ..++. ..+.
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~ 136 (211)
T cd04111 58 DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA 136 (211)
T ss_pred eCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999999999988765333467899999999986532 22222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|++|++.+
T Consensus 137 ----~~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 137 ----KDLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred ----HHhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12336799999999999999999998754
No 59
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.86 E-value=1.5e-21 Score=117.47 Aligned_cols=107 Identities=20% Similarity=0.322 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
||||+++|..++..+++++|++++|+|++++++++....|+..+.+.......|+++|+||+|+.+.... .+.....
T Consensus 55 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~ 134 (170)
T cd04108 55 DTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL 134 (170)
T ss_pred eCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH
Confidence 8999999999999999999999999999999999999999998865432345789999999998553221 1111111
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+.+++++||+++.|++++|+.+++.+
T Consensus 135 ~----~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 135 A----AEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred H----HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 12235689999999999999999998754
No 60
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.86 E-value=7e-22 Score=119.38 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=81.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||+|+++|..++..++.++|++|+|||.+++.+++... .|+..+... ..++|+++++||+|+.+... ..+.+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~---~~~~l~~ 129 (175)
T cd01874 55 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPS---TIEKLAK 129 (175)
T ss_pred ECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChh---hHHHhhh
Confidence 89999999999999999999999999999999999986 588777553 25789999999999854311 1111110
Q ss_pred ------------CccCCC-CeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 ------------TRIRDR-NWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ------------~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+.. .+++++|||++|.|++++|+.++..
T Consensus 130 ~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 130 NKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred ccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 011112 3689999999999999999999874
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.86 E-value=1.5e-21 Score=116.72 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=82.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc--CCCCCeEEEEEeCCCCCCCCC--HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR--EMRDAIILIFANKQDLPDAMK--PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~D~~~~~~--~~~~~~~ 76 (113)
||+|++++..++..++..++++++|||.+++.+++....|+..+.+.. ...++|+++++||+|+.+... ..+. ..
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~ 133 (165)
T cd04140 55 DTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG-AA 133 (165)
T ss_pred ECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH-HH
Confidence 899999999999999999999999999999999998888877664421 125789999999999865222 2211 11
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. ...++++++|||++|.|++++|++|+..
T Consensus 134 ~~----~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 134 CA----TEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HH----HHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 11 1234578999999999999999999864
No 62
>KOG0091|consensus
Probab=99.86 E-value=1.2e-21 Score=114.52 Aligned_cols=107 Identities=21% Similarity=0.356 Sum_probs=86.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCCCCCH-HHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLPDAMKP-HEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~~-~~~~~~~~ 78 (113)
||+||++|++..+.||.++-++++|||+++..+++....|+++....-..+.+ .+++|++|+|+.+.... .+-+++++
T Consensus 64 dtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklA 143 (213)
T KOG0091|consen 64 DTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLA 143 (213)
T ss_pred eccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHH
Confidence 89999999999999999999999999999999999999999998776554444 45889999999764331 12222222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++.++++||+++.|+++.|..+++.+
T Consensus 144 ----a~hgM~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 144 ----ASHGMAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred ----HhcCceEEEecccCCCcHHHHHHHHHHHH
Confidence 23456789999999999999999888754
No 63
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.86 E-value=2.2e-20 Score=110.20 Aligned_cols=109 Identities=31% Similarity=0.637 Sum_probs=90.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++..+|++++|+|.+++.++.....|+..+.......++|+++++||+|+.+.....++.+.....
T Consensus 50 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 129 (159)
T cd04159 50 DLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLK 129 (159)
T ss_pred ECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcc
Confidence 79999999999999999999999999999888888877888887665444678999999999987765555565655544
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++|++++.|++++++++.+
T Consensus 130 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 130 SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 44445678999999999999999999875
No 64
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.86 E-value=1.7e-20 Score=112.77 Aligned_cols=110 Identities=45% Similarity=0.862 Sum_probs=92.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|+.++...+..+++.++++++|+|.++..++.....++..+.......++|+++++||+|+.+....+++.+.++..
T Consensus 64 D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~ 143 (173)
T cd04155 64 DIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLH 143 (173)
T ss_pred ECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCc
Confidence 79999999999999999999999999999888888877777777654434579999999999997766667777777665
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
......++++++||++++|++++|+||+++
T Consensus 144 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 144 DLRDRTWHIQACSAKTGEGLQEGMNWVCKN 173 (173)
T ss_pred ccCCCeEEEEEeECCCCCCHHHHHHHHhcC
Confidence 555566788999999999999999999863
No 65
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.86 E-value=1.5e-21 Score=121.37 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCC--CHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAM--KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~--~~~~~~~~ 76 (113)
||+|++.+..++..|+.++|++|+|||++++.+++....|+..+.+... ..+.|+++|+||+|+.+.. ...+ ...
T Consensus 56 Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~-~~~ 134 (215)
T cd04109 56 DIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDK-HAR 134 (215)
T ss_pred ECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHH-HHH
Confidence 8999999999999999999999999999999999999999888865422 2356899999999986432 2221 111
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+. ...+++++++||++|.|++++|+++++.+
T Consensus 135 ~~----~~~~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 135 FA----QANGMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred HH----HHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11 11235788999999999999999998764
No 66
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=1.2e-21 Score=120.11 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=78.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMK---------- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---------- 69 (113)
||+|+++ .+...|+.++|++++|||++++.+++... .|+..+... ..+.|+++|+||+|+.+...
T Consensus 72 DTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 147 (195)
T cd01873 72 DTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPL 147 (195)
T ss_pred eCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhccccc
Confidence 8999976 35567899999999999999999999886 588887553 25789999999999864100
Q ss_pred ------HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 70 ------PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 70 ------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+....+....+..++++++|||+++.|++++|+.+++.
T Consensus 148 ~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 148 ARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 01111111222223345689999999999999999999875
No 67
>KOG0088|consensus
Probab=99.86 E-value=3.2e-22 Score=116.40 Aligned_cols=104 Identities=25% Similarity=0.350 Sum_probs=83.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||+||++|.++-+.||.+++++++|||+++.++|+....|+.++.+.. ...+.+++|+||+|+.+... .++ ++.+
T Consensus 68 DTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qe-Ae~Y- 144 (218)
T KOG0088|consen 68 DTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQVTRQE-AEAY- 144 (218)
T ss_pred eccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHH-HHHH-
Confidence 899999999999999999999999999999999999999999997652 35678999999999965422 211 1111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...-+..++++||+.+.||.++|+.|...
T Consensus 145 ---AesvGA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 145 ---AESVGALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred ---HHhhchhheecccccccCHHHHHHHHHHH
Confidence 11233357799999999999999988754
No 68
>KOG0093|consensus
Probab=99.86 E-value=6.4e-22 Score=113.78 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=85.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~ 75 (113)
||+|+|+|+.+.-.|+.+|+++|++||.++.+++.....|..++.... ..++|+++++||+|+.++.. ...+++
T Consensus 76 DTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~ 154 (193)
T KOG0093|consen 76 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLAD 154 (193)
T ss_pred ecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHH
Confidence 899999999999999999999999999999999999999999885542 47899999999999976432 233444
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.++. .+|++||+.+.+++++|+.++..+
T Consensus 155 ~LGf--------efFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 155 QLGF--------EFFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred HhCh--------HHhhhcccccccHHHHHHHHHHHH
Confidence 4443 477999999999999999887653
No 69
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.86 E-value=1.1e-20 Score=114.01 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=81.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHH--
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEK-- 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~-- 76 (113)
||+|++++..++..+++++|++|+|||.+++.+++... .|+..+... ..+.|+++++||+|+.+... .+.+.+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 132 (174)
T cd01871 55 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL 132 (174)
T ss_pred ECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccC
Confidence 89999999999999999999999999999999999985 587777543 25789999999999864221 1111111
Q ss_pred ------hCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhh
Q psy17510 77 ------LGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 77 ------~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+.......+ +++++|||++|.|++++|+.+++.
T Consensus 133 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 133 TPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 0000111122 478999999999999999999874
No 70
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.86 E-value=2.2e-21 Score=116.00 Aligned_cols=105 Identities=25% Similarity=0.376 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|||.+++.++.....|+..+.+.. ..+.|+++++||+|+.+.. ..++... +.
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~ 134 (166)
T cd01869 57 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA 134 (166)
T ss_pred ECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH
Confidence 899999999999999999999999999999999999999999886542 2568999999999986532 2222222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 135 ----~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 135 ----DELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ----HHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 12356799999999999999999998865
No 71
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.86 E-value=2e-21 Score=116.15 Aligned_cols=105 Identities=18% Similarity=0.295 Sum_probs=84.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|++++..++..++++++++++|+|.+++.+++....|+..+.+.. ....|+++++||+|+.+.. ...+..+ +.
T Consensus 56 Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~ 133 (165)
T cd01865 56 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQ-LA 133 (165)
T ss_pred ECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHH-HH
Confidence 899999999999999999999999999999999999999999886532 2468999999999986532 2222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 134 ----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 134 ----DQLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred ----HHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 12345799999999999999999998754
No 72
>KOG0079|consensus
Probab=99.85 E-value=5.9e-22 Score=114.08 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=86.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~ 79 (113)
||+|+|+|+.+...|+.+.|++++|||+++.++|.....|++++.+. +...|-++|+||.|.++..- ..+-+..+.
T Consensus 63 DtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A- 139 (198)
T KOG0079|consen 63 DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFA- 139 (198)
T ss_pred ecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHHHHHH-
Confidence 89999999999999999999999999999999999999999999765 46889999999999876322 112222222
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+++.+|++||+...+++..|.-|.++
T Consensus 140 ---~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 140 ---LQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ---HhcCchheehhhhhcccchHHHHHHHHH
Confidence 2456679999999999999999877764
No 73
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.85 E-value=3.2e-21 Score=118.57 Aligned_cols=104 Identities=21% Similarity=0.331 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++++.++..++.+++++++|||++++.+++....|+..+... ....|+++++||+|+.+... ..+..+ +.
T Consensus 61 D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~-~~ 137 (199)
T cd04110 61 DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYK-FA 137 (199)
T ss_pred eCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHH-HH
Confidence 89999999999999999999999999999999999999999988653 35689999999999865322 222222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 138 ----~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 138 ----GQMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred ----HHcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 12346799999999999999999998754
No 74
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.85 E-value=3e-21 Score=115.63 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|++++..++..+++++|++++|||++++.+++....|+..+.+.. ..+.|+++++||+|+.+.. ..++..+...
T Consensus 58 D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 136 (167)
T cd01867 58 DTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALAD 136 (167)
T ss_pred eCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886542 2578999999999997532 2222222211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 137 -----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 137 -----EYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2345789999999999999999998865
No 75
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.85 E-value=2.8e-21 Score=115.24 Aligned_cols=106 Identities=23% Similarity=0.362 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC----CCCCeEEEEEeCCCCCCC--CCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE----MRDAIILIFANKQDLPDA--MKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~--~~~~~~~ 74 (113)
||+|++++..++..++.+++++|+|+|.+++.+++....|+..+.+... ..+.|+++++||+|+.+. .+..+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 134 (168)
T cd04119 55 DLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGR 134 (168)
T ss_pred ECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHH
Confidence 8999999999999999999999999999999999999999988865432 246899999999998632 2232222
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. . ...+++++++||+++.|++++|+++.+.+
T Consensus 135 ~~-~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 135 LW-A----ESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HH-H----HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 21 1 12335789999999999999999998764
No 76
>KOG0081|consensus
Probab=99.85 E-value=1.6e-21 Score=113.57 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=86.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|||+|+++.-.++.+|.+++++||.++..+|-....|+.++..+.-+.+-.+++++||+|+.+.... .+.....
T Consensus 73 DTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V---s~~qa~~ 149 (219)
T KOG0081|consen 73 DTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV---SEDQAAA 149 (219)
T ss_pred ccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh---hHHHHHH
Confidence 8999999999999999999999999999999999999999999988877788889999999999764221 1111111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....-++|+|++||.+|.++++..+.|...
T Consensus 150 La~kyglPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 150 LADKYGLPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred HHHHhCCCeeeeccccCcCHHHHHHHHHHH
Confidence 122345679999999999999888776643
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.85 E-value=3e-20 Score=117.60 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=87.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc--------CCCCCeEEEEEeCCCCCC--CCCH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR--------EMRDAIILIFANKQDLPD--AMKP 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~D~~~--~~~~ 70 (113)
||+|++.|..++..++.++|++|+|||++++.+++....|+.++.... ...++|+++++||+|+.. ....
T Consensus 54 Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~ 133 (247)
T cd04143 54 DTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR 133 (247)
T ss_pred ECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH
Confidence 899999999999999999999999999999999999999988886431 225789999999999864 3344
Q ss_pred HHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 71 HEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.++.+..+. ...+.++++||+++.|++++|++|++...
T Consensus 134 ~ei~~~~~~----~~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 134 DEVEQLVGG----DENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 555444332 13567999999999999999999987653
No 78
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=5.4e-21 Score=114.12 Aligned_cols=105 Identities=19% Similarity=0.326 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.+++++++|+|++++.+++....|+..+.+.. ..+.|+++++||+|+.+.. ..++......
T Consensus 58 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~ 136 (165)
T cd01868 58 DTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE 136 (165)
T ss_pred eCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886643 2468999999999986532 2222222211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++...+
T Consensus 137 -----~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 137 -----KNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred -----HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 1346799999999999999999998765
No 79
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.85 E-value=3.7e-21 Score=115.57 Aligned_cols=108 Identities=17% Similarity=0.288 Sum_probs=86.1
Q ss_pred CCCCccCch-hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhC
Q psy17510 1 DVGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~-~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~ 78 (113)
||+|+++++ .++..+++++|++++|||++++.++.....|+..+.......++|+++++||+|+...... .+....+.
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 136 (170)
T cd04115 57 DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA 136 (170)
T ss_pred eCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH
Confidence 899999987 5789999999999999999999999999999988876544467999999999998653321 12222222
Q ss_pred CCccCCCCeEEEeccccC---CCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATT---ADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~---~~~i~~~~~~l~~~~~ 112 (113)
. ...++++++||++ +.+++++|.++++.++
T Consensus 137 ~----~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 137 D----AHSMPLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred H----HcCCcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 1 2336799999999 8899999999998764
No 80
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.85 E-value=4.8e-21 Score=114.17 Aligned_cols=105 Identities=15% Similarity=0.254 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH-HHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE-IQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~-~~~~~~~ 79 (113)
||||++++..+++.++.++|++++|+|.+++.+++....|+..+.+.. .+.|+++|+||+|+.+...... ..+.+.
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~- 134 (164)
T cd04101 58 DSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA- 134 (164)
T ss_pred ECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH-
Confidence 899999999999999999999999999999999998899998886542 5689999999999865432111 112121
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 135 ---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 135 ---QANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ---HHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 12345789999999999999999998864
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.84 E-value=7.3e-21 Score=114.05 Aligned_cols=107 Identities=16% Similarity=0.224 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|..+++.+++.++++++|+|.+++.+++....|...+.+.....+.|+++++||+|+.+... ..+... +.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~ 133 (168)
T cd04177 55 DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LS 133 (168)
T ss_pred eCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HH
Confidence 899999999999999999999999999999999999998888886544446799999999999865322 222111 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ...++++++||+++.|++++|++++.++
T Consensus 134 ~~---~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 134 QQ---WGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred HH---cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11 1225799999999999999999998754
No 82
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=5.6e-21 Score=116.80 Aligned_cols=105 Identities=22% Similarity=0.371 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.+.. ..+.|+++++||+|+... ....+. +.+.
T Consensus 56 Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~-~~l~ 133 (191)
T cd04112 56 DTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDG-ERLA 133 (191)
T ss_pred eCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHH-HHHH
Confidence 899999999999999999999999999999999999999998886542 247899999999998532 222222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 134 ----~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 134 ----KEYGVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11345799999999999999999998764
No 83
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.84 E-value=3.2e-20 Score=110.67 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=82.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|+++|..++..+++++|++++|+|.+++.+++....|+..+.+. ..++|+++++||+|+.+.. ..+ ...+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~-~~~~~-- 128 (161)
T cd04124 55 DTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQK-KFNFA-- 128 (161)
T ss_pred eCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHH-HHHHH--
Confidence 89999999999999999999999999999998999888999888653 2578999999999984321 111 11111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+.+++.+
T Consensus 129 --~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 129 --EKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred --HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998754
No 84
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.84 E-value=3.9e-20 Score=110.93 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC---CCCCeEEEEEeCCCCCCC-CCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDA-MKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~-~~~~~~~~~ 76 (113)
||||+++++.++..+++.+|++++|||++++.+++....|...+..... ..+.|+++++||+|+.+. ...++..+.
T Consensus 60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 139 (170)
T cd04116 60 DTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAW 139 (170)
T ss_pred eCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHH
Confidence 8999999999999999999999999999999999998889887755321 246899999999998642 333333332
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... ...++++++||+++.|+.++|+++++.+
T Consensus 140 ~~~----~~~~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 140 CRE----NGDYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred HHH----CCCCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 211 1224689999999999999999998753
No 85
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.84 E-value=5.1e-21 Score=113.92 Aligned_cols=105 Identities=13% Similarity=0.242 Sum_probs=77.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++. ..|++.+|++++|||.+++.+++....|+..+.......+.|+++++||.|+.... ..++....+..
T Consensus 53 D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~ 126 (158)
T cd04103 53 DEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQ 126 (158)
T ss_pred ECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHH
Confidence 7889875 34678899999999999999999999999999765444678999999999974211 11111111111
Q ss_pred ccCC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+. ..+++++|||+++.|++++|+.+++.+
T Consensus 127 ~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 127 LCADMKRCSYYETCATYGLNVERVFQEAAQKI 158 (158)
T ss_pred HHHHhCCCcEEEEecCCCCCHHHHHHHHHhhC
Confidence 1111 246899999999999999999998753
No 86
>KOG0394|consensus
Probab=99.84 E-value=4.4e-21 Score=113.86 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=85.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCC---CCCeEEEEEeCCCCCCCCCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM---RDAIILIFANKQDLPDAMKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~ 77 (113)
||+|||||+++.-.+|.+||.+++|||++++.+++....|-++++..+.. ..-|++++|||+|+.+..+. .+....
T Consensus 64 DTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r-~VS~~~ 142 (210)
T KOG0394|consen 64 DTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR-QVSEKK 142 (210)
T ss_pred ecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc-eeeHHH
Confidence 89999999999999999999999999999999999999999988765332 34699999999998653211 111111
Q ss_pred CCCcc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..... ....+|+|++|||...++.+.|..+++..
T Consensus 143 Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 143 AQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred HHHHHHhcCCceeEEecccccccHHHHHHHHHHHH
Confidence 11111 23567999999999999999999887653
No 87
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.84 E-value=7.3e-21 Score=113.14 Aligned_cols=103 Identities=18% Similarity=0.307 Sum_probs=83.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|+|++++.+++....|+..+.+. ..++|+++++||+|+.+.. +.++.... .
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~-~ 133 (162)
T cd04106 57 DTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEAL-A 133 (162)
T ss_pred eCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHH-H
Confidence 89999999999999999999999999999999999999998888543 3579999999999986532 22222211 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+++++++||+++.|++++++++...
T Consensus 134 ----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 134 ----KRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ----HHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 1234579999999999999999999864
No 88
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.84 E-value=1.5e-20 Score=117.18 Aligned_cols=108 Identities=10% Similarity=0.148 Sum_probs=80.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HH------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKP-HE------ 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~------ 72 (113)
||+|+++|..++..++.++|++|+|||.+++.+++... .|...+... .++.|+++|+||+|+.+.... ..
T Consensus 55 Dt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~ 132 (222)
T cd04173 55 DTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRL 132 (222)
T ss_pred eCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccC
Confidence 89999999999999999999999999999999999985 566655432 367999999999999653211 11
Q ss_pred --HHHHhCCCccCCCC-eEEEeccccCCC-CHHHHHHHHHhh
Q psy17510 73 --IQEKLGLTRIRDRN-WYVQPSCATTAD-GLYEGLTWLTSN 110 (113)
Q Consensus 73 --~~~~~~~~~~~~~~-~~~~~~sa~~~~-~i~~~~~~l~~~ 110 (113)
+....+.......+ +++++|||+++. |++++|+.++..
T Consensus 133 ~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 133 IPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred CccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 11111111112234 479999999988 599999988764
No 89
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.84 E-value=9e-21 Score=115.34 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=81.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCC------CHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAM------KPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~~~~ 73 (113)
||||++++..++..+++++|++++|||.+++.+++... .|+..+... ..+.|+++++||+|+.+.. ...+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~ 132 (187)
T cd04132 55 DTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQA 132 (187)
T ss_pred ECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHH
Confidence 89999999999999999999999999999999999885 587777543 2578999999999986532 12211
Q ss_pred HHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+. ...++ +++++||+++.|+.++|+++++.+
T Consensus 133 -~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 133 -ESVA----KKQGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred -HHHH----HHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 1111 11223 689999999999999999998754
No 90
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.84 E-value=1.2e-20 Score=113.48 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=81.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHH----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQ---- 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~---- 74 (113)
||||++++..++..++.++|++++|||.+++.+++... .|+..+... ..++|+++++||+|+.+... ..++.
T Consensus 52 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 129 (174)
T smart00174 52 DTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQ 129 (174)
T ss_pred ECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccC
Confidence 89999999999999999999999999999999999885 588887653 25799999999999865221 10110
Q ss_pred ----HHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 ----EKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ----~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...........+ .++++|||+++.|++++|+.+++.+
T Consensus 130 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 130 EPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred CCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 000000111122 3789999999999999999998754
No 91
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.84 E-value=1.2e-20 Score=113.13 Aligned_cols=105 Identities=22% Similarity=0.317 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|++++..++..+++.+|++++|+|++++.+++....|+..+.+.. .+++|+++++||+|+.+. .+..+......
T Consensus 59 Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T cd01866 59 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK 137 (168)
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886542 257899999999998643 23333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|.++++.+
T Consensus 138 -----~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 138 -----EHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2345799999999999999999998764
No 92
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.84 E-value=1.2e-20 Score=112.15 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=84.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|+|++++.++.....|+..+.... ..++|+++++||+|+.+.. +..+......
T Consensus 55 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 133 (161)
T cd04113 55 DTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ 133 (161)
T ss_pred ECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999988875432 3678999999999986532 2333322222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++++.+
T Consensus 134 -----~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 134 -----ENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred -----HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 1236799999999999999999998753
No 93
>KOG0095|consensus
Probab=99.84 E-value=3.2e-21 Score=111.35 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~ 79 (113)
||+||+||++....|+..||++|+|+|++-+++|+...+|+.++.+... .++--++|+||+|+.+... .+++.+.++
T Consensus 62 dtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs- 139 (213)
T KOG0095|consen 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFS- 139 (213)
T ss_pred eccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHH-
Confidence 8999999999999999999999999999999999999999999966532 4566799999999866322 334444444
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....+.++++||+..++++.+|..++-.
T Consensus 140 ---~~qdmyfletsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 140 ---EAQDMYFLETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred ---HhhhhhhhhhcccchhhHHHHHHHHHHH
Confidence 2244568899999999999999877643
No 94
>KOG0395|consensus
Probab=99.84 E-value=1.6e-20 Score=115.02 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=89.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++.|..+...|+.++|++++||+++++.+|+....+...+.+.+.....|+++||||+|+... .++....+..
T Consensus 57 Dt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~ 133 (196)
T KOG0395|consen 57 DTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKA 133 (196)
T ss_pred cCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHH
Confidence 8999999999999999999999999999999999999999999966665567899999999999763 1222222222
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++++||+...+++++|..|++.++
T Consensus 134 la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 134 LARSWGCAFIETSAKLNYNVDEVFYELVREIR 165 (196)
T ss_pred HHHhcCCcEEEeeccCCcCHHHHHHHHHHHHH
Confidence 23345667999999999999999999988654
No 95
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=5e-20 Score=110.03 Aligned_cols=106 Identities=18% Similarity=0.296 Sum_probs=83.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.. ...+..+...
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 136 (165)
T cd01864 58 DTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE 136 (165)
T ss_pred ECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886532 3578999999999986532 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .....++++||+++.|++++|+++++.+
T Consensus 137 -~---~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 137 -K---NGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred -H---cCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 1 1124688999999999999999998753
No 96
>KOG0076|consensus
Probab=99.83 E-value=4.1e-21 Score=112.97 Aligned_cols=111 Identities=37% Similarity=0.766 Sum_probs=99.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
|.+||+..+++|..||.-||++|+++|++++++++.....++.+..+....++|+++.+||.|+.+....+++...++.
T Consensus 75 dlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~ 154 (197)
T KOG0076|consen 75 DLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLA 154 (197)
T ss_pred EcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhh
Confidence 6899999999999999999999999999999999999988888887777789999999999999988888888777773
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+.+++..+||.+|.|+++...|++..+
T Consensus 155 e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 155 ELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 34456788999999999999999999998764
No 97
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=1.9e-20 Score=114.12 Aligned_cols=106 Identities=24% Similarity=0.335 Sum_probs=84.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||+|++++..++..+++++|++++|||++++.+++....|+..+.... ..+.|+++++||+|+.+.... .+....+.
T Consensus 55 Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~- 132 (188)
T cd04125 55 DTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC- 132 (188)
T ss_pred ECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH-
Confidence 899999999999999999999999999999999999999999886542 245899999999998753321 12222221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 133 ---~~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 133 ---DSLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred ---HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12345799999999999999999998764
No 98
>PLN03110 Rab GTPase; Provisional
Probab=99.83 E-value=1.6e-20 Score=116.81 Aligned_cols=106 Identities=21% Similarity=0.317 Sum_probs=85.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||+|++++..++..++++++++++|||.+++.+++....|+..+.+.. ..+.|+++++||+|+.+.... .+....+..
T Consensus 67 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~ 145 (216)
T PLN03110 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE 145 (216)
T ss_pred ECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999998886542 257899999999998653321 222232221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|++++..+
T Consensus 146 ----~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 146 ----KEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred ----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2356899999999999999999998654
No 99
>KOG0086|consensus
Probab=99.83 E-value=3.5e-20 Score=107.38 Aligned_cols=106 Identities=20% Similarity=0.292 Sum_probs=85.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+||++|++..+.||.+|.+.++|+|+++.++|+....|+..++... .+++-+++++||.|+.++.... -...-.
T Consensus 64 DTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~R~Vt---flEAs~ 139 (214)
T KOG0086|consen 64 DTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPEREVT---FLEASR 139 (214)
T ss_pred ecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChhhhhh---HHHHHh
Confidence 899999999999999999999999999999999999999999997643 4788999999999997643322 111112
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+...+.+-++++||++|.++++.|-..++.
T Consensus 140 FaqEnel~flETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 140 FAQENELMFLETSALTGENVEEAFLKCART 169 (214)
T ss_pred hhcccceeeeeecccccccHHHHHHHHHHH
Confidence 223345568899999999999988766543
No 100
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.83 E-value=3e-20 Score=113.61 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=82.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC------CHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------KPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~~~~~ 74 (113)
||+|++++..++..++.++|++++|||.+++.+++....|+..+.+. ..+.|+++|+||+|+.+.. ...+..
T Consensus 56 D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~ 133 (193)
T cd04118 56 DTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQ 133 (193)
T ss_pred ECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHH
Confidence 89999999999999999999999999999999999888899888653 2478999999999985421 111111
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+ +. ...+++++++||+++.|++++|+++++.+
T Consensus 134 ~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 134 D-FA----DEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred H-HH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 11 12345789999999999999999998754
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=1e-19 Score=111.78 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-C--CHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-M--KPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~--~~~~~~~~~ 77 (113)
||+|+++|..++..++..+|++++|+|++++.+++....|+..+.+.....++|+++++||+|+.+. . ...+..+..
T Consensus 53 D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~ 132 (198)
T cd04147 53 DTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV 132 (198)
T ss_pred ECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH
Confidence 8999999999999999999999999999999999999999888876544457999999999998652 1 122222211
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.. ..+.+++++||++|.|++++|+++++.+.
T Consensus 133 ~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 133 EL----DWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred Hh----hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 11 12346889999999999999999988653
No 102
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.83 E-value=3.7e-20 Score=110.02 Aligned_cols=105 Identities=24% Similarity=0.343 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|+|.+++.+++....|+..+.... ..+.|+++++||+|+.+.. ...+......
T Consensus 55 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~ 133 (161)
T cd01861 55 DTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK 133 (161)
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886542 2369999999999985422 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 134 -----~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 134 -----ELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred -----HhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1246789999999999999999998753
No 103
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.83 E-value=1.7e-19 Score=107.21 Aligned_cols=105 Identities=26% Similarity=0.376 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~ 79 (113)
||||++++..++..+++.+|++++|+|.+++.+++....|+..+.......+.|+++++||+|+... ....+..+...
T Consensus 55 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~- 133 (161)
T cd01863 55 DTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR- 133 (161)
T ss_pred ECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-
Confidence 8999999999999999999999999999999999999889888876554568999999999998632 23332222111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+++++++||++|.|++++++++.+.
T Consensus 134 ----~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 134 ----KHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ----HcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 235679999999999999999998865
No 104
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=4.6e-20 Score=114.33 Aligned_cols=106 Identities=21% Similarity=0.291 Sum_probs=81.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~ 77 (113)
||||+++|..++..++.++|++++|||.+++.++..... |...+.......+.|+++|+||+|+..... ..+... +
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~ 146 (211)
T PLN03118 68 DTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-L 146 (211)
T ss_pred ECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-H
Confidence 899999999999999999999999999999989988865 544443322235679999999999865322 222211 1
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+++++++||+++.|++++|++|.+.+
T Consensus 147 ~----~~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 147 A----KEHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred H----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 12345789999999999999999998754
No 105
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.82 E-value=4.5e-20 Score=109.84 Aligned_cols=105 Identities=24% Similarity=0.354 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
|+||++++..++..+++++|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+.. +..+..+...
T Consensus 56 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 134 (163)
T cd01860 56 DTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYAD 134 (163)
T ss_pred eCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886653 2678999999999986432 3333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|+.++++++++.+
T Consensus 135 -----~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 135 -----ENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred -----HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 1235799999999999999999998865
No 106
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.82 E-value=3.1e-20 Score=111.80 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKP--------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------- 70 (113)
||||++++..++..+++++|++++|||.+++.+++... .|+..+.+. ..+.|+++++||+|+.+....
T Consensus 54 Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 131 (173)
T cd04130 54 DTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGE 131 (173)
T ss_pred ECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCC
Confidence 89999999999999999999999999999999998875 688777543 256899999999998643210
Q ss_pred ----HHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHh
Q psy17510 71 ----HEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 71 ----~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+-...+. ...+ +++++|||+++.|++++|+.++.
T Consensus 132 ~~v~~~~~~~~a----~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 132 KPVSQSRAKALA----EKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCcCHHHHHHHH----HHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 00111111 1122 37999999999999999998875
No 107
>KOG0072|consensus
Probab=99.81 E-value=1.7e-19 Score=103.49 Aligned_cols=112 Identities=42% Similarity=0.792 Sum_probs=101.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|.+|+-..+.+|+.||.+.+++|||+|.++.+...-....+..++++++.++..+++++||.|........++...+++.
T Consensus 68 dLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~ 147 (182)
T KOG0072|consen 68 DLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQ 147 (182)
T ss_pred EccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChH
Confidence 67899999999999999999999999999988888777788888888888889999999999998877888888888888
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.++..-|.++++||.+|.|++.+.+||.+.++
T Consensus 148 ~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 148 KLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred HHhhheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 88778899999999999999999999998654
No 108
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.81 E-value=5.6e-20 Score=109.84 Aligned_cols=106 Identities=23% Similarity=0.250 Sum_probs=80.2
Q ss_pred CCCCccCc-hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCeEEEEEeCCCCCCCC--CHHHHHHH
Q psy17510 1 DVGGQDKI-RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDAM--KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~--~~~~~~~~ 76 (113)
||||++++ ...+..++..+|++++|+|++++.+++....|+..+..... ..+.|+++++||+|+.+.. +..+. ..
T Consensus 53 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~ 131 (165)
T cd04146 53 DTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEG-EK 131 (165)
T ss_pred ECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHH-HH
Confidence 89999863 45677789999999999999999999998888877765432 3579999999999985432 22221 11
Q ss_pred hCCCccCCCCeEEEeccccCC-CCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTA-DGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~-~~i~~~~~~l~~~~ 111 (113)
+. ...+++++++||+++ .|++++|+++++.+
T Consensus 132 ~~----~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 132 LA----SELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HH----HHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 11 112357999999999 59999999998765
No 109
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.81 E-value=8.6e-20 Score=108.59 Aligned_cols=105 Identities=22% Similarity=0.407 Sum_probs=85.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
|+||++++..++..+++.+|++++|||++++.+++....|+..+..... .++|+++++||+|+.+. ...+...+ +.
T Consensus 55 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~ 132 (164)
T smart00175 55 DTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA 132 (164)
T ss_pred ECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH
Confidence 8999999999999999999999999999999999998889988865432 57999999999998652 22222222 22
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++|++++.|++++++++.+.+
T Consensus 133 ~----~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 133 E----EHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred H----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 2345799999999999999999998765
No 110
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.81 E-value=8e-20 Score=114.06 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=79.9
Q ss_pred CCCCccCchhhHHhhhc-CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYT-GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~-~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~ 77 (113)
||+|++ ......++. ++|++++|||++++.+++....|+..+.+.....++|+++|+||+|+.+... .++. ..+
T Consensus 56 Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~ 132 (221)
T cd04148 56 DHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RAC 132 (221)
T ss_pred eCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHH
Confidence 899998 334455666 9999999999999999999989988886654346799999999999865322 2211 111
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ...+++++++||+++.|++++|+++++.+.
T Consensus 133 a----~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 133 A----VVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred H----HHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1 123457899999999999999999998764
No 111
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=9.7e-20 Score=108.02 Aligned_cols=105 Identities=24% Similarity=0.305 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
|++|++++..++..+++++|++++|+|.+++.+++....|+..+..... .++|+++++||+|+.+.. ..+++.+...
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 133 (162)
T cd04123 55 DTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK 133 (162)
T ss_pred ECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999988888888765422 378999999999986532 2223222211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++|++++.|++++++++.+.+
T Consensus 134 -----~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 134 -----SVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred -----HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 2345789999999999999999998764
No 112
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=4.8e-19 Score=106.45 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-----CHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-----KPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----~~~~~~~ 75 (113)
|++|++++..++..|+.++|++++|+|.+++.+++....|+..+... .++|+++|+||+|+.+.. ..+++.+
T Consensus 60 d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 136 (169)
T cd01892 60 EVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCR 136 (169)
T ss_pred ecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHH
Confidence 78999999999999999999999999999998998888888876332 478999999999985432 1234444
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.++.. +++++||+++.|++++|+.+++.+
T Consensus 137 ~~~~~-------~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 137 KLGLP-------PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred HcCCC-------CCEEEEeccCccHHHHHHHHHHHh
Confidence 33321 247999999999999999998754
No 113
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.81 E-value=7.3e-19 Score=104.52 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..+++.++++++|+|.+++.++.....|+..+.......++|+++++||+|+.+. ....+......
T Consensus 54 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~ 133 (164)
T cd04139 54 DTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR 133 (164)
T ss_pred ECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH
Confidence 7999999999999999999999999999999999999888888876544467999999999998652 22222111111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+++
T Consensus 134 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 134 -----QWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred -----HhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1235789999999999999999998764
No 114
>PLN03108 Rab family protein; Provisional
Probab=99.81 E-value=1e-19 Score=112.75 Aligned_cols=105 Identities=22% Similarity=0.347 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+. .+..+..+..
T Consensus 61 Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~- 138 (210)
T PLN03108 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA- 138 (210)
T ss_pred eCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-
Confidence 899999999999999999999999999999999999888988775432 257899999999998653 2333222221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 139 ----~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 139 ----KEHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998654
No 115
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.81 E-value=4.5e-19 Score=105.48 Aligned_cols=106 Identities=23% Similarity=0.320 Sum_probs=86.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC--CCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD--AMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~ 78 (113)
|++|++++..++..++.++|++|+|||++++.+++....|+..+..... .+.|+++++||.|+.+ ..+.++..+...
T Consensus 54 D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~ 132 (162)
T PF00071_consen 54 DTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK 132 (162)
T ss_dssp EETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH
Confidence 7899999999999999999999999999999999999999999876532 4689999999999875 334433322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+.++++|||+++.|+.++|..+++.+.
T Consensus 133 -----~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 133 -----ELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp -----HTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred -----HhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 12367999999999999999999998763
No 116
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.80 E-value=1.8e-18 Score=103.71 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC---CCCCeEEEEEeCCCCCC--CCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPD--AMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~--~~~~~~~~~ 75 (113)
|+||++.+..++..+++++|++|+|+|++++.+++....|...+..... ..++|+++++||+|+.. ....++...
T Consensus 55 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 134 (172)
T cd01862 55 DTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQ 134 (172)
T ss_pred eCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHH
Confidence 8999999999999999999999999999998888888788776644321 23789999999999973 223333322
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... ...++++++||+++.|++++++++.+.+
T Consensus 135 ~~~~----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 135 WCQS----NGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred HHHH----cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 2221 1235799999999999999999988654
No 117
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.80 E-value=1.5e-19 Score=108.66 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=81.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHH----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE---- 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~---- 75 (113)
||||++.+..++..++.++|++++|+|.+++.+++... .|+..+... ..++|+++++||+|+.+.........
