Query psy17510
Match_columns 113
No_of_seqs 104 out of 1561
Neff 10.6
Searched_HMMs 29240
Date Sat Aug 17 00:26:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r8s_A ADP-ribosylation factor 99.9 1.8E-24 6.2E-29 127.6 14.4 112 1-112 50-161 (164)
2 1fzq_A ADP-ribosylation factor 99.9 2.7E-24 9.3E-29 129.3 13.8 111 1-111 66-176 (181)
3 2b6h_A ADP-ribosylation factor 99.9 5.1E-24 1.7E-28 129.2 13.3 112 1-112 79-190 (192)
4 4dkx_A RAS-related protein RAB 99.9 1.9E-25 6.7E-30 137.9 5.9 105 1-111 68-174 (216)
5 1zj6_A ADP-ribosylation factor 99.9 9.9E-24 3.4E-28 127.1 13.1 112 1-112 66-177 (187)
6 1upt_A ARL1, ADP-ribosylation 99.9 9.5E-24 3.2E-28 125.2 12.7 111 1-111 57-167 (171)
7 1f6b_A SAR1; gtpases, N-termin 99.9 9.8E-24 3.3E-28 128.5 12.8 112 1-112 75-198 (198)
8 1m2o_B GTP-binding protein SAR 99.9 1.5E-23 5.1E-28 126.9 13.5 111 1-111 73-190 (190)
9 2h17_A ADP-ribosylation factor 99.9 9.8E-24 3.3E-28 126.7 12.5 111 1-111 71-181 (181)
10 1zd9_A ADP-ribosylation factor 99.9 1.5E-23 5.1E-28 126.6 12.6 112 1-112 73-184 (188)
11 1ksh_A ARF-like protein 2; sma 99.9 1.6E-23 5.3E-28 126.0 11.9 111 1-111 68-178 (186)
12 2x77_A ADP-ribosylation factor 99.9 1.2E-23 4.2E-28 126.9 11.1 111 1-111 72-182 (189)
13 2h57_A ADP-ribosylation factor 99.9 3.5E-23 1.2E-27 125.0 13.1 112 1-112 73-186 (190)
14 4bas_A ADP-ribosylation factor 99.9 7.9E-24 2.7E-28 128.4 9.5 111 1-111 69-187 (199)
15 1moz_A ARL1, ADP-ribosylation 99.9 2.9E-23 9.9E-28 124.4 11.5 111 1-111 68-178 (183)
16 3o47_A ADP-ribosylation factor 99.9 1.1E-22 3.9E-27 132.4 12.3 112 1-112 215-326 (329)
17 3lvq_E ARF-GAP with SH3 domain 99.9 2.4E-22 8.1E-27 136.7 13.5 112 1-112 372-483 (497)
18 3l82_B F-box only protein 4; T 99.9 6.6E-23 2.3E-27 124.9 9.3 110 1-112 108-222 (227)
19 3t1o_A Gliding protein MGLA; G 99.9 1.4E-21 5E-26 118.0 12.0 104 1-111 80-190 (198)
20 3q72_A GTP-binding protein RAD 99.9 1.3E-22 4.6E-27 119.8 5.6 106 1-111 55-162 (166)
21 1ek0_A Protein (GTP-binding pr 99.9 2.2E-22 7.6E-27 118.9 4.9 106 1-112 58-168 (170)
22 2hup_A RAS-related protein RAB 99.9 7.1E-21 2.4E-25 116.0 11.2 105 1-111 84-191 (201)
23 3l2o_B F-box only protein 4; s 99.9 1.8E-21 6.2E-26 123.5 7.7 110 1-112 193-307 (312)
24 4dsu_A GTPase KRAS, isoform 2B 99.9 3.4E-21 1.2E-25 115.7 8.4 107 1-111 58-164 (189)
25 3q85_A GTP-binding protein REM 99.9 5.4E-22 1.8E-26 117.5 4.7 106 1-111 57-165 (169)
26 3cbq_A GTP-binding protein REM 99.8 1.6E-21 5.5E-26 118.5 6.2 106 1-111 78-186 (195)
27 1x3s_A RAS-related protein RAB 99.8 1.1E-20 3.8E-25 114.0 9.9 106 1-111 70-176 (195)
28 3kkq_A RAS-related protein M-R 99.8 5.4E-21 1.9E-25 114.6 8.4 106 1-111 72-180 (183)
29 1c1y_A RAS-related protein RAP 99.8 7.2E-22 2.5E-26 116.5 4.5 108 1-112 57-166 (167)
30 2efe_B Small GTP-binding prote 99.8 2.9E-21 9.8E-26 115.4 7.1 106 1-112 67-174 (181)
31 3t5g_A GTP-binding protein RHE 99.8 4.3E-22 1.5E-26 119.2 3.3 106 1-111 60-167 (181)
32 1u8z_A RAS-related protein RAL 99.8 5.9E-22 2E-26 116.8 3.6 106 1-111 58-165 (168)
33 1r2q_A RAS-related protein RAB 99.8 1.8E-21 6.1E-26 115.0 5.6 106 1-112 61-168 (170)
34 2nzj_A GTP-binding protein REM 99.8 2.5E-21 8.7E-26 115.0 6.2 106 1-111 58-167 (175)
35 2a9k_A RAS-related protein RAL 99.8 1.2E-20 4.2E-25 113.0 9.2 106 1-111 72-179 (187)
36 2fn4_A P23, RAS-related protei 99.8 8.6E-22 2.9E-26 117.5 3.8 106 1-111 63-170 (181)
37 2fu5_C RAS-related protein RAB 99.8 9.9E-21 3.4E-25 113.4 8.3 105 1-111 63-169 (183)
38 2bov_A RAla, RAS-related prote 99.8 2.1E-20 7.2E-25 113.8 9.7 106 1-111 68-175 (206)
39 3bc1_A RAS-related protein RAB 99.8 1.6E-20 5.6E-25 113.0 9.1 106 1-111 76-183 (195)
40 1z0f_A RAB14, member RAS oncog 99.8 3.4E-21 1.2E-25 114.7 5.7 105 1-111 70-176 (179)
41 1z0j_A RAB-22, RAS-related pro 99.8 4.8E-21 1.7E-25 113.3 6.1 106 1-112 61-168 (170)
42 2fg5_A RAB-22B, RAS-related pr 99.8 5.2E-20 1.8E-24 111.3 10.8 106 1-112 78-185 (192)
43 3tkl_A RAS-related protein RAB 99.8 3E-21 1E-25 116.7 5.2 105 1-111 71-177 (196)
44 2a5j_A RAS-related protein RAB 99.8 1.9E-21 6.5E-26 117.5 4.3 105 1-111 76-182 (191)
45 3oes_A GTPase rhebl1; small GT 99.8 6.6E-22 2.3E-26 120.4 2.2 106 1-111 78-185 (201)
46 1kao_A RAP2A; GTP-binding prot 99.8 6.3E-22 2.2E-26 116.6 2.0 106 1-111 57-164 (167)
47 1wms_A RAB-9, RAB9, RAS-relate 99.8 4.1E-20 1.4E-24 110.0 9.9 107 1-111 62-172 (177)
48 2ew1_A RAS-related protein RAB 99.8 1.4E-21 4.9E-26 119.3 3.6 105 1-111 81-187 (201)
49 2g3y_A GTP-binding protein GEM 99.8 4.2E-21 1.4E-25 118.2 5.7 106 1-111 93-201 (211)
50 2g6b_A RAS-related protein RAB 99.8 1.9E-21 6.4E-26 116.2 4.0 105 1-111 66-172 (180)
51 1z06_A RAS-related protein RAB 99.8 2.4E-21 8.1E-26 116.9 4.2 107 1-112 75-187 (189)
52 3ihw_A Centg3; RAS, centaurin, 99.8 6.6E-20 2.2E-24 110.4 10.5 102 1-111 73-178 (184)
53 1cip_A Protein (guanine nucleo 99.8 3.5E-21 1.2E-25 126.2 5.3 111 1-111 199-342 (353)
54 2bcg_Y Protein YP2, GTP-bindin 99.8 7E-20 2.4E-24 111.7 10.7 105 1-111 63-169 (206)
55 2atx_A Small GTP binding prote 99.8 4.5E-20 1.5E-24 111.6 9.8 104 1-111 72-191 (194)
56 2f7s_A C25KG, RAS-related prot 99.8 1.7E-21 5.7E-26 119.8 3.5 106 1-111 90-197 (217)
57 1g16_A RAS-related protein SEC 99.8 1.9E-20 6.5E-25 110.7 7.9 105 1-111 58-163 (170)
58 2ce2_X GTPase HRAS; signaling 99.8 3E-20 1E-24 109.2 8.6 106 1-111 57-163 (166)
59 3dz8_A RAS-related protein RAB 99.8 1.6E-21 5.6E-26 117.8 3.0 105 1-111 78-184 (191)
60 2bme_A RAB4A, RAS-related prot 99.8 3.8E-21 1.3E-25 115.4 4.5 105 1-111 65-171 (186)
61 2yc2_C IFT27, small RAB-relate 99.8 2.9E-20 1E-24 113.2 8.4 106 1-111 79-190 (208)
62 3tw8_B RAS-related protein RAB 99.8 2.3E-21 8E-26 115.6 3.5 104 1-111 64-169 (181)
63 2gf9_A RAS-related protein RAB 99.8 4.6E-21 1.6E-25 115.6 4.5 105 1-111 77-183 (189)
64 3cpj_B GTP-binding protein YPT 99.8 3.7E-21 1.3E-25 118.9 4.0 105 1-111 68-174 (223)
65 3llu_A RAS-related GTP-binding 99.8 1.3E-20 4.6E-25 114.3 6.3 108 1-111 75-195 (196)
66 1z08_A RAS-related protein RAB 99.8 2.8E-20 9.6E-25 110.0 7.5 105 1-111 61-167 (170)
67 2oil_A CATX-8, RAS-related pro 99.8 7.2E-21 2.5E-25 115.0 4.9 105 1-111 80-186 (193)
68 1zbd_A Rabphilin-3A; G protein 99.8 7.8E-21 2.7E-25 115.7 5.1 105 1-111 63-169 (203)
69 3q3j_B RHO-related GTP-binding 99.8 1.6E-20 5.4E-25 115.6 6.5 104 1-111 81-201 (214)
70 4djt_A GTP-binding nuclear pro 99.8 8E-21 2.7E-25 116.8 5.1 105 1-111 67-173 (218)
71 2il1_A RAB12; G-protein, GDP, 99.8 3.1E-20 1E-24 112.4 7.5 106 1-111 81-188 (192)
72 3con_A GTPase NRAS; structural 99.8 6.1E-20 2.1E-24 110.6 8.5 106 1-111 75-181 (190)
73 3clv_A RAB5 protein, putative; 99.8 1.6E-19 5.6E-24 109.3 10.3 103 1-111 99-202 (208)
74 1ky3_A GTP-binding protein YPT 99.8 1E-19 3.4E-24 108.6 9.2 107 1-111 64-176 (182)
75 3reg_A RHO-like small GTPase; 99.8 4.9E-20 1.7E-24 111.5 7.9 104 1-111 77-186 (194)
76 2o52_A RAS-related protein RAB 99.8 3.8E-21 1.3E-25 117.1 2.8 105 1-111 80-186 (200)
77 2hxs_A RAB-26, RAS-related pro 99.8 4.9E-21 1.7E-25 114.1 3.3 106 1-111 62-171 (178)
78 3bwd_D RAC-like GTP-binding pr 99.8 5E-20 1.7E-24 110.1 7.6 104 1-111 62-179 (182)
79 2y8e_A RAB-protein 6, GH09086P 99.8 4.8E-21 1.6E-25 114.1 3.1 106 1-112 69-176 (179)
80 2p5s_A RAS and EF-hand domain 99.8 5.9E-20 2E-24 111.6 7.9 106 1-112 83-196 (199)
81 1z2a_A RAS-related protein RAB 99.8 4E-20 1.4E-24 109.1 7.0 104 1-111 60-165 (168)
82 3l0i_B RAS-related protein RAB 99.8 1.5E-21 5E-26 118.8 0.8 103 1-112 88-195 (199)
83 2erx_A GTP-binding protein DI- 99.8 5.9E-21 2E-25 113.0 3.0 107 1-112 57-166 (172)
84 1zcb_A G alpha I/13; GTP-bindi 99.8 2.8E-20 9.6E-25 122.3 6.4 111 1-111 207-351 (362)
85 2fh5_B SR-beta, signal recogni 99.8 4.8E-19 1.6E-23 108.6 11.5 111 1-111 60-214 (214)
86 3cph_A RAS-related protein SEC 99.8 9.4E-20 3.2E-24 111.4 8.2 105 1-111 75-180 (213)
87 1vg8_A RAS-related protein RAB 99.8 5.2E-20 1.8E-24 112.1 7.0 107 1-111 63-173 (207)
88 3gj0_A GTP-binding nuclear pro 99.8 2.3E-20 7.9E-25 115.1 5.4 104 1-111 70-173 (221)
89 2gf0_A GTP-binding protein DI- 99.8 8.6E-20 3E-24 110.5 7.7 106 1-111 62-169 (199)
90 4gzl_A RAS-related C3 botulinu 99.8 2.3E-20 7.8E-25 114.0 5.1 109 1-111 84-203 (204)
91 2gco_A H9, RHO-related GTP-bin 99.8 2.6E-19 9.1E-24 109.0 9.8 109 1-111 79-198 (201)
92 2atv_A RERG, RAS-like estrogen 99.8 8.4E-21 2.9E-25 115.1 2.9 105 1-111 82-189 (196)
93 2q3h_A RAS homolog gene family 99.8 1.1E-19 3.8E-24 110.4 7.8 104 1-111 74-193 (201)
94 2j0v_A RAC-like GTP-binding pr 99.8 1.5E-20 5E-25 115.2 3.6 104 1-111 63-178 (212)
95 2fv8_A H6, RHO-related GTP-bin 99.8 2.1E-19 7.1E-24 109.9 8.3 109 1-111 79-198 (207)
96 2iwr_A Centaurin gamma 1; ANK 99.8 7.3E-19 2.5E-23 104.8 10.4 102 1-111 60-167 (178)
97 2j1l_A RHO-related GTP-binding 99.8 1.2E-19 4.3E-24 111.5 7.2 109 1-111 88-207 (214)
98 3r7w_B Gtpase2, GTP-binding pr 99.8 2.4E-19 8.2E-24 116.1 8.7 108 1-111 52-172 (331)
99 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.2E-19 7.5E-24 107.5 8.0 109 1-111 59-178 (186)
100 3c5c_A RAS-like protein 12; GD 99.8 7.4E-21 2.5E-25 114.8 1.5 105 1-111 75-184 (187)
101 2xtz_A Guanine nucleotide-bind 99.8 1.3E-20 4.3E-25 123.6 2.5 111 1-111 189-343 (354)
102 2cjw_A GTP-binding protein GEM 99.8 6.4E-20 2.2E-24 111.2 5.1 106 1-111 62-170 (192)
103 1m7b_A RND3/RHOE small GTP-bin 99.8 2E-19 6.9E-24 108.0 6.6 105 1-111 61-181 (184)
104 3ohm_A Guanine nucleotide-bind 99.8 2.3E-19 8E-24 116.4 6.3 111 1-111 173-316 (327)
105 1azs_C GS-alpha; complex (lyas 99.8 4.6E-20 1.6E-24 122.4 2.4 111 1-111 223-383 (402)
106 1gwn_A RHO-related GTP-binding 99.8 4.5E-19 1.5E-23 108.5 6.6 105 1-111 82-202 (205)
107 2zej_A Dardarin, leucine-rich 99.8 8.5E-20 2.9E-24 109.8 3.0 109 1-111 62-176 (184)
108 3th5_A RAS-related C3 botulinu 99.6 1.8E-20 6.2E-25 114.2 0.0 109 1-111 84-203 (204)
109 4fid_A G protein alpha subunit 99.8 3.9E-19 1.3E-23 115.8 4.5 111 1-111 167-326 (340)
110 2lkc_A Translation initiation 99.8 4.5E-18 1.6E-22 101.2 8.8 105 1-111 61-169 (178)
111 3c5h_A Glucocorticoid receptor 99.7 4.8E-19 1.7E-23 111.7 3.3 107 2-112 125-254 (255)
112 1svi_A GTP-binding protein YSX 99.7 7.8E-18 2.7E-22 101.6 7.3 103 1-112 75-194 (195)
113 2wkq_A NPH1-1, RAS-related C3 99.7 4.6E-18 1.6E-22 110.0 6.3 109 1-111 209-328 (332)
114 1u0l_A Probable GTPase ENGC; p 99.7 1.1E-17 3.8E-22 107.7 5.9 96 5-110 71-170 (301)
115 2qu8_A Putative nucleolar GTP- 99.7 3.4E-17 1.2E-21 101.4 7.8 106 1-111 82-203 (228)
116 2dyk_A GTP-binding protein; GT 99.7 2.5E-17 8.6E-22 96.5 5.8 98 1-111 55-160 (161)
117 3pqc_A Probable GTP-binding pr 99.7 3.5E-17 1.2E-21 98.5 6.5 105 1-112 74-193 (195)
118 2wji_A Ferrous iron transport 99.7 1.1E-16 3.8E-21 94.6 8.3 97 1-112 56-164 (165)