T Consensus 54 Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~ 131 (174)
T cd04135 54 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKE 131 (174)
T ss_pred eCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccC
Confidence 89999999999999999999999999999999988885 577776543 36799999999999865321111000
Q ss_pred -----HhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 -----KLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 -----~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+.......+ .++++|||+++.|++++|+.++..+
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 132 KPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 00000111223 3689999999999999999998754
No 118
>KOG0083|consensus
Probab=99.80 E-value=8.2e-20 Score=103.76 Aligned_cols=102 Identities=20% Similarity=0.346 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-----CCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-----MKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~ 75 (113)
||+||++|++....|+.+||++++++|+.+..+|+.+..|+.++.+... ..+.+.+++||+|+... ...+.+++
T Consensus 53 dtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~ 131 (192)
T KOG0083|consen 53 DTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAE 131 (192)
T ss_pred eccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHH
Confidence 8999999999999999999999999999999999999999999865421 35678999999998442 22445666
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.++++ +.++||++|.+++..|-.+...+
T Consensus 132 ~y~ip--------fmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 132 AYGIP--------FMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred HHCCC--------ceeccccccccHhHHHHHHHHHH
Confidence 66654 55999999999999998887654
No 119
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=4e-19 Score=106.37 Aligned_cols=106 Identities=20% Similarity=0.288 Sum_probs=82.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
|++|++.+...+..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+.... .+..+.+..
T Consensus 62 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~ 140 (169)
T cd04114 62 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFSD 140 (169)
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence 799999999999999999999999999999888888888887775432 246899999999998653321 222222221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++||+++.|+.++|+++.+.+
T Consensus 141 ----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 141 ----AQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred ----HcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1235789999999999999999998754
No 120
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=2.2e-18 Score=103.12 Aligned_cols=107 Identities=16% Similarity=0.070 Sum_probs=80.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~ 76 (113)
||||++++...+..++..+|++++|+|++++.+++... .|+..+.... .+.|+++++||+|+.+.... .+....
T Consensus 53 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~ 130 (166)
T cd01893 53 DTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLP 130 (166)
T ss_pred eCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHH
Confidence 89999999888888899999999999999999998875 5777665432 47899999999999764432 111111
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... +. ...++++|||+++.|++++|+.+.+.+
T Consensus 131 ~~~~-~~-~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 131 IMNE-FR-EIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHHH-Hh-cccEEEEeccccccCHHHHHHHHHHHh
Confidence 1100 00 112688999999999999999988764
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.78 E-value=7.5e-19 Score=106.29 Aligned_cols=106 Identities=23% Similarity=0.303 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++++.++..++..++++++|+|.++..+++....|+..+.+.....+.|+++++||+|+... ....+... +.
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~ 133 (180)
T cd04137 55 DTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA 133 (180)
T ss_pred ECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH
Confidence 8999999999999999999999999999999999999888888876543457899999999998642 22222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|+.+++.++.+.+
T Consensus 134 ----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 134 ----ESWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11235789999999999999999998764
No 122
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.78 E-value=3.7e-18 Score=105.02 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=78.3
Q ss_pred CCCCccCchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc--CCCCCeEEEEEeCCCCCCCC--
Q psy17510 1 DVGGQDKIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR--EMRDAIILIFANKQDLPDAM-- 68 (113)
Q Consensus 1 D~~G~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~D~~~~~-- 68 (113)
||||++++.. ....+++.+|++++|||++++.+++....|+..+.+.. ...++|+++++||+|+.+..
T Consensus 55 Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~ 134 (198)
T cd04142 55 DVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA 134 (198)
T ss_pred eCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc
Confidence 7888765421 23346789999999999999999999999988886543 13578999999999996532
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+..+... +..++++++|||++|.|++++|+.+++.+
T Consensus 135 ~~~~~~~~~~----~~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 135 PRHVLSVLVR----KSWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred cHHHHHHHHH----HhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 2222211111 11356799999999999999999998654
No 123
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.78 E-value=7e-18 Score=101.84 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=76.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||++++..++..++..+|++|+|+|+++..+......|.... . .++|+++++||+|+.+... .+++.+.+
T Consensus 73 Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~ 147 (179)
T cd01890 73 DTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSADPERVKQQIEDVL 147 (179)
T ss_pred ECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 89999999999999999999999999998765555444443322 2 4689999999999864321 12333333
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+. ...+++++||++|.|++++++++.+.+.
T Consensus 148 ~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 148 GL-----DPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CC-----CcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 32 1235889999999999999999988753
No 124
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.78 E-value=4.5e-18 Score=102.37 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=79.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~ 78 (113)
||+|++++..++..++.++|++++|+|.+++.+++... .|+..+.+. ..++|+++++||+|+.+.... .++.....
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~ 132 (175)
T cd01870 55 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQ 132 (175)
T ss_pred eCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccC
Confidence 89999999999888999999999999999988888875 577766543 257899999999998643211 11110000
Q ss_pred --------CCccCC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 --------LTRIRD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 --------~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...... ..+++++|||+++.|++++|+++++..
T Consensus 133 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 133 EPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 000001 234789999999999999999998754
No 125
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.78 E-value=1.3e-18 Score=103.04 Aligned_cols=106 Identities=20% Similarity=0.279 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
|+||++.+..++..+++.+|++++|+|.+++.+++....|+..+.+.....+.|+++++||+|+.+. ...++......
T Consensus 53 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 132 (160)
T cd00876 53 DTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK 132 (160)
T ss_pred ECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH
Confidence 7999999999999999999999999999999899998888888866543357999999999998652 22222222211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++|++++.|+++++++|.+.+
T Consensus 133 -----~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 133 -----EWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred -----HcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 1225789999999999999999998753
No 126
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=1.5e-17 Score=98.00 Aligned_cols=103 Identities=23% Similarity=0.371 Sum_probs=83.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC--CCCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP--DAMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~--~~~~~~~~~~~~~ 78 (113)
|+||++.+...+..+++++|++++|+|.+++.+++....|+..+.... ..+.|+++++||+|+. ......++.+...
T Consensus 55 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 133 (159)
T cd00154 55 DTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK 133 (159)
T ss_pred ecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH
Confidence 899999999999999999999999999999888998888998886642 2468999999999995 2233333333222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
...++++++||+++.|++++++++.+
T Consensus 134 -----~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 134 -----ENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred -----HcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 13567999999999999999999863
No 127
>KOG0393|consensus
Probab=99.75 E-value=5.5e-18 Score=102.79 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=84.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||+||+.|..++...|.++|.++++|++.++.+++.. ..|+.++... .++.|+++||+|.|++++....+-....+.
T Consensus 59 DTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~ 136 (198)
T KOG0393|consen 59 DTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGL 136 (198)
T ss_pred ecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccC
Confidence 8999999999998899999999999999999999986 6899999776 489999999999999853321111111111
Q ss_pred Ccc---------CC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRI---------RD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~---------~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... .. ....+++|||++..|++++|+..++..
T Consensus 137 ~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 137 EPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred CcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 111 11 225699999999999999999887653
No 128
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=3.3e-18 Score=104.28 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=79.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-H--------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMK-P-------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~-------- 70 (113)
||+|++++...+..++.+++++++++|.+++.+++... .|+..+.+. ..+.|+++++||+|+.+... .
T Consensus 55 Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 132 (187)
T cd04129 55 DTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRF 132 (187)
T ss_pred ECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCc
Confidence 78999999888777889999999999999988998886 588887653 25699999999999854211 0
Q ss_pred --HHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 71 --HEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 71 --~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+....+. +..+ +++++|||+++.|++++|+++.+.+
T Consensus 133 ~~~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 133 VPIQQGKRVA----KEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred CCHHHHHHHH----HHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 01111111 1122 3689999999999999999998764
No 129
>KOG0074|consensus
Probab=99.74 E-value=4.1e-18 Score=97.63 Aligned_cols=111 Identities=42% Similarity=0.798 Sum_probs=100.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++||...+..|..||.+.|++|||+|.++...+++....+.+++........|+++..||.|+..+...++++.+....
T Consensus 68 DiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~ 147 (185)
T KOG0074|consen 68 DIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLA 147 (185)
T ss_pred ecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchh
Confidence 78999999999999999999999999988888899888888888777666789999999999998888888998888888
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.++.+.|++.+|||+++.|+.+..+|+.+..
T Consensus 148 ~lrdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 148 GLRDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred hhhhceEEeeeCccccccCccCcchhhhcCC
Confidence 8888899999999999999999999887654
No 130
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.74 E-value=4.3e-18 Score=101.92 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=78.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH-------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHE------- 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~------- 72 (113)
||||++++...+..++..+|++++|+|++++.++.... .|+..+... ..++|+++++||+|+.+......
T Consensus 54 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 131 (171)
T cd00157 54 DTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKE 131 (171)
T ss_pred eCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCC
Confidence 89999999888888999999999999999988887764 466666543 24799999999999865432210
Q ss_pred -HHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHh
Q psy17510 73 -IQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 73 -~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
+............++ +++++||+++.|++++++++++
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 132 PITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred ccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 001111111111223 7999999999999999999875
No 131
>KOG0097|consensus
Probab=99.74 E-value=1.9e-17 Score=95.12 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-HHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~ 79 (113)
||+||++|+...+.|+.++.+.+.|+|++.+.++.....|+....... .++..+++++||.|+....+.. +-.+.+..
T Consensus 66 dtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~fae 144 (215)
T KOG0097|consen 66 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAE 144 (215)
T ss_pred ecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHh
Confidence 899999999999999999999999999999999999999999886542 3677899999999997654422 33333332
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+++-++++||++|+++++.|-....+
T Consensus 145 ----engl~fle~saktg~nvedafle~akk 171 (215)
T KOG0097|consen 145 ----ENGLMFLEASAKTGQNVEDAFLETAKK 171 (215)
T ss_pred ----hcCeEEEEecccccCcHHHHHHHHHHH
Confidence 356678899999999999988765544
No 132
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.71 E-value=2e-16 Score=98.33 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++++..++..++..++++++|+|.++..++.....|+..+... ..+.|+++++||+|+.+.....+....
T Consensus 64 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~---- 137 (215)
T PTZ00132 64 DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITF---- 137 (215)
T ss_pred ECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHH----
Confidence 79999999999999999999999999999999999999998888643 357899999999998543221111111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....++.++++||+++.|++++|.++++.+
T Consensus 138 -~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 138 -HRKKNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred -HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112345789999999999999999998764
No 133
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.70 E-value=1.9e-16 Score=94.73 Aligned_cols=108 Identities=23% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCCCcc----CchhhHHh---hhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQD----KIRPLWRH---YYTGTQGLIFVVDCADR-DRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~----~~~~~~~~---~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||+. ..+.+... .+..+|++++|+|++++ .+++....|.+.+.... ...++|+++++||+|+.+.....
T Consensus 54 DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 133 (170)
T cd01898 54 DIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF 133 (170)
T ss_pred ecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH
Confidence 899963 22223333 34569999999999988 67888788877775432 12468999999999986644333
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+... ....+++++||+++.|++++++++.+.+
T Consensus 134 ~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 134 ELLKELLKE---LWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred HHHHHHHhh---CCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 222222111 0245689999999999999999998753
No 134
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=6.6e-16 Score=91.98 Aligned_cols=103 Identities=26% Similarity=0.344 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|||||+||+.||+-+.+++.+.|+++|.+.+..+ .....++.+... ..+|+++++||+|+.+..+.+++.+.+...
T Consensus 74 gtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~ 149 (187)
T COG2229 74 GTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDALPPEKIREALKLE 149 (187)
T ss_pred cCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCCCHHHHHHHHHhc
Confidence 6999999999999999999999999999988777 344555555321 239999999999999999999888887754
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
. ...+++..+|..+.+..+.++.+...
T Consensus 150 ~---~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 150 L---LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred c---CCCceeeeecccchhHHHHHHHHHhh
Confidence 2 35679999999999998888877654
No 135
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.69 E-value=5e-16 Score=95.76 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=58.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc------------------CCCCCeEEEEEeCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR------------------EMRDAIILIFANKQ 62 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~p~ilv~nK~ 62 (113)
||+|+++|+.++..|+.++|++|+|||++++.+++....|+.++.+.. ...++|+++|+||.
T Consensus 60 DtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~ 139 (202)
T cd04102 60 DVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKL 139 (202)
T ss_pred ecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECc
Confidence 899999999999999999999999999999999999999999986521 12468999999999
Q ss_pred CCCC
Q psy17510 63 DLPD 66 (113)
Q Consensus 63 D~~~ 66 (113)
|+.+
T Consensus 140 Dl~~ 143 (202)
T cd04102 140 DQIP 143 (202)
T ss_pred cchh
Confidence 9865
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.69 E-value=1.7e-16 Score=94.31 Aligned_cols=103 Identities=24% Similarity=0.177 Sum_probs=69.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||||+++|......++..+|++++|+|+++.. .......+..+... ...|+++++||+|+.+... .+++.+.
T Consensus 57 DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~-~~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~ 132 (164)
T cd04171 57 DVPGHEKFIKNMLAGAGGIDLVLLVVAADEGI-MPQTREHLEILELL---GIKRGLVVLTKADLVDEDWLELVEEEIREL 132 (164)
T ss_pred ECCChHHHHHHHHhhhhcCCEEEEEEECCCCc-cHhHHHHHHHHHHh---CCCcEEEEEECccccCHHHHHHHHHHHHHH
Confidence 89999999877777889999999999997621 12222222222111 2249999999999865321 1222222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
+.... ...++++++||+++.|++++++.+.+
T Consensus 133 ~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 133 LAGTF--LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHhcC--cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 22110 13567999999999999999998864
No 137
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.68 E-value=6.5e-16 Score=92.22 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHH---h
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK---L 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~---~ 77 (113)
||||++.+..++..++..+|++++|+|+++... ......+..+.. .++|+++++||+|+.+.. ...+... +
T Consensus 56 DtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-~~~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~ 129 (168)
T cd01887 56 DTPGHEAFTNMRARGASLTDIAILVVAADDGVM-PQTIEAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSEL 129 (168)
T ss_pred eCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-HHHHHHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHh
Confidence 899999999999999999999999999987432 122223333322 468999999999986432 2222221 1
Q ss_pred CCCc--cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTR--IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~--~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... .....++++++||+++.|+.++++++.+..
T Consensus 130 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 130 GLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred hccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1111 112456899999999999999999998754
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.65 E-value=1.2e-15 Score=91.21 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCcEEEEEEECCChhh--HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 18 GTQGLIFVVDCADRDR--IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
.+|++++|+|++++.+ .+....|+..+... ..+.|+++++||+|+.+.....+. +.+ .....+++++|||+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~-~~~----~~~~~~~~~~~Sa~ 151 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEI-EEE----EELEGEEVLKISTL 151 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHH-HHh----hhhccCceEEEEec
Confidence 3689999999987654 35555677776442 247899999999998653322221 111 12245679999999
Q ss_pred CCCCHHHHHHHHHhhc
Q psy17510 96 TADGLYEGLTWLTSNH 111 (113)
Q Consensus 96 ~~~~i~~~~~~l~~~~ 111 (113)
++.|++++++++.+.+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9999999999998765
No 139
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.65 E-value=1.1e-15 Score=94.43 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=71.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||+++|...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+..... ++.+.
T Consensus 89 DtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~ 165 (203)
T cd01888 89 DCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENYEQIKKF 165 (203)
T ss_pred ECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHHHHHHHH
Confidence 89999999888888888999999999998632111222223333221 235799999999986532211 12221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.. .....++++++||+++.|++++++++.+.+.
T Consensus 166 ~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 166 VKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred Hhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 111 1123567999999999999999999988654
No 140
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=1.1e-15 Score=100.35 Aligned_cols=107 Identities=21% Similarity=0.118 Sum_probs=76.2
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCCCCHH-
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMKPH- 71 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~- 71 (113)
||||.-. +...+..++++++++++|+|+++..+++....|..++... +...++|+++|+||+|+.+.....
T Consensus 212 D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~ 291 (335)
T PRK12299 212 DIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEERE 291 (335)
T ss_pred eCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHH
Confidence 7888632 3334445678899999999999877788888888877543 223478999999999986543221
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+..+.+. ....++++++||+++.|++++++++.+.+
T Consensus 292 ~~~~~~~----~~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 292 KRAALEL----AALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred HHHHHHH----HhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 1112111 12235789999999999999999998765
No 141
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.64 E-value=8.2e-15 Score=88.84 Aligned_cols=107 Identities=23% Similarity=0.218 Sum_probs=78.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~ 76 (113)
||||+..+...+..++..+|++++|+|.+.+.... ...++..+.. .++|+++++||+|+...... .++.+.
T Consensus 68 DtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~ 142 (189)
T cd00881 68 DTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKEL 142 (189)
T ss_pred eCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHH
Confidence 89999999999999999999999999998654332 2344444432 47899999999998753222 223333
Q ss_pred hCCCcc---------CCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 LGLTRI---------RDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~~~~~~---------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+..... .....+++++||+++.|++++++++.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 322111 224678999999999999999999988764
No 142
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.61 E-value=1.7e-15 Score=88.40 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=64.1
Q ss_pred CCCCc-----cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHH
Q psy17510 1 DVGGQ-----DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQ 74 (113)
Q Consensus 1 D~~G~-----~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~ 74 (113)
||||+ +.++.+.. .++++|++++|+|++++.++.. ..|.... ..|+++++||+|+.+. ...++..
T Consensus 41 Dt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~~~~~~~~~~ 111 (142)
T TIGR02528 41 DTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF-------VKPVIGLVTKIDLAEADVDIERAK 111 (142)
T ss_pred cCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-------cCCeEEEEEeeccCCcccCHHHHH
Confidence 89997 23444444 5889999999999998876543 2343321 2499999999998652 2222222
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHH
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 108 (113)
+..... ...+++++||+++.|++++|+++.
T Consensus 112 ~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 112 ELLETA----GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHc----CCCcEEEEecCCCCCHHHHHHHHh
Confidence 211110 112688999999999999999885
No 143
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.61 E-value=6.4e-15 Score=96.70 Aligned_cols=107 Identities=22% Similarity=0.194 Sum_probs=74.9
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+.+ +...+..++.+++++++|+|+++. .+++....|.+++... +...++|+++|+||+|+.+...
T Consensus 211 D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~ 290 (329)
T TIGR02729 211 DIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE 290 (329)
T ss_pred eCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH
Confidence 8898742 223334456789999999999875 5666666676666432 2235789999999999876433
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++.+.+.. ..+++++++||+++.|++++++++.+.+
T Consensus 291 ~~~~~~~l~~----~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 LAELLKELKK----ALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHH----HcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 3333333321 1235789999999999999999998765
No 144
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.61 E-value=9.2e-15 Score=102.22 Aligned_cols=102 Identities=24% Similarity=0.226 Sum_probs=76.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
||||+..|...+..++..||++++|+|+++..+......|.... . .++|+++++||+|+.+.... +++.+.+
T Consensus 76 DTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~l 150 (595)
T TIGR01393 76 DTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVI 150 (595)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHh
Confidence 89999999999999999999999999999865555444444333 2 36899999999998653211 2333333
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.. ...++++||++|.|++++++++.+.+.
T Consensus 151 g~~-----~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 151 GLD-----ASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred CCC-----cceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 321 124789999999999999999987653
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.61 E-value=9.7e-15 Score=84.84 Aligned_cols=105 Identities=30% Similarity=0.466 Sum_probs=79.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHH--HHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI--QEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~--~~~~~ 78 (113)
|++|+..+...+..++..+|++++|+|.+++.+......|...........++|+++++||+|+.+....... .....
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~ 130 (157)
T cd00882 51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA 130 (157)
T ss_pred ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH
Confidence 7899999988888899999999999999998887777766333322333468999999999998764433322 11111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....++++++|+.++.|+.++++++.+
T Consensus 131 ----~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 131 ----KELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred ----hhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 124567999999999999999999863
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.60 E-value=1.1e-14 Score=89.31 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=65.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||+++|..++..++.++|++++|+|+++.. ......++..+.. .++|+++++||+|+.+... ..++.+.+
T Consensus 71 DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 145 (194)
T cd01891 71 DTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred ECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999998642 2333444554432 4689999999999865322 12222222
Q ss_pred C-CC-ccCCCCeEEEeccccCCCCH
Q psy17510 78 G-LT-RIRDRNWYVQPSCATTADGL 100 (113)
Q Consensus 78 ~-~~-~~~~~~~~~~~~sa~~~~~i 100 (113)
. .. .....+++++++||++|.|+
T Consensus 146 ~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 146 IELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred HHhCCccccCccCEEEeehhccccc
Confidence 1 00 11224678999999999775
No 147
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.60 E-value=1.2e-14 Score=89.65 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=63.2
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
.+..+|++++|+|.+++.+......|...+... ...++|+++|+||+|+.+..... .. ......+++++||
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa 187 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISA 187 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEc
Confidence 366899999999999877766655555544332 22468999999999986532221 11 1223457899999
Q ss_pred cCCCCHHHHHHHHHhhc
Q psy17510 95 TTADGLYEGLTWLTSNH 111 (113)
Q Consensus 95 ~~~~~i~~~~~~l~~~~ 111 (113)
+++.|+++++++|...+
T Consensus 188 ~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 188 KTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998753
No 148
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.60 E-value=9.8e-15 Score=86.27 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=70.1
Q ss_pred CCCCccCchh------hHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRP------LWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~------~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+.. ++..++. .+|++++|+|.+++.. ...++..+.. .++|+++++||+|+.+......
T Consensus 49 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~ 121 (158)
T cd01879 49 DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLER---NLYLTLQLLE----LGLPVVVALNMIDEAEKRGIKI 121 (158)
T ss_pred ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchh---HHHHHHHHHH----cCCCEEEEEehhhhcccccchh
Confidence 8999987764 3566665 9999999999987533 2344444433 3689999999999865432211
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+.+. ...+++++++||.++.|+.++++++.+.+.
T Consensus 122 ~~~~~~----~~~~~~~~~iSa~~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 122 DLDKLS----ELLGVPVVPTSARKGEGIDELKDAIAELAE 157 (158)
T ss_pred hHHHHH----HhhCCCeEEEEccCCCCHHHHHHHHHHHhc
Confidence 111111 112356899999999999999999987653
No 149
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=7.2e-15 Score=99.52 Aligned_cols=105 Identities=16% Similarity=0.096 Sum_probs=71.4
Q ss_pred CCCCccCchhhH-----------HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC-CCC
Q psy17510 1 DVGGQDKIRPLW-----------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP-DAM 68 (113)
Q Consensus 1 D~~G~~~~~~~~-----------~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~ 68 (113)
||||+.++.... ..++..+|++++|+|++++.+..+. .++..+.+ .++|+++++||+|+. +..
T Consensus 226 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~ 300 (429)
T TIGR03594 226 DTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEK 300 (429)
T ss_pred ECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHH
Confidence 899986654321 3468899999999999976554443 44444433 468999999999987 222
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...++.+...........++++++||++|.|++++++++.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 301 TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 222333333211111245689999999999999999988764
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=8.6e-15 Score=100.24 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=70.9
Q ss_pred CCCCcc----------CchhhH-HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQD----------KIRPLW-RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~----------~~~~~~-~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||.. .|..+. ..++.++|++++|+|+++..+..+. .++..+.. .++|+++|+||+|+.+...
T Consensus 265 DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~----~~~piIiV~NK~Dl~~~~~ 339 (472)
T PRK03003 265 DTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ-RVLSMVIE----AGRALVLAFNKWDLVDEDR 339 (472)
T ss_pred ECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCChhH
Confidence 899953 333332 2367899999999999987666654 34554433 4789999999999965322
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+.+............+++++||++|.|++++|+.+.+.+
T Consensus 340 ~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 340 RYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 222222221111111335789999999999999999988654
No 151
>KOG4252|consensus
Probab=99.60 E-value=7.9e-16 Score=91.57 Aligned_cols=104 Identities=16% Similarity=0.301 Sum_probs=83.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||+||++|......||.+|.+.++||..++..+|+....|.+.+... ...+|.++|-||+|+.++.. ..++.. +.
T Consensus 75 dtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~-la 151 (246)
T KOG4252|consen 75 DTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEG-LA 151 (246)
T ss_pred HhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHH-HH
Confidence 79999999999999999999999999999999999999999999654 47899999999999976422 222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+...+.++.+|++...++..+|..|+..+
T Consensus 152 ----k~l~~RlyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 152 ----KKLHKRLYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred ----HHhhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 11223467999999999999999887643
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.60 E-value=1.4e-14 Score=87.03 Aligned_cols=107 Identities=21% Similarity=0.160 Sum_probs=72.1
Q ss_pred CCCCccC----chhh---HHhhhcCCcEEEEEEECCCh------hhHHHHHHHHHHHHcCcC------CCCCeEEEEEeC
Q psy17510 1 DVGGQDK----IRPL---WRHYYTGTQGLIFVVDCADR------DRIDEARQELHRIINDRE------MRDAIILIFANK 61 (113)
Q Consensus 1 D~~G~~~----~~~~---~~~~~~~~~~vi~v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~p~ilv~nK 61 (113)
||||... .+.+ +..++.++|++++|+|.++. .+++....|...+..... ..++|+++++||
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 129 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNK 129 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEc
Confidence 8999632 2222 23357789999999999887 466666666666654321 146899999999
Q ss_pred CCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 62 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 62 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+|+.+.....+.. ..........+++++||+++.|++++++++...
T Consensus 130 ~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 130 IDLDDAEELEEEL---VRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhcCchhHHHHHH---HHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9986543322221 001111234568999999999999999998764
No 153
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.59 E-value=7.5e-15 Score=92.96 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=75.2
Q ss_pred cCchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-HHHHHhCCCccC
Q psy17510 6 DKIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKLGLTRIR 83 (113)
Q Consensus 6 ~~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~ 83 (113)
++++.+.+.+++++|++++|+|++++. +++....|+..+.. .++|+++++||+|+.+..... +..+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 788888999999999999999999876 88888899886643 579999999999996432211 222222 1
Q ss_pred CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 84 DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 84 ~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+++++++||+++.|++++|+.+...
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcCC
Confidence 245679999999999999999987653
No 154
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.59 E-value=1.7e-14 Score=85.91 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=66.9
Q ss_pred CCCCccCchhhH----HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy17510 1 DVGGQDKIRPLW----RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~----~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~ 76 (113)
||||.......+ ...++.+|++++|+|+++..+. ...|+..+ ..++|+++++||+|+.+ .+...+.+.
T Consensus 43 DtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~ 114 (158)
T PRK15467 43 DTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR--LPAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKL 114 (158)
T ss_pred cCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc--cCHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHH
Confidence 899973222212 2347899999999999876543 22344443 13579999999999854 333333332
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... ....|++++||++++|++++++.+.+.+
T Consensus 115 ~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 115 LLET---GFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred HHHc---CCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 2111 1225899999999999999999998764
No 155
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.58 E-value=4.9e-15 Score=90.42 Aligned_cols=106 Identities=25% Similarity=0.202 Sum_probs=75.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||+..|...+......+|++|+|+|+.+... ....+.+..+.. .++|+++++||+|+.. .... ++...
T Consensus 76 DtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~ 149 (188)
T PF00009_consen 76 DTPGHEDFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLIE-KELEEIIEEIKEK 149 (188)
T ss_dssp EESSSHHHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSSH-HHHHHHHHHHHHH
T ss_pred ccccccceeecccceecccccceeeeecccccc-cccccccccccc----cccceEEeeeeccchh-hhHHHHHHHHHHH
Confidence 899999999988889999999999999986532 223444555543 5789999999999862 1111 22212
Q ss_pred h-CCCccCC-CCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 L-GLTRIRD-RNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~-~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+ ....... ..++++.+||++|.|+.++++.+.+.++
T Consensus 150 l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 150 LLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2 1111222 3689999999999999999999998765
No 156
>PRK04213 GTP-binding protein; Provisional
Probab=99.56 E-value=5.3e-14 Score=86.54 Aligned_cols=107 Identities=22% Similarity=0.197 Sum_probs=68.5
Q ss_pred CCCC-----------ccCchhhHHhhhc----CCcEEEEEEECCChhhH----------HHHHHHHHHHHcCcCCCCCeE
Q psy17510 1 DVGG-----------QDKIRPLWRHYYT----GTQGLIFVVDCADRDRI----------DEARQELHRIINDREMRDAII 55 (113)
Q Consensus 1 D~~G-----------~~~~~~~~~~~~~----~~~~vi~v~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~p~ 55 (113)
|||| +++++.++..|+. .++++++|+|.+..... .....++..+.. .++|+
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~p~ 133 (201)
T PRK04213 58 DLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE----LGIPP 133 (201)
T ss_pred eCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----cCCCe
Confidence 8999 6778877776664 35788999998643211 011222333321 47899
Q ss_pred EEEEeCCCCCCCC--CHHHHHHHhCCC-ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 56 LIFANKQDLPDAM--KPHEIQEKLGLT-RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 56 ilv~nK~D~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
++++||+|+.+.. ...++.+.++.. .......+++++||++| |+++++++|.+.+.
T Consensus 134 iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 134 IVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred EEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 9999999986533 233444444431 11111236899999999 99999999987653
No 157
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.56 E-value=2.4e-14 Score=88.40 Aligned_cols=109 Identities=26% Similarity=0.361 Sum_probs=77.6
Q ss_pred CCCCccCchhhHHhhhcCC-cEEEEEEECCCh-hhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGT-QGLIFVVDCADR-DRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~-~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~ 76 (113)
||||+++++.++..+++.+ +++|||+|.++. .++.....++..+..... ..++|+++++||+|+..+.....+.+.
T Consensus 54 D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~ 133 (203)
T cd04105 54 DVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQ 133 (203)
T ss_pred ECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHH
Confidence 8999999999999999999 999999999986 677777777666543321 257999999999998765332221110
Q ss_pred h-----------CCC----------------------cc--CCCCeEEEeccccCCC-CHHHHHHHHHh
Q psy17510 77 L-----------GLT----------------------RI--RDRNWYVQPSCATTAD-GLYEGLTWLTS 109 (113)
Q Consensus 77 ~-----------~~~----------------------~~--~~~~~~~~~~sa~~~~-~i~~~~~~l~~ 109 (113)
+ ... .+ ....+.+.++|++.+. |++.+.+|+..
T Consensus 134 le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 134 LEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 000 00 1134678999998776 69999998864
No 158
>PLN00023 GTP-binding protein; Provisional
Probab=99.56 E-value=1.8e-14 Score=93.77 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=58.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-----------CCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-----------MRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~D~~~ 66 (113)
||+|+++|+.++..|+.+++++|+|||+++..+++.+..|+..+..... ..++|+++|+||+|+.+
T Consensus 89 DTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 89 DVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 8999999999999999999999999999999999999999999875421 12589999999999865
No 159
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.56 E-value=7.3e-14 Score=97.87 Aligned_cols=102 Identities=22% Similarity=0.218 Sum_probs=74.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
||||+..|...+..++..+|++|+|+|+++.........|.... . .++|+++++||+|+.+.... .++.+.+
T Consensus 80 DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~l 154 (600)
T PRK05433 80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADPERVKQEIEDVI 154 (600)
T ss_pred ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccHHHHHHHHHHHh
Confidence 89999999999999999999999999998754433333333222 2 46899999999998653221 2333333
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.. ...++.+||++|.|+.++++++.+.+.
T Consensus 155 g~~-----~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 155 GID-----ASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCC-----cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 321 234889999999999999999987653
No 160
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.55 E-value=5.7e-14 Score=82.78 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=66.2
Q ss_pred CCCCccCchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||+..+.. .+..++..+|++++|+|..+..+... ..+...+ +. .+.|+++++||+|+.+....
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~-~~---~~~piiiv~nK~D~~~~~~~-- 123 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPAD-EEIAKYL-RK---SKKPVILVVNKVDNIKEEDE-- 123 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccH-HHHHHHH-Hh---cCCCEEEEEECcccCChHHH--
Confidence 8999988654 34557889999999999976433222 1222222 21 35899999999998653222
Q ss_pred HHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..... ..+. +++++|++++.|++++++++.+.+
T Consensus 124 -~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 124 -AAEFY-----SLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred -HHHHH-----hcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 11111 0112 478999999999999999998753
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=7.3e-14 Score=95.73 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCCCccC--------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDK--------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~--------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++. +...+..+++.||++|+|+|+++..+..+ ..+...+.. .++|+++|+||+|+..... +
T Consensus 92 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~~--~ 164 (472)
T PRK03003 92 DTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGEA--D 164 (472)
T ss_pred eCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccch--h
Confidence 8999763 44456678999999999999997654432 233333322 4789999999999864221 1
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..... .+ ..+++||++|.|+++++++++..+
T Consensus 165 ~~~~~~~g----~~-~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 165 AAALWSLG----LG-EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred hHHHHhcC----CC-CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 11211111 11 236899999999999999998765
No 162
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.55 E-value=6.1e-14 Score=85.82 Aligned_cols=107 Identities=19% Similarity=0.047 Sum_probs=68.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||||+..+..........+|++++|+|+++.........+. .. .. .++|+++++||+|+..... .+++.+.
T Consensus 74 DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 148 (192)
T cd01889 74 DCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI---LCKKLIVVLNKIDLIPEEERERKIEKMKKK 148 (192)
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHH
Confidence 89999665444334556789999999998743333222221 11 11 3579999999999864322 1222222
Q ss_pred hCCCc--cCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 LGLTR--IRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~~~~~--~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.... .....++++++||+++.|++++++++..++.
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 21110 1124568999999999999999999998764
No 163
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.55 E-value=5.5e-14 Score=98.12 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=72.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|||||+.|..++..++..+|++++|+|+++.. .....+.+.... ..++|+++++||+|+++. +..++.+.+...
T Consensus 141 DTPGhe~F~~~r~rga~~aDiaILVVda~dgv-~~qT~e~i~~~~----~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~ 214 (587)
T TIGR00487 141 DTPGHEAFTSMRARGAKVTDIVVLVVAADDGV-MPQTIEAISHAK----AANVPIIVAINKIDKPEA-NPDRVKQELSEY 214 (587)
T ss_pred ECCCCcchhhHHHhhhccCCEEEEEEECCCCC-CHhHHHHHHHHH----HcCCCEEEEEECcccccC-CHHHHHHHHHHh
Confidence 89999999999999999999999999988632 122223333332 247899999999998652 333333322111
Q ss_pred cc----CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RI----RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~----~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+ -...++++++||++|.|++++++++..
T Consensus 215 g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 215 GLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred hhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 00 012357999999999999999998864
No 164
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.54 E-value=1.4e-13 Score=80.72 Aligned_cols=106 Identities=25% Similarity=0.202 Sum_probs=74.2
Q ss_pred CCCCccCchh-------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDKIRP-------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~-------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
||||+..+.. .+..++..+|++++|+|.++........ +...... .+.|+++++||+|+.........
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHH
Confidence 7899876643 4445889999999999999865544433 3334322 57899999999998764444333
Q ss_pred HHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+............+++++||+++.|+.++++++.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 126 LELRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred HHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 22112122234567899999999999999999998753
No 165
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.54 E-value=8.5e-14 Score=98.90 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++.|..++..++..+|++++|+|+++.... ...+.+..+. ..++|+++++||+|+.+. +..++.+.+...
T Consensus 301 DTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~-QT~E~I~~~k----~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~ 374 (742)
T CHL00189 301 DTPGHEAFSSMRSRGANVTDIAILIIAADDGVKP-QTIEAINYIQ----AANVPIIVAINKIDKANA-NTERIKQQLAKY 374 (742)
T ss_pred ECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCCh-hhHHHHHHHH----hcCceEEEEEECCCcccc-CHHHHHHHHHHh
Confidence 8999999999999999999999999999864221 2222333332 257899999999998652 233333332211
Q ss_pred -cc---CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 -RI---RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 -~~---~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. .+..++++++||++|.|+.++++++...
T Consensus 375 ~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 375 NLIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 11 1234789999999999999999998764
No 166
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.54 E-value=9.4e-14 Score=91.96 Aligned_cols=99 Identities=23% Similarity=0.144 Sum_probs=67.5
Q ss_pred CCCCc---------cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQ---------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~---------~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||+|. +.|++.+. ++..||++++|+|++++.+.+....|...+... ...++|+++|+||+|+.+. .
T Consensus 243 DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~---~ 317 (351)
T TIGR03156 243 DTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDE---P 317 (351)
T ss_pred ecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCCh---H
Confidence 89997 23333333 578999999999999887666554444333221 1246899999999998652 2
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
++..... ...+++.+||+++.|++++++++...
T Consensus 318 ~v~~~~~------~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 318 RIERLEE------GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred hHHHHHh------CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2211111 11247899999999999999998764
No 167
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.53 E-value=1.3e-13 Score=98.68 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=72.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
|||||+.|..++..++..+|++|+|+|+++... ..+...+.... ..++|+++++||+|+.+. +...+...+..
T Consensus 343 DTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-~qT~e~i~~a~----~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~ 416 (787)
T PRK05306 343 DTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-PQTIEAINHAK----AAGVPIIVAINKIDKPGA-NPDRVKQELSEY 416 (787)
T ss_pred ECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-HhHHHHHHHHH----hcCCcEEEEEECcccccc-CHHHHHHHHHHh
Confidence 899999999999999999999999999986321 22222233332 257899999999999652 33333222211
Q ss_pred Ccc---CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 80 TRI---RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 80 ~~~---~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
... ....++++++||++|.|++++++++..
T Consensus 417 ~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 417 GLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred cccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 111 123478999999999999999998864
No 168
>KOG1673|consensus
Probab=99.53 E-value=3.3e-14 Score=82.90 Aligned_cols=108 Identities=11% Similarity=0.118 Sum_probs=81.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
|.+|++++..+..-.++++-+++|+||.+.+.+++....|+++.+..+. ..+| +++|+|.|.--... .++-.....
T Consensus 75 dlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qa 152 (205)
T KOG1673|consen 75 DLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQA 152 (205)
T ss_pred ecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999977532 3355 78899999532222 222222222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+.+..+.+++.||+....+++++|+-+...
T Consensus 153 r~YAk~mnAsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 153 RKYAKVMNASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred HHHHHHhCCcEEEeeccccccHHHHHHHHHHH
Confidence 22333355578999999999999999976543
No 169
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.52 E-value=2.1e-13 Score=79.93 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=75.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh-hhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR-DRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
|+||+.+++.++..+...++++++++|.... .++.... .|...+..... .+.|+++++||+|+..........+.+.
T Consensus 56 D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 134 (161)
T TIGR00231 56 DTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFA 134 (161)
T ss_pred ECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHh
Confidence 8999999999999999999999999999876 5555554 55555544322 2789999999999865332223333222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHH
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLT 108 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 108 (113)
.. ...+++++||+++.|+.++++++.
T Consensus 135 ~~----~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KL----NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hc----cCCceEEeecCCCCCHHHHHHHhh
Confidence 21 234589999999999999999874
No 170
>KOG3883|consensus
Probab=99.52 E-value=9.1e-14 Score=80.89 Aligned_cols=108 Identities=19% Similarity=0.297 Sum_probs=82.4
Q ss_pred CCCCccCc-hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKI-RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||+|...+ ..+-++|++-+|++++||++.++.+|+....+-+.+-+...-+.+|+++.+||.|+.++.. +......
T Consensus 66 DTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~---vd~d~A~ 142 (198)
T KOG3883|consen 66 DTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE---VDMDVAQ 142 (198)
T ss_pred ecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh---cCHHHHH
Confidence 79998887 5678899999999999999999999888766555565555556789999999999865322 2222222
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......+..++++|.+...+-+.|..+...+
T Consensus 143 ~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 143 IWAKREKVKLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred HHHhhhheeEEEEEeccchhhhhHHHHHHHhc
Confidence 33345567789999999999999998887643
No 171
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.52 E-value=2.3e-13 Score=87.38 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCCccCch-h-------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIR-P-------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~-~-------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||..... . ....++.++|++++|+|+++..+.. ..++..+.. .+.|+++++||+|+.+......
T Consensus 54 DTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~~~ 127 (270)
T TIGR00436 54 DTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDKLLP 127 (270)
T ss_pred ECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHHHHH
Confidence 899975431 1 1345788999999999999765543 333444422 4689999999999864221111
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
....+... ....+++++||++|.|++++++++.+.+.
T Consensus 128 ~~~~~~~~---~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 128 LIDKYAIL---EDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred HHHHHHhh---cCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 11111110 11126899999999999999999987653
No 172
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.51 E-value=2.5e-13 Score=84.44 Aligned_cols=110 Identities=26% Similarity=0.309 Sum_probs=79.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-HHHHHh-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKL- 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~- 77 (113)
||+|+++++.++..|+.+++++++++|.++. ...+....|...+..... .+.|+++++||+|+....... .+...+
T Consensus 60 Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 138 (219)
T COG1100 60 DTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLN 138 (219)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhh
Confidence 8999999999999999999999999999984 455556788888766422 468999999999997653211 111110
Q ss_pred ---------CCCcc-CCCCeEEEecccc--CCCCHHHHHHHHHhhc
Q psy17510 78 ---------GLTRI-RDRNWYVQPSCAT--TADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ---------~~~~~-~~~~~~~~~~sa~--~~~~i~~~~~~l~~~~ 111 (113)
..... ......++++|++ ++.++.++|..+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 139 REVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred cCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence 00000 0122338899999 9999999999887654
No 173
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.51 E-value=9.3e-14 Score=94.62 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCCCccCchhh--------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPL--------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+... ...++..+|++++|+|.+++.+.+....|. . ..++|+++|+||+|+.+.....
T Consensus 269 DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~-~------~~~~piiiV~NK~DL~~~~~~~- 340 (449)
T PRK05291 269 DTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILE-E------LKDKPVIVVLNKADLTGEIDLE- 340 (449)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHH-h------cCCCCcEEEEEhhhccccchhh-
Confidence 89998765543 223788999999999999876665433332 2 2568999999999986532221
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++||+++.|++++++++.+.+
T Consensus 341 ----------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 341 ----------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ----------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 12234688999999999999999998754
No 174
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.51 E-value=1e-13 Score=93.41 Aligned_cols=106 Identities=18% Similarity=0.138 Sum_probs=72.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~ 76 (113)
||||+++|.+.+......+|++++|+|+++........+.+..+.. ....|+++++||+|+.+.... .++.+.
T Consensus 86 DtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 86 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI---IGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred ECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 8999999998888888899999999999864212222333333321 123579999999998653221 112111
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+. .. ....++++++||+++.|+++++++|...+
T Consensus 163 l~-~~-~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 163 VK-GT-VAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hh-hc-ccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 11 11 12357899999999999999999998754
No 175
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.50 E-value=3.5e-13 Score=79.34 Aligned_cols=94 Identities=19% Similarity=0.081 Sum_probs=67.5
Q ss_pred CCCCccCchhh--------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPL--------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||...+... ...++.++|++++|+|++++.+......+.. ..++|+++++||+|+.+....
T Consensus 55 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-- 125 (157)
T cd04164 55 DTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-- 125 (157)
T ss_pred ECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc--
Confidence 78997665321 2346779999999999997655554332222 257899999999998653222
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......+++++||+++.|+.++++++...+
T Consensus 126 --------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 --------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred --------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 1122345799999999999999999998764
No 176
>KOG0096|consensus
Probab=99.49 E-value=2.4e-14 Score=85.77 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=88.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|+|++..+...|+-.+-+.|++||++..-++....+|.+.+.+. ..++|+++.+||.|..... .+.....
T Consensus 65 dtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv--~~NiPiv~cGNKvDi~~r~-----~k~k~v~ 137 (216)
T KOG0096|consen 65 DTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV--RENIPIVLCGNKVDIKARK-----VKAKPVS 137 (216)
T ss_pred ecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHH--hcCCCeeeeccceeccccc-----cccccce
Confidence 79999999999999999999999999999888999999999999765 4679999999999975522 2333445
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+...+.+.++++||+++.+.+.-|-|+.+.+
T Consensus 138 ~~rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 138 FHRKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred eeecccceeEEeecccccccccchHHHhhhh
Confidence 5567888999999999999999999998765
No 177
>PRK15494 era GTPase Era; Provisional
Probab=99.49 E-value=3e-13 Score=89.29 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCCCcc-CchhhH-------HhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQD-KIRPLW-------RHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~-~~~~~~-------~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||+. .+..+. ..++.+||++++|+|.+++ +... ..|+..+.. .+.|.++++||+|+.+. ...
T Consensus 106 DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~-~~~ 178 (339)
T PRK15494 106 DTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRS----LNIVPIFLLNKIDIESK-YLN 178 (339)
T ss_pred ECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc-cHH
Confidence 899984 333222 1347799999999998653 3333 344554432 34677899999998653 233
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+..+..... ....+++++||++|.|++++++++...+.
T Consensus 179 ~~~~~l~~~---~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 179 DIKAFLTEN---HPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred HHHHHHHhc---CCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 333332211 12357899999999999999999988654
No 178
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=4.8e-13 Score=90.80 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=73.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 77 (113)
|||||+-|.+|+..-.+-+|.+|+|+|+++. ++.+. ++... ..+.|+++++||+|+++.. ...+...+
T Consensus 61 DTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEA----I~hak----~a~vP~iVAiNKiDk~~~n-p~~v~~el 131 (509)
T COG0532 61 DTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEA----INHAK----AAGVPIVVAINKIDKPEAN-PDKVKQEL 131 (509)
T ss_pred cCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHH----HHHHH----HCCCCEEEEEecccCCCCC-HHHHHHHH
Confidence 8999999999999999999999999999873 33332 23332 2689999999999998543 33232222
Q ss_pred CCCcc----CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 78 GLTRI----RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 78 ~~~~~----~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....+ -...+.++.+||++|+|+.+++..+...
T Consensus 132 ~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 132 QEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred HHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 21112 1245789999999999999999977643
No 179
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.48 E-value=4.2e-13 Score=84.01 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=69.3
Q ss_pred CCCCccCchhhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~ 74 (113)
||||+++|.+.....+. .+|++++|+|+..... ....+++..+.. .++|+++++||+|+.+..... ++.
T Consensus 90 DtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~~~~~~~~l~ 164 (224)
T cd04165 90 DLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANILQETLKDLK 164 (224)
T ss_pred ECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHHHHHHHHHHH
Confidence 89999999765555554 6899999999876432 333445555533 468999999999985532222 222
Q ss_pred HHhCCCc---------------------cCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 75 EKLGLTR---------------------IRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 75 ~~~~~~~---------------------~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
+.+.... .....+|++.+||.+|.|++++.+.|..
T Consensus 165 ~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 165 RILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2222110 0123458999999999999999887754
No 180
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=9e-13 Score=78.67 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=62.4
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhCCCccCCCCeEEEe
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQP 91 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 91 (113)
.++..+|++++|+|++++.+... ..++..... .+.|+++++||+|+.+. ....++.+............++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQD-LRIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhH-HHHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 35678999999999988755433 234444432 46899999999998664 223333333322111113457999
Q ss_pred ccccCCCCHHHHHHHHHhh
Q psy17510 92 SCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~~~ 110 (113)
+||+++.|+.++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 181
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=6.8e-13 Score=89.55 Aligned_cols=103 Identities=26% Similarity=0.265 Sum_probs=69.5
Q ss_pred CCCCccC----c---hhhHHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDK----I---RPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~----~---~~~~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||.-. . ...+...+.+++++++|+|+++. .++++...|..++... +...++|+++|+||+|+.+...
T Consensus 212 D~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e 291 (424)
T PRK12297 212 DIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE 291 (424)
T ss_pred ECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH
Confidence 7888632 2 22233346679999999999754 4566666666666442 2235789999999999853211
Q ss_pred -HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 -PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+++.+.+. ++++++||++++|++++++++.+.+
T Consensus 292 ~l~~l~~~l~--------~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 292 NLEEFKEKLG--------PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred HHHHHHHHhC--------CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122222222 4688999999999999999988654
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.48 E-value=1.1e-13 Score=96.80 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=71.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCHHH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKPHE----IQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~----~~~ 75 (113)
||||+++|...+..++.++|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+...... +.+
T Consensus 56 DtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~-~~qT~ehl~il~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~ 130 (581)
T TIGR00475 56 DVPGHEKFISNAIAGGGGIDAALLVVDADEGV-MTQTGEHLAVLDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQ 130 (581)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999988888999999999999998732 1222333333321 3577 999999999865322111 111
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+....+ ...++++++||++|.|++++++++...+
T Consensus 131 ~l~~~~~-~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 131 ILNSYIF-LKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred HHHHhCC-CCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 1111101 1257899999999999999998886543
No 183
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.47 E-value=7.2e-13 Score=90.09 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=67.4
Q ss_pred CCCCccCchhhH--------HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPLW--------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~--------~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+...+ ..+++.+|++++|+|.+++.+.+.. |+..+.. .++|+++|+||+|+.+. +..+
T Consensus 257 DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~ 329 (442)
T TIGR00450 257 DTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEF 329 (442)
T ss_pred eCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhh
Confidence 899997665432 3578899999999999987666554 6665532 46899999999998653 2222
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+. .+++++.+||++ .|++++++.+.+.+
T Consensus 330 ~~~~--------~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 330 FVSS--------KVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred hhhh--------cCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 2221 234578999997 68888888777654
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=5e-13 Score=90.78 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=69.7
Q ss_pred CCCCccCchhh-----------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIRPL-----------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~~~-----------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||..+.... ...++..+|++++|+|++++.+..+ ..+...+.+ .++|+++++||+|+.+...
T Consensus 227 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~-~~i~~~~~~----~~~~~ivv~NK~Dl~~~~~ 301 (435)
T PRK00093 227 DTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQD-LRIAGLALE----AGRALVIVVNKWDLVDEKT 301 (435)
T ss_pred ECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCcEEEEEECccCCCHHH
Confidence 89996543322 1246789999999999997655443 234444433 4689999999999864322
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
..++.+............+++++||+++.|++++++.+.+
T Consensus 302 ~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 302 MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 3333333321111124568999999999999999998765
No 185
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.46 E-value=8.1e-13 Score=92.34 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=70.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------------ 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------ 68 (113)
||||++.|..++..++..+|++++|+|+++..... ....+..+.. .++|+++++||+|+.+..
T Consensus 75 DTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~q-t~e~i~~l~~----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~s 149 (590)
T TIGR00491 75 DTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YKTPFVVAANKIDRIPGWRSHEGRPFMESF 149 (590)
T ss_pred ECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHh-HHHHHHHHHH----cCCCEEEEEECCCccchhhhccCchHHHHH
Confidence 89999999999999999999999999998632111 1222222322 468999999999986421
Q ss_pred --CHHHHHH-----------HhCCCcc----------CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 69 --KPHEIQE-----------KLGLTRI----------RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 69 --~~~~~~~-----------~~~~~~~----------~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....+.. .+....+ -...++++++||++|+|++++..++..
T Consensus 150 ak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 150 SKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0111100 1111101 123578999999999999999998753
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.45 E-value=6.2e-13 Score=94.97 Aligned_cols=93 Identities=11% Similarity=0.010 Sum_probs=63.7
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
.++..+|++++|+|+++..+..+. .++..+.. .++|+++++||+|+.+....+.+.+............+++.+|
T Consensus 528 ~~i~~advvilViDat~~~s~~~~-~i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDL-KVMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 357899999999999987666654 34444433 4689999999999975433333332222111111334678999
Q ss_pred ccCCCCHHHHHHHHHhhc
Q psy17510 94 ATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~~ 111 (113)
|++|.|++++++.+.+..
T Consensus 603 Aktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887653
No 187
>KOG1145|consensus
Probab=99.44 E-value=7.3e-13 Score=90.39 Aligned_cols=105 Identities=18% Similarity=0.126 Sum_probs=75.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|||||.-|.+|+..--+.+|.+++|+.+.+. -...+.+-+... ...+.|+++++||+|.+++....-..+.....
T Consensus 207 DTPGHaAF~aMRaRGA~vtDIvVLVVAadDG-VmpQT~EaIkhA----k~A~VpiVvAinKiDkp~a~pekv~~eL~~~g 281 (683)
T KOG1145|consen 207 DTPGHAAFSAMRARGANVTDIVVLVVAADDG-VMPQTLEAIKHA----KSANVPIVVAINKIDKPGANPEKVKRELLSQG 281 (683)
T ss_pred cCCcHHHHHHHHhccCccccEEEEEEEccCC-ccHhHHHHHHHH----HhcCCCEEEEEeccCCCCCCHHHHHHHHHHcC
Confidence 8999999999999999999999999988763 122222223333 33689999999999987644333333322211
Q ss_pred cc---CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RI---RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~---~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. -+.+++++++||++|.|++.+-+.+..+
T Consensus 282 i~~E~~GGdVQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 282 IVVEDLGGDVQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred ccHHHcCCceeEEEeecccCCChHHHHHHHHHH
Confidence 11 2467899999999999999988877644
No 188
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.44 E-value=1.4e-12 Score=88.02 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=68.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~ 76 (113)
||||+++|..........+|++++|+|++++.........+..+... ...|+++++||+|+.+.... +++.+.
T Consensus 91 DtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 91 DAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 89999988776665666789999999998642111222222222211 23478999999998653221 112221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. . ....++++++||+++.|+++++++|...+
T Consensus 168 l~~-~-~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 168 VKG-T-VAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred hcc-c-cCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 111 1 12356899999999999999999998754
No 189
>PRK11058 GTPase HflX; Provisional
Probab=99.44 E-value=3.6e-12 Score=86.33 Aligned_cols=99 Identities=23% Similarity=0.127 Sum_probs=66.3
Q ss_pred CCCCccCc--hhhHH------hhhcCCcEEEEEEECCChhhHHHHH---HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKI--RPLWR------HYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~--~~~~~------~~~~~~~~vi~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||+|..+. ..+++ ..+..||++++|+|++++.+.+... .++..+. ..++|+++|+||+|+.+...
T Consensus 251 DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~----~~~~pvIiV~NKiDL~~~~~ 326 (426)
T PRK11058 251 DTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEID----AHEIPTLLVMNKIDMLDDFE 326 (426)
T ss_pred ecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc----cCCCCEEEEEEcccCCCchh
Confidence 89997432 23333 2468899999999999876666543 3444442 24689999999999864211
Q ss_pred HHHHHHHhCCCccCCCCeE-EEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWY-VQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+.. .. .+.+ ++.+||++|.|++++++++...+
T Consensus 327 -~~~~~-~~------~~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 327 -PRIDR-DE------ENKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred -HHHHH-Hh------cCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 11111 11 1112 47899999999999999998765
No 190
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.43 E-value=1.2e-12 Score=91.71 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=78.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||+..|...+..+++.+|++++|+|+++. .......|+..+.. .++|+++++||+|+.+... ..++.+.+
T Consensus 70 DTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~ 144 (594)
T TIGR01394 70 DTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLF 144 (594)
T ss_pred ECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHH
Confidence 8999999999999999999999999999863 34555667777654 4689999999999865321 12233333
Q ss_pred CCCcc--CCCCeEEEeccccCCC----------CHHHHHHHHHhhcC
Q psy17510 78 GLTRI--RDRNWYVQPSCATTAD----------GLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~--~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~~~ 112 (113)
..... ....++++.+||+++. |+..+++.++..+.
T Consensus 145 ~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 145 AELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 21111 1235689999999995 79999999887653
No 191
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.43 E-value=8.2e-13 Score=82.47 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh------hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CC---H
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD------RIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MK---P 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~---~ 70 (113)
||||+..|...+...+..+|++++|+|+++.. ........+..... ...+|+++++||+|+.+. .+ .
T Consensus 83 DtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 83 DAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART---LGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred ECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH---cCCCeEEEEEEccccccccccHHHH
Confidence 89999888777777788999999999998741 11112222222211 133689999999998742 11 1
Q ss_pred HHHHHH----hCCCccCCCCeEEEeccccCCCCHH
Q psy17510 71 HEIQEK----LGLTRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 71 ~~~~~~----~~~~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
.++.+. +.........++++.+||++|.|+.
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 222222 2211223346889999999999976
No 192
>KOG0077|consensus
Probab=99.42 E-value=5.2e-13 Score=78.61 Aligned_cols=111 Identities=29% Similarity=0.566 Sum_probs=91.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|.+||.--+..|..|+..+|++++.+|+-+.+++.+....+..+.........|+++.+||+|.+.+.+.++..-.++..
T Consensus 70 DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~ 149 (193)
T KOG0077|consen 70 DLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLS 149 (193)
T ss_pred ccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHH
Confidence 77888888899999999999999999999999999998888888776666889999999999999988877776655422
Q ss_pred c------------cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 R------------IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~------------~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+.+.++-||...+.|..+.|.|+...+
T Consensus 150 ~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 150 NFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred HHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 1 112345688999999999889999987654
No 193
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=9.9e-13 Score=90.07 Aligned_cols=106 Identities=25% Similarity=0.266 Sum_probs=67.8
Q ss_pred CCCCccC----c---hhhHHhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHcCc----------CCCCCeEEEEE
Q psy17510 1 DVGGQDK----I---RPLWRHYYTGTQGLIFVVDCADR----DRIDEARQELHRIINDR----------EMRDAIILIFA 59 (113)
Q Consensus 1 D~~G~~~----~---~~~~~~~~~~~~~vi~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~p~ilv~ 59 (113)
||||.-. . ......++.+|+++++|+|+++. +.+++...+..++.... ...++|+++|+
T Consensus 212 DtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVl 291 (500)
T PRK12296 212 DVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVL 291 (500)
T ss_pred ECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEE
Confidence 7888532 1 11223357889999999999752 24444444443332211 23568999999
Q ss_pred eCCCCCCCCCHHHH-HHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 60 NKQDLPDAMKPHEI-QEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 60 nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
||+|+++.....+. ...+ ...+++++++||+++.|+++++.+|.+.+
T Consensus 292 NKiDL~da~el~e~l~~~l-----~~~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 292 NKIDVPDARELAEFVRPEL-----EARGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ECccchhhHHHHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99998653222211 1111 12356899999999999999999988754
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.41 E-value=7.4e-13 Score=92.78 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=66.8
Q ss_pred CCCCccCchhh------HHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPL------WRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~------~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||+.++... .+.|+ ..+|++++|+|.++.+ ....+..++.+ .++|+++++||+|+.+......
T Consensus 47 DtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~ 119 (591)
T TIGR00437 47 DLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRI 119 (591)
T ss_pred ECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChh
Confidence 89999887653 34444 3789999999998632 23344444433 4689999999999854322111
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+.+.. ..+++++++||++++|++++++++.+.
T Consensus 120 d~~~L~~----~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 120 DEEKLEE----RLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred hHHHHHH----HcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 1111111 123578999999999999999998764
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.41 E-value=6e-13 Score=90.27 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=62.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC------HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMK------PHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~ 72 (113)
||||+++|......++..+|++++|+|+++..+.. ....++..... ....|+++++||+|+.+... ..+
T Consensus 91 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~~~~~~~e 167 (426)
T TIGR00483 91 DCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEEFEAIKKE 167 (426)
T ss_pred ECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHHHHHHHHH
Confidence 89999998776666788999999999998763221 11122222211 12358999999999864211 112
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
+.+......+....++++++||+++.|+.+
T Consensus 168 i~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 168 VSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHcCCCcccceEEEeeccccccccc
Confidence 222222112222457899999999999875
No 196
>KOG4423|consensus
Probab=99.40 E-value=5.8e-13 Score=79.81 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=82.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC---cCCCCCeEEEEEeCCCCCCCC-C--HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND---REMRDAIILIFANKQDLPDAM-K--PHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~~~-~--~~~~~ 74 (113)
|++||++|..|.+.|++.+++..+|||.+++.+++....|...+..- +.....|+++..||+|..... + ...+.
T Consensus 81 dIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d 160 (229)
T KOG4423|consen 81 DIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFD 160 (229)
T ss_pred cchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHH
Confidence 78999999999999999999999999999999999999998887432 333467899999999975421 1 12333
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+. ....+++|++.+.++.++-..++..+
T Consensus 161 ~f~keng----f~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 161 NFKKENG----FEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred HHHhccC----ccceeeeccccccChhHHHHHHHHHH
Confidence 3222221 22478999999999999988887654
No 197
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.39 E-value=7.9e-12 Score=78.93 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=76.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||+..|...+..++..+|++++|+|+++... .....+++.+.. .++|+++++||+|+..... ..++.+.+
T Consensus 70 DTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~-~~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~ 144 (237)
T cd04168 70 DTPGHMDFIAEVERSLSVLDGAILVISAVEGVQ-AQTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKL 144 (237)
T ss_pred eCCCccchHHHHHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999987533 234455555533 4789999999999865210 11222222
Q ss_pred CCC------------------------------------------c--------------cCCCCeEEEeccccCCCCHH
Q psy17510 78 GLT------------------------------------------R--------------IRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 78 ~~~------------------------------------------~--------------~~~~~~~~~~~sa~~~~~i~ 101 (113)
+.. . ..+.-+|++-.||.++.|+.
T Consensus 145 ~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~ 224 (237)
T cd04168 145 SSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIE 224 (237)
T ss_pred CCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHH
Confidence 110 0 01234689999999999999
Q ss_pred HHHHHHHhhcC
Q psy17510 102 EGLTWLTSNHK 112 (113)
Q Consensus 102 ~~~~~l~~~~~ 112 (113)
.+++.+++.+.
T Consensus 225 ~ll~~~~~~~p 235 (237)
T cd04168 225 ELLEGITKLFP 235 (237)
T ss_pred HHHHHHHHhcC
Confidence 99999998764
No 198
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.39 E-value=2.1e-12 Score=85.39 Aligned_cols=109 Identities=26% Similarity=0.410 Sum_probs=82.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
|++|+...++.|.+|+.+++++|||+|.++ ...+.++..+++.+...+...++|++++.||.|+...
T Consensus 190 DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~ 269 (342)
T smart00275 190 DVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIK 269 (342)
T ss_pred ecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhC
Confidence 899999999999999999999999999996 3468888889999988877789999999999996321
Q ss_pred --------------CCHHH----HHHHhCCCcc--CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 68 --------------MKPHE----IQEKLGLTRI--RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 68 --------------~~~~~----~~~~~~~~~~--~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+... +.+.+....- .++.+..+.++|.+..++..+|+.+..
T Consensus 270 ~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~ 331 (342)
T smart00275 270 KVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKD 331 (342)
T ss_pred CCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHH
Confidence 01111 2222221111 234577889999999999988876654
No 199
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=4.5e-12 Score=85.00 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=71.1
Q ss_pred CCCCccCc-------hhhHHhhhcCCcEEEEEEECC---ChhhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKI-------RPLWRHYYTGTQGLIFVVDCA---DRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~-------~~~~~~~~~~~~~vi~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||.-+- ......++.+++++++|+|++ .....+....|++++... +...++|+++|+||+|+.+...
T Consensus 213 DtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e 292 (390)
T PRK12298 213 DIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE 292 (390)
T ss_pred eCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH
Confidence 78996431 222234688999999999988 344566666666666442 1224689999999999865322
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+.+... . ....+++.+||+++.|++++++++...+
T Consensus 293 l~~~l~~l~~~-~-~~~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 293 AEERAKAIVEA-L-GWEGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred HHHHHHHHHHH-h-CCCCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 22222221111 0 1112578999999999999999998765
No 200
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.39 E-value=1.9e-12 Score=91.00 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=69.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCHHH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKPHE----IQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~----~~~ 75 (113)
||||+++|...+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+...... +.+
T Consensus 57 DtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~-~~qT~ehl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~ 131 (614)
T PRK10512 57 DVPGHEKFLSNMLAGVGGIDHALLVVACDDGV-MAQTREHLAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKA 131 (614)
T ss_pred ECCCHHHHHHHHHHHhhcCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHH
Confidence 89999999777777889999999999998632 2223333333322 2455 579999999865322222 222
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+.... ....+++++||++|.|++++++.|...
T Consensus 132 ~l~~~~--~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 132 VLREYG--FAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred HHHhcC--CCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 221111 124679999999999999999998754
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.38 E-value=5.2e-12 Score=88.62 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||+..|...+..+++.+|++++|+|+++.. ......++..+.. .++|.++++||+|+.+... ..++...+
T Consensus 74 DTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~ 148 (607)
T PRK10218 74 DTPGHADFGGEVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLF 148 (607)
T ss_pred ECCCcchhHHHHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHH
Confidence 89999999999999999999999999998642 2233444555433 4789999999999875432 22333333
Q ss_pred CC-Ccc-CCCCeEEEeccccCCC----------CHHHHHHHHHhhcC
Q psy17510 78 GL-TRI-RDRNWYVQPSCATTAD----------GLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~-~~~-~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~~~ 112 (113)
.. ... ....+|++.+||++|. |+..+++.++..+.
T Consensus 149 ~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 149 VNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred hccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 21 111 1245789999999998 57888888877653
No 202
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=4.3e-12 Score=86.24 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=64.3
Q ss_pred CCCCccC--------chhhHHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH
Q psy17510 1 DVGGQDK--------IRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMKP 70 (113)
Q Consensus 1 D~~G~~~--------~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 70 (113)
||||++. +......++..+|++++|+|++++.+.. ....|+.. .++|+++++||+|+.+. .
T Consensus 55 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~--~ 125 (435)
T PRK00093 55 DTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDE--E 125 (435)
T ss_pred ECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccc--h
Confidence 8999987 3344556789999999999998753322 22333332 36899999999997541 1
Q ss_pred HHHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHh
Q psy17510 71 HEIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....+.... ++ .++++||+++.|+.++++++..
T Consensus 126 ~~~~~~~~l------g~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 ADAYEFYSL------GLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred hhHHHHHhc------CCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 122222111 11 2679999999999999999876
No 203
>PRK00089 era GTPase Era; Reviewed
Probab=99.38 E-value=3.6e-12 Score=82.63 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=67.2
Q ss_pred CCCCccCch--------hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHH
Q psy17510 1 DVGGQDKIR--------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPH 71 (113)
Q Consensus 1 D~~G~~~~~--------~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~ 71 (113)
||||..... ......+..+|++++|+|+++.. .....++...... .+.|+++++||+|+... ....
T Consensus 59 DTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~ 133 (292)
T PRK00089 59 DTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELL 133 (292)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHH
Confidence 899975432 23344678999999999998732 2222333333221 46899999999998632 2222
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+.+... ....+++.+||+++.|++++++++...+
T Consensus 134 ~~~~~l~~~---~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 134 PLLEELSEL---MDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred HHHHHHHhh---CCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 222222211 1245789999999999999999998765
No 204
>KOG0462|consensus
Probab=99.38 E-value=5.6e-12 Score=86.10 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=76.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
|||||-.|+.-..+.+.-|+++|+|+|++...--+-...++..+ + .+..++.|+||+|++.+... .++.+.|
T Consensus 131 DTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF 205 (650)
T KOG0462|consen 131 DTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADPERVENQLFELF 205 (650)
T ss_pred cCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999999999998642222223333333 2 57889999999999875432 2333444
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
... .-+++.+||++|.|+.++++.+++.+.
T Consensus 206 ~~~-----~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 206 DIP-----PAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred cCC-----ccceEEEEeccCccHHHHHHHHHhhCC
Confidence 432 226899999999999999999998653
No 205
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.38 E-value=2.5e-12 Score=84.27 Aligned_cols=110 Identities=28% Similarity=0.437 Sum_probs=83.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR----------DRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
|++||+..++.|.+|+.++++++||+|.++. ..+.++...++.+...+...++|+++++||.|+...
T Consensus 167 DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~ 246 (317)
T cd00066 167 DVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIK 246 (317)
T ss_pred CCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhc
Confidence 8999999999999999999999999999863 568888889999988877789999999999995221
Q ss_pred ---------------CCHHH----HHHHhCCC-ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 68 ---------------MKPHE----IQEKLGLT-RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 68 ---------------~~~~~----~~~~~~~~-~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+..+ +.+++... ...++.+..+.++|.+..++..+|+.+...
T Consensus 247 ~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~ 309 (317)
T cd00066 247 KSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDI 309 (317)
T ss_pred CCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHH
Confidence 11111 12222110 012356778899999999999988876543
No 206
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.38 E-value=6.6e-12 Score=87.96 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=68.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----------- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----------- 69 (113)
||||++.|..++..++..+|++++|+|+++... ......+..+.. .++|+++++||+|+.+...
T Consensus 77 DTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~-~qt~e~i~~~~~----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 77 DTPGHEAFTNLRKRGGALADIAILVVDINEGFQ-PQTIEAINILKR----RKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred ECCChHHHHHHHHHhHhhCCEEEEEEECCCCCC-HhHHHHHHHHHH----cCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 899999999999989999999999999986211 112222333322 4689999999999853111
Q ss_pred ---HHHHH-----------HHhCCCccC----------CCCeEEEeccccCCCCHHHHHHHHH
Q psy17510 70 ---PHEIQ-----------EKLGLTRIR----------DRNWYVQPSCATTADGLYEGLTWLT 108 (113)
Q Consensus 70 ---~~~~~-----------~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~ 108 (113)
...+. ..+....+. ...++++++||++|.|+.++++.+.
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 01111 111111110 1357899999999999999888765
No 207
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=7.9e-12 Score=89.43 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=65.9
Q ss_pred CCCCccC--------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDK--------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~--------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||.+. +......++..+|++++|+|.++..... ...|...+.. .++|+++|+||+|+.... ..
T Consensus 329 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~--~~ 401 (712)
T PRK09518 329 DTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTST-DERIVRMLRR----AGKPVVLAVNKIDDQASE--YD 401 (712)
T ss_pred eCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh----cCCCEEEEEECcccccch--hh
Confidence 8999764 3345566889999999999997642211 1234444432 578999999999985421 11
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..... .. ..+++||++|.|+.+++++++..+
T Consensus 402 ~~~~~~lg----~~-~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 402 AAEFWKLG----LG-EPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred HHHHHHcC----CC-CeEEEECCCCCCchHHHHHHHHhc
Confidence 12211111 11 246899999999999999998765
No 208
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.37 E-value=6e-12 Score=85.37 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=66.4
Q ss_pred CCCCc--------cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQ--------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~--------~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||. +.+..+...+++.+|++++|+|..+..+..+ ..+...+.+ .++|+++++||+|+.+....
T Consensus 53 DTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~~~piilVvNK~D~~~~~~~-- 125 (429)
T TIGR03594 53 DTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRK----SGKPVILVANKIDGKKEDAV-- 125 (429)
T ss_pred ECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH----hCCCEEEEEECccCCccccc--
Confidence 89996 3445556678899999999999986433322 122222222 36899999999998653221
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+.... ...+++++||.++.|+.++++++...+
T Consensus 126 ~~~~~~l-----g~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 126 AAEFYSL-----GFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred HHHHHhc-----CCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 1111111 111478999999999999999988765
No 209
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.36 E-value=1.2e-11 Score=90.70 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=69.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----------- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----------- 69 (113)
|||||+.|..++...+..+|++++|+|+++.-. ......+..+.. .++|+++++||+|+.+...
T Consensus 532 DTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~-~qT~e~I~~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~ 606 (1049)
T PRK14845 532 DTPGHEAFTSLRKRGGSLADLAVLVVDINEGFK-PQTIEAINILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLLNF 606 (1049)
T ss_pred ECCCcHHHHHHHHhhcccCCEEEEEEECcccCC-HhHHHHHHHHHH----cCCCEEEEEECCCCccccccccchhhhhhh
Confidence 899999999998888899999999999986311 112223333322 3689999999999853211
Q ss_pred -------HHHHHH-------HhCCCcc----------CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 70 -------PHEIQE-------KLGLTRI----------RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 70 -------~~~~~~-------~~~~~~~----------~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+++.. .+....+ -...++++++||++|.|++++..++..
T Consensus 607 ~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 607 NEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 011110 0111100 024578999999999999999988753
No 210
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.35 E-value=7.4e-12 Score=85.40 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=70.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||++.|-+.+......+|++++|+|+..........+.+..+... .-.|+++++||+|+.+..... ++.+.
T Consensus 123 DtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l---gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~ 199 (460)
T PTZ00327 123 DCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLVKEAQAQDQYEEIRNF 199 (460)
T ss_pred eCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc---CCCcEEEEEecccccCHHHHHHHHHHHHHH
Confidence 89999999777667788999999999998632122223333322111 234789999999986522211 22221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. . ....++++.+||++|.|++.+++.|...+
T Consensus 200 l~~-~-~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 200 VKG-T-IADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHh-h-ccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 111 1 12467899999999999999999988544
No 211
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.35 E-value=4.7e-12 Score=85.93 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=61.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC------HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI-DEARQELHRIINDREMRDAIILIFANKQDLPDAMK------PHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~ 73 (113)
||||+++|.......+..+|++++|+|++++... .....++...... ...|+++++||+|+.+... .+++
T Consensus 90 DtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~~~i 166 (425)
T PRK12317 90 DCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL---GINQLIVAINKMDAVNYDEKRYEEVKEEV 166 (425)
T ss_pred ECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc---CCCeEEEEEEccccccccHHHHHHHHHHH
Confidence 8999998876555667899999999999862111 1122233322211 2247999999999865211 1122
Q ss_pred HHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 74 QEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
.+.+....+....++++++||++|.|+.+
T Consensus 167 ~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 167 SKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 22222112222346899999999999986
No 212
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.34 E-value=5e-12 Score=77.32 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=65.5
Q ss_pred CCCCc----------cCchhhHHhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQ----------DKIRPLWRHYYTGT---QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~----------~~~~~~~~~~~~~~---~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||. +++..+...++..+ +++++++|.+.+.+... ..+...+ .. .++|+++++||+|+.+.
T Consensus 76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l-~~---~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 76 DLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWL-KE---YGIPVLIVLTKADKLKK 150 (196)
T ss_pred CCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHH-HH---cCCcEEEEEECcccCCH
Confidence 88994 45555666666655 67888898876533222 1112222 21 46899999999998653
Q ss_pred CCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 68 MKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...+...+... ..+.....+++++||+++.|++++++.+...++
T Consensus 151 ~~~~~~~~~i~-~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 151 GERKKQLKKVR-KALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHH-HHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 22222221111 111111456889999999999999999987653
No 213
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.34 E-value=8.1e-12 Score=74.13 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=62.6
Q ss_pred chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCe
Q psy17510 8 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 87 (113)
Q Consensus 8 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 87 (113)
++.++++..+++|++++|+|++++....+ ..+...+ .. .++|+++++||+|+.+........ .+. ...+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~-~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV-LE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH-Hh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCC
Confidence 56788899999999999999986532221 1222222 21 468999999999985421111111 111 11234
Q ss_pred EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 88 YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 88 ~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+++.+||+++.|++++++.+.+.+
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHH
Confidence 688999999999999999987653
No 214
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.33 E-value=8.9e-12 Score=73.75 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=66.9
Q ss_pred CCCCccCchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC-CCCHH
Q psy17510 1 DVGGQDKIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD-AMKPH 71 (113)
Q Consensus 1 D~~G~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~ 71 (113)
||||...... ....++..+|++++|+|++++. .....++...... .+.|+++++||+|+.. .....
T Consensus 57 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~ 131 (168)
T cd04163 57 DTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLL 131 (168)
T ss_pred ECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHH
Confidence 7899754432 3455688999999999998762 2222233222221 3589999999999863 22223
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+....+... ....+++.+|++++.|+++++++|.+.
T Consensus 132 ~~~~~~~~~---~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 132 PLLEKLKEL---GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHHHHhc---cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 333332211 123578999999999999999999765
No 215
>KOG0090|consensus
Probab=99.32 E-value=4.1e-11 Score=73.39 Aligned_cols=110 Identities=24% Similarity=0.400 Sum_probs=75.0
Q ss_pred CCCCccCchhhHHhhhc---CCcEEEEEEECCC-hhhHHHHHHHHHHHHcCc--CCCCCeEEEEEeCCCCCCCCCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYT---GTQGLIFVVDCAD-RDRIDEARQELHRIINDR--EMRDAIILIFANKQDLPDAMKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~---~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~D~~~~~~~~~~~ 74 (113)
|.|||.|.+.....|++ .+-+++||+|..- +....+..+++..+.... ...+.|+++++||.|+..+.+.+-+.