119 2gj8_A MNME, tRNA modification 99.7 1.8E-17 6.2E-22 98.7 4.7 100 1-112 58-165 (172)
120 3sjy_A Translation initiation 99.7 1.6E-16 5.3E-21 105.9 8.2 106 1-111 81-190 (403)
121 3r7w_A Gtpase1, GTP-binding pr 99.7 4E-17 1.4E-21 105.4 4.8 108 1-111 58-179 (307)
122 3iev_A GTP-binding protein ERA 99.7 2.7E-16 9.3E-21 101.5 8.2 105 1-111 65-180 (308)
123 4dhe_A Probable GTP-binding pr 99.7 8.1E-17 2.8E-21 99.1 5.1 107 1-112 85-210 (223)
124 2f9l_A RAB11B, member RAS onco 99.6 1.3E-16 4.4E-21 96.9 4.7 105 1-111 60-166 (199)
125 2cxx_A Probable GTP-binding pr 99.6 3.3E-17 1.1E-21 98.4 1.1 110 1-111 50-182 (190)
126 2hjg_A GTP-binding protein ENG 99.6 4.9E-16 1.7E-20 104.4 5.8 106 1-111 229-347 (436)
127 1wf3_A GTP-binding protein; GT 99.6 3E-15 1E-19 96.4 8.2 101 1-111 61-171 (301)
128 1s0u_A EIF-2-gamma, translatio 99.6 3.6E-15 1.2E-19 99.5 8.7 106 1-111 87-196 (408)
129 3dpu_A RAB family protein; roc 99.6 3.1E-16 1.1E-20 107.7 3.5 101 1-111 104-206 (535)
130 2ywe_A GTP-binding protein LEP 99.6 1.5E-14 5.2E-19 100.3 11.8 105 1-112 79-183 (600)
131 4dcu_A GTP-binding protein ENG 99.6 1.5E-15 5.1E-20 102.6 6.6 106 1-111 249-367 (456)
132 2wjg_A FEOB, ferrous iron tran 99.6 2.8E-15 9.5E-20 89.9 6.8 96 1-111 60-167 (188)
133 3gee_A MNME, tRNA modification 99.6 4.2E-15 1.4E-19 100.9 8.2 97 1-111 287-396 (476)
134 3cb4_D GTP-binding protein LEP 99.6 1.4E-14 4.7E-19 100.6 10.6 102 1-112 77-181 (599)
135 3izy_P Translation initiation 99.6 1.5E-15 5E-20 104.2 5.6 105 1-111 58-166 (537)
136 1oix_A RAS-related protein RAB 99.6 6.5E-16 2.2E-20 93.4 3.3 106 1-111 84-190 (191)
137 3b1v_A Ferrous iron uptake tra 99.6 5.6E-15 1.9E-19 94.0 7.7 96 1-111 55-162 (272)
138 1g7s_A Translation initiation 99.6 9.6E-15 3.3E-19 101.3 9.2 103 1-111 76-216 (594)
139 1xzp_A Probable tRNA modificat 99.6 3.2E-14 1.1E-18 96.7 11.0 98 1-111 297-403 (482)
140 3iby_A Ferrous iron transport 99.6 3E-15 1E-19 94.5 5.3 95 1-110 54-164 (256)
141 3qq5_A Small GTP-binding prote 99.6 2.9E-15 1E-19 100.3 5.3 99 1-111 89-194 (423)
142 1nrj_B SR-beta, signal recogni 99.6 2.5E-16 8.4E-21 96.7 -0.3 69 1-69 61-137 (218)
143 3a1s_A Iron(II) transport prot 99.6 1.5E-14 5.2E-19 91.3 7.6 96 1-111 58-165 (258)
144 1kk1_A EIF2gamma; initiation o 99.5 6.5E-15 2.2E-19 98.3 6.0 106 1-111 89-198 (410)
145 2yv5_A YJEQ protein; hydrolase 99.5 6.2E-15 2.1E-19 95.0 5.4 101 4-110 65-166 (302)
146 3i8s_A Ferrous iron transport 99.5 1E-14 3.4E-19 92.8 6.1 96 1-111 56-167 (274)
147 3tr5_A RF-3, peptide chain rel 99.5 8.3E-14 2.8E-18 95.6 10.8 62 1-67 88-149 (528)
148 1wb1_A Translation elongation 99.5 7.2E-15 2.5E-19 99.9 5.3 104 1-111 79-187 (482)
149 2hjg_A GTP-binding protein ENG 99.5 4.1E-14 1.4E-18 95.1 8.9 98 1-111 57-163 (436)
150 2e87_A Hypothetical protein PH 99.5 3.3E-14 1.1E-18 93.4 8.1 104 1-111 220-334 (357)
151 1zo1_I IF2, translation initia 99.5 3.6E-15 1.2E-19 101.5 3.3 104 1-110 57-164 (501)
152 3geh_A MNME, tRNA modification 99.5 8.4E-14 2.9E-18 94.2 9.2 97 1-111 278-382 (462)
153 1lnz_A SPO0B-associated GTP-bi 99.5 1.5E-14 5.3E-19 94.5 5.3 106 1-112 212-329 (342)
154 2elf_A Protein translation elo 99.5 9.9E-14 3.4E-18 91.6 8.5 102 1-111 66-178 (370)
155 2c78_A Elongation factor TU-A; 99.5 3.1E-14 1.1E-18 94.9 5.8 106 1-111 81-210 (405)
156 1mky_A Probable GTP-binding pr 99.5 1.3E-13 4.4E-18 92.8 7.7 100 1-111 55-164 (439)
157 1jny_A EF-1-alpha, elongation 99.5 1.5E-13 5.3E-18 92.3 7.5 97 1-102 90-202 (435)
158 1zun_B Sulfate adenylate trans 99.5 3.9E-13 1.3E-17 90.4 9.1 99 1-103 110-214 (434)
159 3j2k_7 ERF3, eukaryotic polype 99.5 2.2E-13 7.6E-18 91.7 7.6 101 1-105 101-217 (439)
160 1d2e_A Elongation factor TU (E 99.4 8.7E-14 3E-18 92.6 5.4 106 1-111 72-193 (397)
161 3k53_A Ferrous iron transport 99.4 6E-13 2E-17 84.4 9.0 97 1-111 56-164 (271)
162 1mky_A Probable GTP-binding pr 99.4 4E-13 1.4E-17 90.4 8.4 105 1-110 234-352 (439)
163 4dcu_A GTP-binding protein ENG 99.4 4.1E-13 1.4E-17 90.7 7.8 99 1-111 77-183 (456)
164 2ged_A SR-beta, signal recogni 99.4 1.8E-13 6E-18 82.4 5.4 77 1-77 97-181 (193)
165 3p26_A Elongation factor 1 alp 99.4 3.3E-13 1.1E-17 91.8 7.0 99 1-102 117-227 (483)
166 3avx_A Elongation factor TS, e 99.4 2.7E-13 9.1E-18 99.3 5.9 106 1-111 365-484 (1289)
167 2aka_B Dynamin-1; fusion prote 99.4 3.4E-13 1.2E-17 86.2 5.9 105 1-110 131-250 (299)
168 2h5e_A Peptide chain release f 99.4 1.2E-11 4.3E-16 84.9 12.2 62 1-67 88-149 (529)
169 1ega_A Protein (GTP-binding pr 99.4 1.6E-12 5.4E-17 83.7 7.4 101 1-111 62-173 (301)
170 1r5b_A Eukaryotic peptide chai 99.4 1.7E-13 6E-18 92.8 2.3 100 1-104 127-243 (467)
171 3izq_1 HBS1P, elongation facto 99.3 4E-12 1.4E-16 88.6 7.1 100 1-103 251-362 (611)
172 1f60_A Elongation factor EEF1A 99.3 4.2E-12 1.5E-16 85.9 6.9 98 1-102 91-201 (458)
173 3h2y_A GTPase family protein; 99.3 1.3E-12 4.4E-17 86.2 4.1 97 5-109 56-156 (368)
174 2dy1_A Elongation factor G; tr 99.3 2.1E-11 7.1E-16 85.8 9.9 60 1-65 80-139 (665)
175 2qtf_A Protein HFLX, GTP-bindi 99.3 1.3E-11 4.5E-16 81.4 7.9 103 1-111 232-352 (364)
176 1dar_A EF-G, elongation factor 99.3 6.2E-11 2.1E-15 83.7 11.3 62 1-67 83-144 (691)
177 3mca_A HBS1, elongation factor 99.3 3.3E-13 1.1E-17 93.7 -0.8 106 1-110 261-394 (592)
178 3ec1_A YQEH GTPase; atnos1, at 99.3 3.4E-12 1.2E-16 84.3 3.7 99 4-110 57-159 (369)
179 2j69_A Bacterial dynamin-like 99.2 1.4E-11 4.6E-16 87.1 6.3 106 1-111 180-323 (695)
180 3t5d_A Septin-7; GTP-binding p 99.2 2.5E-12 8.7E-17 81.7 1.9 87 19-111 116-202 (274)
181 2rdo_7 EF-G, elongation factor 99.2 2.9E-10 9.8E-15 80.5 11.8 62 1-67 88-149 (704)
182 2xtp_A GTPase IMAP family memb 99.2 3.1E-11 1.1E-15 75.9 5.9 105 1-111 77-206 (260)
183 2xex_A Elongation factor G; GT 99.2 5.2E-10 1.8E-14 79.1 12.4 62 1-67 81-142 (693)
184 3vqt_A RF-3, peptide chain rel 99.2 6E-10 2E-14 76.9 11.0 62 1-67 106-167 (548)
185 2qag_A Septin-2, protein NEDD5 99.1 6.7E-12 2.3E-16 82.7 0.9 100 1-110 101-230 (361)
186 1jwy_B Dynamin A GTPase domain 99.1 1.4E-10 4.6E-15 74.8 6.2 106 1-111 137-260 (315)
187 1puj_A YLQF, conserved hypothe 99.1 9.1E-11 3.1E-15 75.0 5.2 97 2-110 6-103 (282)
188 1yrb_A ATP(GTP)binding protein 99.1 2.6E-11 8.8E-16 76.2 2.2 106 1-111 115-255 (262)
189 1pui_A ENGB, probable GTP-bind 99.1 3.9E-10 1.3E-14 68.5 7.1 101 1-111 78-197 (210)
190 3p32_A Probable GTPase RV1496/ 99.0 3.1E-11 1.1E-15 79.3 0.0 99 1-111 178-282 (355)
191 2x2e_A Dynamin-1; nitration, h 99.0 1.5E-10 5.1E-15 76.0 3.1 103 1-109 136-254 (353)
192 1udx_A The GTP-binding protein 99.0 1.3E-09 4.4E-14 73.0 7.2 91 15-111 232-323 (416)
193 3t34_A Dynamin-related protein 99.0 1.4E-10 4.8E-15 76.2 1.8 97 1-105 142-253 (360)
194 3j25_A Tetracycline resistance 99.0 1.3E-09 4.3E-14 76.5 6.5 107 1-112 73-238 (638)
195 3lxw_A GTPase IMAP family memb 98.9 1.4E-09 4.7E-14 68.2 5.1 109 1-111 76-206 (247)
196 3zvr_A Dynamin-1; hydrolase, D 98.9 1.5E-09 5.1E-14 77.3 5.8 96 9-109 177-274 (772)
197 3lxx_A GTPase IMAP family memb 98.9 8E-10 2.7E-14 68.7 2.2 65 1-67 84-160 (239)
198 4fn5_A EF-G 1, elongation fact 98.8 3.1E-08 1.1E-12 70.3 9.9 61 1-66 91-151 (709)
199 2wsm_A Hydrogenase expression/ 98.8 1E-09 3.5E-14 67.3 2.1 82 18-111 129-212 (221)
200 2p67_A LAO/AO transport system 98.8 1.2E-09 3.9E-14 71.5 1.9 99 1-111 155-259 (341)
201 1n0u_A EF-2, elongation factor 98.8 1.1E-08 3.7E-13 73.8 5.8 60 1-65 104-163 (842)
202 2qpt_A EH domain-containing pr 98.7 5.9E-09 2E-13 72.1 3.7 63 1-67 160-233 (550)
203 3cnl_A YLQF, putative uncharac 98.7 3E-09 1E-13 67.3 1.6 93 3-110 5-98 (262)
204 2www_A Methylmalonic aciduria 98.7 1.5E-08 5.1E-13 66.5 4.9 99 1-111 173-277 (349)
205 3def_A T7I23.11 protein; chlor 98.6 2.7E-08 9.2E-13 62.7 4.1 65 1-65 90-164 (262)
206 2qnr_A Septin-2, protein NEDD5 98.6 4.3E-09 1.5E-13 67.8 -0.4 85 19-111 127-212 (301)
207 1t9h_A YLOQ, probable GTPase E 98.6 1.1E-08 3.7E-13 66.1 1.4 91 7-106 75-170 (307)
208 1wxq_A GTP-binding protein; st 98.6 9.4E-10 3.2E-14 73.3 -3.9 48 52-104 214-261 (397)
209 1h65_A Chloroplast outer envel 98.4 1.6E-07 5.5E-12 59.4 3.7 65 1-66 93-168 (270)
210 2rcn_A Probable GTPase ENGC; Y 98.3 2E-06 6.7E-11 56.7 7.3 87 15-107 127-213 (358)
211 2qag_C Septin-7; cell cycle, c 98.3 1.2E-07 4.2E-12 63.6 0.6 83 20-111 140-225 (418)
212 2hf9_A Probable hydrogenase ni 98.3 3.6E-07 1.2E-11 56.0 2.3 56 53-111 165-222 (226)
213 2qm8_A GTPase/ATPase; G protei 98.2 2.8E-06 9.4E-11 55.5 6.4 98 1-110 154-258 (337)
214 1jal_A YCHF protein; nucleotid 97.9 0.00014 4.9E-09 48.0 9.0 30 1-30 72-108 (363)
215 2dby_A GTP-binding protein; GD 97.8 5.6E-05 1.9E-09 50.0 6.5 30 1-30 75-111 (368)
216 2j37_W Signal recognition part 96.8 0.0048 1.7E-07 42.5 7.0 102 1-110 190-310 (504)
217 4a9a_A Ribosome-interacting GT 96.6 0.0026 8.8E-08 42.3 4.2 50 14-65 145-195 (376)
218 3ea0_A ATPase, para family; al 94.9 0.29 9.9E-06 29.8 8.2 68 11-80 133-200 (245)
219 2ohf_A Protein OLA1, GTP-bindi 94.9 0.013 4.6E-07 39.1 2.2 30 1-30 92-128 (396)
220 4dzz_A Plasmid partitioning pr 94.1 0.21 7E-06 29.6 6.1 61 1-65 82-143 (206)
221 3end_A Light-independent proto 93.2 0.53 1.8E-05 29.9 7.1 62 15-79 176-238 (307)
222 4a9a_A Ribosome-interacting GT 92.7 0.68 2.3E-05 30.8 7.2 52 51-112 248-299 (376)
223 3sop_A Neuronal-specific septi 92.2 0.2 7E-06 31.6 4.1 46 15-66 108-154 (270)
224 2qag_B Septin-6, protein NEDD5 91.5 0.1 3.5E-06 35.3 2.3 16 51-66 175-190 (427)
225 2ph1_A Nucleotide-binding prot 91.5 1 3.5E-05 27.9 6.7 59 1-64 135-194 (262)
226 3cwq_A Para family chromosome 90.8 0.78 2.7E-05 27.5 5.6 50 13-66 85-134 (209)
227 3k9g_A PF-32 protein; ssgcid, 90.6 1.8 6.1E-05 26.8 7.2 49 12-63 160-208 (267)
228 2v3c_C SRP54, signal recogniti 90.1 1.1 3.9E-05 30.3 6.3 58 1-66 187-252 (432)
229 1g3q_A MIND ATPase, cell divis 89.8 2.1 7.3E-05 25.7 8.7 73 1-79 118-191 (237)
230 3q9l_A Septum site-determining 88.6 1.3 4.4E-05 27.1 5.4 77 1-80 120-206 (260)
231 3dm5_A SRP54, signal recogniti 88.4 1.1 3.9E-05 30.5 5.3 59 1-66 189-253 (443)
232 1j8m_F SRP54, signal recogniti 88.0 1.6 5.4E-05 27.9 5.6 58 1-66 187-253 (297)
233 1wcv_1 SOJ, segregation protei 85.5 2.2 7.5E-05 26.3 5.2 62 1-66 118-183 (257)
234 1hyq_A MIND, cell division inh 85.1 2.1 7.1E-05 26.3 5.0 59 1-65 117-175 (263)
235 3kjh_A CO dehydrogenase/acetyl 83.9 1.8 6.2E-05 26.2 4.3 60 13-78 148-207 (254)
236 3bfv_A CAPA1, CAPB2, membrane 83.8 3 0.0001 26.2 5.3 45 16-65 212-257 (271)
237 3kl4_A SRP54, signal recogniti 81.1 2.9 9.8E-05 28.4 4.7 41 18-65 211-251 (433)
238 3la6_A Tyrosine-protein kinase 78.9 9.9 0.00034 24.1 6.5 48 15-66 221-268 (286)
239 3u7r_A NADPH-dependent FMN red 78.4 4.5 0.00015 24.1 4.5 51 12-62 61-114 (190)
240 1cp2_A CP2, nitrogenase iron p 76.7 6 0.00021 24.3 4.9 47 17-64 139-186 (269)