T Consensus 88 D~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090|consen 88 DLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred eCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHH
Confidence 89999999987777777 7999999999874 334555555555554433 23567999999999986654432221
Q ss_pred HHh-----------C------------------------CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKL-----------G------------------------LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~-----------~------------------------~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+ + ...+....+.+.++|++++ +++++.+|+.+.+
T Consensus 168 ~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 168 QQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 100 0 0011124567899999888 8999999998753
No 216
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=2.2e-11 Score=82.22 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=76.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
|||||=.|.--..+.+..|.+.++|+|++..-.-+-..+.+..+ ..+..++.|+||+|++.+.. .+++...+
T Consensus 82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-----e~~LeIiPViNKIDLP~Adpervk~eIe~~i 156 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPAADPERVKQEIEDII 156 (603)
T ss_pred CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-----HcCcEEEEeeecccCCCCCHHHHHHHHHHHh
Confidence 89999988877777889999999999998652222223333333 25789999999999987543 34555555
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
++... ..+.+||++|.|++++++.++..+.
T Consensus 157 Gid~~-----dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 157 GIDAS-----DAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred CCCcc-----hheeEecccCCCHHHHHHHHHhhCC
Confidence 65433 3669999999999999999998763
No 217
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.31 E-value=3.4e-11 Score=74.05 Aligned_cols=95 Identities=22% Similarity=0.171 Sum_probs=62.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCH-H----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-H----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-~----~~~ 74 (113)
||||+..|.......+..+|++++|+|+..... ....+++..+.. .++| +++++||+|+...... + ++.
T Consensus 71 DtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~ 145 (195)
T cd01884 71 DCPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVR 145 (195)
T ss_pred ECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHH
Confidence 899999888777778899999999999976422 223344444433 3566 7799999998532211 1 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCH
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGL 100 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i 100 (113)
+.+....++...++++.+||++|.++
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCC
Confidence 22222222334678999999998874
No 218
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.28 E-value=1.2e-11 Score=75.64 Aligned_cols=97 Identities=19% Similarity=0.044 Sum_probs=61.9
Q ss_pred chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHh---CCCccC
Q psy17510 8 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKL---GLTRIR 83 (113)
Q Consensus 8 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~---~~~~~~ 83 (113)
++.++..++.++|++++|+|++++... |...+... ..++|+++|+||+|+.+... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 467888899999999999999875311 11112111 24689999999999864322 22121111 000000
Q ss_pred CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 84 DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 84 ~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+++.+||+++.|++++++++...+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 0112478999999999999999998754
No 219
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.28 E-value=2.4e-11 Score=75.38 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|...+...+..+|++++|+|+++... .........+... ...++++++||+|+.+... ...+.....
T Consensus 83 DTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 83 DTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL---GIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred ECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc---CCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 899999987767778899999999999986532 1222222222211 2245788999999864211 111111111
Q ss_pred --CCccCCCCeEEEeccccCCCCHHH
Q psy17510 79 --LTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 79 --~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
...+....++++.+||+++.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 001111235689999999999864
No 220
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.27 E-value=5.3e-12 Score=71.53 Aligned_cols=61 Identities=23% Similarity=0.418 Sum_probs=49.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH---HHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
|++|++.+...+...+..+|++++|||.+++.+++... .|+..+... ..++|+++++||.|
T Consensus 56 d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 56 DFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred ecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 67888888888777899999999999999998888874 456666432 25699999999998
No 221
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.25 E-value=1.4e-11 Score=74.68 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=57.4
Q ss_pred CCCCc----------cCchhhHHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQ----------DKIRPLWRHYYTG---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~----------~~~~~~~~~~~~~---~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||. +.+..+...|+.. ++++++|+|.+++-+.... .++..+.. .++|+++++||+|+.+.
T Consensus 70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~----~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE----RGIPVLIVLTKADKLKK 144 (179)
T ss_pred eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCCH
Confidence 78994 2344444556654 5899999999865333322 33333322 46899999999998653
Q ss_pred CC----HHHHHHHhCCCccCCCCeEEEeccccCCCCHH
Q psy17510 68 MK----PHEIQEKLGLTRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 68 ~~----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
.. ..++.+.+... ...++++++||++++|++
T Consensus 145 ~~~~~~~~~i~~~l~~~---~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 145 SELNKQLKKIKKALKKD---ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHHHHHHHhhc---cCCCceEEEECCCCCCCC
Confidence 22 22233333321 223579999999999973
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.25 E-value=6.6e-11 Score=79.68 Aligned_cols=106 Identities=20% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCHH-----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKPH-----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~-----~~~ 74 (113)
||||+++|..........+|++++|+|+.... .....+++..+.. .++| +++++||+|+.+..... ++.
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~ 155 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVR 155 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHH
Confidence 89999988776666778899999999997632 2223444444433 3677 67899999986432211 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC--------CHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD--------GLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~--------~i~~~~~~l~~~~ 111 (113)
+.+....+....++++.+||+++. ++..+++.+.+.+
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 222211222234689999999983 5778888776544
No 223
>PRK12289 GTPase RsgA; Reviewed
Probab=99.25 E-value=4.5e-11 Score=79.24 Aligned_cols=93 Identities=18% Similarity=0.140 Sum_probs=65.0
Q ss_pred hhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCe
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 87 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 87 (113)
..+.+..++++|.+++|+|+.++. .......|+..+.. .++|+++|+||+|+.+........+.+ ...++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~ 150 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGY 150 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCC
Confidence 345566789999999999998764 34444666665522 579999999999986422122222222 12345
Q ss_pred EEEeccccCCCCHHHHHHHHHhh
Q psy17510 88 YVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 88 ~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+++.+||+++.|++++++.+...
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhhccc
Confidence 68999999999999999988653
No 224
>COG1159 Era GTPase [General function prediction only]
Probab=99.24 E-value=8e-11 Score=75.39 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=68.7
Q ss_pred CCCCccCchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HH
Q psy17510 1 DVGGQDKIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PH 71 (113)
Q Consensus 1 D~~G~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~ 71 (113)
||||.-+-+. .....++.+|+++||+|.+.+... ..+++-+..+. .+.|+++++||+|..+... ..
T Consensus 60 DTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~ 134 (298)
T COG1159 60 DTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLL 134 (298)
T ss_pred eCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHH
Confidence 8999543332 234467889999999999874322 23333333332 4679999999999866444 23
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+.+.+... .....++++||++|.|++.+.+.+..++.
T Consensus 135 ~~~~~~~~~---~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 135 KLIAFLKKL---LPFKEIVPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred HHHHHHHhh---CCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence 333332211 12236999999999999999998887764
No 225
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.22 E-value=2.8e-11 Score=73.22 Aligned_cols=73 Identities=34% Similarity=0.572 Sum_probs=48.3
Q ss_pred CCCCccCchhhH-Hh--hhcCCcEEEEEEECCC-hhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDKIRPLW-RH--YYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~~-~~--~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
|+|||++.+... .. +...+.+||||+|.+. +....+..+++..++.... ....|+++++||+|+..+.+...+
T Consensus 55 D~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~I 133 (181)
T PF09439_consen 55 DIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKI 133 (181)
T ss_dssp EETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHH
T ss_pred ECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHH
Confidence 899999998744 43 5889999999999974 4456666666655544322 357899999999999876554433
No 226
>PRK09866 hypothetical protein; Provisional
Probab=99.21 E-value=3.5e-10 Score=79.35 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=67.8
Q ss_pred CCCCccC-----chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHH
Q psy17510 1 DVGGQDK-----IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEI 73 (113)
Q Consensus 1 D~~G~~~-----~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~ 73 (113)
||||-.. +...+...+..+|+|+||+|+....+..+ ....+.+.+. ..+.|+++|+||+|+.+... ...+
T Consensus 236 DTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~--~K~~PVILVVNKIDl~dreeddkE~L 312 (741)
T PRK09866 236 DTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV--GQSVPLYVLVNKFDQQDRNSDDADQV 312 (741)
T ss_pred ECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc--CCCCCEEEEEEcccCCCcccchHHHH
Confidence 8999743 23344558999999999999986433332 2233334321 12259999999999854221 2333
Q ss_pred HHHhCCC--ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLT--RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~--~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+..... ......-.++.+||++|.|++.+++.+...-
T Consensus 313 le~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 313 RALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred HHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 3322101 0111234699999999999999999988643
No 227
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.21 E-value=5.3e-11 Score=70.55 Aligned_cols=92 Identities=22% Similarity=0.329 Sum_probs=61.3
Q ss_pred CCCCccCch------hhHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----C
Q psy17510 1 DVGGQDKIR------PLWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----M 68 (113)
Q Consensus 1 D~~G~~~~~------~~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~ 68 (113)
|+||.-.+. .....|+ ...|++++|+|+++ ++....+..++.+ .++|++++.||+|.... .
T Consensus 53 DlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~i 125 (156)
T PF02421_consen 53 DLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEI 125 (156)
T ss_dssp E----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE
T ss_pred ECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEE
Confidence 788843332 2334454 58999999999986 4444556666654 47999999999996432 2
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHH
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 107 (113)
+.+.+.+.++ +|++.+||+++.|++++++.+
T Consensus 126 d~~~Ls~~Lg--------~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 126 DAEKLSERLG--------VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -HHHHHHHHT--------S-EEEEBTTTTBTHHHHHHHH
T ss_pred CHHHHHHHhC--------CCEEEEEeCCCcCHHHHHhhC
Confidence 3445555554 468899999999999998864
No 228
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.19 E-value=7.7e-10 Score=71.08 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=47.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+.+|......++..+|++++|+|+++... .....+++.... .++|+++++||+|+...
T Consensus 77 DTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~----~~~P~iivvNK~D~~~a 138 (267)
T cd04169 77 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL----RGIPIITFINKLDREGR 138 (267)
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh----cCCCEEEEEECCccCCC
Confidence 899999998877778999999999999986422 222344444422 47899999999998654
No 229
>PRK13768 GTPase; Provisional
Probab=99.19 E-value=7e-11 Score=75.32 Aligned_cols=110 Identities=19% Similarity=0.135 Sum_probs=66.8
Q ss_pred CCCCccCc---hhhHHhh---hcC--CcEEEEEEECCChhhHHHH-H-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH
Q psy17510 1 DVGGQDKI---RPLWRHY---YTG--TQGLIFVVDCADRDRIDEA-R-QELHRIINDREMRDAIILIFANKQDLPDAMKP 70 (113)
Q Consensus 1 D~~G~~~~---~~~~~~~---~~~--~~~vi~v~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 70 (113)
||||+.++ +..+..+ +.+ ++++++|+|.+...+..+. . .|+....+. ..++|+++++||+|+.+....
T Consensus 103 d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~~~~~~ 180 (253)
T PRK13768 103 DTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLLSEEEL 180 (253)
T ss_pred eCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhcCchhH
Confidence 89998664 3344333 333 8999999999754322222 2 222222111 147899999999998764333
Q ss_pred HHHHHHhCC-----------------------CccC--CCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 71 HEIQEKLGL-----------------------TRIR--DRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 71 ~~~~~~~~~-----------------------~~~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+...+.+.. ..+. ....+++.+|++++.|++++.+++.+.+.
T Consensus 181 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 181 ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 333222221 0000 12357899999999999999999987653
No 230
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.19 E-value=2.4e-10 Score=67.80 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=58.9
Q ss_pred chhhHHhhhcC---CcEEEEEEECCChhh--HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCcc
Q psy17510 8 IRPLWRHYYTG---TQGLIFVVDCADRDR--IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI 82 (113)
Q Consensus 8 ~~~~~~~~~~~---~~~vi~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 82 (113)
+...+..|+.. .+++++++|...... ......|+.. .+.|+++++||+|+.+................
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~ 140 (170)
T cd01876 68 WGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELK 140 (170)
T ss_pred HHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHH
Confidence 45555556654 468889998875422 2222333332 24799999999998543222222111110000
Q ss_pred -CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 83 -RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 83 -~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++||+++.|+.++++++.+.+
T Consensus 141 ~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 141 LFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred hccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 12345688999999999999999998753
No 231
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.19 E-value=5.5e-10 Score=77.61 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=48.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|......++..+|++++|+|+++... .....++..... .++|+++++||+|+...
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~----~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL----RDTPIFTFINKLDRDGR 146 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh----cCCCEEEEEECCccccc
Confidence 899999999877788999999999999986422 223455554432 57999999999998653
No 232
>PRK12735 elongation factor Tu; Reviewed
Probab=99.17 E-value=3.6e-10 Score=76.20 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCCCCCCH-H----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDAMKP-H----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~-~----~~~ 74 (113)
||||+++|..........+|++++|+|+.... .....+++..+.. .++|.+ +++||+|+.+.... + ++.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~ 155 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence 89999988776667788999999999998632 2223344444432 467865 57999998642211 1 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC----------CHHHHHHHHHhh
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD----------GLYEGLTWLTSN 110 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~ 110 (113)
+.+....+....++++++||+++. ++..+++.+...
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 222211112235789999999984 677788777654
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.17 E-value=5.8e-10 Score=71.72 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=47.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|...+..++..+|++++|+|+.+... .....++..+.. .++|+++++||+|+.+
T Consensus 70 DTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 70 DTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred ECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 899999999889999999999999999986432 222344444433 4689999999999864
No 234
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.16 E-value=3e-10 Score=76.37 Aligned_cols=104 Identities=17% Similarity=0.080 Sum_probs=69.3
Q ss_pred CCCCccCchhhH-----------HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--
Q psy17510 1 DVGGQDKIRPLW-----------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-- 67 (113)
Q Consensus 1 D~~G~~~~~~~~-----------~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-- 67 (113)
||+|.++-.+.. ...+..++.+++|+|++.+-+..+ ......+.. .+.++++++||||+.+.
T Consensus 232 DTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~----~g~~~vIvvNKWDl~~~~~ 306 (444)
T COG1160 232 DTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEE----AGRGIVIVVNKWDLVEEDE 306 (444)
T ss_pred ECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH----cCCCeEEEEEccccCCchh
Confidence 677765544332 246778999999999987633332 344444433 57899999999998764
Q ss_pred CCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 68 MKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....++.+.+...+..-...+++.+||+++.|+..+++.+..
T Consensus 307 ~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 307 ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHH
Confidence 233344333332111123457999999999999999998764
No 235
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.16 E-value=1.4e-10 Score=79.20 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=63.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhH-------HHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCC-CCC--
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI-------DEARQELHRIINDREMRDA-IILIFANKQDLPD-AMK-- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~-~~~-- 69 (113)
|||||+.|...+...+..+|++|+|+|+++. .+ ..+.+.+..+.. .++ ++++++||+|+.+ ..+
T Consensus 91 DtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~~~~~~~ 165 (447)
T PLN00043 91 DAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATTPKYSKA 165 (447)
T ss_pred ECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCchhhhHH
Confidence 8999999998888899999999999999862 22 233343333322 456 5788999999752 111
Q ss_pred -----HHHHHHHhCCCccCCCCeEEEeccccCCCCHH
Q psy17510 70 -----PHEIQEKLGLTRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 70 -----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
.+++...+....+....++++++||++|.|+.
T Consensus 166 ~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 166 RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 12222222222222335789999999999974
No 236
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.15 E-value=1.8e-10 Score=74.63 Aligned_cols=86 Identities=21% Similarity=0.115 Sum_probs=62.6
Q ss_pred hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 15 YYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
.++++|.+++|+|+.++. ++.....|+..+.. .++|+++++||+|+.+.. +..... ......+.+++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~---~~~~~~g~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELEL---VEALALGYPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHH---HHHHhCCCeEEEEE
Confidence 378999999999998876 67777778776643 468999999999986531 111110 01112346789999
Q ss_pred ccCCCCHHHHHHHHHh
Q psy17510 94 ATTADGLYEGLTWLTS 109 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~ 109 (113)
|+++.|+++++..+..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999999987754
No 237
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.14 E-value=2.5e-10 Score=76.97 Aligned_cols=93 Identities=19% Similarity=0.152 Sum_probs=58.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCCCCCCHH-----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDAMKPH-----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~-----~~~ 74 (113)
||||+++|..........+|++++|+|+..... ....+++..+.. .++|.+ +++||+|+.+..... ++.
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 899999987766667788999999999986322 223344444433 356655 689999986532111 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
+.+....+....++++++||+++.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 222211122234789999999874
No 238
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.13 E-value=3e-10 Score=81.79 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=66.0
Q ss_pred CCCCccCchhh----------HHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQDKIRPL----------WRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~~~~~~~----------~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+..+... .+.++ ..+|++++|+|.++.++ ...+..++.+ .++|+++++||+|+.+..
T Consensus 56 DtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~ 128 (772)
T PRK09554 56 DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQ 128 (772)
T ss_pred ECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhcc
Confidence 89998776431 22343 47999999999987432 2345555543 479999999999986432
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
......+.+. ...+++++++||+++.|++++.+.+...
T Consensus 129 ~i~id~~~L~----~~LG~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 129 NIRIDIDALS----ARLGCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred CcHHHHHHHH----HHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 2221112111 1134578899999999999999988654
No 239
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.13 E-value=4e-10 Score=75.80 Aligned_cols=99 Identities=21% Similarity=0.147 Sum_probs=64.7
Q ss_pred CCCCccCch---------hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQDKIR---------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~~~~---------~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||+|.+... .+....+..||++|||+|....-+- ..+.+..++.. .++|+++|+||+|.... ..
T Consensus 57 DTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~--~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~ 129 (444)
T COG1160 57 DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITP--ADEEIAKILRR---SKKPVILVVNKIDNLKA--EE 129 (444)
T ss_pred ECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEEcccCchh--hh
Confidence 788876332 2334578899999999999763222 22223333221 56999999999997531 11
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+.+++-+ -+.+.+||..|.|+.++.+++...+
T Consensus 130 ~~~efyslG~-----g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 130 LAYEFYSLGF-----GEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred hHHHHHhcCC-----CCceEeehhhccCHHHHHHHHHhhc
Confidence 2222222211 1367999999999999999998765
No 240
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.13 E-value=2.3e-10 Score=66.71 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=60.2
Q ss_pred CCCCcc----CchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC-CCCCHHHHH
Q psy17510 1 DVGGQD----KIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLP-DAMKPHEIQ 74 (113)
Q Consensus 1 D~~G~~----~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~ 74 (113)
||||-- +|.+-.-..-.+||.|++|.|++++. .+.. -+... -++|++-|+||+|+. +..+.+...
T Consensus 42 DTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~ 112 (143)
T PF10662_consen 42 DTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP---GFASM------FNKPVIGVITKIDLPSDDANIERAK 112 (143)
T ss_pred ECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcc------cCCCEEEEEECccCccchhhHHHHH
Confidence 678842 22222233556899999999999753 2221 11122 358999999999997 323333333
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHH
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 108 (113)
+.+...... ++|++|+.++.|++++.++|.
T Consensus 113 ~~L~~aG~~----~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 113 KWLKNAGVK----EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHcCCC----CeEEEECCCCcCHHHHHHHHh
Confidence 333322221 368999999999999999874
No 241
>PRK00098 GTPase RsgA; Reviewed
Probab=99.12 E-value=1.7e-10 Score=75.15 Aligned_cols=85 Identities=24% Similarity=0.173 Sum_probs=58.6
Q ss_pred cCCcEEEEEEECCChhhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 17 TGTQGLIFVVDCADRDRI-DEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
.++|.+++|+|+.++... .....|+..+.. .++|+++++||+|+.+. ......... .+...+++++.+||+
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~~--~~~~~g~~v~~vSA~ 150 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDD--LEEARELLA--LYRAIGYDVLELSAK 150 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCC--HHHHHHHHH--HHHHCCCeEEEEeCC
Confidence 899999999999876543 334567666533 57899999999998532 111111111 111234578999999
Q ss_pred CCCCHHHHHHHHHh
Q psy17510 96 TADGLYEGLTWLTS 109 (113)
Q Consensus 96 ~~~~i~~~~~~l~~ 109 (113)
++.|++++++.+..
T Consensus 151 ~g~gi~~L~~~l~g 164 (298)
T PRK00098 151 EGEGLDELKPLLAG 164 (298)
T ss_pred CCccHHHHHhhccC
Confidence 99999999988753
No 242
>PRK13351 elongation factor G; Reviewed
Probab=99.12 E-value=9.2e-10 Score=78.76 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=49.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|...+..++..+|++++|+|+++...... ...+..+.. .++|+++++||+|+...
T Consensus 79 DtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 79 DTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQT-ETVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 899999999999999999999999999987654443 233344432 46899999999998753
No 243
>KOG1489|consensus
Probab=99.12 E-value=1.1e-09 Score=70.92 Aligned_cols=92 Identities=28% Similarity=0.365 Sum_probs=62.7
Q ss_pred HHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHc-CcCCCCCeEEEEEeCCCCCCCCCH--HHHHHHhCCCccCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIIN-DREMRDAIILIFANKQDLPDAMKP--HEIQEKLGLTRIRDR 85 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~ 85 (113)
....+.+|+.++||+|++.. ..++....+..++-. .....+.|.++|+||+|+++.... .++.+.+..
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~------ 341 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN------ 341 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC------
Confidence 34467899999999999976 555655444444422 223467899999999998643221 333333221
Q ss_pred CeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 86 NWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 86 ~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..++++||++++|+.++...|...
T Consensus 342 -~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 -PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred -CcEEEeeeccccchHHHHHHHhhc
Confidence 148899999999999999877653
No 244
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.12 E-value=2.6e-10 Score=77.88 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=64.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh------HHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCC-CC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR------IDEARQELHRIINDREMRDAI-ILIFANKQDLPDA-MK--- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~-~~--- 69 (113)
|||||++|...+......+|++++|+|++...- -..+.+.+..+.. .++| +++++||+|.... .+
T Consensus 91 DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~~~~~~~ 166 (446)
T PTZ00141 91 DAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTVNYSQER 166 (446)
T ss_pred ECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccchhhHHH
Confidence 899999998888888899999999999985320 0233344444422 4666 6799999995321 11
Q ss_pred H----HHHHHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 70 P----HEIQEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 70 ~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
. +++...+....+....++++.+|+.+|.|+.+
T Consensus 167 ~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 167 YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 22333333222233468899999999999853
No 245
>KOG0082|consensus
Probab=99.11 E-value=2.6e-10 Score=75.07 Aligned_cols=110 Identities=28% Similarity=0.498 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
|+|||+.-++.|-+++.++++||||++.++ ..++.++..+++.+..++...+.++++..||.|+-..
T Consensus 201 DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~ 280 (354)
T KOG0082|consen 201 DVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIK 280 (354)
T ss_pred eCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhc
Confidence 899999999999999999999999999884 2356777889999999988899999999999997331
Q ss_pred -------------C-CHHH----HHHHhCC-CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 68 -------------M-KPHE----IQEKLGL-TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 68 -------------~-~~~~----~~~~~~~-~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
. +.++ +...+.. ..-..+.+..+.++|.+.++++.+|+.+...
T Consensus 281 ~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~ 342 (354)
T KOG0082|consen 281 KVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT 342 (354)
T ss_pred cCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence 0 1111 1222221 1111256678888999999999999877654
No 246
>CHL00071 tufA elongation factor Tu
Probab=99.10 E-value=9e-10 Score=74.59 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=60.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCH-----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-----HEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-----~~~~ 74 (113)
||||+.+|-......+..+|++++|+|+.... .....+++..+.. .++| +++++||+|+.+.... .++.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~ 155 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVR 155 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 89999988776667788999999999998542 2333444544433 4678 7789999998653221 1222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
+.+....+....++++.+||.++.
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhcc
Confidence 222221222235789999999886
No 247
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.09 E-value=1.6e-10 Score=76.98 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=62.5
Q ss_pred ccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCCCccC
Q psy17510 5 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIR 83 (113)
Q Consensus 5 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~ 83 (113)
.+.|.++...+...++++++|+|+.+... .|...+.+. ..++|+++|+||+|+.+. .....+.+... ....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 35677888888899999999999976431 122222221 136799999999998643 22222222110 0011
Q ss_pred CCCe---EEEeccccCCCCHHHHHHHHHh
Q psy17510 84 DRNW---YVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 84 ~~~~---~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
..++ .++.+||+++.|++++++.+.+
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 1122 4789999999999999998865
No 248
>PRK12288 GTPase RsgA; Reviewed
Probab=99.08 E-value=1.2e-09 Score=72.47 Aligned_cols=89 Identities=21% Similarity=0.137 Sum_probs=63.8
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
..++|.+++|+++....++.....|+..+.. .++|+++|+||+|+.+........+... .+...+++++.+||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 3669999999998876788888888775532 5789999999999965322111211111 112234689999999
Q ss_pred CCCCHHHHHHHHHhh
Q psy17510 96 TADGLYEGLTWLTSN 110 (113)
Q Consensus 96 ~~~~i~~~~~~l~~~ 110 (113)
++.|++++++++...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988754
No 249
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.08 E-value=1.4e-09 Score=68.69 Aligned_cols=51 Identities=20% Similarity=-0.049 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 52 DAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
-+|+++|+||+|+.+ ..+... +.. ..+++++||+++.|++++++.+.+.+.
T Consensus 176 y~p~iiV~NK~Dl~~---~~~~~~-~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 176 YIPCLYVYNKIDLIS---IEELDL-LAR------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred EeeEEEEEECccCCC---HHHHHH-Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 369999999999854 333322 211 124789999999999999999988764
No 250
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.07 E-value=1.3e-09 Score=73.60 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCCCccCchhhHH--------hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPLWR--------HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~--------~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||+|.+.-....+ ..++.||.+++|+|.+.+.+-.+ ...+. . ...++|+++|.||.|+.++.....
T Consensus 271 DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d-~~~~~-~----~~~~~~~i~v~NK~DL~~~~~~~~ 344 (454)
T COG0486 271 DTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKED-LALIE-L----LPKKKPIIVVLNKADLVSKIELES 344 (454)
T ss_pred ecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhh-HHHHH-h----cccCCCEEEEEechhcccccccch
Confidence 8999876655432 36789999999999997522222 22222 1 126799999999999977544322
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+ + . ..+.+++.+|++++.|++.+.+.+.+.+
T Consensus 345 ~-~-~------~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 345 E-K-L------ANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred h-h-c------cCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 2 1 1 1223588999999999999999887653
No 251
>PRK00049 elongation factor Tu; Reviewed
Probab=99.07 E-value=1.8e-09 Score=72.85 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=67.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCCCCCC-HH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDAMK-PH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~-~~----~~~ 74 (113)
||||+.+|..........+|++++|+|+.... .....+++..+.. .++|.+ +++||+|+.+... .+ ++.
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~ 155 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHH
Confidence 89999888776667789999999999997642 2233444544433 467876 5899999864211 11 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC----------CHHHHHHHHHhh
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD----------GLYEGLTWLTSN 110 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~ 110 (113)
+.+....+....++++.+||+++. |+..+++.|.+.
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 222211122345789999999864 466777777653
No 252
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.07 E-value=6.7e-10 Score=66.94 Aligned_cols=97 Identities=16% Similarity=0.013 Sum_probs=61.2
Q ss_pred CCCc-cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 2 VGGQ-DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 2 ~~G~-~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
.||+ .+.-......++.||.+++|+|++.+..... ..+.... .++|++++.||+|+.+........+.+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL------GNKPRIIVLNKADLADPKKTKKWLKYFES- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh------cCCCEEEEEehhhcCChHHHHHHHHHHHh-
Confidence 3454 3444455668899999999999986532211 1122222 35799999999998542111111121111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....++.+||+++.|++++.+.+...
T Consensus 74 ----~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 74 ----KGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 12357899999999999999988765
No 253
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.06 E-value=8.5e-10 Score=69.09 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=48.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+..|......++..+|++++|+|+.+..... ....++.... .++|+++++||+|+.
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~-t~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQ-TETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCcc
Confidence 89999999999999999999999999998754433 2444444433 357999999999975
No 254
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.06 E-value=3.1e-09 Score=68.31 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=46.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|...+..++..+|++++|+|+++..... ....++.+.. .++|+++++||+|+..
T Consensus 70 DtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~~~~----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 70 DTPGYADFVGETRAALRAADAALVVVSAQSGVEVG-TEKLWEFADE----AGIPRIIFINKMDRER 130 (268)
T ss_pred ECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCccCC
Confidence 89999988888888999999999999998753332 2233333322 4689999999999765
No 255
>PRK12740 elongation factor G; Reviewed
Probab=99.05 E-value=4.3e-09 Score=75.21 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=47.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|...+..++..+|++++|+|++...... ...++..+.. .++|+++++||+|+..
T Consensus 66 DtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~-~~~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 66 DTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQ-TETVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred ECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 89999999888888999999999999998754433 2334444432 4689999999999865
No 256
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.04 E-value=1.3e-09 Score=73.71 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=60.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|...+...+..+|++++|+|+..... ....+.+..+... ...++++++||+|+.+... ..++.+.+.
T Consensus 86 DtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 86 DTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred eCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 899999997766668899999999999975421 1122222222221 2346899999999864211 112222221
Q ss_pred C--CccCCCCeEEEeccccCCCCHHH
Q psy17510 79 L--TRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 79 ~--~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
. .......++++++||++|.|+.+
T Consensus 162 ~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 162 AFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHcCCCCccEEEeecccCCCCcc
Confidence 0 00111245799999999999875
No 257
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.03 E-value=6.9e-09 Score=74.37 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=47.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+.++...+..++..+|++++|+|+.+..... ...++..+.. .++|+++++||+|+.+
T Consensus 81 DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 81 DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQ-SETVWRQANR----YEVPRIAFVNKMDKTG 141 (689)
T ss_pred ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 89999999888889999999999999998753333 2334444432 4689999999999875
No 258
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.02 E-value=6.9e-09 Score=72.25 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=46.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|......++..+|++++|+|+++.. ......+++.... .++|+++++||+|+..
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh----cCCCEEEEEECccccC
Confidence 89999999887777889999999999998641 2223444444422 5689999999999854
No 259
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.01 E-value=2.1e-09 Score=63.86 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=55.8
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
.++.+|++++|+|++++.... ...+.+.+... ..++|+++++||+|+.+........+.+... .....+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~--~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE--KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc--cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 567899999999998763211 11222222211 2458999999999986432222223333221 1223578999
Q ss_pred cCCCCHHHHHHHHHhh
Q psy17510 95 TTADGLYEGLTWLTSN 110 (113)
Q Consensus 95 ~~~~~i~~~~~~l~~~ 110 (113)
+++.|++++.+.+...
T Consensus 78 ~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 78 NNPFGKGSLIQLLRQF 93 (157)
T ss_pred cccccHHHHHHHHHHH
Confidence 9999999999888654
No 260
>PLN03127 Elongation factor Tu; Provisional
Probab=99.00 E-value=6e-09 Score=71.31 Aligned_cols=106 Identities=15% Similarity=0.168 Sum_probs=64.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCH-H----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-H----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-~----~~~ 74 (113)
||||+.+|-.........+|++++|+|+.... .....+.+..+.. .++| +++++||+|+.+.... + ++.
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~ 204 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELR 204 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHH
Confidence 89999988765555667899999999987542 2223444444433 4678 5789999998642211 1 111
Q ss_pred HHhCCCccCCCCeEEEecccc---CCCC-------HHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCAT---TADG-------LYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~---~~~~-------i~~~~~~l~~~~ 111 (113)
+.+....+....++++.+|+. ++.| +..+++.+...+
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 222111122235788888875 4444 567777776543
No 261
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.99 E-value=7.8e-10 Score=76.09 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=59.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|...+......+|++++|+|+.....- ...+.+..+... ...|+++++||+|+.+... ..++.+.+.
T Consensus 113 DTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~~~~l~~~l---g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~ 188 (474)
T PRK05124 113 DTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRRHSFIATLL---GIKHLVVAVNKMDLVDYSEEVFERIREDYL 188 (474)
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchHHHHHHHHh---CCCceEEEEEeeccccchhHHHHHHHHHHH
Confidence 8999999976555567999999999999754211 111111112111 2247899999999864211 122222221
Q ss_pred C--CccC-CCCeEEEeccccCCCCHHHH
Q psy17510 79 L--TRIR-DRNWYVQPSCATTADGLYEG 103 (113)
Q Consensus 79 ~--~~~~-~~~~~~~~~sa~~~~~i~~~ 103 (113)
. .... ....+++.+||++|.|+.+.
T Consensus 189 ~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 189 TFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 0 0000 13568999999999998653
No 262
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.98 E-value=2.5e-09 Score=66.55 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=47.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+.+|...+..++..+|++++|+|+++..+.. ...++..... .++|+++++||+|+.
T Consensus 77 DtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 77 DTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred ECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccC
Confidence 89999999988888999999999999998754443 2344554432 358999999999974
No 263
>PLN03126 Elongation factor Tu; Provisional
Probab=98.95 E-value=7.8e-09 Score=71.21 Aligned_cols=93 Identities=20% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC-HH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-PH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~~----~~~ 74 (113)
||||+++|-.........+|++++|+|+.+.. .....+++..+.. .++| +++++||+|+.+... .+ ++.
T Consensus 150 DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~ 224 (478)
T PLN03126 150 DCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVR 224 (478)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHH
Confidence 89999999877777888999999999998642 2333455555533 4677 788999999865221 11 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
+.+....+....++++.+|+.++.
T Consensus 225 ~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 225 ELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHhcCCCcCcceEEEEEccccc
Confidence 222211222346789999998874
No 264
>KOG1144|consensus
Probab=98.93 E-value=3.9e-09 Score=74.88 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=70.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC-------CC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD---RDRIDEARQELHRIINDREMRDAIILIFANKQDLP-------DA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-------~~--- 67 (113)
||||++.|.+++.....-||..|+|+|+.. +++.+. ++.++. .+.|++++.||+|.. +.
T Consensus 546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~----rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRM----RKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHH----HHHHHh----cCCCeEEeehhhhhhcccccCCCchHH
Confidence 899999999999999999999999999974 333332 333432 578999999999942 10
Q ss_pred ----CCHHH-----------HHHHhC---CC---ccC----CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 68 ----MKPHE-----------IQEKLG---LT---RIR----DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 68 ----~~~~~-----------~~~~~~---~~---~~~----~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..... +...|. ++ ++. +..+.++++||.+|.|+.+++-+|+..
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 00011 111121 11 111 234568999999999999999998864
No 265
>KOG1707|consensus
Probab=98.93 E-value=3.1e-09 Score=73.35 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=72.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCCCH--HH----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDR-EMRDAIILIFANKQDLPDAMKP--HE---- 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~--~~---- 72 (113)
||+..+.-+......++.||++.++++++++.+++.. ..|+-.+.+.- ...++|+|+|+||+|.....+. +.
T Consensus 62 D~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~p 141 (625)
T KOG1707|consen 62 DTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLP 141 (625)
T ss_pred ecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHH
Confidence 3444444444557788999999999999999999888 57888886531 1257999999999998765433 11
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
+...+.... .+++|||++..++.++|....+
T Consensus 142 im~~f~EiE------tciecSA~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 142 IMIAFAEIE------TCIECSALTLANVSELFYYAQK 172 (625)
T ss_pred HHHHhHHHH------HHHhhhhhhhhhhHhhhhhhhh
Confidence 222222111 2779999999999999986554
No 266
>COG2262 HflX GTPases [General function prediction only]
Probab=98.90 E-value=2e-08 Score=66.99 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=57.8
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCeEEEecc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
....||+++.|+|++++...+....-..-+ ..-....+|+++|.||+|+..... ...+... . . ..+.+|
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~-~-------~-~~v~iS 337 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEEILAELERG-S-------P-NPVFIS 337 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchhhhhhhhhc-C-------C-CeEEEE
Confidence 456799999999999985544433322222 222235699999999999754322 1111111 1 1 366999
Q ss_pred ccCCCCHHHHHHHHHhhc
Q psy17510 94 ATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~~ 111 (113)
|+++.|++.+++.+...+
T Consensus 338 A~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 338 AKTGEGLDLLRERIIELL 355 (411)
T ss_pred eccCcCHHHHHHHHHHHh
Confidence 999999999999887654
No 267
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.90 E-value=4.9e-09 Score=74.50 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|..........+|++++|+|+..... ....+.+..+... ...|+++++||+|+.+... ..++...+.
T Consensus 110 DtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i~~~i~ 185 (632)
T PRK05506 110 DTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVFDEIVADYR 185 (632)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhHHHHHHHHHHH
Confidence 899999887666667889999999999975421 1112222222211 2368899999999864111 122222221
Q ss_pred C--CccCCCCeEEEeccccCCCCHHH
Q psy17510 79 L--TRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 79 ~--~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
. ....-...+++.+||++|.|+.+
T Consensus 186 ~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 186 AFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHcCCCCccEEEEecccCCCccc
Confidence 0 00111345789999999999873
No 268
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.90 E-value=4.2e-09 Score=67.99 Aligned_cols=89 Identities=15% Similarity=0.030 Sum_probs=58.0
Q ss_pred hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEE
Q psy17510 10 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 89 (113)
Q Consensus 10 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (113)
......++.+|++++|+|+..+.+... ..+.... .++|+++|.||+|+.+........+.+.. .+.++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence 345668899999999999976533221 2223332 35799999999998542212222222211 12357
Q ss_pred EeccccCCCCHHHHHHHHHhh
Q psy17510 90 QPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 90 ~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+.+||+++.|+.++.+.+...
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred EEEECCCcccHHHHHHHHHHH
Confidence 899999999999998877654
No 269
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.89 E-value=1.6e-08 Score=61.80 Aligned_cols=101 Identities=14% Similarity=0.222 Sum_probs=64.7
Q ss_pred ccCchhhHHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH----HHHHHHh
Q psy17510 5 QDKIRPLWRHYYTG---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEKL 77 (113)
Q Consensus 5 ~~~~~~~~~~~~~~---~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~ 77 (113)
++++..+...|++. -.++++++|...+..-.+. +.++-+.+ .++|++++.||+|..+.... ..+.+.+
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence 56677777888765 3788888998765332221 22333322 47999999999998764332 3344444
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...... ..+ ++..|+.++.|++++...|.+.+.
T Consensus 165 ~~~~~~-~~~-~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 165 KKPPPD-DQW-VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cCCCCc-cce-EEEEecccccCHHHHHHHHHHHhh
Confidence 432221 112 778888899999999998877653
No 270
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.89 E-value=8e-09 Score=61.29 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=51.5
Q ss_pred cEEEEEEECCChhhHHHHHHHHH-HHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELH-RIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
|++++|+|+.++.+.. ..++. .... ..++|+++++||+|+.+.....+....+.. ....+++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~----~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRH----SYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHh----hCCceEEEEeccCCc
Confidence 6899999998764333 22333 2222 156899999999998542111111111211 123457899999999
Q ss_pred CHHHHHHHHHh
Q psy17510 99 GLYEGLTWLTS 109 (113)
Q Consensus 99 ~i~~~~~~l~~ 109 (113)
|++++.+.+..
T Consensus 72 gi~~L~~~i~~ 82 (155)
T cd01849 72 GIEKKESAFTK 82 (155)
T ss_pred ChhhHHHHHHH
Confidence 99999998754
No 271
>PRK12739 elongation factor G; Reviewed
Probab=98.87 E-value=2.7e-08 Score=71.45 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=47.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|...+...+..+|++++|+|+...... .....+..+.. .++|+++++||+|+.+
T Consensus 79 DTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~-qt~~i~~~~~~----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 79 DTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEP-QSETVWRQADK----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred cCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 8999998888888899999999999999865322 22344444433 4689999999999875
No 272
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.85 E-value=2.9e-09 Score=71.69 Aligned_cols=109 Identities=27% Similarity=0.442 Sum_probs=80.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---- 66 (113)
|+|||..-++.|.+++.+.++||||+++++ ..++.+...+++.+...+...+.|++|+.||.|+-.
T Consensus 242 DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~ 321 (389)
T PF00503_consen 242 DVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLK 321 (389)
T ss_dssp EETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTT
T ss_pred cCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHcc
Confidence 789999999999999999999999999873 245888899999999888888999999999999411
Q ss_pred --C--------------CCHHHHH----HHhCCCccCC---CCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 67 --A--------------MKPHEIQ----EKLGLTRIRD---RNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 67 --~--------------~~~~~~~----~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
. .+..... +.+....-.. ..+.++.++|.+...+..+|+.+..
T Consensus 322 ~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~ 387 (389)
T PF00503_consen 322 KGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKD 387 (389)
T ss_dssp TSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHH
T ss_pred CCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcC
Confidence 1 1112221 2222111111 5567889999999999999887765
No 273
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=2e-08 Score=58.73 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=47.3
Q ss_pred hhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEe
Q psy17510 14 HYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 91 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (113)
..++.+|++++|+|+.++.+.. ...+++... ..++|+++++||+|+.+........+.+. ..+.+++.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~ 76 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVF 76 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEE
Confidence 4678999999999998764322 223333322 14689999999999854322222222222 12346888
Q ss_pred ccccCCCC
Q psy17510 92 SCATTADG 99 (113)
Q Consensus 92 ~sa~~~~~ 99 (113)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99987653
No 274
>KOG1423|consensus
Probab=98.80 E-value=6.2e-08 Score=62.81 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=60.4
Q ss_pred hhhcCCcEEEEEEECCChhh--HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---------------CC--HHHHH
Q psy17510 14 HYYTGTQGLIFVVDCADRDR--IDEARQELHRIINDREMRDAIILIFANKQDLPDA---------------MK--PHEIQ 74 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------------~~--~~~~~ 74 (113)
.....||.+++|+|++++.. ......-++.. .++|-+++.||.|.... .+ ..++.
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 46778999999999996321 11112223333 46899999999997543 11 22344
Q ss_pred HHhCCCcc-----CCCCe----EEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 75 EKLGLTRI-----RDRNW----YVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 75 ~~~~~~~~-----~~~~~----~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+++..... ...+| .+|.+||++|.|++++.++|..+..
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 44442221 11233 4899999999999999999987653
No 275
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.79 E-value=9.9e-09 Score=66.63 Aligned_cols=88 Identities=17% Similarity=0.102 Sum_probs=57.8
Q ss_pred hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEE
Q psy17510 11 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 90 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (113)
.....++.+|++++|+|+..+.+.. ..++.... .++|+++|.||+|+.+....+...+.+. ..+.+++
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi 84 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSE--NPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKAL 84 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEE
Confidence 3456889999999999997653322 12333332 2589999999999854211112222221 1134678
Q ss_pred eccccCCCCHHHHHHHHHhh
Q psy17510 91 PSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 91 ~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+||+++.|++.+.+.+...
T Consensus 85 ~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 85 AINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred EEECCCcccHHHHHHHHHHH
Confidence 99999999999988877654
No 276
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.1e-08 Score=66.98 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=63.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh------HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR------IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH--- 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--- 71 (113)
|+|||+.|-+-+-.....||+.|+|+|+++.+. -....+..-..+. ..-..+++++||+|..+ .+.+
T Consensus 91 DaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t---lGi~~lIVavNKMD~v~-wde~rf~ 166 (428)
T COG5256 91 DAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART---LGIKQLIVAVNKMDLVS-WDEERFE 166 (428)
T ss_pred eCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh---cCCceEEEEEEcccccc-cCHHHHH
Confidence 899998888766678889999999999986521 1112222222211 12357899999999876 3322
Q ss_pred HHHHHh----CCCccCCCCeEEEeccccCCCCHHH
Q psy17510 72 EIQEKL----GLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 72 ~~~~~~----~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
++.... ....+....++++++|+..|+|+.+
T Consensus 167 ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 167 EIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222221 1222334467899999999999754
No 277
>PRK00007 elongation factor G; Reviewed
Probab=98.76 E-value=1.2e-07 Score=68.12 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=46.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|.......+..+|++++|+|+....... ....+..+.. .++|+++++||+|+.+
T Consensus 81 DTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 81 DTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred eCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 89999888776777888999999999987643222 2444455543 4689999999999864
No 278
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.76 E-value=4.7e-08 Score=66.46 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=74.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
|||||..|..-.+..++=.|++++++|+.+. ....+...+++.+. .+.+.++|+||+|.+++....-+.+.+.+
T Consensus 74 DTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf 148 (603)
T COG1217 74 DTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLF 148 (603)
T ss_pred cCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999863 34444555566654 56777999999998876543322222211
Q ss_pred --C--ccCCCCeEEEeccccCCC----------CHHHHHHHHHhhc
Q psy17510 80 --T--RIRDRNWYVQPSCATTAD----------GLYEGLTWLTSNH 111 (113)
Q Consensus 80 --~--~~~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~~ 111 (113)
- .-.....|++..|++.|. +..-+|+.+..++
T Consensus 149 ~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 149 VELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 1 112356788999998864 3666888877664
No 279
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.70 E-value=9.9e-08 Score=62.92 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=61.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHH--HHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~ 76 (113)
|||||+.|.+-+.---..||+.|+++|+.. .-++.+.+ .+..++ .-.-+++++||+|+.+-.. .+++...
T Consensus 92 DTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~~F~~I~~d 165 (431)
T COG2895 92 DTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEEVFEAIVAD 165 (431)
T ss_pred cCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHHHHHHHHHH
Confidence 899999998877778889999999999953 23444432 333332 2356899999999986321 1222222
Q ss_pred hCC--CccCCCCeEEEeccccCCCCHH
Q psy17510 77 LGL--TRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 77 ~~~--~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
+.. ..+......++++||+.|+|+-
T Consensus 166 y~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 166 YLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHcCCCcceEEechhccCCccc
Confidence 210 0111223468999999998853
No 280
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.68 E-value=1.1e-07 Score=62.34 Aligned_cols=96 Identities=23% Similarity=0.258 Sum_probs=60.6
Q ss_pred HHhhhcCCcEEEEEEECCChh---hHHHHHHHHHHHHc-CcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCCCccCCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCADRD---RIDEARQELHRIIN-DREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRN 86 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~---~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~ 86 (113)
....+.+|.+++.|+|++..+ ..++...+..++.. .+...++|.++|+||+|+... ...+.+.+.+... ..
T Consensus 231 FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~----~~ 306 (369)
T COG0536 231 FLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA----LG 306 (369)
T ss_pred HHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh----cC
Confidence 344678999999999998533 34444444444422 234578999999999996543 2233333333321 12
Q ss_pred eEE-EeccccCCCCHHHHHHHHHhhc
Q psy17510 87 WYV-QPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 87 ~~~-~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. +.+||.+++|++++...+.+.+
T Consensus 307 ~~~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 307 WEVFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred CCcceeeehhcccCHHHHHHHHHHHH
Confidence 221 1299999999999988776543
No 281
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.1e-07 Score=62.13 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=70.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
|.|||+-+-+.+..--.--|+.++|++++.+..-..+.+.+-.+-- ..-+.++++-||+|+.+.... .+..+.|
T Consensus 92 DaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI---igik~iiIvQNKIDlV~~E~AlE~y~qIk~F 168 (415)
T COG5257 92 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI---IGIKNIIIVQNKIDLVSRERALENYEQIKEF 168 (415)
T ss_pred eCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh---hccceEEEEecccceecHHHHHHHHHHHHHH
Confidence 7888876555444444444999999999976554445444443321 134689999999999763221 1122222
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
-.-.. ..+.|++.+||..+.||+.+++.+..++.
T Consensus 169 vkGt~-Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 169 VKGTV-AENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred hcccc-cCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 21111 24568999999999999999999988764
No 282
>PRK01889 GTPase RsgA; Reviewed
Probab=98.65 E-value=3.9e-07 Score=60.88 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=57.5
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
..+.|.+++|+++..+-.......++..+.. .++|.++|.||+|+.+. ..+..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5788999999999744344444555555533 46788999999999653 21122222111 245678999999
Q ss_pred CCCCHHHHHHHHH
Q psy17510 96 TADGLYEGLTWLT 108 (113)
Q Consensus 96 ~~~~i~~~~~~l~ 108 (113)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
No 283
>KOG1490|consensus
Probab=98.65 E-value=3.8e-08 Score=67.34 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=64.6
Q ss_pred cEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCC
Q psy17510 20 QGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTA 97 (113)
Q Consensus 20 ~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 97 (113)
.+|+|+.|++... +......++..+ .+.+.++|.++|+||+|.....+..+-.+++.........++++++|+.+.
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE 326 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence 5789999999754 677777888888 455789999999999998665443333322222222334578999999999
Q ss_pred CCHHHHHHHHHhh
Q psy17510 98 DGLYEGLTWLTSN 110 (113)
Q Consensus 98 ~~i~~~~~~l~~~ 110 (113)
.|+.++....+..
T Consensus 327 egVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 327 EGVMDVRTTACEA 339 (620)
T ss_pred hceeeHHHHHHHH
Confidence 9998887776654
No 284
>PRK13796 GTPase YqeH; Provisional
Probab=98.64 E-value=1.1e-07 Score=63.69 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=51.4
Q ss_pred cCCc-EEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCCCccCCCC---eEEEe
Q psy17510 17 TGTQ-GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTRIRDRN---WYVQP 91 (113)
Q Consensus 17 ~~~~-~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~ 91 (113)
..++ .+++|+|+.+.. ......+.... .++|+++|+||+|+.+.. ..+.+.+... ......+ ..++.
T Consensus 67 ~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKELGLRPVDVVL 138 (365)
T ss_pred cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHhcCCCcCcEEE
Confidence 4444 999999998742 11122233321 367999999999996432 2222221111 0011111 14789
Q ss_pred ccccCCCCHHHHHHHHHhh
Q psy17510 92 SCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~~~ 110 (113)
+||+++.|++++++.+.+.
T Consensus 139 vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998654
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.64 E-value=9.9e-08 Score=58.94 Aligned_cols=81 Identities=21% Similarity=0.205 Sum_probs=52.7
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE--EEEEeCCCCCCC--CCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII--LIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~--ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
++.+|.|+|+.+...... ... .++.. ++++||+|+.+. .....+.+..... +...+++++||
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa 178 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADLGVMERDAKKM---RGEKPFIFTNL 178 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccHHHHHHHHHHh---CCCCCEEEEEC
Confidence 578999999986433211 111 12333 899999999753 2222222222211 23567999999
Q ss_pred cCCCCHHHHHHHHHhhcCC
Q psy17510 95 TTADGLYEGLTWLTSNHKL 113 (113)
Q Consensus 95 ~~~~~i~~~~~~l~~~~~~ 113 (113)
++|+|++++++++.+++.+
T Consensus 179 ~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 179 KTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred CCCCCHHHHHHHHHhhcCc
Confidence 9999999999999987654
No 286
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.63 E-value=1.8e-07 Score=46.03 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=29.8
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 19 TQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 19 ~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
.++++|++|++... +.++...+++++... ..++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 58999999999754 677778888888553 46899999999998
No 287
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.61 E-value=1.3e-07 Score=53.82 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=64.5
Q ss_pred CCCCccCchhhHH----hhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWR----HYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~----~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 75 (113)
||||.-.-.++|- -..+.++.+++|-.++++.+ |.. -+ .....+|+|-+++|.|+.++.+.....+
T Consensus 43 DTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p------~f---~~~~~k~vIgvVTK~DLaed~dI~~~~~ 113 (148)
T COG4917 43 DTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP------GF---LDIGVKKVIGVVTKADLAEDADISLVKR 113 (148)
T ss_pred CCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc------cc---ccccccceEEEEecccccchHhHHHHHH
Confidence 6777543334432 24568999999998887643 221 11 1124567999999999987555444444
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+.+.. .-++|++|+.+++|++++++.|...
T Consensus 114 ~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 114 WLREAG----AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HHHHcC----CcceEEEeccCcccHHHHHHHHHhh
Confidence 443221 2369999999999999999988764
No 288
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.1e-06 Score=59.55 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=48.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||||+.|..-.-.-+..+|..+.|+|+... -...+.++++.+.. .++|++-.+||.|...
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKG-iE~qT~KLfeVcrl----R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG-IEPQTLKLFEVCRL----RDIPIFTFINKLDREG 147 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccC-ccHHHHHHHHHHhh----cCCceEEEeecccccc
Confidence 8999999987666678889999999999853 23345677777753 6899999999999654
No 289
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=5.6e-07 Score=60.72 Aligned_cols=106 Identities=16% Similarity=0.043 Sum_probs=68.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+||++++-+-+-......|..++|+|+++.-.. .+-+.+.-+ +. ......++|+||+|..+.....+..+.....
T Consensus 56 Dvpgh~~~i~~miag~~~~d~alLvV~~deGl~~-qtgEhL~iL-dl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~ 131 (447)
T COG3276 56 DVPGHPDFISNLLAGLGGIDYALLVVAADEGLMA-QTGEHLLIL-DL--LGIKNGIIVLTKADRVDEARIEQKIKQILAD 131 (447)
T ss_pred eCCCcHHHHHHHHhhhcCCceEEEEEeCccCcch-hhHHHHHHH-Hh--cCCCceEEEEeccccccHHHHHHHHHHHHhh
Confidence 7899998877666677889999999999643111 111222222 11 1334569999999987644333333322211
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .-...+++.+|+.+|+||+++.+.|....
T Consensus 132 l-~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 132 L-SLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred c-ccccccccccccccCCCHHHHHHHHHHhh
Confidence 1 12445689999999999999999887654
No 290
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.51 E-value=2.3e-06 Score=56.44 Aligned_cols=55 Identities=31% Similarity=0.312 Sum_probs=38.0
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHH-HHHhhc
Q psy17510 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLT-WLTSNH 111 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~-~l~~~~ 111 (113)
..+|+++++||+|+.+. .+..+.+... ....+++.+||+.+.++.++.+ .+..++
T Consensus 213 t~KPvI~VlNK~Dl~~~---~~~~~~l~~~---~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 213 RSKPMVIAANKADIPDA---ENNISKLRLK---YPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred cCCcEEEEEEHHHccCh---HHHHHHHHhh---CCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 35799999999997532 2222222111 1234689999999999999997 587765
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.50 E-value=1.2e-06 Score=57.98 Aligned_cols=99 Identities=17% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||+|...-... ....||.++++.++.....+.... ..+.+ ..-++|+||+|+.+... ..++.+.
T Consensus 155 eT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~~~el~~~ 222 (332)
T PRK09435 155 ETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRAAAEYRSA 222 (332)
T ss_pred ECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHHHHHHHHH
Confidence 46665422211 456799999998754433333222 11222 23389999999865332 2233333
Q ss_pred hCCCccCCCC--eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRN--WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....-.... .+++.+||+++.|++++++.+.+.+
T Consensus 223 L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 223 LRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3321111112 3799999999999999999988754
No 292
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.46 E-value=2.2e-06 Score=60.70 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----CCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----MKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
+.|+++.|+|+++ ++....+.-++.+ .++|++++.|++|.... .+.+.+.+.++ +|++++|
T Consensus 81 ~~D~ivnVvDAtn---LeRnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG--------vPVv~tv 145 (653)
T COG0370 81 KPDLIVNVVDATN---LERNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG--------VPVVPTV 145 (653)
T ss_pred CCCEEEEEcccch---HHHHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC--------CCEEEEE
Confidence 5699999999987 3444445555554 57899999999997442 34555555555 4688999
Q ss_pred ccCCCCHHHHHHHHHhh
Q psy17510 94 ATTADGLYEGLTWLTSN 110 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~ 110 (113)
|++|.|++++.+.+.+.
T Consensus 146 A~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 146 AKRGEGLEELKRAIIEL 162 (653)
T ss_pred eecCCCHHHHHHHHHHh
Confidence 99999999999988753
No 293
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.45 E-value=3.3e-07 Score=58.07 Aligned_cols=108 Identities=16% Similarity=0.075 Sum_probs=52.5
Q ss_pred CCCCccCchhhHHhhh--------cCCcEEEEEEECCChhhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYY--------TGTQGLIFVVDCADRDRI-DEARQELHRIINDREMRDAIILIFANKQDLPDAM--- 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~--------~~~~~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--- 68 (113)
|||||-++-..|.... ...-++++++|....... .-...++-.+.-. ...+.|.+.|.||+|+.+..
T Consensus 97 DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~~~~~~ 175 (238)
T PF03029_consen 97 DTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLSKYLEF 175 (238)
T ss_dssp E--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-HHHHH
T ss_pred eCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCcccchhHH
Confidence 8999988877665443 456788999998643221 1112222211100 01468999999999997621
Q ss_pred ------C-----------HHHHHHHhCCCccCC-CCe-EEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 ------K-----------PHEIQEKLGLTRIRD-RNW-YVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 ------~-----------~~~~~~~~~~~~~~~-~~~-~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+ ...+.+.... .+.. ... .++.+|+.++.|+.+++..+-+.
T Consensus 176 ~l~~~~d~~~l~~~~~~~~~~l~~~i~~-~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 176 ILEWFEDPDSLEDLLESDYKKLNEEIAE-LLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHSHHHHHHHHHT-HHHHHHHHHH-HCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHH-HHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 0 0111111110 1111 122 68999999999999999877553
No 294
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.44 E-value=2.1e-06 Score=56.20 Aligned_cols=83 Identities=22% Similarity=0.122 Sum_probs=55.2
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccC
Q psy17510 19 TQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 19 ~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 96 (113)
+++|+|+||++..+ +.+....+++++... -+.|+++|+||+|..+.....+.......... .....+++..
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~ 320 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGG----EEPLKISATK 320 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhcc----ccccceeeee
Confidence 68999999999754 677788889998654 34899999999998754444433332221111 1133667777
Q ss_pred CCCHHHHHHHHH
Q psy17510 97 ADGLYEGLTWLT 108 (113)
Q Consensus 97 ~~~i~~~~~~l~ 108 (113)
+.+++.+...+.
T Consensus 321 ~~~~d~~~~~v~ 332 (346)
T COG1084 321 GCGLDKLREEVR 332 (346)
T ss_pred hhhHHHHHHHHH
Confidence 777776665544
No 295
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.43 E-value=2.3e-06 Score=52.71 Aligned_cols=103 Identities=9% Similarity=-0.023 Sum_probs=58.7
Q ss_pred CCCCccCchhhHHhh-----hcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-C-----
Q psy17510 1 DVGGQDKIRPLWRHY-----YTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA-M----- 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~-----~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~----- 68 (113)
||||........+.| +.++|+++++.+.. +... ..+++.+.. .++|+++|+||+|+... .
T Consensus 58 DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~~~~~~ 129 (197)
T cd04104 58 DLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----FSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSNEQRSKP 129 (197)
T ss_pred eCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----CCHHHHHHHHHHHH----hCCCEEEEEecccchhhhhhcccc
Confidence 788875443333333 66789988885432 2222 345555533 36899999999998321 0
Q ss_pred ---CHHHHHHHhCC---CccC---CCCeEEEecccc--CCCCHHHHHHHHHhhc
Q psy17510 69 ---KPHEIQEKLGL---TRIR---DRNWYVQPSCAT--TADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ---~~~~~~~~~~~---~~~~---~~~~~~~~~sa~--~~~~i~~~~~~l~~~~ 111 (113)
...++.+.+.. ..+. ...-++|.+|+. .+.|+..+.+.+...+
T Consensus 130 ~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 130 RSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 11122221110 0111 122368899998 5678888888887654
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.41 E-value=8.7e-07 Score=55.00 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCCCCCCC--HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 52 DAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.|.++++||+|+.+... ..++.+.... . ...++++.+||+++.|++++++++.++.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~--~-~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKK--I-NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHH--h-CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999965322 2233332221 1 1346899999999999999999998764
No 297
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.37 E-value=3.1e-06 Score=55.39 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=51.3
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHh--CCCcc--C--CCCeE
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL--GLTRI--R--DRNWY 88 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~--~~~~~--~--~~~~~ 88 (113)
....+|.++++.++... ++.......+ .++|.++++||+|+.+..........+ ....+ . ....+
T Consensus 144 i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 214 (300)
T TIGR00750 144 IANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPP 214 (300)
T ss_pred HHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCC
Confidence 45567888877544322 2222222223 357889999999987643322111111 11111 1 11235
Q ss_pred EEeccccCCCCHHHHHHHHHhh
Q psy17510 89 VQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 89 ~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
++.+||+++.|++++++++...
T Consensus 215 v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 215 VLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred EEEEEccCCCCHHHHHHHHHHH
Confidence 8999999999999999998764
No 298
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.35 E-value=1.9e-06 Score=54.39 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCCCccCchh-----hHHhhhcCCcEEEEEEECCChhhHH---HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRP-----LWRHYYTGTQGLIFVVDCADRDRID---EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~-----~~~~~~~~~~~vi~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
|+|||..+-. ..+..++++.++|||+|+...+..+ .....++.+.+. .+++.+.+.+.|+|+.......+
T Consensus 54 D~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~ 131 (232)
T PF04670_consen 54 DCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREE 131 (232)
T ss_dssp EE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHH
T ss_pred EcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHH
Confidence 7899975533 4677899999999999998433222 223344444332 37899999999999865322111
Q ss_pred ----HHHHhCCC--ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 ----IQEKLGLT--RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ----~~~~~~~~--~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..... ......+.++.||.-+ ..+.+.+-.+++.+
T Consensus 132 ~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 132 IFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp HHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHH
Confidence 11111110 0111247899999866 57777777776543
No 299
>KOG0085|consensus
Probab=98.30 E-value=1.8e-07 Score=58.79 Aligned_cols=109 Identities=24% Similarity=0.424 Sum_probs=78.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-C
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-K 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~ 69 (113)
|++||..-++.|-|++.+.-.++|++..+ +..+.++...++..+...|...+.++++..||.|+.+.. .
T Consensus 205 DvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ 284 (359)
T KOG0085|consen 205 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIL 284 (359)
T ss_pred ecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhh
Confidence 78999999999999999998888887665 345677778899999999999999999999999986531 1
Q ss_pred H----------------HHHHHHhCCC------ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 70 P----------------HEIQEKLGLT------RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 70 ~----------------~~~~~~~~~~------~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
- .+.+..+.+. .-..+-+.-+.++|.+.++|..+|..+..
T Consensus 285 ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkD 346 (359)
T KOG0085|consen 285 YSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKD 346 (359)
T ss_pred HHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHH
Confidence 1 1112222211 11122344578889999999988876543
No 300
>KOG0099|consensus
Probab=98.29 E-value=1.2e-06 Score=55.93 Aligned_cols=65 Identities=38% Similarity=0.696 Sum_probs=56.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
|++||+.-++.|-+++++.-++|||+.++. +.++.+...+++.+-+++....+.+++..||.|+.
T Consensus 208 DVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 208 DVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 282 (379)
T ss_pred ccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence 799999999999999999999999998873 34677778888888877777889999999999963
No 301
>KOG0458|consensus
Probab=98.26 E-value=9.5e-07 Score=61.40 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=62.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHH-------HHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CC-HH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE-------ARQELHRIINDREMRDAIILIFANKQDLPDA-MK-PH 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~-~~ 71 (113)
|+|||..|-.-+-.....||+.++|+|++. ..|+. +.+....++. ..-..+++++||+|+.+= .+ .+
T Consensus 261 DaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~---Lgi~qlivaiNKmD~V~Wsq~RF~ 336 (603)
T KOG0458|consen 261 DAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRS---LGISQLIVAINKMDLVSWSQDRFE 336 (603)
T ss_pred cCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHH---cCcceEEEEeecccccCccHHHHH
Confidence 899998887766667788999999999984 22222 2222222221 134689999999998651 11 22
Q ss_pred HHHHHhC-----CCccCCCCeEEEeccccCCCCHHH
Q psy17510 72 EIQEKLG-----LTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 72 ~~~~~~~-----~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
++...++ ...+....+.+++||+.+|+|+..
T Consensus 337 eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 337 EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 3333332 122334566799999999999653
No 302
>PTZ00416 elongation factor 2; Provisional
Probab=98.24 E-value=2.5e-06 Score=62.68 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=47.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+..|.......+..+|++|+|+|+...-... ....++.+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 89999999888888899999999999998643222 3455555543 468999999999986
No 303
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.24 E-value=3.5e-06 Score=61.06 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+.+|.......+..+|++++|+|+......+ ....++.... .+.|+++++||+|...
T Consensus 92 DTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 92 DTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred eCCCccccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 89999999988888999999999999997642222 2333333322 3578899999999754
No 304
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.22 E-value=2.9e-06 Score=62.38 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=47.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
|||||..|.......+..+|++|+|+|+...-.. .+...++.+.. .++|+++++||+|..
T Consensus 104 DtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 8999999988888889999999999999864222 23445555543 578999999999976
No 305
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=7.2e-06 Score=53.35 Aligned_cols=95 Identities=24% Similarity=0.142 Sum_probs=62.7
Q ss_pred hhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCe
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 87 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 87 (113)
..+.+.-..+.|-+++|+.+.+|+ +.....+++-.+- ..++..+++.||+|+.+...... + .........++
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae----~~gi~pvIvlnK~DL~~~~~~~~--~-~~~~~y~~~gy 142 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE----AGGIEPVIVLNKIDLLDDEEAAV--K-ELLREYEDIGY 142 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH----HcCCcEEEEEEccccCcchHHHH--H-HHHHHHHhCCe
Confidence 344455555677777777777664 5555555555552 25777788899999976433332 1 11122334677
Q ss_pred EEEeccccCCCCHHHHHHHHHhh
Q psy17510 88 YVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 88 ~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+++.+|++++.|+.++.+.+...
T Consensus 143 ~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 143 PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred eEEEecCcCcccHHHHHHHhcCC
Confidence 89999999999999999887654
No 306
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.17 E-value=4.2e-06 Score=60.78 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=45.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+..|.......+..+|++++|+|+..... ......+..... .++|.++++||+|..
T Consensus 93 DtPG~~df~~~~~~~l~~~D~avlVvda~~g~~-~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 93 DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM-PQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cCCCccChHHHHHHHHHhcCEEEEEEECCCCCC-ccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 899999998888889999999999999876422 223344444433 356889999999975
No 307
>KOG1191|consensus
Probab=98.15 E-value=1.4e-05 Score=54.91 Aligned_cols=110 Identities=21% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCCCccCc-hhh--------HHhhhcCCcEEEEEEECC--ChhhHHHHHHHHHHHHc-----CcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKI-RPL--------WRHYYTGTQGLIFVVDCA--DRDRIDEARQELHRIIN-----DREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~-~~~--------~~~~~~~~~~vi~v~d~~--~~~~~~~~~~~~~~~~~-----~~~~~~~p~ilv~nK~D~ 64 (113)
||+|..+- ..- -+.-...||++++|+|+. ..++.....+.++.... .+...+.|++++.||.|+
T Consensus 322 DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~ 401 (531)
T KOG1191|consen 322 DTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL 401 (531)
T ss_pred eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhc
Confidence 78887661 111 133567899999999994 33333332333333311 122345799999999998
Q ss_pred CCCCCH-HHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 65 PDAMKP-HEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 65 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+... ......+.........-...++|+++++|+..+.+.+...
T Consensus 402 ~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 402 VSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred cCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence 765321 1100111111111112235569999999999998877654
No 308
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.15 E-value=2.3e-05 Score=52.74 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCCCccCchhh--HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHH--
Q psy17510 1 DVGGQDKIRPL--WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK-- 76 (113)
Q Consensus 1 D~~G~~~~~~~--~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-- 76 (113)
||.|||+|.+. +...-+..|-.++++.+++..+. -..+.+--.. ..+.|++++.+|+|+.+....+.+.+.
T Consensus 207 DtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~~----a~~lPviVvvTK~D~~~ddr~~~v~~ei~ 281 (527)
T COG5258 207 DTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIAL----AMELPVIVVVTKIDMVPDDRFQGVVEEIS 281 (527)
T ss_pred ecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhhh----hhcCCEEEEEEecccCcHHHHHHHHHHHH
Confidence 89999999753 34455678889999988764221 1123332221 257899999999999775433322221
Q ss_pred --hC----CCcc---------------CCC-CeEEEeccccCCCCHHHHHHH
Q psy17510 77 --LG----LTRI---------------RDR-NWYVQPSCATTADGLYEGLTW 106 (113)
Q Consensus 77 --~~----~~~~---------------~~~-~~~~~~~sa~~~~~i~~~~~~ 106 (113)
+. .++. .+. -+|++.+|+-+|.|++-+.+.
T Consensus 282 ~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 282 ALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred HHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 11 0000 012 369999999999998754443
No 309
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.06 E-value=1.2e-05 Score=50.67 Aligned_cols=87 Identities=6% Similarity=-0.059 Sum_probs=49.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCCCCCCCC-HHHHH----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDLPDAMK-PHEIQ---- 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~-~~~~~---- 74 (113)
||||.- ..+.. ..+.+|++++|+|.+...... ...++..+.. .+.|. ++++||+|+.+... ..++.
T Consensus 89 DtPg~~--~~~l~-~ak~aDvVllviDa~~~~~~~-~~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~ 160 (225)
T cd01882 89 ECPNDI--NAMID-IAKVADLVLLLIDASFGFEME-TFEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLK 160 (225)
T ss_pred eCCchH--HHHHH-HHHhcCEEEEEEecCcCCCHH-HHHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHH
Confidence 677653 33333 467899999999997543222 2233333322 35675 45999999864221 22222
Q ss_pred HHhCCCccCCCCeEEEeccccCC
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTA 97 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~ 97 (113)
+.+..... .+.+++.+||++.
T Consensus 161 ~~~~~~~~--~~~ki~~iSa~~~ 181 (225)
T cd01882 161 HRFWTEVY--QGAKLFYLSGIVH 181 (225)
T ss_pred HHHHHhhC--CCCcEEEEeeccC
Confidence 22221122 3458999999876
No 310
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2.6e-05 Score=50.80 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC-----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-----PHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-----~~~~~ 74 (113)
|+|||..|-+-+--.-+..|+.|+|+.+++.. .....+.+...++ -++| ++++.||+|+.++.. ..++.
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlarq----vGvp~ivvflnK~Dmvdd~ellelVemEvr 155 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVR 155 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHH
Confidence 89999888665544667789999999988732 1222222222222 4564 678899999987433 22455
Q ss_pred HHhCCCccCCCCeEEEeccccCCC-C-------HHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD-G-------LYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~-~-------i~~~~~~l~~~~ 111 (113)
+.++...+..-..|++.-||+..- | |.++.+.+-+++
T Consensus 156 eLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 156 ELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 555555555667888888875422 1 456666555543
No 311
>KOG0461|consensus
Probab=97.98 E-value=2.7e-05 Score=51.84 Aligned_cols=105 Identities=14% Similarity=0.043 Sum_probs=60.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~ 75 (113)
|+|||...-+..-..-+--|..++|+|+.... +-...--.+.++. -...++|+||+|..++.. .+...+
T Consensus 76 DCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~k 149 (522)
T KOG0461|consen 76 DCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAK 149 (522)
T ss_pred eCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHH
Confidence 78888554443333444458999999997532 1111112233332 245688889998755322 222222
Q ss_pred HhCC---CccCCCCeEEEeccccCC----CCHHHHHHHHHhhc
Q psy17510 76 KLGL---TRIRDRNWYVQPSCATTA----DGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~---~~~~~~~~~~~~~sa~~~----~~i~~~~~~l~~~~ 111 (113)
+... ..--....|++++||+.| +++.++.+.|.+.+
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 2211 111124578999999999 77888887776553
No 312
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.3e-05 Score=54.33 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=53.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---CCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~ 77 (113)
|||||=.|..-....+.-+|+.++|+|+...- -..+...+++..+ .++|.++++||+|.... ....++...+
T Consensus 82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV-~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l 156 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGV-EPQTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERL 156 (697)
T ss_pred CCCCccccHHHHHHHHHhhcceEEEEECCCCe-eecHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHh
Confidence 89999999999999999999999999998632 1223445555544 57999999999997653 2344454444
Q ss_pred C
Q psy17510 78 G 78 (113)
Q Consensus 78 ~ 78 (113)
+
T Consensus 157 ~ 157 (697)
T COG0480 157 G 157 (697)
T ss_pred C
Confidence 4
No 313
>KOG0466|consensus
Probab=97.84 E-value=1.6e-05 Score=52.07 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=68.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH---HHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH---EIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---~~~~~~ 77 (113)
|+|||+-+-+.+..-..--|+.++++..+.+..-....+.+..+-. ++=+-++++-||+|+....... +...+|
T Consensus 131 DCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---M~LkhiiilQNKiDli~e~~A~eq~e~I~kF 207 (466)
T KOG0466|consen 131 DCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---MKLKHIIILQNKIDLIKESQALEQHEQIQKF 207 (466)
T ss_pred cCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---hhhceEEEEechhhhhhHHHHHHHHHHHHHH
Confidence 7888876555444343444888888887764443344444443321 1236789999999986543211 122222
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
-... ...+.|++.+||.-..+++-+.+.++..+.
T Consensus 208 i~~t-~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 208 IQGT-VAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred Hhcc-ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 2211 234668999999999999999999998765
No 314
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.84 E-value=0.00014 Score=40.92 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=28.4
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
.+..+|++++|+|..++.. +...++++.+. .++|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPIT-EDDKNILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----cCCCEEEEEcC
Confidence 4489999999999776311 22234444441 57899999998
No 315
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.82 E-value=9.9e-05 Score=48.13 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=54.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCCCc--cCCCCe--EEEe
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTR--IRDRNW--YVQP 91 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~--~~~~ 91 (113)
+-+|.+++|.-+.-.+..+....=+-++ -=++|+||.|..+.. ...++...+.... ....+| +++.
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~ 233 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVT 233 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeE
Confidence 4578888877655443344333222222 238999999965532 2345555554432 344555 7999
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q psy17510 92 SCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~~~~ 111 (113)
+||.+++|++++.+.+....
T Consensus 234 t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 234 TSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred eeeccCCCHHHHHHHHHHHH
Confidence 99999999999999887643
No 316
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.82 E-value=2.5e-05 Score=50.68 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=29.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
++|+++|+++.+.........+.++.+. .++|+++|+||+|+..
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 5788999998875222222244555553 2589999999999854
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.80 E-value=0.00055 Score=43.61 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=36.1
Q ss_pred hhHHhhhcC-CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 10 PLWRHYYTG-TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 10 ~~~~~~~~~-~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
.+...|++. .+.+++|+|+...-.-.+...+.+.+.. .++|+++|+||.|..+.
T Consensus 153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~----~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP----QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH----cCCcEEEEEECCCCCCc
Confidence 356678884 4688999988653333333444455532 57899999999998653
No 318
>KOG0460|consensus
Probab=97.80 E-value=0.00011 Score=48.89 Aligned_cols=91 Identities=25% Similarity=0.196 Sum_probs=59.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~ 75 (113)
|+|||..|-+-+----..-|+.|+|+.+++.. .....+.+....|. .=..+++.+||.|+.++.. .-++.+
T Consensus 123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RE 198 (449)
T KOG0460|consen 123 DCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRE 198 (449)
T ss_pred CCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHH
Confidence 88999877654444555669999999998742 33344444444432 2246788999999875322 124455
Q ss_pred HhCCCccCCCCeEEEecccc
Q psy17510 76 KLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~ 95 (113)
.++...+++-.+|++.-||+
T Consensus 199 lLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHcCCCCCCCCeeecchh
Confidence 55555566777888888764
No 319
>KOG0468|consensus
Probab=97.79 E-value=5.5e-05 Score=54.09 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=47.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|||||=.|..-....+.-+|++++|+|+...-.+. ..++++...+ ...|+++++||.|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHh----ccCcEEEEEehhHH
Confidence 89999999888888889999999999998654444 3445555554 46899999999994
No 320
>KOG1707|consensus
Probab=97.78 E-value=0.00028 Score=49.65 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=59.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-----CCHHHHHHHhCCCccCCCCeEEEe
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-----MKPHEIQEKLGLTRIRDRNWYVQP 91 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 91 (113)
..||+++++||.+++.+++.....++..... .+.|+++|++|+|+.+. ....+++..++++.- . .
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P------~-~ 563 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPP------I-H 563 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCC------e-e
Confidence 5789999999999999999888777766443 67999999999998653 335677777775431 2 4
Q ss_pred ccccCCCCHHHHHHHHHhh
Q psy17510 92 SCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~~~ 110 (113)
.|.++... ..+|..|+..