241 3szr_A Interferon-induced GTP- 75.7 3.1 0.00011 29.4 3.7 55 9-67 174-229 (608)
242 3hyn_A Putative signal transdu 75.5 9.9 0.00034 22.8 5.2 53 7-63 68-120 (189)
243 1ni3_A YCHF GTPase, YCHF GTP-b 71.8 4.1 0.00014 27.2 3.4 30 1-30 91-127 (392)
244 2xxa_A Signal recognition part 70.5 14 0.00049 25.0 5.8 59 1-67 190-255 (433)
245 4hs4_A Chromate reductase; tri 68.7 14 0.00048 22.0 5.0 49 13-61 68-118 (199)
246 1tq4_A IIGP1, interferon-induc 68.4 5.1 0.00018 27.0 3.3 61 51-111 174-251 (413)
247 2l82_A Designed protein OR32; 67.6 10 0.00035 20.6 3.8 46 9-63 69-114 (162)
248 3cio_A ETK, tyrosine-protein k 67.5 14 0.00048 23.4 5.1 45 16-65 234-279 (299)
249 2afh_E Nitrogenase iron protei 67.3 14 0.00048 23.0 5.1 47 17-64 142-189 (289)
250 1eiw_A Hypothetical protein MT 65.5 12 0.00043 20.2 4.0 42 15-61 35-76 (111)
251 3fvw_A Putative NAD(P)H-depend 64.3 17 0.00057 21.4 4.8 51 13-63 62-121 (192)
252 2oze_A ORF delta'; para, walke 63.8 24 0.00081 22.0 6.2 51 15-66 173-226 (298)
253 3k1y_A Oxidoreductase; structu 63.8 18 0.00061 21.5 4.8 48 13-61 80-127 (191)
254 1s2d_A Purine trans deoxyribos 63.3 19 0.00066 21.0 4.8 39 15-59 78-116 (167)
255 1rtt_A Conserved hypothetical 62.8 7.9 0.00027 22.6 3.1 48 15-62 69-118 (193)
256 2xj4_A MIPZ; replication, cell 62.7 5 0.00017 25.2 2.3 27 1-29 110-136 (286)
257 3lcm_A SMU.1420, putative oxid 59.2 19 0.00066 21.2 4.4 49 14-62 69-129 (196)
258 3svl_A Protein YIEF; E. coli C 59.1 25 0.00086 20.7 5.2 49 13-61 67-117 (193)
259 1f8y_A Nucleoside 2-deoxyribos 57.9 21 0.00072 20.5 4.2 42 15-62 75-116 (157)
260 2q62_A ARSH; alpha/beta, flavo 57.7 20 0.00067 22.3 4.4 48 14-61 94-145 (247)
261 1bif_A 6-phosphofructo-2-kinas 56.7 22 0.00076 24.1 4.8 32 13-45 115-146 (469)
262 3ehd_A Uncharacterized conserv 56.5 26 0.00088 20.4 4.5 42 15-62 66-107 (162)
263 3f2v_A General stress protein 55.8 30 0.001 20.5 4.8 50 14-63 54-111 (192)
264 2ark_A Flavodoxin; FMN, struct 53.6 30 0.001 20.0 4.6 48 15-62 49-98 (188)
265 1d4a_A DT-diaphorase, quinone 52.8 27 0.00094 21.8 4.5 49 15-63 90-150 (273)
266 3ha2_A NADPH-quinone reductase 50.9 35 0.0012 19.9 4.7 49 14-62 47-102 (177)
267 1t5b_A Acyl carrier protein ph 50.8 21 0.00072 20.7 3.6 49 14-62 82-142 (201)
268 2fz5_A Flavodoxin; alpha/beta 48.9 28 0.00094 18.7 3.7 45 16-62 44-90 (137)
269 3r6w_A FMN-dependent NADH-azor 48.8 29 0.001 20.5 4.1 48 15-62 84-147 (212)
270 3tem_A Ribosyldihydronicotinam 48.4 39 0.0013 20.5 4.6 49 15-63 89-149 (228)
271 2hpv_A FMN-dependent NADH-azor 46.0 35 0.0012 20.0 4.1 48 15-62 91-150 (208)
272 2ffh_A Protein (FFH); SRP54, s 45.9 44 0.0015 22.6 4.9 57 1-65 187-250 (425)
273 1sqs_A Conserved hypothetical 45.9 36 0.0012 20.6 4.2 48 15-62 76-126 (242)
274 2vzf_A NADH-dependent FMN redu 45.4 28 0.00096 20.4 3.5 45 15-60 66-110 (197)
275 1srv_A Protein (groel (HSP60 c 45.3 35 0.0012 19.5 3.7 39 20-63 26-64 (145)
276 3gfs_A FMN-dependent NADPH-azo 44.2 16 0.00054 20.9 2.3 48 14-62 59-106 (174)
277 1rli_A Trp repressor binding p 43.5 16 0.00056 20.9 2.3 47 15-61 68-124 (184)
278 2f62_A Nucleoside 2-deoxyribos 43.1 47 0.0016 19.2 4.3 43 14-62 63-108 (161)
279 1t0i_A YLR011WP; FMN binding p 42.5 48 0.0016 19.1 4.9 46 13-60 79-124 (191)
280 1wls_A L-asparaginase; structu 42.5 66 0.0023 20.9 5.1 46 14-65 69-114 (328)
281 2a5l_A Trp repressor binding p 42.2 39 0.0013 19.5 3.8 49 15-63 68-119 (200)
282 2nx2_A Hypothetical protein YP 41.9 27 0.00094 20.6 3.1 18 13-30 125-142 (181)
283 5nul_A Flavodoxin; electron tr 39.4 46 0.0016 17.9 3.9 45 15-61 42-88 (138)
284 3osx_A 60 kDa chaperonin; alph 39.2 47 0.0016 20.2 3.7 39 20-63 39-77 (201)
285 2fzv_A Putative arsenical resi 38.8 44 0.0015 21.2 3.8 49 13-61 118-170 (279)
286 2him_A L-asparaginase 1; hydro 38.8 60 0.0021 21.4 4.6 45 14-64 97-141 (358)
287 1o5k_A DHDPS, dihydrodipicolin 36.7 74 0.0025 20.3 4.7 39 17-58 106-144 (306)
288 2ojp_A DHDPS, dihydrodipicolin 36.6 76 0.0026 20.1 4.7 39 17-58 95-133 (292)
289 3h16_A TIR protein; bacteria T 36.3 29 0.00098 19.6 2.5 55 8-63 63-117 (154)
290 1xky_A Dihydrodipicolinate syn 35.5 74 0.0025 20.3 4.5 39 17-58 106-144 (301)
291 3l21_A DHDPS, dihydrodipicolin 35.2 82 0.0028 20.1 4.7 39 17-58 109-147 (304)
292 1vma_A Cell division protein F 34.4 55 0.0019 20.9 3.8 42 18-66 222-263 (306)
293 3eb2_A Putative dihydrodipicol 34.0 75 0.0026 20.2 4.4 39 17-58 98-136 (300)
294 1zu4_A FTSY; GTPase, signal re 33.5 81 0.0028 20.3 4.5 41 18-66 227-268 (320)
295 4ici_A Putative flavoprotein; 33.3 70 0.0024 18.3 4.9 45 15-63 84-128 (171)
296 2v9d_A YAGE; dihydrodipicolini 32.7 83 0.0028 20.6 4.5 39 17-58 125-163 (343)
297 2zki_A 199AA long hypothetical 32.4 58 0.002 18.8 3.5 49 15-63 67-118 (199)
298 3ez9_A Para; DNA binding, wing 32.2 1E+02 0.0034 20.3 4.9 17 13-29 264-280 (403)
299 3d7n_A Flavodoxin, WRBA-like p 32.2 63 0.0021 18.8 3.6 49 14-62 50-101 (193)
300 2ehh_A DHDPS, dihydrodipicolin 32.2 69 0.0024 20.3 4.0 39 17-58 94-132 (294)
301 3l9w_A Glutathione-regulated p 31.7 1.2E+02 0.004 20.4 5.2 50 14-63 288-345 (413)
302 2yxg_A DHDPS, dihydrodipicolin 31.6 70 0.0024 20.2 3.9 39 17-58 94-132 (289)
303 2vc6_A MOSA, dihydrodipicolina 30.7 74 0.0025 20.1 3.9 39 17-58 94-132 (292)
304 3tak_A DHDPS, dihydrodipicolin 30.5 78 0.0027 20.0 4.0 39 17-58 95-133 (291)
305 2khz_A C-MYC-responsive protei 30.4 80 0.0028 18.1 4.2 42 14-63 73-114 (165)
306 3gt7_A Sensor protein; structu 30.3 69 0.0024 17.3 4.1 25 39-63 68-92 (154)
307 3m5v_A DHDPS, dihydrodipicolin 30.1 77 0.0026 20.2 3.9 39 17-58 102-140 (301)
308 3cpr_A Dihydrodipicolinate syn 30.1 79 0.0027 20.2 4.0 39 17-58 110-148 (304)
309 1ydg_A Trp repressor binding p 30.1 54 0.0018 19.2 3.1 48 15-62 75-125 (211)
310 1w3i_A EDA, 2-keto-3-deoxy glu 30.0 78 0.0027 20.1 3.9 39 17-58 90-129 (293)
311 3kht_A Response regulator; PSI 29.9 67 0.0023 17.0 4.0 39 23-63 54-92 (144)
312 3qze_A DHDPS, dihydrodipicolin 29.4 80 0.0027 20.3 3.9 39 17-58 117-155 (314)
313 3p0r_A Azoreductase; structura 29.3 93 0.0032 18.5 4.6 49 14-62 88-148 (211)
314 3si9_A DHDPS, dihydrodipicolin 29.0 82 0.0028 20.3 3.9 39 17-58 116-154 (315)
315 3b6i_A Flavoprotein WRBA; flav 28.7 44 0.0015 19.2 2.5 50 14-63 64-116 (198)
316 3flu_A DHDPS, dihydrodipicolin 28.4 88 0.003 19.9 4.0 39 17-58 101-139 (297)
317 1zpw_X Hypothetical protein TT 28.0 67 0.0023 16.4 3.5 25 21-45 5-29 (90)
318 3jrn_A AT1G72930 protein; TIR 28.0 80 0.0027 18.6 3.5 46 14-63 58-106 (176)
319 3gl9_A Response regulator; bet 27.7 69 0.0024 16.5 3.4 23 40-62 64-86 (122)
320 3cg4_A Response regulator rece 27.7 72 0.0025 16.7 3.9 24 40-63 69-92 (142)
321 2zay_A Response regulator rece 27.5 75 0.0026 16.8 4.3 25 39-63 69-93 (147)
322 3nhm_A Response regulator; pro 27.1 72 0.0025 16.5 3.7 25 39-63 64-88 (133)
323 2woj_A ATPase GET3; tail-ancho 26.9 1.3E+02 0.0046 19.5 5.6 41 18-63 234-275 (354)
324 2r8w_A AGR_C_1641P; APC7498, d 26.9 70 0.0024 20.8 3.4 39 17-58 128-166 (332)
325 3d0c_A Dihydrodipicolinate syn 26.6 72 0.0025 20.5 3.4 39 17-58 105-143 (314)
326 2px0_A Flagellar biosynthesis 26.3 98 0.0034 19.6 3.9 59 1-66 189-253 (296)
327 3s2y_A Chromate reductase; ura 32.1 14 0.00048 21.9 0.0 48 14-61 69-118 (199)
328 2nuw_A 2-keto-3-deoxygluconate 26.0 78 0.0027 20.0 3.4 39 17-58 90-129 (288)
329 1ls1_A Signal recognition part 25.8 1.2E+02 0.0041 19.1 4.3 42 18-66 210-251 (295)
330 3rl5_A Metallophosphoesterase 25.7 1.2E+02 0.0041 19.4 4.2 45 16-63 77-121 (296)
331 2rfg_A Dihydrodipicolinate syn 25.7 76 0.0026 20.2 3.3 39 17-58 94-132 (297)
332 2ivy_A Hypothetical protein SS 25.4 82 0.0028 16.5 3.2 24 21-44 4-27 (101)
333 3exc_X Uncharacterized protein 25.4 78 0.0027 16.3 3.7 25 20-44 4-28 (91)
334 3zyz_A Beta-D-glucoside glucoh 25.4 58 0.002 23.7 3.0 13 15-27 424-436 (713)
335 2r91_A 2-keto-3-deoxy-(6-phosp 25.3 79 0.0027 19.9 3.4 39 17-58 89-128 (286)
336 3daq_A DHDPS, dihydrodipicolin 25.3 76 0.0026 20.1 3.3 39 17-58 96-134 (292)
337 2xzm_U Ribosomal protein L7AE 25.2 60 0.002 17.9 2.5 40 18-64 40-79 (126)
338 3na8_A Putative dihydrodipicol 25.2 79 0.0027 20.3 3.4 39 17-58 118-156 (315)
339 3t6k_A Response regulator rece 25.1 83 0.0028 16.5 3.2 13 51-63 77-89 (136)
340 1k68_A Phytochrome response re 25.0 78 0.0027 16.4 3.0 24 40-63 73-96 (140)
341 2qvg_A Two component response 25.0 83 0.0028 16.5 4.1 25 39-63 76-100 (143)
342 1nns_A L-asparaginase II; amid 24.8 1.3E+02 0.0046 19.5 4.4 44 15-65 76-119 (326)
343 2hmc_A AGR_L_411P, dihydrodipi 24.8 1.2E+02 0.0039 19.9 4.1 39 17-58 117-157 (344)
344 1f6k_A N-acetylneuraminate lya 24.6 78 0.0027 20.0 3.2 39 17-58 98-136 (293)
345 3m6c_A 60 kDa chaperonin 1; ch 24.6 60 0.0021 19.6 2.5 39 20-63 32-70 (194)
346 3heb_A Response regulator rece 24.5 89 0.0031 16.7 3.5 25 39-63 76-100 (152)
347 3i42_A Response regulator rece 24.2 81 0.0028 16.1 3.4 24 40-63 65-88 (127)
348 3pzx_A Formate--tetrahydrofola 23.9 2E+02 0.0068 20.5 5.2 23 38-64 364-386 (557)
349 3cnb_A DNA-binding response re 23.5 89 0.003 16.3 4.7 25 39-63 71-95 (143)
350 3e96_A Dihydrodipicolinate syn 23.4 65 0.0022 20.7 2.7 44 17-63 105-148 (316)
351 2wkj_A N-acetylneuraminate lya 23.3 85 0.0029 20.0 3.2 39 17-58 105-144 (303)
352 3u7i_A FMN-dependent NADH-azor 23.0 1.3E+02 0.0045 18.1 4.8 51 13-63 89-152 (223)
353 2amj_A Modulator of drug activ 22.9 1.3E+02 0.0043 17.8 5.1 30 15-44 67-96 (204)
354 1zq1_A Glutamyl-tRNA(Gln) amid 22.8 1.9E+02 0.0064 19.8 5.0 41 18-64 168-208 (438)
355 1i3c_A Response regulator RCP1 22.7 98 0.0034 16.5 3.2 13 51-63 90-102 (149)
356 3n53_A Response regulator rece 22.6 94 0.0032 16.2 4.1 26 38-63 62-87 (140)
357 3abz_A Beta-glucosidase I; gly 22.5 67 0.0023 24.0 2.9 42 15-60 570-622 (845)
358 3h1g_A Chemotaxis protein CHEY 22.2 93 0.0032 16.0 3.3 23 40-62 69-91 (129)
359 3ezx_A MMCP 1, monomethylamine 21.6 1.4E+02 0.0048 17.9 4.5 55 18-79 143-197 (215)
360 3h5d_A DHDPS, dihydrodipicolin 21.6 1.7E+02 0.0057 18.8 4.5 38 18-58 102-140 (311)
361 1ag9_A Flavodoxin; electron tr 21.5 1.2E+02 0.0042 17.2 4.1 45 15-60 42-87 (175)
362 3bch_A 40S ribosomal protein S 21.0 63 0.0022 20.3 2.2 55 4-63 59-115 (253)
363 3e70_C DPA, signal recognition 20.7 1.1E+02 0.0038 19.7 3.4 40 18-64 241-280 (328)
364 1uf3_A Hypothetical protein TT 20.7 1.3E+02 0.0046 17.3 5.2 43 18-64 32-75 (228)
365 3pg5_A Uncharacterized protein 20.6 1.8E+02 0.0063 18.8 4.8 27 10-37 167-193 (361)
366 2zkq_b 40S ribosomal protein S 20.4 53 0.0018 21.2 1.8 54 4-62 26-81 (295)
367 3a5f_A Dihydrodipicolinate syn 20.1 76 0.0026 20.1 2.5 39 17-58 95-133 (291)
No 1
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.93 E-value=1.8e-24 Score=127.59 Aligned_cols=112 Identities=64% Similarity=1.214 Sum_probs=97.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.....++.+.++..
T Consensus 50 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 129 (164)
T 1r8s_A 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 129 (164)
T ss_dssp ECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred EcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999999999999999988765445689999999999998776677787777765
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++++||+++.|++++++++.+.+.
T Consensus 130 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 130 SLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred cccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 55566789999999999999999999988763
No 2
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.93 E-value=2.7e-24 Score=129.28 Aligned_cols=111 Identities=46% Similarity=0.823 Sum_probs=96.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..|+.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+....+++.+.++..
T Consensus 66 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 145 (181)
T 1fzq_A 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLH 145 (181)
T ss_dssp ECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCch
Confidence 89999999999999999999999999999999999998898888665434679999999999998776677777776655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......+++++|||++|.|++++|+++.+.+
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 146 TIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 4455678999999999999999999998765
No 3
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.92 E-value=5.1e-24 Score=129.20 Aligned_cols=112 Identities=58% Similarity=1.141 Sum_probs=93.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.....++.+.++..
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 158 (192)
T 2b6h_A 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQ 158 (192)
T ss_dssp ECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999999999999999988765444689999999999998776777888877766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....++++++|||+++.|++++++++.+.+.
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 56567789999999999999999999998764
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=1.9e-25 Score=137.95 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=86.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|+++|+.++..|+.+++++++|||++++.+++....|+..+.... ..+.|++||+||+|+.+. .+.++..+ +.
T Consensus 68 DtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-~a 145 (216)
T 4dkx_A 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-KA 145 (216)
T ss_dssp CCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-HH
T ss_pred ECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-HH
Confidence 899999999999999999999999999999999999999999886543 367899999999998653 23332221 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|+.|++.+
T Consensus 146 ----~~~~~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 146 ----KELNVMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp ----HHHTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred ----HHhCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 11235689999999999999999998765
No 5
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=9.9e-24 Score=127.15 Aligned_cols=112 Identities=46% Similarity=0.830 Sum_probs=93.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.....++.+.+...
T Consensus 66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 145 (187)
T 1zj6_A 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT 145 (187)
T ss_dssp ECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChh
Confidence 89999999999999999999999999999999999999999998765434679999999999998766677777766654
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+...+++++++||+++.|++++++++++.+.
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 146 SIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp GCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 44456789999999999999999999987653
No 6
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=9.5e-24 Score=125.17 Aligned_cols=111 Identities=43% Similarity=0.848 Sum_probs=97.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.++.....|+..+.......++|+++++||+|+.+.....++.+.++..
T Consensus 57 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 136 (171)
T 1upt_A 57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLP 136 (171)
T ss_dssp EECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG
T ss_pred ECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCch
Confidence 89999999999999999999999999999998999998999888765444689999999999998776777777777665
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++++++.+.+
T Consensus 137 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 137 ALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp GCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 5556778999999999999999999998765
No 7
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.91 E-value=9.8e-24 Score=128.53 Aligned_cols=112 Identities=31% Similarity=0.657 Sum_probs=90.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..|+.++|++++|+|++++.+++....|+..+.+.....++|+++++||+|+.+..+.+++.+.....
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 154 (198)
T 1f6b_A 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 154 (198)
T ss_dssp EECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCT
T ss_pred ECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcc
Confidence 89999999999999999999999999999999999999999988765444689999999999998766677776665532
Q ss_pred c---------cC---CCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 R---------IR---DRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~---------~~---~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. +. ...+++++|||++|.|++++|+++.+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 155 GQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp TTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred cccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 1 11 24678999999999999999999998753
No 8
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.91 E-value=1.5e-23 Score=126.94 Aligned_cols=111 Identities=35% Similarity=0.638 Sum_probs=94.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+.+.....++|+++++||+|+.+..+.+++.+.+...
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 152 (190)
T 1m2o_B 73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLL 152 (190)
T ss_dssp ECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCS
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999988765444689999999999998766677777665543
Q ss_pred c-------cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 R-------IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~-------~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .....+++++|||+++.|++++|+++.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 153 NTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp SCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccccccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 2 123567899999999999999999998753
No 9
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.91 E-value=9.8e-24 Score=126.67 Aligned_cols=111 Identities=45% Similarity=0.828 Sum_probs=95.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.+.....
T Consensus 71 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 150 (181)
T 2h17_A 71 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT 150 (181)
T ss_dssp EESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999998999999999888765334689999999999998776777777776655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++|++|.+.+
T Consensus 151 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 151 SIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp GCCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred cccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence 5555678999999999999999999998753
No 10
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=1.5e-23 Score=126.59 Aligned_cols=112 Identities=31% Similarity=0.700 Sum_probs=96.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+.....++.+.....
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 152 (188)
T 1zd9_A 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLS 152 (188)
T ss_dssp EECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChh
Confidence 89999999999999999999999999999999999999999888765434679999999999998766667777776655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++++||+++.|++++|+++.+.+.
T Consensus 153 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 153 AIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55556788999999999999999999998764
No 11
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=1.6e-23 Score=126.04 Aligned_cols=111 Identities=44% Similarity=0.836 Sum_probs=96.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..+++++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.+.+...
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (186)
T 1ksh_A 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELD 147 (186)
T ss_dssp EECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChh
Confidence 89999999999999999999999999999999999998999888765444679999999999998776777777766654
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++++++.+.+
T Consensus 148 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 148 SIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4445678999999999999999999998765
No 12
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.91 E-value=1.2e-23 Score=126.87 Aligned_cols=111 Identities=47% Similarity=0.910 Sum_probs=97.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..+++++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.+..+..
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 151 (189)
T 2x77_A 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVS 151 (189)
T ss_dssp EECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChh
Confidence 89999999999999999999999999999998999999999888765445689999999999998776677777777655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++++++.+.+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 152 SIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 5556678999999999999999999998764
No 13
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.91 E-value=3.5e-23 Score=124.99 Aligned_cols=112 Identities=40% Similarity=0.735 Sum_probs=95.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCC--CCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM--RDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+...... .++|+++|+||+|+.+.....++.+...
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 152 (190)
T 2h57_A 73 DMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC 152 (190)
T ss_dssp EECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC
Confidence 89999999999999999999999999999998999998999888765433 5789999999999987667777766665
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...+...+++++++||+++.|++++++++.+.++
T Consensus 153 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 4444445789999999999999999999988764
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.91 E-value=7.9e-24 Score=128.37 Aligned_cols=111 Identities=32% Similarity=0.601 Sum_probs=95.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCC-------CCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-------RDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
||||++++..++..++.++|++|+|+|++++.++.....|+..+...... .++|+++|+||+|+.+.....++
T Consensus 69 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~ 148 (199)
T 4bas_A 69 DMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAEL 148 (199)
T ss_dssp EECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHH
T ss_pred ECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHH
Confidence 89999999999999999999999999999999999999999888664221 27899999999999887777777
Q ss_pred HHHhCCCcc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.++.... ...++++++|||+++.|++++|++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 149 VEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 777765443 45778999999999999999999998764
No 15
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=2.9e-23 Score=124.42 Aligned_cols=111 Identities=45% Similarity=0.885 Sum_probs=93.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.+.++..
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~ 147 (183)
T 1moz_A 68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLV 147 (183)
T ss_dssp EEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTT
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 79999999999999999999999999999999999999999988765444689999999999998777777787777655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++++++.+.+
T Consensus 148 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 148 ELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred cccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 5555678999999999999999999998764
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=132.36 Aligned_cols=112 Identities=64% Similarity=1.214 Sum_probs=95.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++..+|++|+|+|++++.++.....|+..+.......++|+++|+||+|+.+.....++...++..
T Consensus 215 Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~ 294 (329)
T 3o47_A 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 294 (329)
T ss_dssp ECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCT
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchh
Confidence 89999999999999999999999999999999999998888888766545689999999999998877788888888877
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++++||+++.|++++|++|.+.+.
T Consensus 295 ~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 295 SLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred hhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 66677899999999999999999999998753
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=2.4e-22 Score=136.71 Aligned_cols=112 Identities=97% Similarity=1.540 Sum_probs=100.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++|+|||++++.++.....|+..+.+.....++|+++|+||+|+.+.....++.+.++..
T Consensus 372 Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~ 451 (497)
T 3lvq_E 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 451 (497)
T ss_dssp EECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCT
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchh
Confidence 89999999999999999999999999999999999999999998776555689999999999998877788888887776
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
......+++++|||++|.|++++|++|.+.++
T Consensus 452 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 452 RIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp TCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred hhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 66667889999999999999999999998764
No 18
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.89 E-value=6.6e-23 Score=124.86 Aligned_cols=110 Identities=17% Similarity=0.324 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHH---HHHHcCcC-CCCCeEEEEEeCC-CCCCCCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQEL---HRIINDRE-MRDAIILIFANKQ-DLPDAMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~ 75 (113)
|.+||++++.+|++||.++|++|||+|.++....+ ....+ ..++.... ..++|++|.+||. |++++.+..++.+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 45799999999999999999999999999876544 44444 33333332 3789999999995 8888899999999
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+++..+ ...|.+..|||++|+|+.+.++||...++
T Consensus 187 ~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 9998776 47999999999999999999999998764
No 19
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=1.4e-21 Score=118.01 Aligned_cols=104 Identities=26% Similarity=0.352 Sum_probs=86.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 74 (113)
||||+++++.++..++.++|++|+|+|++ +..++.....|+..+.. ...++|+++|+||+|+.+....++..
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~ 157 (198)
T 3t1o_A 80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVR 157 (198)
T ss_dssp ECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHH
T ss_pred eCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHH
Confidence 89999999999999999999999999999 44566777778887732 24689999999999998876666665
Q ss_pred HHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.... .++ +++++||+++.|++++|+++.+.+
T Consensus 158 ~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 158 AVVDP-----EGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp HHHCT-----TCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred HHHHh-----cCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 54442 344 799999999999999999998764
No 20
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=1.3e-22 Score=119.75 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=70.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|+++++.++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ...+. +.+.
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~ 133 (166)
T 3q72_A 55 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG-RACA 133 (166)
T ss_dssp ECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHH-HHHH
T ss_pred ECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999999999988765445689999999999987543 22222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++|+++.+.+
T Consensus 134 ~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 134 V----VFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp H----HTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred H----HhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 1 1345799999999999999999998765
No 21
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=2.2e-22 Score=118.93 Aligned_cols=106 Identities=22% Similarity=0.314 Sum_probs=84.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-----CCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-----MKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~ 75 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+. ....+. +
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~-~ 135 (170)
T 1ek0_A 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEG-E 135 (170)
T ss_dssp EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHH-H
T ss_pred ECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHH-H
Confidence 799999999999999999999999999999999999889988886542 257899999999998643 222222 2
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+. ...+++++++||+++.|++++|+++.+.+.
T Consensus 136 ~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 136 KLA----EEKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp HHH----HHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred HHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 111 112457999999999999999999998764
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=7.1e-21 Score=116.04 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++|+||+|+.+. .+.++..+...
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 162 (201)
T 2hup_A 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE 162 (201)
T ss_dssp CCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH
Confidence 899999999999999999999999999999989998889998886542 257899999999999652 33333332211
Q ss_pred CCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++ +++++||+++.|++++|+++.+.+
T Consensus 163 -----~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 163 -----HYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp -----HTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----HcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1234 789999999999999999998764
No 23
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=123.54 Aligned_cols=110 Identities=18% Similarity=0.329 Sum_probs=88.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHH---HHHcCcC-CCCCeEEEEEeC-CCCCCCCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELH---RIINDRE-MRDAIILIFANK-QDLPDAMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~p~ilv~nK-~D~~~~~~~~~~~~ 75 (113)
|.+||++++.+|++||.++|++|||+|.++..+++ ....+. .+..... ..++|++|.+|| .|++++.+..++.+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e 271 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 271 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHH
Confidence 46899999999999999999999999999877654 333222 3332221 368999999996 69999999999999
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+++..+. ..|.+..|||.+|+|+.+.++||.+.++
T Consensus 272 ~L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 272 ELHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HTTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HcCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 99987664 7999999999999999999999998764
No 24
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=3.4e-21 Score=115.72 Aligned_cols=107 Identities=17% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.....+....+..
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~- 136 (189)
T 4dsu_A 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR- 136 (189)
T ss_dssp ECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH-
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH-
Confidence 8999999999999999999999999999999999999899888876544568999999999999754322222222211
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 137 ---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 137 ---SYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp ---HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1134689999999999999999998764
No 25
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.85 E-value=5.4e-22 Score=117.45 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=79.1
Q ss_pred CCCCccCchh-hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~-~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
||||++++.. ++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+ +
T Consensus 57 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~ 135 (169)
T 3q85_A 57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L 135 (169)
T ss_dssp CCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHH-H
T ss_pred ECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHH-H
Confidence 8999999986 778889999999999999999999999999998876543457999999999998643 23332222 1
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+++++++||+++.|++++|+++.+.+
T Consensus 136 ~----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 136 A----GTLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp H----HHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H----HHcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 1 12345799999999999999999998865
No 26
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=118.50 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=84.1
Q ss_pred CCCCccCchh-hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~-~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
||+|++++.. ++..|+..+|++|+|||++++.+++....|+..+.......++|+++|+||+|+.+. .+..+..+ +
T Consensus 78 Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~ 156 (195)
T 3cbq_A 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L 156 (195)
T ss_dssp CCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-H
T ss_pred ecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-H
Confidence 8999998875 888899999999999999999999999999988865433357999999999999753 23333222 1
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+++++++||+++.|++++|+++++.+
T Consensus 157 a----~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 157 A----GTLSCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp H----HHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred H----HHhCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 1 11235789999999999999999998765
No 27
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.1e-20 Score=114.04 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=85.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.++.....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 70 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~- 148 (195)
T 1x3s_A 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR- 148 (195)
T ss_dssp EECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-
T ss_pred eCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-
Confidence 7999999999999999999999999999999899988999998866543457899999999998543 22332222111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 149 ----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 149 ----KHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp ----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 2345799999999999999999998754
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.85 E-value=5.4e-21 Score=114.55 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=85.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~ 151 (183)
T 3kkq_A 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT 151 (183)
T ss_dssp ECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH
T ss_pred ECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH
Confidence 8999999999999999999999999999999999998899888865433467899999999998653 33332222111
Q ss_pred CCccCCCCeEEEecccc-CCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCAT-TADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~-~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+ ++.|++++|+++.+.+
T Consensus 152 -----~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 152 -----KYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp -----HHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred -----HhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 112468999999 9999999999998765
No 29
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=7.2e-22 Score=116.54 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=85.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ..++..+...
T Consensus 57 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 136 (167)
T 1c1y_A 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR 136 (167)
T ss_dssp EECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH
Confidence 79999999999999999999999999999998998888888877654334679999999999986532 2333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ..+++++++||+++.|++++++++.+.+.
T Consensus 137 -~---~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 137 -Q---WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp -H---TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred -H---ccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 1 12467999999999999999999988653
No 30
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.85 E-value=2.9e-21 Score=115.43 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=85.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+.. ...+..+...
T Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 145 (181)
T 2efe_B 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ 145 (181)
T ss_dssp ECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred eCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999899998886542 2578999999999986532 3333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+++++++||+++.|++++++++.+.+.