T Consensus 564 ~S~~~~~s-~~lf~kL~~~ 581 (625)
T KOG1707|consen 564 ISSKTLSS-NELFIKLATM 581 (625)
T ss_pred eccCCCCC-chHHHHHHHh
Confidence 44443222 6788877754
No 321
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.77 E-value=1.6e-05 Score=50.76 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=51.3
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCe--EEEec
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNW--YVQPS 92 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~ 92 (113)
..-+|.+++|..+.-.+..+....=+-+ +.=++|+||.|.+.... ..++...+....-....| |++.|
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~t 210 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKT 210 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEE
T ss_pred HHhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEE
Confidence 4568999999987654333322222222 23489999999654322 334444443222223344 89999
Q ss_pred cccCCCCHHHHHHHHHhh
Q psy17510 93 CATTADGLYEGLTWLTSN 110 (113)
Q Consensus 93 sa~~~~~i~~~~~~l~~~ 110 (113)
||.++.|++++.+.+.++
T Consensus 211 sA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 211 SALEGEGIDELWEAIDEH 228 (266)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 999999999999988764
No 322
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.77 E-value=0.00037 Score=47.48 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHH-HHHHHHhhc
Q psy17510 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYE-GLTWLTSNH 111 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~-~~~~l~~~~ 111 (113)
..+|+++|+||.|..... ..+.+.... ....++.+||+.+.++.. +.+.+.+++
T Consensus 216 t~KPvI~VlNK~D~~~~~--~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 216 ISKPMVIAANKADLPPAE--ENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred cCCCEEEEEEchhcccch--HHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 358999999999975311 112211111 223588999999999888 666665543
No 323
>KOG1424|consensus
Probab=97.76 E-value=5.8e-05 Score=52.28 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=53.6
Q ss_pred cCchhhHHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccC
Q psy17510 6 DKIRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR 83 (113)
Q Consensus 6 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 83 (113)
+.++.+|+ .+..+|+|+.++|+.++--|. +...++.+. ...+-.++++||.||.+........+.|..
T Consensus 163 E~WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~-----d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~---- 232 (562)
T KOG1424|consen 163 EIWRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEV-----DPSKANVLLVNKADLLPPEQRVAWAEYFRQ---- 232 (562)
T ss_pred HHHHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhcc-----ccccceEEEEehhhcCCHHHHHHHHHHHHh----
Confidence 45677887 789999999999999864322 223333333 134678999999999775444444444443
Q ss_pred CCCeEEEeccccC
Q psy17510 84 DRNWYVQPSCATT 96 (113)
Q Consensus 84 ~~~~~~~~~sa~~ 96 (113)
.+++++..||..
T Consensus 233 -~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 233 -NNIPVVFFSALA 244 (562)
T ss_pred -cCceEEEEeccc
Confidence 346777888765
No 324
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.68 E-value=0.0001 Score=43.99 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=39.1
Q ss_pred CCCCcc----CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 1 DVGGQD----KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 1 D~~G~~----~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
||||.. ....++..|+..+|++|+|.+++...+-.+...+.+.... ....+++|.||.
T Consensus 107 DtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 107 DTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp EEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred eCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 677753 2336788899999999999999875544444444444432 344588999984
No 325
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.68 E-value=6e-05 Score=46.22 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=50.0
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHc-CcCCCCCeEEEEEeCCCCCCCCCH--HHHHHHhCCCccCCCCeEEEecccc
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIIN-DREMRDAIILIFANKQDLPDAMKP--HEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
.+.-|+|+|++..+-. -.+ .|.... -=++|+||.|+.+.... +...+... . -+...+++++|++
T Consensus 118 d~~~v~VidvteGe~~---------P~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~--~-~np~~~ii~~n~k 184 (202)
T COG0378 118 DHLRVVVIDVTEGEDI---------PRKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAK--E-VNPEAPIIFTNLK 184 (202)
T ss_pred hceEEEEEECCCCCCC---------cccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHH--H-hCCCCCEEEEeCC
Confidence 3477888888753110 001 122222 34889999999775432 22222111 0 1356789999999
Q ss_pred CCCCHHHHHHHHHhhc
Q psy17510 96 TADGLYEGLTWLTSNH 111 (113)
Q Consensus 96 ~~~~i~~~~~~l~~~~ 111 (113)
+|+|++++++|+....
T Consensus 185 tg~G~~~~~~~i~~~~ 200 (202)
T COG0378 185 TGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCcCHHHHHHHHHhhc
Confidence 9999999999998764
No 326
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.64 E-value=7.5e-05 Score=42.08 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=49.1
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEec
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 92 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (113)
..+++.++.++.|++.....+++.. |...+.... ..+.|.++++||.|+.+... +.+.... +++++
T Consensus 41 ~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~---~~~~~~~--------~~~~~ 106 (124)
T smart00010 41 PTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQ---VATEEGL--------EFAET 106 (124)
T ss_pred ccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCc---CCHHHHH--------HHHHH
Confidence 4467788999999999988777644 665554332 24578899999999743211 1111111 24478
Q ss_pred cccCCCCHH
Q psy17510 93 CATTADGLY 101 (113)
Q Consensus 93 sa~~~~~i~ 101 (113)
|++++.|+.
T Consensus 107 s~~~~~~~~ 115 (124)
T smart00010 107 SAKTPEEGE 115 (124)
T ss_pred hCCCcchhh
Confidence 999998874
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.64 E-value=8.1e-05 Score=48.51 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=39.5
Q ss_pred CCeEEEEEeCCCCCCCC--CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 52 DAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+-++++||+|+.+.. ..+.+.+.... .....+++.+||++++|++++.+||..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999996532 23333333221 1245679999999999999999999864
No 328
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.57 E-value=7.6e-05 Score=45.18 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=28.1
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHH-HcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELHRI-INDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
|++++|+|+..+.+... ..+.+.+ ... .++|+++++||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~---~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAG---GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhcc---CCCCEEEEEehhhcCCH
Confidence 78999999987532111 1222221 221 46899999999999653
No 329
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.50 E-value=0.0012 Score=42.80 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=68.9
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-----
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM----- 68 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----- 68 (113)
||||.+. ++.....++...|.++.+++..++.---+ ..+++.+... .-+.|+++++|..|+..+.
T Consensus 93 DtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~ 169 (296)
T COG3596 93 DTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDS 169 (296)
T ss_pred cCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHh--ccCceeEEEEehhhhhcccccccc
Confidence 7888654 67778889999999999999987632111 3344444332 2458999999999964431
Q ss_pred -----C--HHHHHHHhCC---CccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 69 -----K--PHEIQEKLGL---TRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 69 -----~--~~~~~~~~~~---~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+ .++..+.... ..+ ..--|++..+...+-|++.+...++..+.
T Consensus 170 ~~~~p~~a~~qfi~~k~~~~~~~~-q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 170 AGHQPSPAIKQFIEEKAEALGRLF-QEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHH-hhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 1111111100 011 11236788888999999999998887654
No 330
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.43 E-value=0.00073 Score=41.55 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=49.7
Q ss_pred hhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC---CCccCCCCeEEE
Q psy17510 15 YYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG---LTRIRDRNWYVQ 90 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 90 (113)
...+.|++++|++..+. .......+++...... ..-.+++++.|+.|........++..... .......+-.++
T Consensus 80 ~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 80 SAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred cCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 34678999999998762 1223334455544321 12258899999999755433332221111 000001111122
Q ss_pred ec-----cccCCCCHHHHHHHHHhhc
Q psy17510 91 PS-----CATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 91 ~~-----sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ++..+.++.++++.+.+.+
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 22 2456677888888776543
No 331
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.38 E-value=0.00042 Score=46.01 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=55.2
Q ss_pred CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCC
Q psy17510 7 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRN 86 (113)
Q Consensus 7 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 86 (113)
++...........|+|+-|+|+.++.+-. ...+..+. .++|.++++||.|+.+........+.+... .+
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~--~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~----~~ 91 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTR--NPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKE----EG 91 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEecccccccc--CccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhc----CC
Confidence 45556667889999999999999874321 22334443 346669999999997744444444444322 13
Q ss_pred eEEEeccccCCCCHHHHH
Q psy17510 87 WYVQPSCATTADGLYEGL 104 (113)
Q Consensus 87 ~~~~~~sa~~~~~i~~~~ 104 (113)
...+.+++..+.+...+.
T Consensus 92 ~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred CccEEEEeecccCccchH
Confidence 334577777777655555
No 332
>KOG1532|consensus
Probab=97.35 E-value=0.0021 Score=41.83 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=52.8
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-------CHHHHHHHhCC---CccC--
Q psy17510 19 TQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-------KPHEIQEKLGL---TRIR-- 83 (113)
Q Consensus 19 ~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~---~~~~-- 83 (113)
.-+++|++|.... .+|=..+-+-..++.. .+.|++++.||+|+.+.. +.+.+.+++.. .+..
T Consensus 148 ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l 224 (366)
T KOG1532|consen 148 PTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNL 224 (366)
T ss_pred CeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHh
Confidence 3577888887642 2343333333444432 578999999999986631 11122222220 0110
Q ss_pred --C---------CCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 84 --D---------RNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 84 --~---------~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
. ..+...-+|+.+|.|.+++|..+-.
T Consensus 225 ~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~ 261 (366)
T KOG1532|consen 225 TRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDE 261 (366)
T ss_pred hhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHH
Confidence 0 2456789999999999999987654
No 333
>KOG0465|consensus
Probab=97.30 E-value=0.0013 Score=46.83 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=44.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||||-.|.--.+..+.--|+.++|+|.... -...+....++..+ -++|.+..+||+|..+
T Consensus 110 DTPGHvDFT~EVeRALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 110 DTPGHVDFTFEVERALRVLDGAVLVLDAVAG-VESQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred cCCCceeEEEEehhhhhhccCeEEEEEcccc-eehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 8999999988888888888999999988643 12222333444433 4799999999999544
No 334
>KOG1143|consensus
Probab=97.10 E-value=0.0029 Score=42.92 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=59.0
Q ss_pred CCCCccCchhhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~ 74 (113)
|.+|+.+|.+..-+.+. ..|..++|+.+...-... ..+.+..+.- -++|++++++|+|+.+... .+++.
T Consensus 255 DLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~tv~~l~ 329 (591)
T KOG1143|consen 255 DLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKTVKDLS 329 (591)
T ss_pred ecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchhHHHHHHHHH
Confidence 67899888775443222 246667777665431111 1233333322 4799999999999876422 22333
Q ss_pred HHhCC---------------------CccCCCCeEEEeccccCCCCHHHHHHH
Q psy17510 75 EKLGL---------------------TRIRDRNWYVQPSCATTADGLYEGLTW 106 (113)
Q Consensus 75 ~~~~~---------------------~~~~~~~~~~~~~sa~~~~~i~~~~~~ 106 (113)
..+.. +....+-+|+|-+|..+|+|++-+...
T Consensus 330 nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 330 NLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 22211 112234568999999999998765543
No 335
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.05 E-value=0.0016 Score=43.17 Aligned_cols=52 Identities=21% Similarity=0.065 Sum_probs=38.1
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.-+|.+.+.||+|+.+......+.+.. ..+.+||.++.|++++.+.+-+.+.
T Consensus 238 vY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 238 VYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 358999999999987622222222221 3779999999999999998877654
No 336
>KOG2484|consensus
Probab=96.95 E-value=0.0027 Score=43.09 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=41.0
Q ss_pred hhHHhhhcCCcEEEEEEECCChhh--HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q psy17510 10 PLWRHYYTGTQGLIFVVDCADRDR--IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 77 (113)
Q Consensus 10 ~~~~~~~~~~~~vi~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 77 (113)
+-.+..+..+|+||.|+|+.+|.+ -.+...++... ..++..|+|.||+|+.+....++....+
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-----~gnKkLILVLNK~DLVPrEv~e~Wl~YL 202 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-----HGNKKLILVLNKIDLVPREVVEKWLVYL 202 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-----cCCceEEEEeehhccCCHHHHHHHHHHH
Confidence 334556778999999999998743 22223333222 2458999999999998755444443333
No 337
>KOG0463|consensus
Probab=96.95 E-value=0.0023 Score=43.48 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=52.9
Q ss_pred CCCCccCchhhHHhhhcC--CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHH---
Q psy17510 1 DVGGQDKIRPLWRHYYTG--TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE--- 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~--~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~--- 75 (113)
|.+|+|+|.+....-+.+ .|-..+++-.+-. -..-..+.+...+ .-.+|+++|.+|+|+-++.-.++-.+
T Consensus 225 DLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLAL----aL~VPVfvVVTKIDMCPANiLqEtmKll~ 299 (641)
T KOG0463|consen 225 DLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLAL----ALHVPVFVVVTKIDMCPANILQETMKLLT 299 (641)
T ss_pred eccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhh----hhcCcEEEEEEeeccCcHHHHHHHHHHHH
Confidence 567777776643322221 2444555544321 1111122222222 24689999999999865422222111
Q ss_pred -HhC---------------------CCccCCCCeEEEeccccCCCCHHHHHHH
Q psy17510 76 -KLG---------------------LTRIRDRNWYVQPSCATTADGLYEGLTW 106 (113)
Q Consensus 76 -~~~---------------------~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 106 (113)
.+. .++-..+-||+|++|..+|+++.-+...
T Consensus 300 rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 300 RLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 111 1112234589999999999998765543
No 338
>KOG3886|consensus
Probab=96.76 E-value=0.01 Score=37.82 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=43.8
Q ss_pred CCCCccCc-hh----hHHhhhcCCcEEEEEEECCChhhHHHHH---HHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKI-RP----LWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~-~~----~~~~~~~~~~~vi~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
|++||+.+ .+ ...+-+.+.+++|+|||++..+-..+.. .-++.+.+. ++...++....|+|+...
T Consensus 59 DcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 59 DCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred ccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhccc
Confidence 78898733 22 3456788999999999998654333322 223444443 467789999999998764
No 339
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.57 E-value=0.032 Score=38.72 Aligned_cols=90 Identities=10% Similarity=0.075 Sum_probs=52.3
Q ss_pred Hhhhc-CCcEEEEEE-ECCC----hh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCC
Q psy17510 13 RHYYT-GTQGLIFVV-DCAD----RD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 85 (113)
Q Consensus 13 ~~~~~-~~~~vi~v~-d~~~----~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 85 (113)
+..+. +++..|+|. |.+- +. -.+...+++.++.+ .++|++++.||+|-.... ..++.+.+... .
T Consensus 138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~ek----y 208 (492)
T TIGR02836 138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE-TEALRQELEEK----Y 208 (492)
T ss_pred HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch-hHHHHHHHHHH----h
Confidence 34555 889999888 6641 12 23334577777754 589999999999932111 22222222111 1
Q ss_pred CeEEEeccc--cCCCCHHHHHHHHHhhc
Q psy17510 86 NWYVQPSCA--TTADGLYEGLTWLTSNH 111 (113)
Q Consensus 86 ~~~~~~~sa--~~~~~i~~~~~~l~~~~ 111 (113)
+++++.+|+ .+...+..+++.+.-.+
T Consensus 209 ~vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 209 DVPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred CCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 234555555 55567777777766544
No 340
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.53 E-value=0.031 Score=33.74 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=40.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||+... ......+..+|.+++++.++. .+......+++.+.+ .+.|+.+++||.|...
T Consensus 99 Dtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 99 DGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred ECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 6775532 233446688999999998873 456666666666543 3567899999999654
No 341
>KOG1954|consensus
Probab=96.34 E-value=0.015 Score=39.61 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=44.6
Q ss_pred CCCCccCchhh-----------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIRPL-----------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~~~-----------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||...-+++ .+-+..++|.+|++||+-.-+--++..+.+..+.. ..=.+-+|.||.|..+
T Consensus 153 dtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADqVd--- 225 (532)
T KOG1954|consen 153 DTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQVD--- 225 (532)
T ss_pred ccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccccC---
Confidence 67775444333 33467799999999998643333344455555543 2346778999999765
Q ss_pred HHHHHHHhC
Q psy17510 70 PHEIQEKLG 78 (113)
Q Consensus 70 ~~~~~~~~~ 78 (113)
.+++...++
T Consensus 226 tqqLmRVyG 234 (532)
T KOG1954|consen 226 TQQLMRVYG 234 (532)
T ss_pred HHHHHHHHH
Confidence 555555443
No 342
>KOG0448|consensus
Probab=96.19 E-value=0.04 Score=40.10 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=41.2
Q ss_pred CCCCcc---CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQD---KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~---~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|.||.. ...+....+...+|++|||....+.-+.. ..+++....+ .+..++++.||+|...
T Consensus 212 DsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~----~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 212 DSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSE----EKPNIFILNNKWDASA 275 (749)
T ss_pred cCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhc----cCCcEEEEechhhhhc
Confidence 566743 44556678889999999999887653333 2456666643 2445788888999754
No 343
>KOG0705|consensus
Probab=96.19 E-value=0.0059 Score=43.30 Aligned_cols=95 Identities=11% Similarity=0.218 Sum_probs=62.8
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHhCCCccCCCCeEE
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKLGLTRIRDRNWYV 89 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~ 89 (113)
..|....|++||||...+..+++....+...+.........|+++++++.-..-..+ ...-...+. .....+.+
T Consensus 90 aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~---~~~krcsy 166 (749)
T KOG0705|consen 90 AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS---AQMKRCSY 166 (749)
T ss_pred hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH---HhcCccce
Confidence 457778999999999998888888776666554433345678888887653211111 111111111 12356678
Q ss_pred EeccccCCCCHHHHHHHHHhh
Q psy17510 90 QPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 90 ~~~sa~~~~~i~~~~~~l~~~ 110 (113)
|++++.+|.++..+|+.+...
T Consensus 167 ~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 167 YETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred eecchhhhhhHHHHHHHHHHH
Confidence 999999999999999877654
No 344
>KOG0467|consensus
Probab=96.10 E-value=0.015 Score=42.70 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=43.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
|+|||=.|.........=+|+.++++|+...- -..+...+++... .+..+++|+||+|
T Consensus 78 dspghvdf~sevssas~l~d~alvlvdvvegv-~~qt~~vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 78 DSPGHVDFSSEVSSASRLSDGALVLVDVVEGV-CSQTYAVLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred cCCCccchhhhhhhhhhhcCCcEEEEeecccc-chhHHHHHHHHHH----ccCceEEEEehhh
Confidence 89999999998888888899999999997531 1223444555533 4567799999999
No 345
>KOG3905|consensus
Probab=95.88 E-value=0.009 Score=39.94 Aligned_cols=60 Identities=5% Similarity=-0.044 Sum_probs=38.3
Q ss_pred CCeEEEEEeCCCCCCC----CC--HH--HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 52 DAIILIFANKQDLPDA----MK--PH--EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~----~~--~~--~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++|+++|++|+|.... .. .+ ++.+...-.+.-+-+..++.+|++...|++-+.+.|+...
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 6899999999997331 11 11 1111111112223455689999999999999998887653
No 346
>KOG0464|consensus
Probab=95.77 E-value=0.0042 Score=42.79 Aligned_cols=74 Identities=22% Similarity=0.144 Sum_probs=51.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---CCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~ 77 (113)
||||+-.|+--.+.++.--|+++.|||.+..-. ......+++.. ..++|-...+||+|...+ .....+.+++
T Consensus 108 dtpghvdf~leverclrvldgavav~dasagve-~qtltvwrqad----k~~ip~~~finkmdk~~anfe~avdsi~ekl 182 (753)
T KOG0464|consen 108 DTPGHVDFRLEVERCLRVLDGAVAVFDASAGVE-AQTLTVWRQAD----KFKIPAHCFINKMDKLAANFENAVDSIEEKL 182 (753)
T ss_pred cCCCcceEEEEHHHHHHHhcCeEEEEeccCCcc-cceeeeehhcc----ccCCchhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 899999999989999999999999999985311 11122223332 257899999999997553 2345566665
Q ss_pred CC
Q psy17510 78 GL 79 (113)
Q Consensus 78 ~~ 79 (113)
+.
T Consensus 183 ~a 184 (753)
T KOG0464|consen 183 GA 184 (753)
T ss_pred CC
Confidence 53
No 347
>KOG0459|consensus
Probab=95.63 E-value=0.013 Score=40.15 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=57.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh---hHHH---HHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CH---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RIDE---ARQELHRIINDREMRDAIILIFANKQDLPDAM-KP--- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~---~~~~---~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~--- 70 (113)
|.|||..|-.-+-.-..+||.-++|+.+.... .|+. ......... ...-.-.++++||+|.+... +.
T Consensus 163 DApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak---t~gv~~lVv~vNKMddPtvnWs~eRy 239 (501)
T KOG0459|consen 163 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMDDPTVNWSNERY 239 (501)
T ss_pred ccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH---hhccceEEEEEEeccCCccCcchhhH
Confidence 78899888766666777899999998775311 1111 111111111 11335678999999976531 11
Q ss_pred HHHHHHhC-----CCccCCCCeEEEeccccCCCCHHHHH
Q psy17510 71 HEIQEKLG-----LTRIRDRNWYVQPSCATTADGLYEGL 104 (113)
Q Consensus 71 ~~~~~~~~-----~~~~~~~~~~~~~~sa~~~~~i~~~~ 104 (113)
++..++.. ..+.......++.+|..+|.++.+-.
T Consensus 240 ~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 240 EECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred HHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 12212111 11112245678999999999887643
No 348
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.60 E-value=0.048 Score=34.84 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=30.4
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCC-CeEEEEEeCCCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD-AIILIFANKQDLP 65 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~~ 65 (113)
..+++|.+|.|+|++- .++.-..+ +.++... -+ +++.+|.||.|-.
T Consensus 152 ~~~~vD~vivVvDpS~-~sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSY-KSLRTAER-IKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence 4568999999999984 33333322 2333222 24 7999999999953
No 349
>KOG2485|consensus
Probab=95.41 E-value=0.033 Score=36.89 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=41.0
Q ss_pred HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 12 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
++.-++..|.+|=|=|+.-|-+ .-...+..+. ..+|-++|.||+|+.+......+.+.+.
T Consensus 40 i~~~l~~~D~iiEvrDaRiPLs--srn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~ 99 (335)
T KOG2485|consen 40 IQNRLPLVDCIIEVRDARIPLS--SRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLE 99 (335)
T ss_pred HHhhcccccEEEEeeccccCCc--cccHHHHHhc-----CCCceEEEEecccccCchhhhHHHHHHH
Confidence 3456778899999999986632 2223334442 3689999999999988655555555554
No 350
>KOG2423|consensus
Probab=95.16 E-value=0.13 Score=35.50 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=47.7
Q ss_pred hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 15 YYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
.+..+|++|-|+|+.+|. +.. ..++..++. ..+.+-++.|.||+||.+.--.......++..+ ..--|..|
T Consensus 210 ViDSSDVvvqVlDARDPmGTrc---~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSkey----PTiAfHAs 281 (572)
T KOG2423|consen 210 VIDSSDVVVQVLDARDPMGTRC---KHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEY----PTIAFHAS 281 (572)
T ss_pred hhcccceeEEeeeccCCccccc---HHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhhhC----cceeeehh
Confidence 566899999999999874 222 223333322 125677899999999977433333333333211 01123444
Q ss_pred ccCCCCHHHHHHHHH
Q psy17510 94 ATTADGLYEGLTWLT 108 (113)
Q Consensus 94 a~~~~~i~~~~~~l~ 108 (113)
..+..|-..+++.|.
T Consensus 282 i~nsfGKgalI~llR 296 (572)
T KOG2423|consen 282 INNSFGKGALIQLLR 296 (572)
T ss_pred hcCccchhHHHHHHH
Confidence 455556555554443
No 351
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.13 E-value=0.17 Score=32.98 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=44.0
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
..+.++|.+|+|.-++ +..+.+....++.+.. .++|..+|+||.+.... ...++++..+..
T Consensus 181 ~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~----f~ip~~iViNr~~~g~s-~ie~~~~e~gi~ 241 (284)
T COG1149 181 ASLKGADLAILVTEPT-PFGLHDLKRALELVEH----FGIPTGIVINRYNLGDS-EIEEYCEEEGIP 241 (284)
T ss_pred HhhccCCEEEEEecCC-ccchhHHHHHHHHHHH----hCCceEEEEecCCCCch-HHHHHHHHcCCC
Confidence 3677899999999877 4567777666666643 58999999999965433 466666666544
No 352
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.89 E-value=0.25 Score=27.35 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=35.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
|+|+... ......+..+|.++++++++ ..++.....+++.+.+........+.+++|+
T Consensus 49 Dtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 49 DLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred eCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6666533 23344678899999999876 4466666666666544321113466777775
No 353
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.74 E-value=0.22 Score=28.97 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=38.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|+|+. ........+..+|.++++.+++ ..+.......++.+.+. ....++.++.|+.+.
T Consensus 51 D~p~~--~~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 51 DTGAG--ISDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred ECCCC--CCHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence 56653 2333455788999999999886 34555555555555332 134577899999974
No 354
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=94.62 E-value=0.6 Score=31.83 Aligned_cols=72 Identities=18% Similarity=0.370 Sum_probs=54.1
Q ss_pred hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCcc
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI 82 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 82 (113)
......++..+|-+++|++.+ -.++....+++..+.+.+ ....+..++.||...+...+.+++.+.++....
T Consensus 230 ~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r-~~~~~p~lv~n~~~~~~~~~~~dl~~~~~i~~~ 301 (366)
T COG4963 230 TDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLR-PNDPKPILVLNRVGVPKRPEPSDLEEILGIESL 301 (366)
T ss_pred chHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhC-CCCCCceEEeeecCCCCCCCHHHHHHHhCCchh
Confidence 345567899999999999887 347777888888886653 356778899999997665566778777765543
No 355
>KOG0447|consensus
Probab=94.56 E-value=0.55 Score=34.04 Aligned_cols=71 Identities=14% Similarity=0.280 Sum_probs=43.7
Q ss_pred hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhCCCcc
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRI 82 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~ 82 (113)
..+..+|+.+.+++|+|+--.. .+.....+..+.......+...++|.+|.|+.+. .++..+.+.+.-..+
T Consensus 439 ~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLF 511 (980)
T KOG0447|consen 439 FSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLF 511 (980)
T ss_pred HHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCcc
Confidence 4567889999999999994322 2222222223322223467889999999999654 345556555543333
No 356
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=94.46 E-value=0.36 Score=32.22 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=34.6
Q ss_pred CCCCccCchhhHH-------hhh--cCCcEEEEEEECCCh--hhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWR-------HYY--TGTQGLIFVVDCADR--DRI-DEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~-------~~~--~~~~~vi~v~d~~~~--~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||........+ .++ ...|+++||...+.. ... ....+.+....... --.+.+++.|+.|..
T Consensus 92 DTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 92 DTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFS 166 (313)
T ss_pred ECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccC
Confidence 8999876533221 122 158999999655422 111 22233333333211 124789999999965
No 357
>KOG2486|consensus
Probab=94.36 E-value=0.013 Score=38.32 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=50.9
Q ss_pred CchhhHHhhhcCCc---EEEEEEECCCh--hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC------HHHHHH
Q psy17510 7 KIRPLWRHYYTGTQ---GLIFVVDCADR--DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK------PHEIQE 75 (113)
Q Consensus 7 ~~~~~~~~~~~~~~---~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~~~ 75 (113)
.+.++...|+..-+ -+++.+|.+-+ ..-....+|+.+ .++|+.+|.||+|...... ...+..
T Consensus 205 d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~ 277 (320)
T KOG2486|consen 205 DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKI 277 (320)
T ss_pred hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-------cCCCeEEeeehhhhhhhccccccCcccccee
Confidence 44555566655443 34455566542 222333334333 4799999999999754322 000100
Q ss_pred Hh-CCC-ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 76 KL-GLT-RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 76 ~~-~~~-~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
-+ .+. .......|++.+|+.++.|++.++-.+.+
T Consensus 278 ~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 278 NFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 00 000 00112345778999999999887655543
No 358
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.29 E-value=0.14 Score=30.51 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCcEEEEEEECCChhhHHHHHH-HHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
..+.+++++|+.....+-.... +..++ .. .. +++.||+|+
T Consensus 118 ~~d~vv~vvDa~~~~~~~~~~~~~~~Qi-~~-----ad-~ivlnk~dl 158 (158)
T cd03112 118 LLDGVITLVDAKHANQHLDQQTEAQSQI-AF-----AD-RILLNKTDL 158 (158)
T ss_pred eeccEEEEEEhhHhHHHhhccHHHHHHH-HH-----CC-EEEEecccC
Confidence 4789999999865332211122 23333 22 12 679999985
No 359
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=93.74 E-value=0.055 Score=38.01 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=36.4
Q ss_pred CCeEEEEEeCCCCCCC----CC--HH--HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 52 DAIILIFANKQDLPDA----MK--PH--EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~----~~--~~--~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++|++||++|+|.... .. .. ++...+--.+.-..+..++.||++...+++.++..|...+
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 4799999999996321 11 01 1222111111112455688899999999988887776543
No 360
>KOG0410|consensus
Probab=93.62 E-value=0.14 Score=34.41 Aligned_cols=81 Identities=21% Similarity=0.163 Sum_probs=48.7
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe----EEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEE
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI----ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 90 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (113)
....+|.++=|.|.+.|.........+..+.+. ..+..| ++=|-||+|..+.....+ ... .+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~E-------~n~------~v 319 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEEE-------KNL------DV 319 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCccc-------cCC------cc
Confidence 456899999999999886554444444433322 112233 344677777644222110 110 34
Q ss_pred eccccCCCCHHHHHHHHHh
Q psy17510 91 PSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 91 ~~sa~~~~~i~~~~~~l~~ 109 (113)
.+||++|.|.+++.+.+-.
T Consensus 320 ~isaltgdgl~el~~a~~~ 338 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEET 338 (410)
T ss_pred ccccccCccHHHHHHHHHH
Confidence 7899999999998886643
No 361
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=93.60 E-value=0.4 Score=31.22 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=29.6
Q ss_pred CCcEEEEEEECCC-----hh--hHHHH----HHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCAD-----RD--RIDEA----RQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~-----~~--~~~~~----~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
.-+|||+++|+.+ .. .+... ..-+.++.+ ......||.+++||+|+.+
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~-~lg~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQR-TLGVRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHH-HhCCCCCeEeeeECCCccc
Confidence 3599999999863 11 11221 223333332 2235789999999999865
No 362
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=93.29 E-value=0.54 Score=31.58 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=37.2
Q ss_pred CcEEEEEEECCChhh-HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 19 TQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
-|+++-|+|+..-.. .......+...... .+ ++++||+|+.++...+.+...... -++..+++.++.
T Consensus 117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv~~~~l~~l~~~l~~---lnp~A~i~~~~~ 184 (323)
T COG0523 117 LDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLVDAEELEALEARLRK---LNPRARIIETSY 184 (323)
T ss_pred eceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCCCHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence 478999999986432 22233444443332 22 899999999775433332222221 124456777765
No 363
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.09 E-value=0.79 Score=24.95 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=13.1
Q ss_pred hHHhhhcCCcEEEEEEECCCh
Q psy17510 11 LWRHYYTGTQGLIFVVDCADR 31 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d~~~~ 31 (113)
.++.-++.||+||++.|..+.
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH 61 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSH 61 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcCh
Confidence 345566666777777766654
No 364
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=92.94 E-value=1.2 Score=26.56 Aligned_cols=60 Identities=7% Similarity=-0.071 Sum_probs=38.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|+|+.... .....+..+|.++++++++. .++.....+++.+... ......++.|+.+...
T Consensus 69 D~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 69 DSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred ECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 67765333 23345678999999998763 4555555555555431 2345778999998654
No 365
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.65 E-value=0.44 Score=28.13 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=28.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
||+|.. ... ...+..||.++++..+.-. +....++.-. ...-=++++||+|
T Consensus 98 DtaG~~--~~~-~~~~~~Ad~~ivv~tpe~~----D~y~~~k~~~-----~~~~~~~~~~k~~ 148 (148)
T cd03114 98 ETVGVG--QSE-VDIASMADTTVVVMAPGAG----DDIQAIKAGI-----MEIADIVVVNKAD 148 (148)
T ss_pred ECCccC--hhh-hhHHHhCCEEEEEECCCch----hHHHHhhhhH-----hhhcCEEEEeCCC
Confidence 677753 222 3477889988888877622 2222222211 1122378899987
No 366
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.44 E-value=2 Score=28.07 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=38.8
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCeEEEeccccC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~ 96 (113)
.+|.+++|+|++.. .+.. .....+.+. . -+.-++.||.|...... .-.+....+ .|+..++ +
T Consensus 190 ~~~~~~LVl~a~~~--~~~~-~~~~~f~~~---~-~~~g~IlTKlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~ 252 (272)
T TIGR00064 190 APDEVLLVLDATTG--QNAL-EQAKVFNEA---V-GLTGIILTKLDGTAKGGIILSIAYELK--------LPIKFIG--V 252 (272)
T ss_pred CCceEEEEEECCCC--HHHH-HHHHHHHhh---C-CCCEEEEEccCCCCCccHHHHHHHHHC--------cCEEEEe--C
Confidence 38999999999743 2222 222333221 1 24578999999744322 222333333 3565666 7
Q ss_pred CCCHHHHH
Q psy17510 97 ADGLYEGL 104 (113)
Q Consensus 97 ~~~i~~~~ 104 (113)
|++++++.
T Consensus 253 Gq~~~dl~ 260 (272)
T TIGR00064 253 GEKIDDLA 260 (272)
T ss_pred CCChHhCc
Confidence 78776653
No 367
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=92.25 E-value=0.93 Score=29.26 Aligned_cols=64 Identities=6% Similarity=-0.046 Sum_probs=34.7
Q ss_pred CCCCccCchh----------hHHhhhc--CCcEEEEEEECCChh-hHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRP----------LWRHYYT--GTQGLIFVVDCADRD-RID--EARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~----------~~~~~~~--~~~~vi~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||...... ....|++ ..|++++|...+... ... ...+.+....... --.++++|.||+|..
T Consensus 85 DTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~ 162 (249)
T cd01853 85 DTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASS 162 (249)
T ss_pred ECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccC
Confidence 8899765521 1223443 568888887665322 222 2233334332211 124799999999974
Q ss_pred C
Q psy17510 66 D 66 (113)
Q Consensus 66 ~ 66 (113)
.
T Consensus 163 ~ 163 (249)
T cd01853 163 P 163 (249)
T ss_pred C
Confidence 3
No 368
>KOG3887|consensus
Probab=91.47 E-value=2.7 Score=27.47 Aligned_cols=106 Identities=18% Similarity=0.282 Sum_probs=56.6
Q ss_pred CCCCccCch-h--hHHhhhcCCcEEEEEEECCChhhHHHHHHH---HHHHHcCcCCCCCeEEEEEeCCCCCCC-CC---H
Q psy17510 1 DVGGQDKIR-P--LWRHYYTGTQGLIFVVDCADRDRIDEARQE---LHRIINDREMRDAIILIFANKQDLPDA-MK---P 70 (113)
Q Consensus 1 D~~G~~~~~-~--~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~---~ 70 (113)
|.|||-.+- . -.+..++++-++|||+|.-+. -.+...++ +....+. -+++.+=+.+.|.|-... .. .
T Consensus 81 dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykv--Np~in~EVfiHKvDGLsdd~kietq 157 (347)
T KOG3887|consen 81 DFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKV--NPNINFEVFIHKVDGLSDDFKIETQ 157 (347)
T ss_pred ecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeec--CCCceEEEEEEeccCCchhhhhhhH
Confidence 567875442 2 235578899999999998643 22222222 2222222 257788889999995432 11 1
Q ss_pred HHHHHH----hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 71 HEIQEK----LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 71 ~~~~~~----~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.++.+. +.......-.+.++.+|.. ...|.+.|..+++.
T Consensus 158 rdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQk 200 (347)
T KOG3887|consen 158 RDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQK 200 (347)
T ss_pred HHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHH
Confidence 122221 1111122233456677654 45667776666554
No 369
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=91.42 E-value=0.73 Score=28.80 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=32.4
Q ss_pred hhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 15 YYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
...+.|++++|+..... .......+++..+..... -.-++++.|..|........
T Consensus 80 ~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~ 135 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLE 135 (212)
T ss_dssp TTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHH
T ss_pred ccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHH
Confidence 34578999999998742 123333456666654321 23578888888865544433
No 370
>KOG0469|consensus
Probab=90.74 E-value=0.37 Score=34.50 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=41.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|.|||-.|.+-.-..+.-.|+.++|+|+-+.-..+ +...+.+.... .+.-+++.||.|.
T Consensus 104 DSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 104 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred cCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHHh----hccceEEeehhhH
Confidence 78999999988877888899999999997642211 23344555432 3444778999993
No 371
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=89.15 E-value=2.5 Score=26.67 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=37.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||+. ........+..+|.+++++.++ ..++......+..+.+. .....++-++.|+.+...
T Consensus 121 D~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 121 DVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAG-SGPRIGPHFLINQFDPAR 182 (246)
T ss_pred ECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhc-ccccccceEEeeccCcch
Confidence 56663 3445566778899999999875 33444444333333221 113456779999998643
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.44 E-value=5.8 Score=26.68 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=37.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCeEEEeccccC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~ 96 (113)
..+.+++|+|++.. .+...+ ....... --+.-++.||.|...... .-.+.... +.|+..++ +
T Consensus 232 ~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIlTKlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~ 294 (318)
T PRK10416 232 APHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIILTKLDGTAKGGVVFAIADEL--------GIPIKFIG--V 294 (318)
T ss_pred CCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEEECCCCCCCccHHHHHHHHH--------CCCEEEEe--C
Confidence 46788999999853 222222 2222111 124579999999543221 22233332 33566776 7
Q ss_pred CCCHHHHH
Q psy17510 97 ADGLYEGL 104 (113)
Q Consensus 97 ~~~i~~~~ 104 (113)
|++++++.