T Consensus 146 -----~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 146 -----ENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp -----HTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred -----HcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 13457999999999999999999987653
No 31
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.84 E-value=4.3e-22 Score=119.19 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=83.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ...+..+...
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (181)
T 3t5g_A 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE 139 (181)
T ss_dssp ECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred eCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH
Confidence 89999999999999999999999999999999999999998888665444578999999999986532 2333222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 140 -----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 140 -----SWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp -----HTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred -----HhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 1345799999999999999999998765
No 32
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=5.9e-22 Score=116.82 Aligned_cols=106 Identities=18% Similarity=0.272 Sum_probs=83.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1u8z_A 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD 137 (168)
T ss_dssp ECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH
Confidence 8999999999999999999999999999999999998899888866543357999999999998653 23333322221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 138 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 138 -----QWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp -----HHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 1235799999999999999999998765
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.84 E-value=1.8e-21 Score=115.03 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=85.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+. ....+..+...
T Consensus 61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (170)
T 1r2q_A 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYAD 139 (170)
T ss_dssp EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred eCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHH
Confidence 799999999999999999999999999999989999889988886532 257899999999998643 22333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+++++++||+++.|++++++++.+.+.
T Consensus 140 -----~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 140 -----DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp -----HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred -----HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 23467999999999999999999998764
No 34
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.84 E-value=2.5e-21 Score=115.02 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=77.2
Q ss_pred CCCCccC--chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHH
Q psy17510 1 DVGGQDK--IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~--~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~ 76 (113)
||||+++ +..++..++..+|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+.. ...+...
T Consensus 58 D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~- 136 (175)
T 2nzj_A 58 DTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA- 136 (175)
T ss_dssp CCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-
T ss_pred ecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-
Confidence 8999988 5677888999999999999999999999998998888664334579999999999997542 2322221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+. ...+++++++||++|.|++++|+++.+.+
T Consensus 137 ~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 137 CA----VVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp HH----HHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HH----HHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 11 11235799999999999999999998765
No 35
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.84 E-value=1.2e-20 Score=113.00 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=86.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+. ....+..+...
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 151 (187)
T 2a9k_A 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE 151 (187)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH
Confidence 8999999999999999999999999999999999999899888866543357999999999998653 23333332221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 152 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 152 -----QWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp -----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 2345799999999999999999998764
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.84 E-value=8.6e-22 Score=117.54 Aligned_cols=106 Identities=19% Similarity=0.304 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.++.....|+..+.+.....++|+++++||+|+.+.. ...+. ..+.
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~ 141 (181)
T 2fn4_A 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA-SAFG 141 (181)
T ss_dssp ECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH-HHHH
T ss_pred ECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999988998888554334678999999999986532 22222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++++++.+.+
T Consensus 142 ----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 142 ----ASHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp ----HHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----HHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 12356799999999999999999998764
No 37
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=9.9e-21 Score=113.40 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=70.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+.. +..+..+...
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 141 (183)
T 2fu5_C 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL 141 (183)
T ss_dssp EC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH
T ss_pred cCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH
Confidence 899999999999999999999999999999989999888998886532 2578999999999997532 3333222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 142 -----~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 142 -----DYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp -----HHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred -----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1235799999999999999999998754
No 38
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=113.76 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=86.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+. ....+..+...
T Consensus 68 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (206)
T 2bov_A 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE 147 (206)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH
Confidence 8999999999999999999999999999999999999999888876543457999999999998653 23333322221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 148 -----~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 148 -----QWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp -----HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -----HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1235799999999999999999998754
No 39
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.84 E-value=1.6e-20 Score=113.04 Aligned_cols=106 Identities=17% Similarity=0.266 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.++.....|+..+.......++|+++++||+|+.+. ...++..+...
T Consensus 76 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (195)
T 3bc1_A 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE 155 (195)
T ss_dssp EECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 7999999999999999999999999999999999988899888866443357899999999998653 23333222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|+++++++|.+.+
T Consensus 156 -----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 156 -----KYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp -----HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998754
No 40
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.84 E-value=3.4e-21 Score=114.72 Aligned_cols=105 Identities=21% Similarity=0.331 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+. ...++..+...
T Consensus 70 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 148 (179)
T 1z0f_A 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE 148 (179)
T ss_dssp ECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 899999999999999999999999999999989988888988876532 257899999999998643 22333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 149 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 -----ENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp -----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1345799999999999999999998765
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.83 E-value=4.8e-21 Score=113.25 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+... .....|+++++||+|+.+.. ..++. ..+.
T Consensus 61 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~-~~~~ 138 (170)
T 1z0j_A 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDA-KDYA 138 (170)
T ss_dssp EECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred cCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHH-HHHH
Confidence 79999999999999999999999999999998998888888888653 23678999999999986532 22222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...+++++++||+++.|++++++++.+.+.
T Consensus 139 ----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 139 ----DSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ----HHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ----HHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 113467999999999999999999988753
No 42
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=5.2e-20 Score=111.34 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=86.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+. ...++..+...
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~ 156 (192)
T 2fg5_A 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE 156 (192)
T ss_dssp EECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred cCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 799999999999999999999999999999999999889988886532 257899999999998642 23333333221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+++++++||+++.|++++++++.+.+.
T Consensus 157 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 -----SIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp -----TTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -----HcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 23568999999999999999999988653
No 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.83 E-value=3e-21 Score=116.73 Aligned_cols=105 Identities=22% Similarity=0.333 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+... ..+... +.
T Consensus 71 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~ 148 (196)
T 3tkl_A 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKE-FA 148 (196)
T ss_dssp EECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH
T ss_pred ECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHH-HH
Confidence 799999999999999999999999999999999998888988885532 25789999999999875432 222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 149 ----~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 149 ----DSLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp ----HHTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11234689999999999999999998764
No 44
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.83 E-value=1.9e-21 Score=117.54 Aligned_cols=105 Identities=24% Similarity=0.369 Sum_probs=84.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+. ....+..+. .
T Consensus 76 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-~ 153 (191)
T 2a5j_A 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAF-A 153 (191)
T ss_dssp CCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-H
T ss_pred ECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHH-H
Confidence 899999999999999999999999999999999998888988886532 257899999999998653 223222221 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 154 ----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 154 ----REHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp ----HHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11245789999999999999999998754
No 45
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=6.6e-22 Score=120.44 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+.. ...+... +.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~ 156 (201)
T 3oes_A 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-LA 156 (201)
T ss_dssp EECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-HH
T ss_pred ECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-HH
Confidence 89999999999999999999999999999999999999999998775444678999999999986432 2222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++|+++.+.+
T Consensus 157 ~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 157 E----SWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp H----HHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred H----HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 1234799999999999999999998764
No 46
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.83 E-value=6.3e-22 Score=116.59 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=84.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.. ...+..+ +.
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~ 135 (167)
T 1kao_A 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-LA 135 (167)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-HH
T ss_pred ECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH-HH
Confidence 89999999999999999999999999999998999888888888664334579999999999986432 2222221 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++++++.+.+
T Consensus 136 ~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 136 E----EWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp H----HHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred H----HhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 1 1234689999999999999999998765
No 47
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=4.1e-20 Score=110.05 Aligned_cols=107 Identities=16% Similarity=0.228 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC---CCCCeEEEEEeCCCCCCC-CCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDA-MKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~-~~~~~~~~~ 76 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+..... ..++|+++++||+|+.+. ....+..+.
T Consensus 62 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~ 141 (177)
T 1wms_A 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW 141 (177)
T ss_dssp ECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred eCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHH
Confidence 8999999999999999999999999999999888888888887754321 257899999999998632 333333332
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... ...++++++||+++.|++++|+++.+.+
T Consensus 142 ~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 142 CRD----NGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp HHH----TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHh----cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 220 2345799999999999999999998764
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.4e-21 Score=119.34 Aligned_cols=105 Identities=20% Similarity=0.319 Sum_probs=83.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+. ....+..+ +.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~ 158 (201)
T 2ew1_A 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEE-FS 158 (201)
T ss_dssp EECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHH-HH
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH
Confidence 799999999999999999999999999999999988888988876532 257899999999998643 22332222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 159 ----~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 159 ----EAQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp ----HHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11235689999999999999999998654
No 49
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=4.2e-21 Score=118.18 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=81.6
Q ss_pred CCCCccC-chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDK-IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~-~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
||+|++. ++.+...|+..++++++|||++++.+++....|+..+.+.....++|+++|+||+|+.+. ....+. ..+
T Consensus 93 Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~ 171 (211)
T 2g3y_A 93 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC 171 (211)
T ss_dssp CCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH
T ss_pred ecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHH
Confidence 7889887 566777889999999999999999999999889888765433357999999999998643 222221 111
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...++++++|||++|.|++++|+++++.+
T Consensus 172 a----~~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 172 A----VVFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp H----HHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 11235789999999999999999998765
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.9e-21 Score=116.15 Aligned_cols=105 Identities=18% Similarity=0.290 Sum_probs=76.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+..... .++|+++++||+|+.+.. ...+..+...
T Consensus 66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 144 (180)
T 2g6b_A 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK 144 (180)
T ss_dssp ECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH
Confidence 8999999999999999999999999999999898888888888765322 578999999999997532 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 145 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 145 -----EYGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp -----HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998764
No 51
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.83 E-value=2.4e-21 Score=116.87 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=83.0
Q ss_pred CCCCccCch-hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHh
Q psy17510 1 DVGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~-~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~ 77 (113)
||||++++. .++..+++.+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ...+. +.+
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~ 153 (189)
T 1z06_A 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA-QKF 153 (189)
T ss_dssp ECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH-HHH
T ss_pred ECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHH-HHH
Confidence 899999998 89999999999999999999999999888898888665334679999999999986532 22222 222
Q ss_pred CCCccCCCCeEEEeccccCC---CCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTA---DGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~---~~i~~~~~~l~~~~~ 112 (113)
.. ..+++++++||+++ .|+.++|++|.+.+.
T Consensus 154 ~~----~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 154 AD----THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HH----HTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HH----HcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 11 13356899999999 999999999987653
No 52
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.83 E-value=6.6e-20 Score=110.43 Aligned_cols=102 Identities=11% Similarity=0.170 Sum_probs=79.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----CCCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD----AMKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~~~~~~~~~ 76 (113)
||+|+++++ ++.++|++++|||++++.+++....|+..+.......+.|+++++||+|+.+ ..+..+..+.
T Consensus 73 Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~ 147 (184)
T 3ihw_A 73 DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKL 147 (184)
T ss_dssp ECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHH
T ss_pred ECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHH
Confidence 799999887 7788999999999999999999999999997754345789999999999842 2333332222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... ...+++++|||+++.|++++|+++++.+
T Consensus 148 ~~~----~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 148 STD----LKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp HHH----TTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHH----cCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 111 1135789999999999999999998764
No 53
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.83 E-value=3.5e-21 Score=126.23 Aligned_cols=111 Identities=28% Similarity=0.453 Sum_probs=88.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---- 66 (113)
|||||++++++|.+|+.+++++|||+|+++ ..++.....|+..+...+...+.|+++++||+|+.+
T Consensus 199 Dt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~ 278 (353)
T 1cip_A 199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 278 (353)
T ss_dssp EECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHT
T ss_pred eCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhcc
Confidence 899999999999999999999999999998 567999999999998776667899999999999842
Q ss_pred -------------CCCHHHHHHHhC-----CCcc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 67 -------------AMKPHEIQEKLG-----LTRI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 67 -------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+..+... .... ....+++++|||+++.|+.++|+++.+.+
T Consensus 279 ~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 279 KSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp TSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 123333322221 1111 13578899999999999999999988654
No 54
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.83 E-value=7e-20 Score=111.73 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=84.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.. ...+..+ +.
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~ 140 (206)
T 2bcg_Y 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKE-FA 140 (206)
T ss_dssp CCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH
T ss_pred eCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH
Confidence 899999999999999999999999999999999999989988886532 2578999999999997632 2222222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 141 ----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 141 ----DANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp ----HHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11345789999999999999999998754
No 55
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=4.5e-20 Score=111.59 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=81.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||||+++++.++..++.++|++++|+|++++.+++... .|+..+... ..++|+++++||+|+.+.
T Consensus 72 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 149 (194)
T 2atx_A 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKE 149 (194)
T ss_dssp CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTC
T ss_pred ECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccC
Confidence 89999999999999999999999999999999998886 788877653 247999999999999653
Q ss_pred --CCHHHHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+..+... ..++ +++++||+++.|++++|+++.+.+
T Consensus 150 ~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 150 KPICVEQGQKLAK-----EIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CCCCHHHHHHHHH-----HHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHH-----HcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 12221111110 1122 689999999999999999998764
No 56
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.83 E-value=1.7e-21 Score=119.78 Aligned_cols=106 Identities=18% Similarity=0.305 Sum_probs=84.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.......++|+++|+||+|+.+. ....+..+...
T Consensus 90 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~ 169 (217)
T 2f7s_A 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD 169 (217)
T ss_dssp EEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH
Confidence 7999999999999999999999999999999999988899888865433367999999999998653 22222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 170 -----~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 170 -----KYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -----HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----HCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 1235689999999999999999998754
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=1.9e-20 Score=110.67 Aligned_cols=105 Identities=23% Similarity=0.335 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+.. ...+..+ +..
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~ 135 (170)
T 1g16_A 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEA-LAK 135 (170)
T ss_dssp CCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHH-HHH
T ss_pred eCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHH-HHH
Confidence 899999999999999999999999999999888888888988876532 2578999999999985432 2222221 111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 136 ----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 136 ----ELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp ----HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998754
No 58
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.83 E-value=3e-20 Score=109.19 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=84.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ...+..+ +..
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~ 135 (166)
T 2ce2_X 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQD-LAR 135 (166)
T ss_dssp ECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHH-HHH
T ss_pred ECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHH-HHH
Confidence 89999999999999999999999999999998998888888887654333479999999999987532 2222222 111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 136 ----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 136 ----SYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ----HHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998765
No 59
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.6e-21 Score=117.82 Aligned_cols=105 Identities=18% Similarity=0.293 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.. ...+... +.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~ 155 (191)
T 3dz8_A 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQL-LA 155 (191)
T ss_dssp CHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHH-HH
T ss_pred eCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH
Confidence 899999999999999999999999999999999998888988886532 3578999999999986532 2222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++|+++.+.+
T Consensus 156 ~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 156 E----QLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp H----HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H----HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 1234789999999999999999998764
No 60
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.83 E-value=3.8e-21 Score=115.43 Aligned_cols=105 Identities=21% Similarity=0.324 Sum_probs=84.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+. ....+..+..
T Consensus 65 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~- 142 (186)
T 2bme_A 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA- 142 (186)
T ss_dssp EECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-
T ss_pred eCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-
Confidence 799999999999999999999999999999999998888988775432 257899999999998643 2223322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 143 ----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 143 ----QENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp ----HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 12346899999999999999999998754
No 61
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=2.9e-20 Score=113.18 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=76.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCC-C--CCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPD-A--MKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~-~--~~~~~~~~ 75 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+..... ..++|+++|+||+|+.+ . ....+..+
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~ 158 (208)
T 2yc2_C 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQD 158 (208)
T ss_dssp ETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHH
Confidence 8999999999999999999999999999999999999999988865432 14789999999999975 2 33333322
Q ss_pred HhCCCccCCCCeEEEeccccC-CCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATT-ADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~-~~~i~~~~~~l~~~~ 111 (113)
... ..+++++++||++ +.|++++|+++.+.+
T Consensus 159 ~~~-----~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 159 WAT-----TNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHH-----HTTCEEEECCC-------CHHHHHHHHHH
T ss_pred HHH-----HcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 211 1236799999999 999999999998754
No 62
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.83 E-value=2.3e-21 Score=115.64 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.++.....|+..+... ..++|+++|+||+|+.+.. ...+......
T Consensus 64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (181)
T 3tw8_B 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAG 141 (181)
T ss_dssp EETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHH
Confidence 79999999999999999999999999999999999988999888653 3579999999999986532 2222221111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 142 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 142 -----QMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp -----HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998754
No 63
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.82 E-value=4.6e-21 Score=115.58 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+.. ...+..+...
T Consensus 77 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (189)
T 2gf9_A 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD 155 (189)
T ss_dssp ECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred eCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH
Confidence 899999999999999999999999999999989988888988886532 2578999999999986532 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 156 -----~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 156 -----DLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp -----HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234799999999999999999998764
No 64
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.7e-21 Score=118.89 Aligned_cols=105 Identities=17% Similarity=0.316 Sum_probs=81.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++|+||+|+.+. ....+..+. .
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-~ 145 (223)
T 3cpj_B 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTF-A 145 (223)
T ss_dssp CCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHH-H
T ss_pred ECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHH-H
Confidence 899999999999999999999999999999999999999998886532 257899999999998653 233332221 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 146 ----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 146 ----QENQLLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp ----HHTTCEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998765
No 65
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.82 E-value=1.3e-20 Score=114.33 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=80.9
Q ss_pred CCCCccCchhhH---HhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HH
Q psy17510 1 DVGGQDKIRPLW---RHYYTGTQGLIFVVDCADR--DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PH 71 (113)
Q Consensus 1 D~~G~~~~~~~~---~~~~~~~~~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~ 71 (113)
||||+++|..+. ..++.++|++|+|||++++ .++.....|+..+... ..+.|+++|+||+|+.+... ..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~ 152 (196)
T 3llu_A 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQR 152 (196)
T ss_dssp ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHH
T ss_pred ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHh
Confidence 899999998776 8899999999999999986 5666667777776432 35899999999999865211 11
Q ss_pred HHHH----HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQE----KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~----~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++.. .+........++++++|||++ .|++++|+.+++.+
T Consensus 153 ~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 153 DIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2221 222222224678999999999 99999999998865
No 66
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.82 E-value=2.8e-20 Score=110.04 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=77.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+. ...++..+...
T Consensus 61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (170)
T 1z08_A 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE 139 (170)
T ss_dssp ECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence 899999999999999999999999999999989998888888775431 246899999999998653 23333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 140 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 140 -----SVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp -----HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 1346789999999999999999998765
No 67
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.82 E-value=7.2e-21 Score=115.01 Aligned_cols=105 Identities=16% Similarity=0.292 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.++.....|+..+.... ..++|+++++||+|+.+. ....+.... .
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~ 157 (193)
T 2oil_A 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMF-A 157 (193)
T ss_dssp EESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-H
T ss_pred eCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHH-H
Confidence 799999999999999999999999999999989988889998886542 257899999999998653 222322221 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 158 ----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 158 ----ENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp ----HHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998754
No 68
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.82 E-value=7.8e-21 Score=115.67 Aligned_cols=105 Identities=17% Similarity=0.270 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++|+|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.. ...+..+...
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (203)
T 1zbd_A 63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD 141 (203)
T ss_dssp EECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH
T ss_pred ECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence 799999999999999999999999999999989998888988886532 2578999999999997632 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|++|.+.+
T Consensus 142 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 142 -----HLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp -----HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -----HCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234789999999999999999998654
No 69
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.82 E-value=1.6e-20 Score=115.57 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHH-HHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE-ARQELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||+|++++..++..++.++|++|+|||++++.++.. ...|+..+... ..+.|+++|+||+|+.+.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 158 (214)
T 3q3j_B 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQ 158 (214)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTC
T ss_pred ECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhccccc
Confidence 799999999999999999999999999999999998 57888888654 257999999999998642
Q ss_pred --CCHHHHHHHhCCCccCCCCe-EEEeccccCCCC-HHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRNW-YVQPSCATTADG-LYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~-i~~~~~~l~~~~ 111 (113)
....+..+. . ...++ ++++|||+++.| ++++|+++++.+
T Consensus 159 ~~v~~~~~~~~-~----~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 159 APISYEQGCAI-A----KQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp CCCCHHHHHHH-H----HHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHH-H----HHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 222222111 1 11234 689999999998 999999998764
No 70
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=8e-21 Score=116.81 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=83.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+. ...... ..+.
T Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~ 144 (218)
T 4djt_A 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLV-MEVL 144 (218)
T ss_dssp EECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHH-HHHT
T ss_pred ecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHH-HHHH
Confidence 899999999999999999999999999999999988888888875532 245899999999998753 222222 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 145 ----~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 145 ----KGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp ----TTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ----HHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 23456899999999999999999998764
No 71
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=112.41 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=84.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++|+||+|+.+.. ...+..+ +.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~ 158 (192)
T 2il1_A 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEK-FA 158 (192)
T ss_dssp EECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHH-HH
T ss_pred eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHH-HH
Confidence 799999999999999999999999999999989988888887775432 2578999999999986532 2333222 22
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ..+++++++||+++.|++++|+++.+.+
T Consensus 159 ~~---~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 159 QQ---ITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp HT---STTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred Hh---cCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 1256899999999999999999998764
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=6.1e-20 Score=110.59 Aligned_cols=106 Identities=17% Similarity=0.266 Sum_probs=73.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~- 153 (190)
T 3con_A 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK- 153 (190)
T ss_dssp ECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-
T ss_pred ECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-
Confidence 8999999999999999999999999999999898888888887765433357899999999998652 23333222211
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 154 ----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 154 ----SYGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp ----HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998754
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=1.6e-19 Score=109.31 Aligned_cols=103 Identities=23% Similarity=0.338 Sum_probs=83.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC-CCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD-AMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.++.....|+..+... .+.|+++|+||+|... .....+..+...
T Consensus 99 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~- 174 (208)
T 3clv_A 99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEVQKYAQ- 174 (208)
T ss_dssp ECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHHHHHHH-
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHHHHHHH-
Confidence 89999999999999999999999999999998999888999888654 3499999999999432 233344433222
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 175 ----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 175 ----DNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp ----HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 1345899999999999999999998754
No 74
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.82 E-value=1e-19 Score=108.62 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=74.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc---CCCCCeEEEEEeCCCCCCC---CCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDA---MKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~---~~~~~~~ 74 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ...++|+++++||+|+.+. ....+..
T Consensus 64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~ 143 (182)
T 1ky3_A 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ 143 (182)
T ss_dssp CCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred ECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH
Confidence 899999999999999999999999999999989988888888775432 1257899999999998542 2233332
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.... ...++++++||+++.|++++|+++.+.+
T Consensus 144 ~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 144 ELAKS----LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp HHHHH----TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHh----cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 22110 2345799999999999999999998754
No 75
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.82 E-value=4.9e-20 Score=111.49 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----CCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA----MKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~ 75 (113)
||||++++..++..++.++|++++|+|++++.++... ..|+..+... ..++|+++|+||+|+.+. ....+..+
T Consensus 77 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 154 (194)
T 3reg_A 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDD 154 (194)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHH
T ss_pred ECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHH
Confidence 8999999999999999999999999999999999886 6677776543 357999999999998642 22322222
Q ss_pred HhCCCccCCCCeE-EEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWY-VQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... ..+++ ++++||+++.|++++|+++.+.+
T Consensus 155 ~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 155 LCQ-----KLGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp HHH-----HHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHH-----hcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 111 11233 88999999999999999998765
No 76
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.82 E-value=3.8e-21 Score=117.12 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++++||+|+.+. ....+..+..
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~- 157 (200)
T 2o52_A 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA- 157 (200)
T ss_dssp CCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-
T ss_pred cCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-
Confidence 899999999999999999999999999999999998889988876532 257899999999998643 2222322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 158 ----~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 158 ----QENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp ----HHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998754
No 77
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.82 E-value=4.9e-21 Score=114.14 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=81.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCe-EEEEEeCCCCCCC--CCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAI-ILIFANKQDLPDA--MKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~ilv~nK~D~~~~--~~~~~~~~~ 76 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+..... ..+.| +++++||+|+.+. ...++..+.
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 141 (178)
T 2hxs_A 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF 141 (178)
T ss_dssp ECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred ECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH
Confidence 8999999999999999999999999999999898888888887754210 12445 8999999998653 223222221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ..+++++++||+++.|++++|+++.+.+
T Consensus 142 ~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 142 CQ-----ENGFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp HH-----HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HH-----HcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 1235789999999999999999998765
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.82 E-value=5e-20 Score=110.08 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-----------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAM----------- 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----------- 68 (113)
||||+++++.++..++.++|++++|+|++++.+++... .|+..+... ..++|+++++||+|+.+..
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 139 (182)
T 3bwd_D 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVP 139 (182)
T ss_dssp CCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCC
T ss_pred ECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCC
Confidence 89999999999999999999999999999999998886 688777553 2478999999999985431
Q ss_pred -CHHHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 -KPHEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 -~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+..+ +. ...+ .+++++||+++.|++++|+++.+.+
T Consensus 140 v~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 140 ITTVQGEE-LK----KLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CCHHHHHH-HH----HHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHH-HH----HHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1111111 11 0112 3789999999999999999998765
No 79
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=4.8e-21 Score=114.12 Aligned_cols=106 Identities=20% Similarity=0.296 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+.. ...+......
T Consensus 69 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (179)
T 2y8e_A 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 147 (179)
T ss_dssp EECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH
Confidence 799999999999999999999999999999889988888988876532 2578999999999986432 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+++++++||+++.|++++++++.+.+.
T Consensus 148 -----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 148 -----ELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp -----HHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred -----HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 12457999999999999999999988653
No 80
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=5.9e-20 Score=111.64 Aligned_cols=106 Identities=21% Similarity=0.321 Sum_probs=81.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC--------CCCHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD--------AMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--------~~~~~~ 72 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++|+||+|+.+ .....+
T Consensus 83 Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~ 161 (199)
T 2p5s_A 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHF 161 (199)
T ss_dssp ECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHH
T ss_pred ECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHH
Confidence 899999999999999999999999999999989998888888775431 24789999999999852 112221
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. +.+. ...+++++++||+++.|++++|+++.+.+.
T Consensus 162 ~-~~~~----~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 162 G-EKLA----MTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp H-HHHH----HHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred H-HHHH----HHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 1111 112457999999999999999999988653
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.81 E-value=4e-20 Score=109.09 Aligned_cols=104 Identities=20% Similarity=0.331 Sum_probs=83.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... .+.|+++++||+|+.+. ....+..+...
T Consensus 60 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1z2a_A 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK 137 (168)
T ss_dssp CCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred cCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence 899999999999999999999999999999988988888988886542 57899999999998653 23333222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 138 -----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 138 -----RLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp -----HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -----HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 1235789999999999999999998764
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.81 E-value=1.5e-21 Score=118.76 Aligned_cols=103 Identities=23% Similarity=0.364 Sum_probs=76.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~ 75 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+... ...+.+
T Consensus 88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~ 166 (199)
T 3l0i_B 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 166 (199)
T ss_dssp CCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH
T ss_pred ECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886542 24789999999999865321 222333
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. .+++++++||+++.|++++|++|.+.+.
T Consensus 167 ~--------~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 167 S--------LGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp T--------TTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred H--------cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2 2346889999999999999999998764
No 83
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=5.9e-21 Score=112.98 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=82.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCC--CHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAM--KPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~ 77 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.+.. ...++|+++++||+|+.+.. ...+... +
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~ 135 (172)
T 2erx_A 57 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-L 135 (172)
T ss_dssp ECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-H
T ss_pred ECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-H
Confidence 899999999999999999999999999999888888888877665421 12478999999999986532 2222211 1
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ...+++++++||+++.|++++++++.+.+.
T Consensus 136 ~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 136 A----RTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp H----HHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred H----HHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 1 112357899999999999999999988653
No 84
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.81 E-value=2.8e-20 Score=122.33 Aligned_cols=111 Identities=24% Similarity=0.424 Sum_probs=80.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---- 66 (113)
|||||++++++|.+|+.+++++|||+|+++ ..++.....|+..+...+...+.|+++++||+|+.+
T Consensus 207 Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~ 286 (362)
T 1zcb_A 207 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQ 286 (362)
T ss_dssp EECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTT
T ss_pred eccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhcc
Confidence 899999999999999999999999999998 678999999999998766567899999999999742
Q ss_pred -------------C-CCHHHHHHHh-----CCCccC-CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 67 -------------A-MKPHEIQEKL-----GLTRIR-DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 67 -------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .+..+..+.. ...... ...+.+++|||+++.|+.++|+++.+.+
T Consensus 287 ~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 287 VVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp TCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 1 2333332221 111111 3467899999999999999999987654
No 85
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=4.8e-19 Score=108.57 Aligned_cols=111 Identities=22% Similarity=0.317 Sum_probs=77.3
Q ss_pred CCCCccCchh-hHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcC--cCCCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy17510 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIIND--REMRDAIILIFANKQDLPDAMKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~-~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~~~~~~~~~~ 76 (113)
||||+++++. ++..|+.++|++++|+|+++.. ++.....++..+... ....++|+++++||+|+.+......+.+.
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 139 (214)
T 2fh5_B 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ 139 (214)
T ss_dssp ECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred ECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHH
Confidence 8999999998 8999999999999999998843 455555544444321 11246899999999999776544332221
Q ss_pred hC-----------------------CCccC-----------CCCeEEEeccccCC------CCHHHHHHHHHhhc
Q psy17510 77 LG-----------------------LTRIR-----------DRNWYVQPSCATTA------DGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~-----------------------~~~~~-----------~~~~~~~~~sa~~~------~~i~~~~~~l~~~~ 111 (113)
+. ..... ...+++++|||+++ .|++++|++|.+.+
T Consensus 140 l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 140 LEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred HHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 00110 11678999999999 99999999998753
No 86
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=9.4e-20 Score=111.44 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=82.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+.. ...+..+ +..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~ 152 (213)
T 3cph_A 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEA-LAK 152 (213)
T ss_dssp CCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHH-HHH
T ss_pred eCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHH-HHH
Confidence 899999999999999999999999999999888888888888876532 2478999999999984322 2222221 111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 153 ----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 153 ----ELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp ----HHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1134689999999999999999998654
No 87
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=5.2e-20 Score=112.14 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=83.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC---CCCCeEEEEEeCCCCCCCC-CHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDAM-KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~-~~~~~~~~ 76 (113)
||||++++..++..++..+|++|+|+|++++.++.....|+..+..... ..++|+++++||+|+.+.. ...+..+.
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 142 (207)
T 1vg8_A 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142 (207)
T ss_dssp EECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH
T ss_pred eCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHH
Confidence 7999999999999999999999999999999888888888877754321 1468999999999987432 23333222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ...+++++++||+++.|++++|++|.+.+
T Consensus 143 ~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 143 CY----SKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp HH----HTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HH----hcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 02455799999999999999999998754
No 88
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=2.3e-20 Score=115.08 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++.++|++++|+|++++.++.....|+..+... ..++|+++|+||+|+.+.....+ ...
T Consensus 70 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~-----~~~ 142 (221)
T 3gj0_A 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAK-----SIV 142 (221)
T ss_dssp EECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGG-----GCC
T ss_pred eCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHH-----HHH
Confidence 79999999999999999999999999999999999988999888664 25789999999999865332111 111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++|+++.+.+
T Consensus 143 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 143 FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp HHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1122345799999999999999999998764
No 89
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=8.6e-20 Score=110.50 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=81.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCeEEEEEeCCCCCCC-CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDA-MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+. ....+... +.
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~ 140 (199)
T 2gf0_A 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-VA 140 (199)
T ss_dssp ECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-HH
T ss_pred eCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-HH
Confidence 8999999999999999999999999999998888887777665543211 246899999999998753 22222221 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++++++.+.+
T Consensus 141 ~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 141 Q----EWKCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp H----HHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred H----HhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 1 1235789999999999999999998765
No 90
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.81 E-value=2.3e-20 Score=114.01 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||||++++..++..++.++|++++|+|++++.+++... .|+..+.... .++|+++|+||+|+.+.....+.......
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 4gzl_A 84 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKL 161 (204)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred ECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhcccc
Confidence 89999999999999999999999999999999998886 7777775532 57999999999998653211111111100
Q ss_pred C---------ccCC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 T---------RIRD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~---------~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .... ...+++++||+++.|++++|+++.+.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0 0001 123699999999999999999998764
No 91
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.81 E-value=2.6e-19 Score=108.96 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=81.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG- 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~- 78 (113)
||||++++..++..++.++|++++|+|++++.+++.. ..|+..+... ..++|+++++||+|+.+.....+......
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 156 (201)
T 2gco_A 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQ 156 (201)
T ss_dssp CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTC
T ss_pred ECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhccccc
Confidence 8999999999999999999999999999999888888 5677766542 25789999999999865311111110000
Q ss_pred --------CCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 --------LTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 --------~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......+. +++++||+++.|++++++++.+.+
T Consensus 157 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 157 EPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000011223 789999999999999999998764
No 92
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=8.4e-21 Score=115.10 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=83.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++ ..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 82 Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 160 (196)
T 2atv_A 82 DTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT 160 (196)
T ss_dssp ECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 8999998 88889999999999999999999999988888888765433467899999999998653 22222222111
Q ss_pred CCccCCCCeEEEeccccCCC-CHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTAD-GLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~-~i~~~~~~l~~~~ 111 (113)
..+++++++||+++. |++++|+++.+.+
T Consensus 161 -----~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 161 -----ELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp -----HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred -----HhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 124579999999999 9999999998764
No 93
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=110.37 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=81.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||||+++++.++..++.++|++++|+|++++.++.... .|+..+... ..++|+++|+||+|+.+.