T Consensus 295 Gq~~~Dl~ 302 (318)
T PRK10416 295 GEGIDDLQ 302 (318)
T ss_pred CCChhhCc
Confidence 78876653
No 373
>PRK14974 cell division protein FtsY; Provisional
Probab=88.21 E-value=6.2 Score=26.79 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=45.8
Q ss_pred CCCCccCch-hhHHh---h--hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHH
Q psy17510 1 DVGGQDKIR-PLWRH---Y--YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEI 73 (113)
Q Consensus 1 D~~G~~~~~-~~~~~---~--~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~ 73 (113)
||+|..... .++.. . ....|.+++|+|++... +.......+.+. . .+--++.||.|...... .-.+
T Consensus 229 DTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~---~-~~~giIlTKlD~~~~~G~~ls~ 301 (336)
T PRK14974 229 DTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA---V-GIDGVILTKVDADAKGGAALSI 301 (336)
T ss_pred ECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc---C-CCCEEEEeeecCCCCccHHHHH
Confidence 788876432 22211 1 23578889999886532 222222222211 1 23478899999754322 1122
Q ss_pred HHHhCCCccCCCCeEEEeccccCCCCHHHHHH
Q psy17510 74 QEKLGLTRIRDRNWYVQPSCATTADGLYEGLT 105 (113)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 105 (113)
.... +.|+..++ +|++++++..
T Consensus 302 ~~~~--------~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 302 AYVI--------GKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred HHHH--------CcCEEEEe--CCCChhhccc
Confidence 2222 23566666 7888877643
No 374
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=87.84 E-value=3.4 Score=28.50 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=41.7
Q ss_pred hcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCC---------CCCCCHH----HHHHHhCCCc
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDL---------PDAMKPH----EIQEKLGLTR 81 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~---------~~~~~~~----~~~~~~~~~~ 81 (113)
+...|.+|++.+. ++.... .+...+.+ .++|+.+|-+|+|. +...+.+ ++.+... ..
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~-~~ 182 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL-EN 182 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH-HH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH-HH
Confidence 5567988887753 244443 34445543 58999999999994 1112222 2221111 11
Q ss_pred cCC---CCeEEEeccccCC--CCHHHHHHHHHhhc
Q psy17510 82 IRD---RNWYVQPSCATTA--DGLYEGLTWLTSNH 111 (113)
Q Consensus 82 ~~~---~~~~~~~~sa~~~--~~i~~~~~~l~~~~ 111 (113)
+.. ..-++|-+|+.+- .++..+.+.|.+.+
T Consensus 183 L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 183 LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 111 2336788887654 35777777777654
No 375
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=87.74 E-value=0.96 Score=35.55 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCcEEEEEEECCCh-----hhH----HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADR-----DRI----DEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~-----~~~----~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
.-+|||+++|+.+- ... .....-+.++.+. .....||.++.||+|+..
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 46999999998741 111 1223344444332 235789999999999864
No 376
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=87.52 E-value=1.3 Score=29.09 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=28.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
+.|+++|+++++...--......++.+. ...++|.|+.|.|...
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred CcceEEEEEcCCCccchHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 5699999999875321122235566663 4589999999999754
No 377
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=86.56 E-value=3.5 Score=25.67 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=27.8
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLP 65 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~ 65 (113)
.||.+++++.++ ..++......++.+.......+. ...++.|+.+..
T Consensus 141 ~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 141 KADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 789999999775 34554444444444332211233 346899999853
No 378
>CHL00175 minD septum-site determining protein; Validated
Probab=85.76 E-value=5.2 Score=26.01 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=35.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|||+.- .......+..+|.+++|++++ ..++......++.+.+. ....+-+++|+.+-
T Consensus 133 Dtpp~~--~~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~---~~~~~~lvvN~~~~ 190 (281)
T CHL00175 133 DCPAGI--DVGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEAN---GIYNVKLLVNRVRP 190 (281)
T ss_pred eCCCCC--CHHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHc---CCCceEEEEeccCh
Confidence 566543 223334556789999988776 44566665555555432 12345678899874
No 379
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=85.16 E-value=1.4 Score=26.69 Aligned_cols=44 Identities=30% Similarity=0.359 Sum_probs=27.3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
.-+.+|.|+|+.+..........+...... .+ ++++||+|+.+.
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---AD---vIvlnK~D~~~~ 156 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAF---AD---VIVLNKIDLVSD 156 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchh---cC---EEEEeccccCCh
Confidence 458899999997654344444444444433 22 789999998653
No 380
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=84.40 E-value=6.8 Score=24.88 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=36.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|+|+.-. ......+..+|.+++++.++ ..++......++.+... ...++.+++|+.+.
T Consensus 118 D~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~iviN~~~~ 175 (261)
T TIGR01968 118 DCPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAK---GIEKIHLIVNRLRP 175 (261)
T ss_pred eCCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHc---CCCceEEEEeCcCc
Confidence 5665432 22334567899999998776 44566665555555432 22367788999874
No 381
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=84.00 E-value=2.9 Score=25.23 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=35.7
Q ss_pred HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
....+..+|.+|++++++. .+......+++.+..... .-..+.++.||.+..+
T Consensus 110 ~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 110 VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGK-KLKIIGVVINRVDPGN 162 (195)
T ss_dssp HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCC
T ss_pred HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCc
Confidence 4557779999999999874 456666666666643210 1236688999998653
No 382
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=83.94 E-value=4.5 Score=26.11 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=27.0
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDL 64 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~ 64 (113)
+..||.+++++.++ ..++......++.+.+.....+.++ .++.|+.+.
T Consensus 136 l~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 136 LNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred hhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 56799999988765 3344444443333321111134543 478899984
No 383
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=83.87 E-value=3.9 Score=28.73 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCCccCchh-hHHh---h--hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRP-LWRH---Y--YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~-~~~~---~--~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||...... +... + ....+-+++|+|++....- ....+.+.+. --+--+|.||.|..
T Consensus 189 DTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 189 DTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred ECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc----cCCcEEEEECccCC
Confidence 8999755432 2221 1 2246789999998743221 2222223211 12557899999964
No 384
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=82.93 E-value=6.7 Score=25.03 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--cCCCCCeEEEEEeCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND--REMRDAIILIFANKQD 63 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D 63 (113)
||||... ......+..||.+|..+.++ +..+......+..+.+. ....+.|..++.|.++
T Consensus 90 D~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 90 DTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred eCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 6777653 44455677899999888775 33444444443333221 1124678889999986
No 385
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=82.59 E-value=7.1 Score=22.42 Aligned_cols=30 Identities=13% Similarity=-0.047 Sum_probs=21.8
Q ss_pred cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 82 IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 82 ~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+...++.+..+|+-++.++.+..+.....+
T Consensus 91 i~~eRv~~~~~~~~~~~~fa~~~~~f~~~i 120 (124)
T PF02662_consen 91 IEPERVRLYWISAPEGKRFAEIVNEFTERI 120 (124)
T ss_pred CChhHeEEEEeCcccHHHHHHHHHHHHHHH
Confidence 345677888899888888777777666544
No 386
>KOG1486|consensus
Probab=81.92 E-value=6.4 Score=26.01 Aligned_cols=51 Identities=14% Similarity=-0.038 Sum_probs=35.5
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 52 DAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
-++++.|-||+|- .+.+++...-.++. -+.+|+...-|++.+++.+-.++.
T Consensus 238 Y~~ClYvYnKID~---vs~eevdrlAr~Pn-------svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 238 YIKCLYVYNKIDQ---VSIEEVDRLARQPN-------SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEEeeccce---ecHHHHHHHhcCCC-------cEEEEeccccCHHHHHHHHHHHhc
Confidence 4789999999995 55777766544432 225566677788888887766554
No 387
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=81.86 E-value=4.1 Score=27.34 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=23.7
Q ss_pred CcEEEEEEECCChhhHHHHHHHH-HHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 19 TQGLIFVVDCADRDRIDEARQEL-HRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
-++++.|+|+.+....-...... .++ .. .+ ++++||+|+.+
T Consensus 123 l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~---AD---~IvlnK~Dl~~ 164 (318)
T PRK11537 123 LDGVIALVDAVHADEQMNQFTIAQSQV-GY---AD---RILLTKTDVAG 164 (318)
T ss_pred eccEEEEEEhhhhhhhccccHHHHHHH-Hh---CC---EEEEeccccCC
Confidence 38899999997532211112222 223 21 22 78999999865
No 388
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=81.62 E-value=11 Score=23.84 Aligned_cols=58 Identities=14% Similarity=0.018 Sum_probs=33.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~ 65 (113)
|+|+.... .....+..||.++++++++. .++.......+.... .+. ...++.|+.+..
T Consensus 115 D~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~~----~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 115 DAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAEK----LGTAILGVVLNRVTRD 173 (251)
T ss_pred eCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHHh----cCCceEEEEEECCCch
Confidence 56654332 23334567999999998763 345544443333322 233 457999999853
No 389
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=81.12 E-value=9.3 Score=22.76 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=31.0
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
..+|.++++..+. +.+.....++++.+.+. .....-++.|+.+.
T Consensus 90 ~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~ 133 (169)
T cd02037 90 LPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYF 133 (169)
T ss_pred cCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcc
Confidence 5789999999776 45677777777777653 22344678999874
No 390
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=80.94 E-value=14 Score=27.00 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 35 DEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
.+..+.++.+.. -++|+++++||.|...
T Consensus 359 ~NL~RHIenvr~----FGvPvVVAINKFd~DT 386 (557)
T PRK13505 359 ANLERHIENIRK----FGVPVVVAINKFVTDT 386 (557)
T ss_pred HHHHHHHHHHHH----cCCCEEEEEeCCCCCC
Confidence 334445555543 6899999999999754
No 391
>PHA02518 ParA-like protein; Provisional
Probab=80.68 E-value=11 Score=23.15 Aligned_cols=59 Identities=12% Similarity=-0.093 Sum_probs=34.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH---HHHHHHHHcCcCCCCCe-EEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA---RQELHRIINDREMRDAI-ILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~p-~ilv~nK~D~ 64 (113)
||||. ........+..+|.+|+++.++. .++... ..++...... ..+.| ..++.|+.+.
T Consensus 83 D~p~~--~~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 83 DGAPQ--DSELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQEV--TDGLPKFAFIISRAIK 145 (211)
T ss_pred eCCCC--ccHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHhh--CCCCceEEEEEeccCC
Confidence 77876 34556678889999999998873 233333 3344443211 12344 4566777654
No 392
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=80.51 E-value=10 Score=25.08 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=27.3
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 64 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~ 64 (113)
+..||.+|+++.++ +.++......++.+.......+.+ .-++.|+.+.
T Consensus 136 l~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 136 LNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred hhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 45689999988765 445555544443332211113343 4488899874
No 393
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=79.26 E-value=7.6 Score=25.07 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=27.1
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQD 63 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 63 (113)
+..||.+|+++.++ ..++......++.+.+.....+.++ -++.|+.+
T Consensus 138 l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 138 LQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred hhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 55789999988664 3455555444443322111235554 47889976
No 394
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=78.97 E-value=3.1 Score=28.60 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=14.8
Q ss_pred CCCCeEEEEEeCCCCCCC
Q psy17510 50 MRDAIILIFANKQDLPDA 67 (113)
Q Consensus 50 ~~~~p~ilv~nK~D~~~~ 67 (113)
...+|+++++||.|....
T Consensus 204 lt~KP~lyvaN~~e~~~~ 221 (372)
T COG0012 204 LTAKPMLYVANVSEDDLA 221 (372)
T ss_pred hhcCCeEEEEECCccccc
Confidence 357999999999997653
No 395
>PTZ00258 GTP-binding protein; Provisional
Probab=77.92 E-value=5.6 Score=27.62 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=19.4
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECC
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCA 29 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~ 29 (113)
||||.-+ ........++.+|++++|+|+.
T Consensus 91 DtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 91 DIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 7888532 2222333567899999999984
No 396
>PRK10818 cell division inhibitor MinD; Provisional
Probab=77.71 E-value=13 Score=23.96 Aligned_cols=62 Identities=5% Similarity=-0.082 Sum_probs=36.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc-----CCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-----EMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~ilv~nK~D~~ 65 (113)
|+|+.-... ....+..+|.++++++++ ..++.....+++.+.+.. ...+.+..++.|+.+..
T Consensus 120 D~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 120 DSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred eCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 565554332 233467899999999887 345555555555543210 01123457788988853
No 397
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=77.07 E-value=13 Score=23.88 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=35.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
|++|-... +....+..+|.||+=+-.+..+ .--....|+.+..+. ...++|..++.|++.
T Consensus 90 DleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~-~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 90 DLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKA-ERRDIPAAVLFTRVP 151 (231)
T ss_pred eCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHh-hCCCCCeeEEEecCC
Confidence 45554322 2344566899988866554321 222335566666432 236789999999986
No 398
>PRK13660 hypothetical protein; Provisional
Probab=77.04 E-value=14 Score=22.89 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=27.3
Q ss_pred chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 8 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 8 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
|+...+..+.++|++|.++|...+.+-....+..+.. ....+.|+..+
T Consensus 119 ~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A~k~---~~~~~y~i~~I 166 (182)
T PRK13660 119 FRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAAKKK---QEKEDYPLDLI 166 (182)
T ss_pred HHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHHHHh---hhccCceEEEe
Confidence 3444455678899999999876543333333222222 22246777766
No 399
>PTZ00258 GTP-binding protein; Provisional
Probab=76.24 E-value=6.9 Score=27.20 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=23.7
Q ss_pred CCCeEEEEEeCC--CC-CCCC-CHHHHHHHhCCCccCCCCeEEEeccccCC
Q psy17510 51 RDAIILIFANKQ--DL-PDAM-KPHEIQEKLGLTRIRDRNWYVQPSCATTA 97 (113)
Q Consensus 51 ~~~p~ilv~nK~--D~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 97 (113)
..+|+++++|+. |+ .... ..+.+.+..... .+.+++.+||+..
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~----~~~~~v~~sa~~E 265 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEK----GGGPIIPYSAEFE 265 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHhc----CCCeEEEeeHHHH
Confidence 568999999999 75 2211 122233222211 1346778887544
No 400
>KOG1487|consensus
Probab=76.14 E-value=6.3 Score=26.15 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=49.8
Q ss_pred hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEE
Q psy17510 11 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 90 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (113)
....|-...+.+.+-+|++.. .++..+ ..+ ..-+|++.+.||+|-.. .++..-.+... ...
T Consensus 199 il~eyR~hsAdi~Lr~DaT~D-------dLIdvV-egn-r~yVp~iyvLNkIdsIS---iEELdii~~ip-------hav 259 (358)
T KOG1487|consen 199 ILSEYRIHSADIALRFDATAD-------DLIDVV-EGN-RIYVPCIYVLNKIDSIS---IEELDIIYTIP-------HAV 259 (358)
T ss_pred HHHHhhhcchheeeecCcchh-------hhhhhh-ccC-ceeeeeeeeecccceee---eeccceeeecc-------cee
Confidence 344455566677888888742 122223 211 13589999999999533 32221111111 245
Q ss_pred eccccCCCCHHHHHHHHHhhcC
Q psy17510 91 PSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 91 ~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+||-++=+++++++.+-..+.
T Consensus 260 pISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 260 PISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred ecccccccchHHHHHHHhhcch
Confidence 8889888899999988776654
No 401
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=75.59 E-value=3 Score=27.44 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=18.9
Q ss_pred CCCCccCc-------hhhHHhhhcCCcEEEEEEECC
Q psy17510 1 DVGGQDKI-------RPLWRHYYTGTQGLIFVVDCA 29 (113)
Q Consensus 1 D~~G~~~~-------~~~~~~~~~~~~~vi~v~d~~ 29 (113)
|+||.-+- .......++.+|+++.|+|+.
T Consensus 68 D~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 68 DIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 77884321 122233467899999999874
No 402
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=75.16 E-value=17 Score=22.40 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=29.6
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
..+.+|.+|+|.++.. .+........+.+... ....+-+|.||.+..
T Consensus 147 ~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~---~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 147 IARACDASILVTDAGE-IKKRDVQKAKEQLEQT---GSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhC---CCCEEEEEEeCcccc
Confidence 4456899999998863 3445555555555332 223567889999854
No 403
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=74.87 E-value=15 Score=26.01 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCCCccCchh-hH---H--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRP-LW---R--HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~-~~---~--~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~ 66 (113)
||||+..... +. . .....++.+++|+|++.. .+..+....+.. ..+ --+|.||.|...
T Consensus 182 DTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---q~av~~a~~F~~-----~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 182 DTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---QQAKNQAKAFHE-----AVGIGGIIITKLDGTA 246 (437)
T ss_pred ECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---HHHHHHHHHHHh-----cCCCCEEEEecccCCC
Confidence 8899765432 11 1 113367899999998753 222333333321 122 357889999643
No 404
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=74.36 E-value=5.1 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=20.4
Q ss_pred CCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 85 RNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 85 ~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+++++.+|++++.|++++.+.+...
T Consensus 11 ~gy~v~~~S~~~~~g~~~l~~~l~~k 36 (161)
T PF03193_consen 11 LGYPVFFISAKTGEGIEELKELLKGK 36 (161)
T ss_dssp TTSEEEE-BTTTTTTHHHHHHHHTTS
T ss_pred cCCcEEEEeCCCCcCHHHHHHHhcCC
Confidence 45678899999999999999887653
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=73.60 E-value=17 Score=21.70 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=23.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
..+.+++|++..... +..+....+.+. .+ ..-++.||.|...
T Consensus 112 ~~~~~~lVv~~~~~~---~~~~~~~~~~~~---~~-~~~viltk~D~~~ 153 (173)
T cd03115 112 KPDEVLLVVDAMTGQ---DAVNQAKAFNEA---LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCeEEEEEECCCCh---HHHHHHHHHHhh---CC-CCEEEEECCcCCC
Confidence 478889999875432 222333333221 12 2456779998644
No 406
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=73.55 E-value=22 Score=25.45 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=43.5
Q ss_pred EEEEEEECCC----hhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccc-
Q psy17510 21 GLIFVVDCAD----RDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA- 94 (113)
Q Consensus 21 ~vi~v~d~~~----~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa- 94 (113)
++++-.|.+- ++.|... .+.+.++.. -++|++++.|-.+ +......++++.+... -+++++.+++
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~----igKPFvillNs~~-P~s~et~~L~~eL~ek----Y~vpVlpvnc~ 218 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKE----IGKPFVILLNSTK-PYSEETQELAEELEEK----YDVPVLPVNCE 218 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHH----hCCCEEEEEeCCC-CCCHHHHHHHHHHHHH----hCCcEEEeehH
Confidence 4444445442 2333333 345555543 4799999999886 2222233444433322 2345666665
Q ss_pred -cCCCCHHHHHHHHHhhc
Q psy17510 95 -TTADGLYEGLTWLTSNH 111 (113)
Q Consensus 95 -~~~~~i~~~~~~l~~~~ 111 (113)
.+...+..+++.+.-.+
T Consensus 219 ~l~~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 219 QLREEDITRILEEVLYEF 236 (492)
T ss_pred HcCHHHHHHHHHHHHhcC
Confidence 45556777777665443
No 407
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=73.37 E-value=24 Score=23.52 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=43.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+|+... ......+..||.++++++.+ ..++.....+++.+... +..+-++.|... ......+++.+.++..
T Consensus 211 D~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~----~~~~~lVv~~~~-~~~~~~~~i~~~lg~~ 282 (322)
T TIGR03815 211 DLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAAARVCPELGRR----NPDLRLVVRGPA-PAGLDPEEIAESLGLP 282 (322)
T ss_pred eCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhh----CCCeEEEEeCCC-CCCCCHHHHHHHhCCC
Confidence 5665532 33455778999999999765 44666666666666432 123344556533 2335567777777644
No 408
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=73.11 E-value=10 Score=25.81 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=13.4
Q ss_pred EEEEeCCCCCCCCCHHHHHH
Q psy17510 56 LIFANKQDLPDAMKPHEIQE 75 (113)
Q Consensus 56 ilv~nK~D~~~~~~~~~~~~ 75 (113)
+++.||+|+.+......+.+
T Consensus 177 ~IvlnK~Dl~~~~~l~~~~~ 196 (341)
T TIGR02475 177 LVILNKADLLDAAGLARVRA 196 (341)
T ss_pred EEEEeccccCCHHHHHHHHH
Confidence 88999999876433333333
No 409
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=72.56 E-value=13 Score=20.00 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=23.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELH 42 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~ 42 (113)
|+|+... ......+..+|.++++++.+ ..++.....+++
T Consensus 46 D~p~~~~--~~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 46 DTPPSLG--LLTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred eCcCCCC--HHHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 5666432 22335677889999988775 445555555544
No 410
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=72.20 E-value=20 Score=22.07 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=50.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC-CCCCHHHHHHHhCCCccCCCCeEEEeccccC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP-DAMKPHEIQEKLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 96 (113)
+-|.|+|++|.....++.....-+..+-- .-.-++-++++-|=.... ......++.+.... ..+|++.+.-.+
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~-~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~-----y~~plL~~~le~ 137 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDP-SFFLGKVCFLATNAGRESHCSVHPNEVRKLAAT-----YNSPLLFADLEN 137 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCCh-hhhccceEEEEcCCCcccccccCHHHHHHHHHH-----hCCCEEEeeccc
Confidence 56999999999988888887766665521 112466666655433321 22334444443221 233566666666
Q ss_pred CCCHHHHHHHHHhhc
Q psy17510 97 ADGLYEGLTWLTSNH 111 (113)
Q Consensus 97 ~~~i~~~~~~l~~~~ 111 (113)
.++...+-+.|.+.+
T Consensus 138 ~~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 138 EEGRTSLAQRLLRML 152 (176)
T ss_pred chHHHHHHHHHHHHH
Confidence 666665555555443
No 411
>KOG4273|consensus
Probab=71.86 E-value=4.1 Score=26.75 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=31.0
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLPD 66 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~ 66 (113)
-++++|||.+....+.....|+...-. ... -.+.++||.|..+
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdi----nsfdillcignkvdrvp 123 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDI----NSFDILLCIGNKVDRVP 123 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhcccccc----ccchhheeccccccccc
Confidence 578899999988788887788765522 222 3467899999754
No 412
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=71.63 E-value=15 Score=20.36 Aligned_cols=45 Identities=11% Similarity=-0.007 Sum_probs=27.0
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
..+.+||++|..+|...+++-. ..+ +-.... .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt-~~E-lG~A~a----lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGT-AFE-LGYAYA----LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHH-HHH-HHHHHH----TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcH-HHH-HHHHHH----CCCEEEEEEcCCcc
Confidence 3677899999999884422211 112 122211 57899999887753
No 413
>KOG3929|consensus
Probab=71.16 E-value=10 Score=25.19 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=12.5
Q ss_pred CCeEEEEEeCCCCCC
Q psy17510 52 DAIILIFANKQDLPD 66 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~ 66 (113)
.+|+++|+.|+|.-.
T Consensus 190 P~PV~IVgsKYDvFq 204 (363)
T KOG3929|consen 190 PVPVVIVGSKYDVFQ 204 (363)
T ss_pred CCceEEeccchhhhc
Confidence 579999999999643
No 414
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=70.69 E-value=16 Score=27.64 Aligned_cols=64 Identities=8% Similarity=0.023 Sum_probs=34.6
Q ss_pred CCCCccCch------hh----HHhhhc--CCcEEEEEEECCChhhHHHHHHHHH---HHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIR------PL----WRHYYT--GTQGLIFVVDCADRDRIDEARQELH---RIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~------~~----~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||..... .. ...+++ ..|++|+|..++..........+++ .+.... -=.-++|+.|..|..
T Consensus 172 DTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 172 DTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASA 249 (763)
T ss_pred ECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccC
Confidence 789976431 11 222444 4799999987753322112223333 333221 113578899999976
Q ss_pred C
Q psy17510 66 D 66 (113)
Q Consensus 66 ~ 66 (113)
+
T Consensus 250 p 250 (763)
T TIGR00993 250 P 250 (763)
T ss_pred C
Confidence 4
No 415
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=70.54 E-value=17 Score=23.38 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=27.5
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLP 65 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~ 65 (113)
+..||.+++++.++ ..++......++.+.+.....+.+ ..++.|+.+..
T Consensus 136 l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 136 LQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred hhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 55788888887654 344555444444332211113454 35788998753
No 416
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=69.45 E-value=18 Score=20.32 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=28.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
..++...+|++.. ....+....++..+... ..++|++++.++.
T Consensus 35 ~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 35 SFTDIAAVVISWD-GEEEDEAQELLDKIRER--NFGIPVFLLAERD 77 (115)
T ss_dssp CTTTEEEEEEECH-HHHHHHHHHHHHHHHHH--STT-EEEEEESCC
T ss_pred hCCCeeEEEEEcc-cccchhHHHHHHHHHHh--CCCCCEEEEecCC
Confidence 3577777777765 44445556777777554 3689999999865
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=69.07 E-value=20 Score=25.31 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=31.2
Q ss_pred CCCCccCchh-hHHh-----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRP-LWRH-----YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~-~~~~-----~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
||||...... +... ..-..+.+++|+|.... .+.......+... -+ ..=+|.||.|-
T Consensus 189 DTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~---v~-i~giIlTKlD~ 251 (428)
T TIGR00959 189 DTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNER---LG-LTGVVLTKLDG 251 (428)
T ss_pred eCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhh---CC-CCEEEEeCccC
Confidence 7899654422 2211 12357889999998643 3333444444221 11 23577999995
No 418
>KOG1249|consensus
Probab=68.28 E-value=13 Score=27.08 Aligned_cols=85 Identities=19% Similarity=-0.004 Sum_probs=47.1
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHh---CC----------CccCCC
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL---GL----------TRIRDR 85 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~----------~~~~~~ 85 (113)
--++..|.|.++... .....+..... ..-+++.+||.|+.+.....-++... .. +.....
T Consensus 111 ~~~~~~vvd~~d~p~--~i~p~~~~~v~-----~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~ 183 (572)
T KOG1249|consen 111 PALARKVVDLSDEPC--SIDPLLTNDVG-----SPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDF 183 (572)
T ss_pred ccceEEeeecccCcc--ccccchhhccc-----CCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCccc
Confidence 356677777776422 22333333322 22379999999987644322222211 10 000001
Q ss_pred -CeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 86 -NWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 86 -~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.-....++++++.|++++.-.+...
T Consensus 184 ~f~~~~~~r~ktgyg~eeLI~~lvd~ 209 (572)
T KOG1249|consen 184 DFDHVDLIRAKTGYGIEELIVMLVDI 209 (572)
T ss_pred chhhhhhhhhhhcccHHHHHHHhhhe
Confidence 1235688999999999998877653
No 419
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=67.52 E-value=2.6 Score=23.73 Aligned_cols=9 Identities=67% Similarity=0.848 Sum_probs=4.7
Q ss_pred EEeCCCCCC
Q psy17510 58 FANKQDLPD 66 (113)
Q Consensus 58 v~nK~D~~~ 66 (113)
++||+|++.
T Consensus 1 AaNK~D~~~ 9 (109)
T PF08438_consen 1 AANKADLPA 9 (109)
T ss_dssp EEE-GGG-S
T ss_pred CCccccccc
Confidence 478888643
No 420
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=67.18 E-value=24 Score=22.63 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=23.9
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQ 62 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~ 62 (113)
.+|.+++++.++ +.++.....+++.+.......+.++. ++.|+.
T Consensus 141 aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 141 KAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred cccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 589998888775 34555555444444322212345554 445653
No 421
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=65.39 E-value=22 Score=24.64 Aligned_cols=43 Identities=7% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
+.|+++|.+.++.. .+... -..++.+. ..+.++.|+.|+|...
T Consensus 133 RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 133 RVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADTLT 176 (373)
T ss_pred ceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeeccccCC
Confidence 57999999988753 33332 35556663 4578899999999755
No 422
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=63.16 E-value=10 Score=26.10 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=19.3
Q ss_pred CCCCccCc-------hhhHHhhhcCCcEEEEEEECC
Q psy17510 1 DVGGQDKI-------RPLWRHYYTGTQGLIFVVDCA 29 (113)
Q Consensus 1 D~~G~~~~-------~~~~~~~~~~~~~vi~v~d~~ 29 (113)
|+||.-+- .......++.+|++++|+|+.
T Consensus 72 D~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 72 DIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 78885321 112233567899999999985
No 423
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.50 E-value=41 Score=23.07 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=43.4
Q ss_pred CCCCccCch-hhH------HhhhcCCcE-----EEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIR-PLW------RHYYTGTQG-----LIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~-~~~------~~~~~~~~~-----vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||+|+..-. +++ ....+..+. +++++|.+-. ..++.. +.+.+... ---++.||.|-...
T Consensus 228 DTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA-k~F~eav~-------l~GiIlTKlDgtAK 299 (340)
T COG0552 228 DTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA-KIFNEAVG-------LDGIILTKLDGTAK 299 (340)
T ss_pred eCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH-HHHHHhcC-------CceEEEEecccCCC
Confidence 788865432 222 223444443 8888899864 344443 33333322 11478999994321
Q ss_pred C-CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHH
Q psy17510 68 M-KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGL 104 (113)
Q Consensus 68 ~-~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 104 (113)
. ..-.+...++. |+..+. -|++++++.
T Consensus 300 GG~il~I~~~l~~--------PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 300 GGIILSIAYELGI--------PIKFIG--VGEGYDDLR 327 (340)
T ss_pred cceeeeHHHHhCC--------CEEEEe--CCCChhhcc
Confidence 1 12234444443 455555 456666553
No 424
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.05 E-value=45 Score=24.56 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=23.6
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
...++|++.+. +..+....++.+.. ..+.-+|+||.|...
T Consensus 459 ~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 459 VTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 35567777653 24444444444432 136679999999643
No 425
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=60.25 E-value=19 Score=24.67 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=22.9
Q ss_pred HHhhhcCCcEEEEEEECCChhh-HHHHHHHHHHH
Q psy17510 12 WRHYYTGTQGLIFVVDCADRDR-IDEARQELHRI 44 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~ 44 (113)
.-....+||++++|+|+..... .+-....++..
T Consensus 134 vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~ 167 (365)
T COG1163 134 VLSVARNADLIIIVLDVFEDPHHRDIIERELEDV 167 (365)
T ss_pred eeeeeccCCEEEEEEecCCChhHHHHHHHHHHhc
Confidence 3346779999999999986544 55555555544
No 426
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=59.97 E-value=28 Score=21.65 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=28.9
Q ss_pred CCCCccCchhh----HHhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPL----WRHY--YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~----~~~~--~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||+|....... +..+ ....+-+++|.+++... ++........ +. -+ +--++.||.|-.
T Consensus 90 DT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~~~-~~---~~-~~~lIlTKlDet 153 (196)
T PF00448_consen 90 DTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALAFY-EA---FG-IDGLILTKLDET 153 (196)
T ss_dssp EE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHHHH-HH---SS-TCEEEEESTTSS
T ss_pred ecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHHHh-hc---cc-CceEEEEeecCC
Confidence 78886654321 1111 11567889999887542 2222222222 11 11 225779999964
No 427
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=59.91 E-value=39 Score=20.88 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=29.8
Q ss_pred CCccCchhhHHhhhcCCcEEEEEEECC---ChhhHHHH-HHHHHHHHcCcCCCCCeEEEEE
Q psy17510 3 GGQDKIRPLWRHYYTGTQGLIFVVDCA---DRDRIDEA-RQELHRIINDREMRDAIILIFA 59 (113)
Q Consensus 3 ~G~~~~~~~~~~~~~~~~~vi~v~d~~---~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~ 59 (113)
+|.-+.......++...++=++++|+. ++..+... ..++..+... .+.+|++++-
T Consensus 42 sG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~--hP~tPIllv~ 100 (178)
T PF14606_consen 42 SGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREA--HPDTPILLVS 100 (178)
T ss_dssp TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE
T ss_pred cCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEe
Confidence 566666666666777666666777664 23344443 4556666443 4678988875
No 428
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.16 E-value=49 Score=21.83 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=31.7
Q ss_pred CCCCccCchh-hHH---hhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRP-LWR---HYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~-~~~---~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||+|...... +++ .++ ...+-+++|++++-. .++..++++.+.. -.+--++.||.|-..
T Consensus 161 Dt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 161 DTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETA 225 (270)
T ss_pred ECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCC
Confidence 7888764321 111 121 234567888887632 3444455555522 123468889999644
No 429
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=58.49 E-value=37 Score=23.94 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=33.1
Q ss_pred CCCCccCchhh----HHhhhcCC--cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCCCC
Q psy17510 1 DVGGQDKIRPL----WRHYYTGT--QGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~----~~~~~~~~--~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~ 65 (113)
||+|+..+..+ .+-++..+ .-+-+|++++. ..++..+.+..+.. .|+ -++.||.|-.
T Consensus 288 DTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~------~~i~~~I~TKlDET 351 (407)
T COG1419 288 DTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSL------FPIDGLIFTKLDET 351 (407)
T ss_pred eCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhcc------CCcceeEEEccccc
Confidence 78897766543 22333333 33445555543 36666777777743 232 5788999953
No 430
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=57.54 E-value=33 Score=21.76 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=23.9
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
...++|++++.-|.++....+.....+..+... ....+++.||.
T Consensus 38 ~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l---~~~v~~V~GNH 81 (232)
T cd07393 38 VVAPEDIVLIPGDISWAMKLEEAKLDLAWIDAL---PGTKVLLKGNH 81 (232)
T ss_pred cCCCCCEEEEcCCCccCCChHHHHHHHHHHHhC---CCCeEEEeCCc
Confidence 344789999999998644333333333333221 22234555554
No 431
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.47 E-value=48 Score=23.61 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=31.8
Q ss_pred CCCCccCchhh----HHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPL----WRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~----~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||+|....... ....+ ...+.+++|+|++-. ..+....++.+... -+-=++.||.|-..
T Consensus 327 DTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~-----~idglI~TKLDET~ 391 (436)
T PRK11889 327 DTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI-----HIDGIVFTKFDETA 391 (436)
T ss_pred eCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC-----CCCEEEEEcccCCC
Confidence 78887543221 11222 234678888887532 34444555555221 12368899999644
No 432
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=55.34 E-value=72 Score=22.56 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=30.7
Q ss_pred CCCCccCchh----hHHhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRP----LWRHYYT---GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~----~~~~~~~---~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||+|...... .....+. ...-+.+|++.+-. ..+..+.+..+... + +--++.||.|-..
T Consensus 306 Dt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 306 DTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred eCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 7888754431 1222333 23466777777532 34444444444211 1 2368899999643
No 433
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=54.83 E-value=51 Score=20.64 Aligned_cols=43 Identities=7% Similarity=-0.021 Sum_probs=27.5
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
++.+++|..+. ..+.......++.+... .-...-++.|+....
T Consensus 141 ~~~vllV~~p~-~~s~~~~~~~l~~l~~~---~~~~~glVlN~~~~~ 183 (217)
T cd02035 141 RTSFRLVTLPE-KLPLYETERAITELALY---GIPVDAVVVNRVLPA 183 (217)
T ss_pred ceEEEEEeCCC-ccHHHHHHHHHHHHHHC---CCCCCEEEEeCCcCc
Confidence 47888888776 44566666666666543 112346888988754
No 434
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=53.44 E-value=30 Score=17.66 Aligned_cols=18 Identities=11% Similarity=-0.057 Sum_probs=12.6
Q ss_pred HhhhcCCcEEEEEEECCC
Q psy17510 13 RHYYTGTQGLIFVVDCAD 30 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~ 30 (113)
......++.++++++...
T Consensus 53 ~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 53 LLALLAADLVIIVTTPEA 70 (99)
T ss_pred hhhhhhCCEEEEecCCch
Confidence 345567888888887764
No 435
>KOG2655|consensus
Probab=53.36 E-value=33 Score=23.81 Aligned_cols=43 Identities=5% Similarity=0.131 Sum_probs=30.0
Q ss_pred CCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
+.|+++|.+.++.. .+... ...++.+ +..+.++.|+.|.|...
T Consensus 129 RVH~cLYFI~P~gh-gL~p~Di~~Mk~l-----~~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 129 RVHCCLYFISPTGH-GLKPLDIEFMKKL-----SKKVNLIPVIAKADTLT 172 (366)
T ss_pred ceEEEEEEeCCCCC-CCcHhhHHHHHHH-----hccccccceeeccccCC
Confidence 67999999988753 22222 3445555 25688999999999755
No 436
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.11 E-value=78 Score=22.69 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=19.9
Q ss_pred CCCCccCchh-hHH-----hhhcCCcEEEEEEECCCh
Q psy17510 1 DVGGQDKIRP-LWR-----HYYTGTQGLIFVVDCADR 31 (113)
Q Consensus 1 D~~G~~~~~~-~~~-----~~~~~~~~vi~v~d~~~~ 31 (113)
||+|+..... ++. .-.-+.|=+++|+|..-.
T Consensus 189 DTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 189 DTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred eCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 7888765543 222 123467888999998754
No 437
>PRK13556 azoreductase; Provisional
Probab=52.56 E-value=55 Score=20.36 Aligned_cols=48 Identities=4% Similarity=0.056 Sum_probs=30.6
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCCCCCeEEEEEeC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REMRDAIILIFANK 61 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK 61 (113)
..+..||++|+++..=+..--...+.|+..+... ....+++++++.+-
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~ts 144 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNAR 144 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeC
Confidence 4577899999998654432233345677766543 12457888887763
No 438
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.00 E-value=45 Score=23.51 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=30.3
Q ss_pred CCCCccCchhh----HHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPL----WRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~----~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~ 66 (113)
||+|....... ...+.. ..+.+++|.+++. ...+....+..+. .. +--++.||.|-..
T Consensus 292 DTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~------~l~i~glI~TKLDET~ 356 (407)
T PRK12726 292 DTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA------EIPIDGFIITKMDETT 356 (407)
T ss_pred ECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC------cCCCCEEEEEcccCCC
Confidence 78998544321 112222 3466677776532 3444444444431 22 3368899999643
No 439
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=50.65 E-value=13 Score=19.98 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=25.3
Q ss_pred hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEE
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 59 (113)
.......+++++.+|+++...-..+ ..+...+....+ .++|++.+.