T Consensus 74 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 151 (201)
T 2q3h_A 74 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKE 151 (201)
T ss_dssp ECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred ECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhccccc
Confidence 89999999999999999999999999999999999886 688877553 247999999999998642
Q ss_pred --CCHHHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+... +.. ..+ +++++|||+++.|++++|+++.+.+
T Consensus 152 ~~v~~~~~~~-~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 152 KPVPEEAAKL-LAE----EIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp CCCCHHHHHH-HHH----HHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHH-HHH----hcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 11111111 110 112 3789999999999999999998754
No 94
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.80 E-value=1.5e-20 Score=115.21 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=79.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCC----------C
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAM----------K 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----------~ 69 (113)
||||+++|+.++..++.++|++++|+|++++.+++... .|+..+... ..+.|+++++||+|+.+.. .
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~ 140 (212)
T 2j0v_A 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVIT 140 (212)
T ss_dssp CCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCC
T ss_pred ECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCC
Confidence 89999999999999999999999999999999998886 788877553 2479999999999985531 2
Q ss_pred HHHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+ +. ...+ .+++++||+++.|++++|+++.+.+
T Consensus 141 ~~~~~~-~~----~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 141 STQGEE-LR----KQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp HHHHHH-HH----HHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHH-HH----HHcCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 222111 11 0112 3689999999999999999998754
No 95
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.1e-19 Score=109.86 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=81.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++.. ..|+..+... ..++|+++++||+|+.+.....+.......
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 156 (207)
T 2fv8_A 79 DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQ 156 (207)
T ss_dssp ECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTC
T ss_pred ECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhccc
Confidence 8999999999999999999999999999998888888 5677776542 257999999999998653211111111110
Q ss_pred Cc---------cCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TR---------IRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~---------~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ....+. +++++||+++.|++++++++.+.+
T Consensus 157 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 157 EPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 001222 789999999999999999998754
No 96
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.80 E-value=7.3e-19 Score=104.83 Aligned_cols=102 Identities=7% Similarity=0.056 Sum_probs=74.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--cCCCCCeEEEEEeCCCCCC----CCCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND--REMRDAIILIFANKQDLPD----AMKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~----~~~~~~~~ 74 (113)
||||+++ ..|+.++|++++|||++++.+++....|+..+... ....++|+++++||+|+.+ .....+..
T Consensus 60 Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~ 134 (178)
T 2iwr_A 60 EEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARAR 134 (178)
T ss_dssp ECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHH
T ss_pred ECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHH
Confidence 7999987 35778899999999999999999988865444322 1125789999999999842 22333332
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.... ..+++++++||+++.|++++|+++.+.+
T Consensus 135 ~~~~~----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 135 ALXAD----MKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp HHHHH----HSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHh----hcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 22110 1246799999999999999999998754
No 97
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=111.47 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=67.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG- 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~- 78 (113)
||||++++..++..++.++|++++|+|++++.+++... .|+..+... ..++|+++|+||+|+.+.....+..+...
T Consensus 88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 165 (214)
T 2j1l_A 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGL 165 (214)
T ss_dssp EC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTC
T ss_pred ECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhccccc
Confidence 89999999999999999999999999999999998886 688777543 25789999999999865321111110000
Q ss_pred --------CCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 --------LTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 --------~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......++ +++++||+++.|++++|+++.+.+
T Consensus 166 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 166 EPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 000011233 799999999999999999998754
No 98
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.80 E-value=2.4e-19 Score=116.14 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=77.1
Q ss_pred CCCCccCchh---hHHhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HH
Q psy17510 1 DVGGQDKIRP---LWRHYYTGTQGLIFVVDCADR--DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PH 71 (113)
Q Consensus 1 D~~G~~~~~~---~~~~~~~~~~~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~ 71 (113)
|||||++|+. ++..|+++++++|+|||.+++ ........|+..+... .+++|+++++||+|+.+... .+
T Consensus 52 DTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R 129 (331)
T 3r7w_B 52 ELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQR 129 (331)
T ss_dssp ECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHH
T ss_pred ECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHH
Confidence 8999999975 468999999999999999986 2333333344444322 25799999999999975321 12
Q ss_pred HHHHHhCCCccC----CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIR----DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~----~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++....+....+ ..++++++|||++ .++.+.|..+++.+
T Consensus 130 ~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 130 DIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp HHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 344433333332 2578999999998 58999999998765
No 99
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.80 E-value=2.2e-19 Score=107.54 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=81.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||||+++++.++..++..+|++++|+|++++.++.... .|+..+... ..++|+++++||+|+.+.....+.......
T Consensus 59 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 136 (186)
T 1mh1_A 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL 136 (186)
T ss_dssp CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred ECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhccccc
Confidence 89999999999999999999999999999998898886 687777553 247899999999998653111111000000
Q ss_pred ---------CccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 ---------TRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ---------~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......+ ++++++||+++.|++++|+++.+.+
T Consensus 137 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 137 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 0001123 3799999999999999999998765
No 100
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.80 E-value=7.4e-21 Score=114.76 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=78.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCC--CCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDA--MKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~--~~~~~~~~~ 76 (113)
||+|+++++.+ ..++..+|++++|||++++.+++....|+..+..... ..++|+++++||+|+.+. .+..+..+.
T Consensus 75 Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 153 (187)
T 3c5c_A 75 DTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL 153 (187)
T ss_dssp ECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred ECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHH
Confidence 89999999886 5699999999999999999999999999888865311 147899999999998643 233322221
Q ss_pred hCCCccCCCCeEEEeccc-cCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCA-TTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa-~~~~~i~~~~~~l~~~~ 111 (113)
.. ..+++++++|| +++.|++++|+++++.+
T Consensus 154 ~~-----~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 154 AG-----RFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HH-----HHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred HH-----HcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 11 12357899999 89999999999998765
No 101
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.80 E-value=1.3e-20 Score=123.62 Aligned_cols=111 Identities=19% Similarity=0.328 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
||+||++++++|.+|+.+++++|+|+|++ +..+++....|+..+...+...+.|+++++||+|+.+.
T Consensus 189 DtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~ 268 (354)
T 2xtz_A 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL 268 (354)
T ss_dssp EECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTT
T ss_pred ECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcc
Confidence 89999999999999999999999999998 67889999999999987655578999999999997321
Q ss_pred -CC----------------H--HHHHHHh-CCCc-----------cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 -MK----------------P--HEIQEKL-GLTR-----------IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 -~~----------------~--~~~~~~~-~~~~-----------~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. . .+-...+ ...+ .....+.+++|||+++.|++++|+++.+.+
T Consensus 269 ~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 269 DVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETL 343 (354)
T ss_dssp TSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHH
Confidence 10 0 0111111 1000 002346779999999999999999988654
No 102
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.79 E-value=6.4e-20 Score=111.18 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=77.8
Q ss_pred CCCCccC-chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDK-IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~-~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
||+|++. ++.++..|+..++++++|||++++.+++....|+..+.......++|+++++||+|+.+. ....+. ..+
T Consensus 62 Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~ 140 (192)
T 2cjw_A 62 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX 140 (192)
T ss_dssp CCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH
T ss_pred EeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH
Confidence 7888776 556777888999999999999999999998888877754322357899999999998542 222221 111
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...++++++|||++|.|++++|+++++.+
T Consensus 141 a----~~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 141 A----VVFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp H----HHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H----HHhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 1 11235789999999999999999998764
No 103
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.79 E-value=2e-19 Score=108.02 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=80.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||||+++|..++..++.++|++++|+|++++.+++.. ..|+..+... ..+.|+++++||+|+.+.
T Consensus 61 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 138 (184)
T 1m7b_A 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQ 138 (184)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred ECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhccc
Confidence 7999999999999999999999999999999999888 5787777543 257899999999998642
Q ss_pred --CCHHHHHHHhCCCccCCCCeEEEecccc-CCCCHHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRNWYVQPSCAT-TADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~~~~~l~~~~ 111 (113)
.+.++..+ +... ...+++++|||+ ++.|++++|+++.+.+
T Consensus 139 ~~v~~~~~~~-~~~~---~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 139 TPVSYDQGAN-MAKQ---IGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CCCCHHHHHH-HHHH---HTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH-HHHH---cCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 22222111 1100 012479999999 6899999999998764
No 104
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.78 E-value=2.3e-19 Score=116.41 Aligned_cols=111 Identities=23% Similarity=0.437 Sum_probs=86.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
||+||++++++|.+|+.+++++|+|+|++ +..++.....|+..+...+...++|+++++||+|+.+.
T Consensus 173 DtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~ 252 (327)
T 3ohm_A 173 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIM 252 (327)
T ss_dssp EECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTT
T ss_pred EcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhc
Confidence 89999999999999999999999999664 56789999999999988766678999999999997431
Q ss_pred ---------------CCHHHHHH----HhC-CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 ---------------MKPHEIQE----KLG-LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 ---------------~~~~~~~~----~~~-~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.++..+ .+. ........+.+++|||+++.|++.+|..+.+.+
T Consensus 253 ~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 253 YSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp TSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 12222222 111 111233567899999999999999999887653
No 105
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.78 E-value=4.6e-20 Score=122.43 Aligned_cols=111 Identities=25% Similarity=0.352 Sum_probs=85.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
||+||++++++|.+|+.+++++|||+|+++ ..++.....|+..+...+...+.|+++++||+|+.+.
T Consensus 223 DtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~ 302 (402)
T 1azs_C 223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVL 302 (402)
T ss_dssp EECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHH
T ss_pred ccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhc
Confidence 899999999999999999999999999998 7899999999999987655678999999999997321
Q ss_pred --C-C-------------------------HHHHHHHh-----CCCc----cCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 68 --M-K-------------------------PHEIQEKL-----GLTR----IRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 68 --~-~-------------------------~~~~~~~~-----~~~~----~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
. . ..+.+..+ .... -....+.+++|||+++.|+.++|.++...
T Consensus 303 ~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 303 AGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp HCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHH
Confidence 0 0 01111111 1000 01135778999999999999999988764
Q ss_pred c
Q psy17510 111 H 111 (113)
Q Consensus 111 ~ 111 (113)
+
T Consensus 383 I 383 (402)
T 1azs_C 383 I 383 (402)
T ss_dssp H
T ss_pred H
Confidence 3
No 106
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.78 E-value=4.5e-19 Score=108.49 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=80.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||||+++|..++..++.++|++|+|||++++.+++.. ..|+..+... ..+.|+++|+||+|+.+.
T Consensus 82 Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 159 (205)
T 1gwn_A 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQ 159 (205)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred eCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhccccc
Confidence 7999999999999999999999999999999999888 6788777543 257899999999998642
Q ss_pred --CCHHHHHHHhCCCccCCCCeEEEecccc-CCCCHHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRNWYVQPSCAT-TADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~~~~~l~~~~ 111 (113)
.+.++..+ +... ...+++++|||+ ++.|++++|+++.+.+
T Consensus 160 ~~v~~~~~~~-~~~~---~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 160 TPVSYDQGAN-MAKQ---IGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CCCCHHHHHH-HHHH---HTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH-HHHH---cCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 22221111 1100 012478999999 6899999999998754
No 107
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=8.5e-20 Score=109.79 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=80.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||+|+++|..++..|+.+++++++|+|.+++ .+++....|+..+... ..+.|+++|+||+|+.+.............
T Consensus 62 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 139 (184)
T 2zej_A 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITK 139 (184)
T ss_dssp EECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHH
Confidence 7999999999999999999999999999986 4788888898887543 247899999999998653222111111111
Q ss_pred CccCCCCe----EEEeccccCCC-CHHHHHHHHHhhc
Q psy17510 80 TRIRDRNW----YVQPSCATTAD-GLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~----~~~~~sa~~~~-~i~~~~~~l~~~~ 111 (113)
......++ +++++||+++. |+.++++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp HTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 11122233 38999999997 9999999887654
No 108
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.64 E-value=1.8e-20 Score=114.23 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=82.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH--------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPH-------- 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-------- 71 (113)
||||++++..++..++.++|++++|+|++++.+++... .|+..+... ..++|+++++||+|+.+.....
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 3th5_A 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL 161 (204)
Confidence 89999999999999999999999999999988888876 677777543 2378999999999986532111
Q ss_pred -HHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 -EIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 -~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+............++ +++++||+++.|++++|+++.+.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 1111111112222344 789999999999999999998754
No 109
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.76 E-value=3.9e-19 Score=115.79 Aligned_cols=111 Identities=25% Similarity=0.392 Sum_probs=86.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
||+||++++++|.+|+.+++++|||+|++ +..++.....|+..+...+...++|+++++||+|+.+.
T Consensus 167 DtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~ 246 (340)
T 4fid_A 167 DVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLT 246 (340)
T ss_dssp ECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHH
T ss_pred cCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcC
Confidence 89999999999999999999999999998 67789999999999988766678999999999997431
Q ss_pred --------------CCHHH----HHHHh------C-CCccCC-----------CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 --------------MKPHE----IQEKL------G-LTRIRD-----------RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --------------~~~~~----~~~~~------~-~~~~~~-----------~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.++ +.+.+ . ...... ..+.+++|||+++.++..+|..+.+.+
T Consensus 247 ~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 247 KVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp HSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHH
Confidence 11222 12222 1 111111 357899999999999999999887653
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.76 E-value=4.5e-18 Score=101.21 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=76.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
||||++++..++..++..+|++++|+|++++.... ...++..+.. .++|+++++||+|+.+. ...++.+.+..
T Consensus 61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~ 134 (178)
T 2lkc_A 61 DTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQ-TVEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEY 134 (178)
T ss_dssp CCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHH-HHHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTT
T ss_pred ECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhc
Confidence 89999999999999999999999999998743222 2333444422 46899999999999763 33344443321
Q ss_pred Ccc-CC--CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRI-RD--RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~-~~--~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... .. ..++++++||+++.|++++++++.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 135 NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 111 11 237899999999999999999998754
No 111
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.75 E-value=4.8e-19 Score=111.65 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=78.0
Q ss_pred CCCccCchhhHHhhhc---------------------CCcEEEEEEECCCh--hhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 2 VGGQDKIRPLWRHYYT---------------------GTQGLIFVVDCADR--DRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 2 ~~G~~~~~~~~~~~~~---------------------~~~~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
++|+++|+.++..|+. +||++|+|||++++ .+++....|+..+.......++|+++|
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV 204 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV 204 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 4577777777777777 79999999999998 899999899888765312257899999
Q ss_pred EeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 59 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 59 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+||+|+.+....++..+ +... ..+++++++||+++.|++++|+++++.+.
T Consensus 205 ~NK~Dl~~~~~v~~~~~-~~~~---~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 205 LTKCDEGVERYIRDAHT-FALS---KKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EECGGGBCHHHHHHHHH-HHHT---SSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEcccccccHHHHHHHH-HHHh---cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 99999854222221111 1111 13567999999999999999999988653
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=7.8e-18 Score=101.63 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=75.9
Q ss_pred CCCC----------ccCchhhHHhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGG----------QDKIRPLWRHYYTGT---QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G----------~~~~~~~~~~~~~~~---~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
|||| ++.+..++..++..+ |++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+.
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 75 DVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV-QMYEFLKY----YGIPVIVIATKADKIPK 149 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCG
T ss_pred ECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCCh
Confidence 7999 888888888888877 999999999886655543 22222222 46899999999998764
Q ss_pred CCHH----HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 68 MKPH----EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 68 ~~~~----~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.... ++.+.+. ....++++++||+++.|++++++++.+.++
T Consensus 150 ~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 150 GKWDKHAKVVRQTLN----IDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp GGHHHHHHHHHHHHT----CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc----ccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 3332 2222232 124568999999999999999999988764
No 113
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.73 E-value=4.6e-18 Score=110.02 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=80.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.++.... .|+..+... ..++|+++|+||+|+.+.....+.......
T Consensus 209 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 286 (332)
T 2wkq_A 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL 286 (332)
T ss_dssp EECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred eCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhcccccc
Confidence 89999999999999999999999999999998988876 677777543 247999999999998542111010000000
Q ss_pred C---------ccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 T---------RIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~---------~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .....+ +++++|||+++.|++++|+++.+.+
T Consensus 287 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 287 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 0 001123 3799999999999999999998764
No 114
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=1.1e-17 Score=107.73 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=75.7
Q ss_pred ccCchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHhCCC
Q psy17510 5 QDKIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLGLT 80 (113)
Q Consensus 5 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~ 80 (113)
+++|+.+++.|++++|++|+|+|++++. ++.....|+..+.. .++|+++|+||+|+.+.... .+..+.+.
T Consensus 71 qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-- 144 (301)
T 1u0l_A 71 LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-- 144 (301)
T ss_dssp CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT--
T ss_pred ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh--
Confidence 7899999999999999999999999886 68878889887754 47999999999998653221 12222222
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. +++++|||+++.|++++|..+...