T Consensus 40 ~~~i~~~i~~s~~~i~~~S~~~~~s-~~~~~E~~~a~~----~~~~iipv~ 85 (102)
T PF13676_consen 40 REEIERAIERSDCVIVLLSPNYLKS-PWCRFELGAAWK----RGKPIIPVR 85 (102)
T ss_dssp HCCCHHCCTTEEEEEEEEEHHHHCT-HHHHHHHHHHHC----TSESEEEEE
T ss_pred HHHHHHHHHhCCEEEEEECcccccC-hHHHHHHHHHHH----CCCEEEEEE
Confidence 3334456688999999996542222 233444444433 345666555
No 440
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=50.37 E-value=48 Score=21.45 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=23.4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQ 62 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~ 62 (113)
.||.+++++.++ +.++.....+++.+.+.....+.++. ++.|+.
T Consensus 140 aAD~viip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~ 184 (275)
T TIGR01287 140 KAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSR 184 (275)
T ss_pred cccEEEEEecch-HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCC
Confidence 578888888765 44566655554433221111344543 455653
No 441
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.07 E-value=1.1e+02 Score=23.33 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=30.2
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
....+|++++|.... ..+.......++.+... .....-+|.|+.|..
T Consensus 675 l~~~~D~vl~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 675 AARLAIIMLLVTAYD-RVVVECGRADAQGISRL---NGEVTGVFLNMLDPN 721 (754)
T ss_pred hhhhCCeEEEEEEeC-ceeHHHHHHHHHHHHhc---CCceEEEEecCCChh
Confidence 344689999998764 34555666666666432 223456899999853
No 442
>PF11185 DUF2971: Protein of unknown function (DUF2971); InterPro: IPR021352 This bacterial family of proteins has no known function.
Probab=50.02 E-value=17 Score=18.63 Aligned_cols=17 Identities=35% Similarity=0.876 Sum_probs=15.5
Q ss_pred hHHhhhcCCcEEEEEEE
Q psy17510 11 LWRHYYTGTQGLIFVVD 27 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d 27 (113)
||++|-.+..|+.+.||
T Consensus 1 mW~~Y~~~~~Gv~i~f~ 17 (90)
T PF11185_consen 1 MWRHYADNHKGVCIGFD 17 (90)
T ss_pred ChHHhCCCCceEEEEEc
Confidence 68999999999999997
No 443
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=49.71 E-value=45 Score=18.50 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=27.4
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
...+......++++|-.+.-.-.....++..+.+ ..+.+++++++-
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh---CCCCeEEEEECh
Confidence 3345555558888887654211333445555544 367888888875
No 444
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=48.75 E-value=53 Score=19.72 Aligned_cols=47 Identities=6% Similarity=-0.037 Sum_probs=26.8
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
.-+..||++|++...=+..--...+.++..+.. ....++|++++.+-
T Consensus 64 ~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~-~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 64 QAIESADLLVVGSPVYRGSYTGLFKHLFDLVDP-NALIGKPVLLAATG 110 (174)
T ss_pred HHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCH-hHhCCCEEEEEEec
Confidence 356789999998754332112222344443321 23468999888774
No 445
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=48.72 E-value=58 Score=19.57 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=28.2
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
-+++|.--...-+.++++-.+|+.+.. |-...-.+++++||-
T Consensus 84 y~vYivtaamdhp~s~~dK~eWl~E~F--PFi~~qn~vfCgnKn 125 (180)
T COG4502 84 YNVYIVTAAMDHPKSCEDKGEWLKEKF--PFISYQNIVFCGNKN 125 (180)
T ss_pred heEEEEEeccCCchhHHHHHHHHHHHC--CCCChhhEEEecCCC
Confidence 345544444445778888889999883 334555688888874
No 446
>KOG2743|consensus
Probab=47.20 E-value=90 Score=21.49 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=23.8
Q ss_pred CcEEEEEEECCCh-hhHHHHH--HHH-HHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 19 TQGLIFVVDCADR-DRIDEAR--QEL-HRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 19 ~~~vi~v~d~~~~-~~~~~~~--~~~-~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
-|+++-|+|+-.- ..+++.. -++ +...|.+ .-=-++.||+|+.+...
T Consensus 178 LDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA----~AD~II~NKtDli~~e~ 228 (391)
T KOG2743|consen 178 LDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA----LADRIIMNKTDLVSEEE 228 (391)
T ss_pred eeeEEEEEehhhHHhhhcccCcccchHHHHHHHh----hhheeeeccccccCHHH
Confidence 4899999998631 1111110 011 1111110 11257899999987533
No 447
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=46.83 E-value=81 Score=20.64 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=29.9
Q ss_pred hhcCCcEEEEEEECCChh---hHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 15 YYTGTQGLIFVVDCADRD---RIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
....+|.++.+|.+.+.. .+....+.+.+... .+.|+.++-|=.
T Consensus 151 aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~----~~tpVgivrnag 197 (249)
T COG1010 151 AAAEADFVIALYNPISKRRPEQLGRAFEILREHRS----PDTPVGIVRNAG 197 (249)
T ss_pred HHhhCCEEEEEECCccccchHHHHHHHHHHHHhcC----CCCcEEEEecCC
Confidence 566789999999887644 34444555555532 578988887755
No 448
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=46.24 E-value=38 Score=20.84 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=11.5
Q ss_pred HhhhcCCcEEEEEEECCCh
Q psy17510 13 RHYYTGTQGLIFVVDCADR 31 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~ 31 (113)
+..+.++|++|.++|....
T Consensus 124 ~fMvdhsd~~iavyD~~~~ 142 (177)
T PF06908_consen 124 RFMVDHSDGLIAVYDGEPE 142 (177)
T ss_dssp HHHHHHSSEEEEE--TTT-
T ss_pred HHHHhCCCeEEEEEeCCCC
Confidence 4456778888888887643
No 449
>PRK10867 signal recognition particle protein; Provisional
Probab=46.15 E-value=83 Score=22.41 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=30.1
Q ss_pred CCCCccCch-hhHHh-----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIR-PLWRH-----YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~-~~~~~-----~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
||||..... .+... ..-..+.+++|+|.... .+..+..+.+... -+ ..-+|.||.|-
T Consensus 190 DTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~---~~-i~giIlTKlD~ 252 (433)
T PRK10867 190 DTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA---LG-LTGVILTKLDG 252 (433)
T ss_pred eCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh---CC-CCEEEEeCccC
Confidence 899965432 22211 11256788999998642 3333333333221 11 23567799995
No 450
>PRK13555 azoreductase; Provisional
Probab=45.46 E-value=76 Score=19.97 Aligned_cols=49 Identities=2% Similarity=0.013 Sum_probs=31.0
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCCCCCeEEEEEeC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REMRDAIILIFANK 61 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK 61 (113)
...+..||.+++++..=+..--...+.|+..+... ....++|++++.+.
T Consensus 84 ~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~ 144 (208)
T PRK13555 84 LNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGAR 144 (208)
T ss_pred HHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcC
Confidence 34678899999998664432233345677766542 12357888887663
No 451
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.30 E-value=1e+02 Score=21.49 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=31.7
Q ss_pred CCCCccCchhhHH---hhh---cCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCC-CeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWR---HYY---TGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRD-AIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~---~~~---~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~~~ 66 (113)
||+|......... ..+ ....-.++|++++.. ........-+......+...- -+--+|.||.|-..
T Consensus 222 DTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 222 DTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred cCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 8888764433211 112 233456888888753 333433333333321111000 12357789999543
No 452
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=43.20 E-value=66 Score=18.58 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=27.5
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHH--cCcCCCCCeEEEEEeCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRII--NDREMRDAIILIFANKQ 62 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~p~ilv~nK~ 62 (113)
.-+..||++|++...-...--.....++..+. ......++|+.++.+=-
T Consensus 66 ~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g 116 (152)
T PF03358_consen 66 DKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGG 116 (152)
T ss_dssp HHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEES
T ss_pred hceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEec
Confidence 35678999999886654322222233333332 13345788888876543
No 453
>PRK06242 flavodoxin; Provisional
Probab=42.98 E-value=59 Score=18.75 Aligned_cols=44 Identities=7% Similarity=-0.029 Sum_probs=25.8
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
+.++|++++...+-..........++..+.. ..+++++++++--
T Consensus 41 ~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~---~~~k~~~~f~t~g 84 (150)
T PRK06242 41 LSEYDLIGFGSGIYFGKFHKSLLKLIEKLPP---VSGKKAFIFSTSG 84 (150)
T ss_pred HhHCCEEEEeCchhcCCcCHHHHHHHHhhhh---hcCCeEEEEECCC
Confidence 4578888887754322223334455554422 2578998888854
No 454
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.05 E-value=42 Score=27.17 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=30.0
Q ss_pred cCCcEEEEEEECCCh----hhHH-----HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 17 TGTQGLIFVVDCADR----DRID-----EARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~----~~~~-----~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
+.-++||+.+|+.+- +... ....=+.++.+. .....|+.++.||.|+..
T Consensus 213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 345999999988641 1111 112223444332 235789999999999855
No 455
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=41.90 E-value=96 Score=20.11 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=25.8
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQD 63 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 63 (113)
.||.+++++.+. +.++......++.+.+.....+.++ -++.|+..
T Consensus 142 aad~vlIp~~~e-~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~ 187 (274)
T PRK13235 142 KAEEIYIVCSGE-MMAMYAANNICKGILKYADAGGVRLGGLICNSRK 187 (274)
T ss_pred cccEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCC
Confidence 578888888654 5566666655554432211234544 36678653
No 456
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=40.76 E-value=74 Score=18.50 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcC-cCCCCCeEEE
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILI 57 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~il 57 (113)
.-|+.||-+-++...+-.....|+..+.+. +...++|+++
T Consensus 83 q~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 457888877776666666677898888553 4445677765
No 457
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=39.66 E-value=73 Score=18.12 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=22.1
Q ss_pred hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEE
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 59 (113)
....+..+++++.+|+++...- ..-.+....+..... .++|++.|.
T Consensus 61 k~~I~~~i~~s~~~IVLig~~T-~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 61 KRKIRERIKNSSVTIVLIGPNT-AKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp HHHHHHHHHTEEEEEEE--TT-----HHHHHHHHHHTT----T---EEEEE
T ss_pred HHHHHHHHhcCCEEEEEeCCCc-ccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 4445667888999888886542 223333333444432 567776655
No 458
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=39.36 E-value=36 Score=19.74 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCC----CCC-------HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 54 IILIFANKQDLPD----AMK-------PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 54 p~ilv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
-+++++.|.+-=. ... ..++.+.++ +...++.++.+||..++.+.+.++..+..+
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elg---ie~eRv~~~wiSa~E~ekf~e~~~efv~~i 121 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELG---IEPERVRVLWISAAEGEKFAETINEFVERI 121 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhC---CCcceEEEEEEehhhHHHHHHHHHHHHHHH
Confidence 5788888886311 111 122333333 345678899999999999888887776554
No 459
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=38.76 E-value=82 Score=18.89 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=25.9
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
.-+..||++|++...=+..--...+.|+..+.. ....++|+.++.+-
T Consensus 61 ~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~-~~l~~K~v~~~~~g 107 (171)
T TIGR03567 61 AQVAQADGVVVATPVYKASYSGVLKALLDLLPQ-RALRGKVVLPIATG 107 (171)
T ss_pred HHHHHCCEEEEECCcccCCCCHHHHHHHHhCCh-hhhCCCEEEEEEcC
Confidence 356689999998754332111222334443321 22467898887764
No 460
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=38.58 E-value=81 Score=19.51 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=26.4
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
..-+..||++|++...=+. ++... +.++..+. .....++|+.++++-
T Consensus 61 ~~~i~~AD~iIi~tP~Y~~-s~pg~LKn~iD~l~-~~~l~~K~v~iiat~ 108 (191)
T PRK10569 61 TEQLAQADGLIVATPVYKA-SFSGALKTLLDLLP-ERALEHKVVLPLATG 108 (191)
T ss_pred HHHHHHCCEEEEECCccCC-CCCHHHHHHHHhCC-hhhhCCCEEEEEEec
Confidence 3456789999998754321 22222 22333221 123467899988885
No 461
>PF09005 DUF1897: Domain of unknown function (DUF1897); InterPro: IPR015096 This domain is found in Psi proteins produced by Drosophila, and in various eukaryotic hypothetical proteins. It has no known function. ; PDB: 2BN6_A 2BN5_A.
Probab=37.79 E-value=15 Score=16.53 Aligned_cols=16 Identities=38% Similarity=0.873 Sum_probs=7.8
Q ss_pred CCccCchhhHHhhhcC
Q psy17510 3 GGQDKIRPLWRHYYTG 18 (113)
Q Consensus 3 ~G~~~~~~~~~~~~~~ 18 (113)
+|+..|...|..|++.
T Consensus 6 ~gq~DYSaqW~eYYr~ 21 (38)
T PF09005_consen 6 GGQPDYSAQWAEYYRQ 21 (38)
T ss_dssp ------CCHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4677888888888764
No 462
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=37.32 E-value=1.1e+02 Score=19.55 Aligned_cols=44 Identities=9% Similarity=0.168 Sum_probs=30.1
Q ss_pred cCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 17 TGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
.++|.++.+-|..+.. ..+....+++.+.. -+.|++++---+|.
T Consensus 30 ~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~----l~~pv~~V~GNhD~ 74 (224)
T cd07388 30 TGADAIVLIGNLLPKAAKSEDYAAFFRILGE----AHLPTFYVPGPQDA 74 (224)
T ss_pred cCCCEEEECCCCCCCCCCHHHHHHHHHHHHh----cCCceEEEcCCCCh
Confidence 4789999999998764 34555555555533 24688777777773
No 463
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=36.97 E-value=47 Score=16.99 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=19.4
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHH
Q psy17510 21 GLIFVVDCADRDRIDEARQELHRII 45 (113)
Q Consensus 21 ~vi~v~d~~~~~~~~~~~~~~~~~~ 45 (113)
.++++||+++..........++...
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~L~~~g 27 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKILKSYG 27 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHHHHHTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhC
Confidence 4789999988777777777777774
No 464
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=36.91 E-value=1.3e+02 Score=20.21 Aligned_cols=67 Identities=30% Similarity=0.392 Sum_probs=37.3
Q ss_pred CccCchhhHHhhhcCCcE-EEEEEECC-ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 4 GQDKIRPLWRHYYTGTQG-LIFVVDCA-DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 4 G~~~~~~~~~~~~~~~~~-vi~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+...+.+.+..++.|.- |.+|.|.- +.+-+. .+++... ..++|+.++.+...++. .-+.++..+++
T Consensus 131 ~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~---DLleAa~----kR~VpVYiLLD~~~~~~---Fl~Mc~~~~v~ 199 (284)
T PF07894_consen 131 GQPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFC---DLLEAAN----KRGVPVYILLDEQNLPH---FLEMCEKLGVN 199 (284)
T ss_pred CCCCHHHHHHHHHHHhcceeEEEeeccccHHHHH---HHHHHHH----hcCCcEEEEechhcChH---HHHHHHHCCCC
Confidence 444556667777877754 44555764 322222 2223332 26799999998776532 33455555443
No 465
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=36.87 E-value=1.5e+02 Score=22.01 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc--ccCCCCHHHHHHHHHhh
Q psy17510 37 ARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC--ATTADGLYEGLTWLTSN 110 (113)
Q Consensus 37 ~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--a~~~~~i~~~~~~l~~~ 110 (113)
..+.++.+.+ -+.|+++++|+..... .+|+.-.. ......++++..+. ++=|.|-.++-+.+++.
T Consensus 360 L~rHIeNik~----fGvpvVVAIN~F~tDT---~aEi~~I~--~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a 426 (557)
T PF01268_consen 360 LERHIENIKK----FGVPVVVAINRFPTDT---DAEIELIR--ELCEELGVRAAVSEHWAKGGEGAVELAEAVVEA 426 (557)
T ss_dssp HHHHHHHHHC----TT--EEEEEE--TTS----HHHHHHHH--HHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHh----cCCCeEEEecCCCCCC---HHHHHHHH--HHHHhCCCCEEEechhhcccccHHHHHHHHHHH
Confidence 3445555543 6899999999996433 23321111 11123455543433 34456655665555544
No 466
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.32 E-value=1.5e+02 Score=20.80 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=32.2
Q ss_pred CCCCccCchhh----HHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPL----WRHYYTG---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~----~~~~~~~---~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||+|......+ ...++.. ..-+++|+|++.. ..+..+.+...... -+-=++.||.|-..
T Consensus 261 DTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~ 326 (388)
T PRK12723 261 DTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT 326 (388)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence 78887543321 1223232 2257888888754 34444555555221 13368899999643
No 467
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.30 E-value=1.1e+02 Score=18.98 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=19.2
Q ss_pred HHhhhcCCcEEEEEEECCChhhHHHHHH
Q psy17510 12 WRHYYTGTQGLIFVVDCADRDRIDEARQ 39 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~ 39 (113)
-...+.++++.++++|..++.+......
T Consensus 123 nqf~le~sdg~ll~YD~ekegs~ky~~~ 150 (180)
T COG4474 123 NQFLLEKSDGALLFYDEEKEGSPKYFLQ 150 (180)
T ss_pred hhhhhccCceeEEEEcCcccCChHHHHH
Confidence 3446778888888888887666554433
No 468
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=35.54 E-value=97 Score=20.15 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=17.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHH
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRI 44 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~ 44 (113)
..||.+|+++.++ +.++......++.+
T Consensus 140 ~aAD~vlIp~~p~-~~si~~~~~ll~~i 166 (279)
T PRK13230 140 GLADDVYIVTTCD-PMAIYAANNICKGI 166 (279)
T ss_pred cccceEEEeccch-HHHHHHHHHHHHHH
Confidence 3589999988775 44555555444433
No 469
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=33.78 E-value=1e+02 Score=20.31 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=24.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEe
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 60 (113)
...-+|+++|=-++...+...+.++.+......+++-++++++
T Consensus 170 ~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D 212 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFD 212 (325)
T ss_pred CCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 3456777777666655555555555443333335666666664
No 470
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=33.63 E-value=58 Score=21.38 Aligned_cols=69 Identities=23% Similarity=0.362 Sum_probs=39.7
Q ss_pred hhhHHhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccC
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR 83 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 83 (113)
+..+..|+-+..-=|.++|+... ..+......+..+.. .+..+++|++|.- ......+.++..+..+..
T Consensus 24 npkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~----~~g~ILfVgTK~~--a~~~V~~~A~r~g~~yV~ 93 (252)
T COG0052 24 NPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAA----NGGKILFVGTKKQ--AQEPVKEFAERTGAYYVN 93 (252)
T ss_pred CCcccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHc----CCCEEEEEechHH--HHHHHHHHHHHhCCceec
Confidence 33334444444445888998654 345555666666643 4678999999953 122244555555555443
No 471
>PRK00170 azoreductase; Reviewed
Probab=33.53 E-value=1.2e+02 Score=18.57 Aligned_cols=49 Identities=4% Similarity=0.071 Sum_probs=29.2
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCCCCCeEEEEEeCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REMRDAIILIFANKQ 62 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~ 62 (113)
.-+..||++|+++..=...--.....|+..+... ....+++++++.+--
T Consensus 82 ~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g 142 (201)
T PRK00170 82 EEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRG 142 (201)
T ss_pred HHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCC
Confidence 3577899999998654322223335566665321 124678888887643
No 472
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=33.26 E-value=96 Score=17.56 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=13.2
Q ss_pred cCCcEEEEEEECCChhh
Q psy17510 17 TGTQGLIFVVDCADRDR 33 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~ 33 (113)
.++|.+++.-|..+...
T Consensus 18 ~~~D~vi~~GD~~~~~~ 34 (135)
T cd07379 18 PDGDVLIHAGDLTERGT 34 (135)
T ss_pred CCCCEEEECCCCCCCCC
Confidence 57899999999876443
No 473
>PRK13695 putative NTPase; Provisional
Probab=33.25 E-value=1.1e+02 Score=18.23 Aligned_cols=78 Identities=5% Similarity=0.056 Sum_probs=41.0
Q ss_pred hhhcCCcEEEEEEEC---CChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEE
Q psy17510 14 HYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 90 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (113)
..+.+++. +++|- .+... ....+.+..+.+ .+.|++++.+|... ..+...+. ..++..++
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~----~~~~~i~v~h~~~~------~~~~~~i~----~~~~~~i~ 154 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLD----SEKPVIATLHRRSV------HPFVQEIK----SRPGGRVY 154 (174)
T ss_pred hccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHh----CCCeEEEEECchhh------HHHHHHHh----ccCCcEEE
Confidence 34556676 57773 22211 222344555543 46899999998542 22222222 12334555
Q ss_pred eccccCCCCHHHHHHHHHhhc
Q psy17510 91 PSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 91 ~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++ +.++-+++...+...+
T Consensus 155 ~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 155 EL---TPENRDSLPFEILNRL 172 (174)
T ss_pred EE---cchhhhhHHHHHHHHH
Confidence 66 4556667777666654
No 474
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=33.22 E-value=1.5e+02 Score=19.77 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=30.8
Q ss_pred CCcEEEEEEECCChhhHHHHH---HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
.||.++++..++ ..++.... ..+..+.+. ...-.+.-++.|+.+... ..+++++..+.+
T Consensus 147 ~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~-~~~v~i~GVV~N~~~~~~--~~~~~~~~~~i~ 208 (296)
T TIGR02016 147 LAEEVIVIGSND-RQSLYVANNICNAVEYFRKL-GGRVGLLGLVVNRDDGSG--EAQAFAREVGIP 208 (296)
T ss_pred hCCeEEEEecch-HHHHHHHHHHHHHHHHHHHc-CCCCcceEEEEeCCCCcc--HHHHHHHHcCCC
Confidence 578888877654 33444333 333333221 001225678999997522 345566655543
No 475
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=32.80 E-value=1.2e+02 Score=19.60 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=24.9
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQ 62 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~ 62 (113)
.||.+|+++.+. +.++......++.+.+.....+.+++ ++.|+.
T Consensus 143 aad~viIp~~p~-~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 143 KAQEVYIVASGE-MMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred cCceEEEecccc-HHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 578888888764 44666665554444221111355543 788865
No 476
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=32.45 E-value=56 Score=18.54 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=10.7
Q ss_pred CCCeEEEEEeCCCC
Q psy17510 51 RDAIILIFANKQDL 64 (113)
Q Consensus 51 ~~~p~ilv~nK~D~ 64 (113)
.++|++.+++|.++
T Consensus 68 ~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 68 KGIPYVYVKKKEDL 81 (117)
T ss_pred cCCCEEEeCCHHHH
Confidence 57998888877664
No 477
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=32.40 E-value=83 Score=16.59 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=7.9
Q ss_pred CCCeEEEEEeCCC
Q psy17510 51 RDAIILIFANKQD 63 (113)
Q Consensus 51 ~~~p~ilv~nK~D 63 (113)
.+.|++++.+..|
T Consensus 70 ~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 70 PSIPIIVVTDEDD 82 (112)
T ss_dssp TTSEEEEEESSTS
T ss_pred ccccEEEecCCCC
Confidence 4567666665554
No 478
>PRK06756 flavodoxin; Provisional
Probab=32.14 E-value=1.1e+02 Score=17.76 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=27.5
Q ss_pred hhcCCcEEEEEEECCChhhHH-HHHHHHHHHHcCcCCCCCeEEEEEe
Q psy17510 15 YYTGTQGLIFVVDCADRDRID-EARQELHRIINDREMRDAIILIFAN 60 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~n 60 (113)
.+.++|++++....-....+. ....++..+... ...++|+.++++
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~-~l~~k~~~~fgt 91 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSI-DLTGKKAAVFGS 91 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcC-CCCCCEEEEEeC
Confidence 356788988887443212222 356666665332 346889999988
No 479
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=32.03 E-value=66 Score=19.82 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=27.0
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
..+.+||++|..+|..++..-..+...+-...- .++|++...+-
T Consensus 64 ~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~A----lgKPv~~~~~d 107 (172)
T COG3613 64 KLIDQADIVLANLDPFRPDPDSGTAFELGYAIA----LGKPVYAYRKD 107 (172)
T ss_pred HHHhhcCEEEEecCCCCCCCCCcchHHHHHHHH----cCCceEEEeec
Confidence 367789999999998873332333322333322 57898776653
No 480
>PRK07116 flavodoxin; Provisional
Probab=31.95 E-value=1.1e+02 Score=18.04 Aligned_cols=60 Identities=7% Similarity=-0.068 Sum_probs=33.9
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
-+...|.+++.+.+--.........|++.. ...+++++++++-..-.......++.+.++
T Consensus 73 ~l~~~D~Iiig~Pv~~~~~p~~v~~fl~~~----~l~~k~v~~f~T~g~~~~g~~~~~~~~~~~ 132 (160)
T PRK07116 73 NIAEYDVIFLGFPIWWYVAPRIINTFLESY----DFSGKTVIPFATSGGSGIGNAEKELKKSYP 132 (160)
T ss_pred hHHhCCEEEEECChhccccHHHHHHHHHhc----CCCCCEEEEEEeCCCCCcCcHHHHHHHHCC
Confidence 345689999888553222233344555443 246789999988654322233455555543
No 481
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=31.89 E-value=27 Score=18.36 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=19.3
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 51 RDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
.+..++++.|+.|.+...+...+.+..+
T Consensus 19 ~~~tVmVilN~n~~~~~ldl~ry~E~l~ 46 (78)
T PF10438_consen 19 DGKTVMVILNKNDKEQTLDLKRYAEVLG 46 (78)
T ss_dssp SSEEEEEEEE-SSS-EEEEGGGGHHHHT
T ss_pred CCCEEEEEEcCCCCCeEEcHHHHHHhhC
Confidence 5678999999999776666666666554
No 482
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=31.46 E-value=1.5e+02 Score=19.63 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=25.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQ 62 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~ 62 (113)
.||.+|+++.+. +.++.....+++.+.+.....+..+ -++.|+.
T Consensus 144 aAD~vIIPv~pe-~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~ 188 (295)
T PRK13234 144 KAQEIYIVMSGE-MMALYAANNIAKGILKYANSGGVRLGGLICNER 188 (295)
T ss_pred cCceEEEecCcc-HHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 688888888764 4566666666555543211133433 4777853
No 483
>PRK11670 antiporter inner membrane protein; Provisional
Probab=31.28 E-value=1.8e+02 Score=20.16 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=25.9
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDLP 65 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~ 65 (113)
.+|.+++|..+.. .++.+....+..+.+ .+.|+ -++.|+.+..
T Consensus 239 aad~viiV~tp~~-~s~~da~~~i~~~~~----~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 239 PVTGAVVVTTPQD-IALIDAKKGIVMFEK----VEVPVLGIVENMSMHI 282 (369)
T ss_pred cCCeEEEEecCch-hHHHHHHHHHHHHhc----cCCCeEEEEEcCCccc
Confidence 4788888886643 334444444544432 35665 4788988743
No 484
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=31.27 E-value=1.5e+02 Score=19.18 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=11.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHH
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRI 44 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~ 44 (113)
..+|++|+|+.... .+........+.+
T Consensus 234 ~~~d~vilV~~~~~-t~~~~~~~~~~~l 260 (274)
T TIGR03029 234 TRARGTLIVSRVNE-TRLHELTSLKEHL 260 (274)
T ss_pred HhCCeEEEEEECCC-CCHHHHHHHHHHH
Confidence 34555555554432 2333344444444
No 485
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=31.22 E-value=2.3e+02 Score=21.27 Aligned_cols=16 Identities=6% Similarity=-0.143 Sum_probs=13.2
Q ss_pred CCCeEEEEEeCCCCCC
Q psy17510 51 RDAIILIFANKQDLPD 66 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~ 66 (113)
-+.|+++++|+..-..
T Consensus 400 fg~pvVVaiN~F~~Dt 415 (587)
T PRK13507 400 SGINPVVCINAFYTDT 415 (587)
T ss_pred cCCCeEEEeCCCCCCC
Confidence 5899999999997533
No 486
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=31.09 E-value=1.2e+02 Score=17.84 Aligned_cols=51 Identities=4% Similarity=0.186 Sum_probs=30.5
Q ss_pred HHhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 12 WRHYYTGTQGLIFVVDCAD----RDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
...+++.+..-++++|+-. ...++...+++..+.......+.-+++++++-
T Consensus 67 i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~~~~~lIl~~~~~ 121 (136)
T PF05763_consen 67 IVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALLNNGTLILVVDPE 121 (136)
T ss_pred HHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeeccCCEEEEEEChh
Confidence 3446666444477778654 23466667777766655445566677776553
No 487
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=30.34 E-value=71 Score=22.25 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=16.3
Q ss_pred hhhHHhhhcCCcEEEEEEECC
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCA 29 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~ 29 (113)
.+..-..++.+|+++.|+++.
T Consensus 88 gn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 88 GNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred chHHHHHHHhCCEEEEEEeCC
Confidence 334455778999999999985
No 488
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=30.29 E-value=67 Score=18.34 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=23.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
.+..|++.=|++.+ .....+..+-+ ..++|++.+.+|..|
T Consensus 43 ~a~LVviA~Dv~P~----~~~~~l~~lc~---~~~vpyv~V~sk~~L 82 (116)
T COG1358 43 KAKLVVIAEDVSPE----ELVKHLPALCE---EKNVPYVYVGSKKEL 82 (116)
T ss_pred CCcEEEEecCCCHH----HHHHHHHHHHH---hcCCCEEEeCCHHHH
Confidence 36677776676532 22222333322 268999999988775
No 489
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=30.12 E-value=2e+02 Score=21.14 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=41.5
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCCCCCHH-----HHHHHhCCCccCCCCeEEE
Q psy17510 20 QGLIFVVDCADR---DRIDEARQELHRIINDREMRDA-IILIFANKQDLPDAMKPH-----EIQEKLGLTRIRDRNWYVQ 90 (113)
Q Consensus 20 ~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 90 (113)
.-+|+|=|.-+. .+ ......+..+... ... |+|+|++-+|.....+.. .....++.......++..+
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~---~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I 208 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRS---SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRI 208 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHc---CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEE
Confidence 455666566542 22 3334455555443 344 999999977643321111 0111222222233445556
Q ss_pred eccccCCCCHHHHHHHHH
Q psy17510 91 PSCATTADGLYEGLTWLT 108 (113)
Q Consensus 91 ~~sa~~~~~i~~~~~~l~ 108 (113)
........-+.+.+..++
T Consensus 209 ~FNpIa~T~mkKaL~rI~ 226 (519)
T PF03215_consen 209 KFNPIAPTFMKKALKRIL 226 (519)
T ss_pred EecCCCHHHHHHHHHHHH
Confidence 666665555555555544
No 490
>PF04317 DUF463: YcjX-like family, DUF463; InterPro: IPR007413 Some members of this family are thought to possess an ATP-binding domain towards their N terminus.
Probab=30.10 E-value=2.1e+02 Score=20.67 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=36.2
Q ss_pred HHhhhcCCcEEEEEEECCC-----hhhHHHHHHHHHHHHcC----------cC-CCCC-eEEEEEeCCCCCCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCAD-----RDRIDEARQELHRIIND----------RE-MRDA-IILIFANKQDLPDAM 68 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~-----~~~~~~~~~~~~~~~~~----------~~-~~~~-p~ilv~nK~D~~~~~ 68 (113)
.+.++.+-|-=|+++|+.. +..+.+...-+..+++. .. .+.+ .++++++|.|-....
T Consensus 249 yr~hFar~DRQIVLVD~L~aLn~G~~a~~Dm~~AL~~il~sFryG~~~~L~rLf~prIdkvlFAATKADHv~~~ 322 (443)
T PF04317_consen 249 YRDHFARFDRQIVLVDCLQALNAGPAAFEDMRQALAQILQSFRYGRSSLLRRLFSPRIDKVLFAATKADHVTPD 322 (443)
T ss_pred HHHHHhhhCceEEEEeechhhhcCHHHHHHHHHHHHHHHHhcCCCcchHHHHHhccchhhhheeechhccCCHh
Confidence 3457788899999999964 45566665544444332 00 1223 578999999965543
No 491
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=29.73 E-value=1.9e+02 Score=19.96 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=28.0
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
...++.||.||- +| .|+...+++..+.+ .++.++|++|.--
T Consensus 130 i~Ll~eADIVVT-----NP-PFSLFrEyv~~Li~----~~KkFlIIGN~Na 170 (336)
T PF13651_consen 130 IELLKEADIVVT-----NP-PFSLFREYVAQLIE----YDKKFLIIGNINA 170 (336)
T ss_pred HHHHhcCCEEEe-----CC-CcHHHHHHHHHHHH----hCCCEEEEecccc
Confidence 346778887653 32 46666677777765 4789999999853
No 492
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=29.73 E-value=1.4e+02 Score=18.47 Aligned_cols=47 Identities=6% Similarity=0.018 Sum_probs=30.2
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--------cCCCCCeEEEEEeC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND--------REMRDAIILIFANK 61 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK 61 (113)
-+..||.+|+.+..-.-..-.-...|+..+... ....++++.++.+-
T Consensus 58 ~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~ 112 (184)
T PRK04930 58 LLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITT 112 (184)
T ss_pred HHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEEC
Confidence 567899999999765433333446777776542 12457777777664
No 493
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=29.64 E-value=1.4e+02 Score=18.34 Aligned_cols=50 Identities=2% Similarity=-0.018 Sum_probs=31.2
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--------cCCCCCeEEEEEeCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND--------REMRDAIILIFANKQD 63 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~D 63 (113)
..+..||.+|+.+..-....-.-.+.|+..+... ....+++++++.+--.
T Consensus 51 ~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~ 108 (176)
T PRK00871 51 EALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGG 108 (176)
T ss_pred HHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCC
Confidence 3467899999999765433334445677776542 1235777777766543
No 494
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=29.59 E-value=1.5e+02 Score=21.00 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=4.1
Q ss_pred CCcEEEEEE
Q psy17510 18 GTQGLIFVV 26 (113)
Q Consensus 18 ~~~~vi~v~ 26 (113)
++|+||++.
T Consensus 350 ~aDGVI~~~ 358 (413)
T TIGR02260 350 EADGLLINS 358 (413)
T ss_pred CCCEEEEec
Confidence 344444443
No 495
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.50 E-value=1.1e+02 Score=16.96 Aligned_cols=41 Identities=5% Similarity=0.025 Sum_probs=23.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
+++++.+ ..+....+....++.+.+.+... .++++++.++-
T Consensus 50 ~pdvV~i--S~~~~~~~~~~~~~i~~l~~~~~-~~~~i~vGG~~ 90 (119)
T cd02067 50 DADAIGL--SGLLTTHMTLMKEVIEELKEAGL-DDIPVLVGGAI 90 (119)
T ss_pred CCCEEEE--eccccccHHHHHHHHHHHHHcCC-CCCeEEEECCC
Confidence 3454444 44445567777788888866421 25666665543
No 496
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.02 E-value=2e+02 Score=20.56 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=30.6
Q ss_pred CCCCccCchhh----HHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPL----WRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~----~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||+|....... ..... ...+-.++|++++.. .++..+++..+... -+-=++.||.|-..
T Consensus 276 DTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~-----~~~~~I~TKlDEt~ 340 (420)
T PRK14721 276 DTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH-----GIHGCIITKVDEAA 340 (420)
T ss_pred cCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeeeCCC
Confidence 78886653321 12121 123567888888743 33334444444211 13357889999543
No 497
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=28.87 E-value=1.6e+02 Score=18.84 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=28.0
Q ss_pred HHhhhcCCcEEEEEEEC---CChhhHHHHHHHHHHHHc-CcCCCCCeEEEEEe
Q psy17510 12 WRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIIN-DREMRDAIILIFAN 60 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~---~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~n 60 (113)
+..-+..+|++|++.-- +-+..+.....|+..-.. .....++|+.+++.
T Consensus 84 l~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~Kpvaivga 136 (219)
T TIGR02690 84 LRQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQV 136 (219)
T ss_pred HHHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEe
Confidence 35567789999998632 223344444445433210 01246899988764
No 498
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=28.84 E-value=1.1e+02 Score=18.72 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCAD---RDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
+..-+..+|++|++...-+ +..+.....|+..- ...++|+.++++..-.
T Consensus 61 ~~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~~~----~~~~Kpv~~~~~s~g~ 112 (184)
T COG0431 61 LREAIAAADGLIIATPEYNGSYPGALKNAIDWLSRE----ALGGKPVLLLGTSGGG 112 (184)
T ss_pred HHHHHHhCCEEEEECCccCCCCCHHHHHHHHhCCHh----HhCCCcEEEEecCCCc
Confidence 4456778999999874433 22233333332222 3468999888876653
No 499
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.40 E-value=2.3e+02 Score=20.40 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=21.0
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
.-+++|+|++.. .++........... -+-=+|.||.|-.
T Consensus 334 ~e~~LVLsAt~~--~~~~~~~~~~f~~~-----~~~glIlTKLDEt 372 (432)
T PRK12724 334 VENLLVLSSTSS--YHHTLTVLKAYESL-----NYRRILLTKLDEA 372 (432)
T ss_pred CeEEEEEeCCCC--HHHHHHHHHHhcCC-----CCCEEEEEcccCC
Confidence 467888887753 22333333333111 1335788999953
No 500
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=27.81 E-value=2e+02 Score=19.98 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=29.2
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
.|++++.-- .++++++..++..+.+ ..+|+++.+...-.
T Consensus 101 ~dGvVItHG---TDTmeeTA~~L~l~l~----~~kPVVlTGamr~s 139 (351)
T COG0252 101 VDGVVITHG---TDTMEETAFFLSLTLN----TPKPVVLTGAMRPA 139 (351)
T ss_pred CCeEEEeCC---CchHHHHHHHHHHHhc----CCCCEEEeCCCCCC
Confidence 388777542 4568888888888865 37999999987754
Done!