T Consensus 145 ---~~-~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 145 ---GL-YPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp ---TT-SCEEECCTTTCTTHHHHHHHHSSS
T ss_pred ---hh-CcEEEEECCCCcCHHHHHHHhcCC
Confidence 12 579999999999999999987653
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.71 E-value=3.4e-17 Score=101.43 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=71.5
Q ss_pred CCCCc------cC----chhhHHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQ------DK----IRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~------~~----~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+ ++ +..+ ..++..+|++++|+|++++.+++ ....|+..+... ..++|+++|+||+|+.+..
T Consensus 82 DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 82 DTPGLLDRAFENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp ECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--
T ss_pred ECCCCcCcccchhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCch
Confidence 89998 44 3333 44678899999999999876643 334677776542 2478999999999987543
Q ss_pred CHHH----HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHE----IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... ..+.+... ....+++++|||+++.|++++|+++.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 159 SLSIDNKLLIKQILDN--VKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp CCCHHHHHHHHHHHHH--CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh--cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 2211 11111110 01226899999999999999999998764
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=2.5e-17 Score=96.49 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
||||++. +...+..++..+|++++|+|.+++.+.. ..++..+... .+.|+++++||+|+.+.. .+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~ 127 (161)
T 2dyk_A 55 DTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LYL 127 (161)
T ss_dssp ECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGC
T ss_pred ECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--HhH
Confidence 7999987 4566777899999999999998753322 2233333222 468999999999986531 111
Q ss_pred HHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ... ..++ +++++||+++.|++++|+++.+.+
T Consensus 128 -~----~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 128 -G----PLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp -G----GGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred -H----HHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 1 111 1223 588999999999999999998875
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.70 E-value=3.5e-17 Score=98.54 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=72.5
Q ss_pred CCCC----------ccCchhhHHhhhcCC---cEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGG----------QDKIRPLWRHYYTGT---QGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G----------~~~~~~~~~~~~~~~---~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
|||| ++.+..++..|+..+ +++++|+|.++..+.. ....|+.. .++|+++|+||+|+.
T Consensus 74 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 74 DLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKV 146 (195)
T ss_dssp ECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGS
T ss_pred ECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcC
Confidence 7899 777888888888877 9999999988653322 22333332 268999999999987
Q ss_pred CCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 66 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+........+...........++++++||+++.|++++|+++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 147 KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 54333222222111000113467999999999999999999988754
No 118
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=1.1e-16 Score=94.60 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=72.0
Q ss_pred CCCCccCch------hhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--C--
Q psy17510 1 DVGGQDKIR------PLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--M-- 68 (113)
Q Consensus 1 D~~G~~~~~------~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~-- 68 (113)
||||++++. .+...|+. +++++++|+|.++.. ....|+..+.+ .++|+++++||+|+.+. .
T Consensus 56 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~ 128 (165)
T 2wji_A 56 DLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEI 128 (165)
T ss_dssp ECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCC
T ss_pred ECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhh
Confidence 899999875 45566665 899999999998743 33457666644 36899999999997432 1
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...++.+.++ ++++++||+++.|++++|+++.+.++
T Consensus 129 ~~~~~~~~~~--------~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 129 DVDKLEKILG--------VKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp CHHHHHHHHT--------SCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC--------CCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 2334444333 35889999999999999999988764
No 119
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.69 E-value=1.8e-17 Score=98.74 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=71.2
Q ss_pred CCCCccCchhh--------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPL--------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++++... ...++..+|++++|+|.+++.+++ ...|+..+.+.. ..++|+++|+||+|+.+..
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~---- 131 (172)
T 2gj8_A 58 DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGET---- 131 (172)
T ss_dssp ECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCC----
T ss_pred ECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcch----
Confidence 79998764321 123688999999999999876655 346666654421 2468999999999984321
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.......+++++++||+++.|++++|+++.+.+.
T Consensus 132 ------~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 132 ------LGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp ------CEEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ------hhhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 1111224568999999999999999999987653
No 120
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.68 E-value=1.6e-16 Score=105.91 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=79.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||+++|...+..++..+|++++|+|+++..+.....+|+..+... ...|+++++||+|+.+..... ++.+.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 89999999999999999999999999999876566666666655432 336999999999987632211 22222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. .....++++++||+++.|+++++++|.+.+
T Consensus 158 l~~--~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 158 TKG--TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHh--hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 211 112467899999999999999999998754
No 121
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.67 E-value=4e-17 Score=105.38 Aligned_cols=108 Identities=23% Similarity=0.239 Sum_probs=76.9
Q ss_pred CCCCccCc-----hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHH---HHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKI-----RPLWRHYYTGTQGLIFVVDCADRDRIDEARQEL---HRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~-----~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++++ ..++..++.++|++++|+|++++.+++....|. ..+... ..++|+++++||+|+.+.....+
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~ 135 (307)
T 3r7w_A 58 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREE 135 (307)
T ss_dssp EECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHH
T ss_pred ECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhH
Confidence 89999998 788899999999999999999998888876654 444322 35799999999999865211110
Q ss_pred ---HHHHhCCCccCCC---CeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 ---IQEKLGLTRIRDR---NWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ---~~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+............ .++++++||++ .|+.++|..+++.+
T Consensus 136 ~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 136 LFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 1111111111112 37899999999 88888988887653
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.67 E-value=2.7e-16 Score=101.53 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=77.9
Q ss_pred CCCCccCch----------hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC-CCCC
Q psy17510 1 DVGGQDKIR----------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP-DAMK 69 (113)
Q Consensus 1 D~~G~~~~~----------~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~ 69 (113)
||||+..+. ..+..++..+|++++|+|+++..+..+...|+..+.. .++|+++++||+|+. +...
T Consensus 65 DTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~ 140 (308)
T 3iev_A 65 DTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKN 140 (308)
T ss_dssp ECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGG
T ss_pred ECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHH
Confidence 899986544 5667789999999999999987777776666777754 468999999999986 3332
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+.+.... ....+++++||+++.|++++++++.+.+
T Consensus 141 ~~~~~~~l~~~~--~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 141 VLPLIDEIHKKH--PELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp GHHHHHHHHHHC--TTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc--cCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 223322222111 1234689999999999999999998765
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.66 E-value=8.1e-17 Score=99.11 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=71.9
Q ss_pred CCCC----------ccCchhhHHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGG----------QDKIRPLWRHYYTG---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G----------~~~~~~~~~~~~~~---~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
|||| ++.+..++..|+.. +|++++|+|.+++.+ .....++..+.. .++|+++|+||+|+.+.
T Consensus 85 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~----~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 85 DLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP----TGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp ECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG----GCCCEEEEEECGGGSCH
T ss_pred cCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh----cCCCEEEEEeccccCCh
Confidence 8999 45567777777776 778999999987533 222345555533 46899999999998653
Q ss_pred CCHHHHH----HHhCCC--ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 68 MKPHEIQ----EKLGLT--RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 68 ~~~~~~~----~~~~~~--~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
....... +.+... ......++++++||+++.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 160 QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 2221111 111110 00125678999999999999999999987653
No 124
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.65 E-value=1.3e-16 Score=96.92 Aligned_cols=105 Identities=20% Similarity=0.331 Sum_probs=81.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|+++++.++..++..++++++|+|.++..+++....|+..+... ...+.|+++++||+|+.+.. ...+ ...+.
T Consensus 60 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~-a~~l~ 137 (199)
T 2f9l_A 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE-ARAFA 137 (199)
T ss_dssp ECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHH-HHHHH
T ss_pred ECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHH-HHHHH
Confidence 78999999999999999999999999999988888877888776432 12468999999999986532 2222 22221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++.++++||+++.|++++++++.+.+
T Consensus 138 ----~~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 138 ----EKNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp ----HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12345788999999999999999988754
No 125
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.63 E-value=3.3e-17 Score=98.39 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=72.2
Q ss_pred CCCC-----------ccCchhhHHhhhcC-CcEEEEEEECCChhhHHHH-HHHHHH--------HHcCcCCCCCeEEEEE
Q psy17510 1 DVGG-----------QDKIRPLWRHYYTG-TQGLIFVVDCADRDRIDEA-RQELHR--------IINDREMRDAIILIFA 59 (113)
Q Consensus 1 D~~G-----------~~~~~~~~~~~~~~-~~~vi~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~p~ilv~ 59 (113)
|||| ++++..++..|+.. ++++++++++.+..++... ..|... +.......++|+++++
T Consensus 50 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 129 (190)
T 2cxx_A 50 DMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAV 129 (190)
T ss_dssp ECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEE
T ss_pred ECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEe
Confidence 7899 78888888888877 7766666666655566554 344331 1111112578999999
Q ss_pred eCCCCCCCC--CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 60 NKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 60 nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
||+|+.+.. ..+++.+.++..+. ....+++++||+++.|++++|+++.+.+
T Consensus 130 nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 130 NKLDKIKNVQEVINFLAEKFEVPLS-EIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp ECGGGCSCHHHHHHHHHHHHTCCGG-GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ehHhccCcHHHHHHHHHHHhhhhhh-ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 999987643 13344444443210 0123589999999999999999998764
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.62 E-value=4.9e-16 Score=104.41 Aligned_cols=106 Identities=14% Similarity=0.026 Sum_probs=75.5
Q ss_pred CCCCc----------cCchhhHH-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQ----------DKIRPLWR-HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~----------~~~~~~~~-~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+ ++|..++. .++..+|++++|+|++++.+.++. .|+..+.. .++|+++++||+|+.+...
T Consensus 229 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 229 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp THHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCT
T ss_pred ECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcch
Confidence 78887 55665544 488899999999999987776654 56666643 5799999999999876433
Q ss_pred --HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 --PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++.+............+++++||++|.|++++|+.+.+.+
T Consensus 304 ~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 304 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp THHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 233333222111112356799999999999999999887643
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.61 E-value=3e-15 Score=96.43 Aligned_cols=101 Identities=15% Similarity=0.053 Sum_probs=72.2
Q ss_pred CCCCccC--------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHH-HHHHcCcCCCCCeEEEEEeCCCCCCCCC-H
Q psy17510 1 DVGGQDK--------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQEL-HRIINDREMRDAIILIFANKQDLPDAMK-P 70 (113)
Q Consensus 1 D~~G~~~--------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~ 70 (113)
||||+.+ +......++..+|++++|+|++++.+.. ..|+ +.+... ..++|+++++||+|+.+... .
T Consensus 61 DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~ 136 (301)
T 1wf3_A 61 DTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL--VGKVPILLVGNKLDAAKYPEEA 136 (301)
T ss_dssp ECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--TTTSCEEEEEECGGGCSSHHHH
T ss_pred cCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh--cCCCCEEEEEECcccCCchHHH
Confidence 8999877 4566677899999999999998764433 3444 444321 14789999999999865322 2
Q ss_pred HHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 71 HEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+..+.+ ....+++++||+++.|++++++++.+.+
T Consensus 137 ~~~~~~~------~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 137 MKAYHEL------LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHT------STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHh------cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 2222222 1234689999999999999999998764
No 128
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.60 E-value=3.6e-15 Score=99.50 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=68.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
|||||++|.+.+......+|++++|+|+++........+.+..+... ...|+++++||+|+.+... .+++.+.
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~ 163 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKEF 163 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 89999999998888889999999999998642222233333333221 2358999999999976432 2233333
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+... ....++++++||+++.|+++++++|...+
T Consensus 164 l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 164 VKGT--IAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HTTS--TTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred Hhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2211 12457899999999999999999998754
No 129
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.60 E-value=3.1e-16 Score=107.66 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=73.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++.+..++..++..+|++++|+|+++. +....|+..+... ..++|+++|+||+|+.+.. ..++..+...
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~ 178 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINERFP 178 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHHCG
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHHHH
Confidence 8999999999999999999999999999865 3445677666543 2468999999999997543 3333433322
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 179 -----~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 179 -----AIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp -----GGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred -----hcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 2334699999999999999999998764
No 130
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.60 E-value=1.5e-14 Score=100.30 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=77.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+..|...+..++..+|++++|+|+++....+....|.... . .++|+++++||+|+.+.. ..++.+.+...
T Consensus 79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~ 152 (600)
T 2ywe_A 79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV 152 (600)
T ss_dssp CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh
Confidence 89999999999999999999999999999876655555554443 2 478999999999997643 33322222111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.....+++++||++|.|++++++++++.+.
T Consensus 153 -lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 153 -LGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp -SCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -hCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 1011124789999999999999999987653
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.60 E-value=1.5e-15 Score=102.60 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=74.4
Q ss_pred CCCC----------ccCchhhHH-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGG----------QDKIRPLWR-HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G----------~~~~~~~~~-~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
|||| +++|..++. .++..+|++++|+|+++..+ +....|...+.. .++|+++|+||+|+.+...
T Consensus 249 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 249 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp TGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCS
T ss_pred ECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCch
Confidence 8999 788887765 48899999999999987533 223455555543 5799999999999875432
Q ss_pred --HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 --PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+++.+...........++++++||++|.|++++|+++.+.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 324 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 233333222111112346799999999999999999988654
No 132
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.59 E-value=2.8e-15 Score=89.91 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=72.5
Q ss_pred CCCCccCch------hhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----C
Q psy17510 1 DVGGQDKIR------PLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----M 68 (113)
Q Consensus 1 D~~G~~~~~------~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~ 68 (113)
||||++++. .++..|+. .++++++|+|.++ ++....|+..+.. .+.|+++++||+|+.+. .
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~ 132 (188)
T 2wjg_A 60 DLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEI 132 (188)
T ss_dssp ECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCC
T ss_pred ECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchH
Confidence 899999885 45666764 5999999999875 4555677777754 47899999999997432 1
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++.+.++ ++++++||+++.|++++|+++.+.+
T Consensus 133 ~~~~~~~~~~--------~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 133 DVDKLEKILG--------VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp CHHHHHHHHT--------SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--------CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 2344444443 3588999999999999999998765
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.59 E-value=4.2e-15 Score=100.85 Aligned_cols=97 Identities=18% Similarity=0.089 Sum_probs=62.4
Q ss_pred CCCCccCchhhHH--------hhhcCCcEEEEEEECCChhhHH---HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIRPLWR--------HYYTGTQGLIFVVDCADRDRID---EARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~~~~~--------~~~~~~~~vi~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||++++...++ .++..+|++++|+|++++.++. ....|+..+ .++|+++|+||+|+.+...
T Consensus 287 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 287 DTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANAD 360 (476)
T ss_dssp C--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTH
T ss_pred ECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccc
Confidence 8999988775543 3789999999999999876654 333444443 3689999999999976443
Q ss_pred HHH--HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHE--IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... +.+. ..++++++||+++.|++++++++.+.+
T Consensus 361 ~~~~~l~~~--------~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 361 ALIRAIADG--------TGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp HHHHHHHHH--------HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred hhHHHHHhc--------CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 221 2221 013588999999999999999998764
No 134
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.59 E-value=1.4e-14 Score=100.55 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=77.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
||||+..|...+..++..+|++|+|+|+++..+......|..... .++|+++++||+|+.+.... +++.+.+
T Consensus 77 DTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~~ei~~~l 151 (599)
T 3cb4_D 77 DTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVAEEIEDIV 151 (599)
T ss_dssp ECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHHT
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHHHHHHHHh
Confidence 899999999999999999999999999988655555455544442 46899999999999764321 2333333
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.. ..+++.+||+++.|++++++++.+.+.
T Consensus 152 g~~-----~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 152 GID-----ATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CCC-----CTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred CCC-----cceEEEeecccCCCchhHHHHHhhcCC
Confidence 321 124789999999999999999987653
No 135
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.59 E-value=1.5e-15 Score=104.17 Aligned_cols=105 Identities=14% Similarity=0.063 Sum_probs=76.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
|||||+.|..++..++..+|++++|+|+++..... ..+++..+.. .++|+++++||+|+.+... ..++.+ .
T Consensus 58 DTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~q-t~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~-~ 131 (537)
T 3izy_P 58 DTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQ-TVESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLA-Y 131 (537)
T ss_dssp ECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHH-HHHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHH-T
T ss_pred ECCChHHHHHHHHHHHccCCEEEEEEECCCCccHH-HHHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHh-h
Confidence 89999999999999999999999999998754333 2334444432 4689999999999865321 122222 2
Q ss_pred CCCc-cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTR-IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~-~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... .....++++++||++|.|++++++++...+
T Consensus 132 ~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 132 DVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp TSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred hhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 2111 112357899999999999999999988654
No 136
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.58 E-value=6.5e-16 Score=93.38 Aligned_cols=106 Identities=17% Similarity=0.305 Sum_probs=81.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~ 79 (113)
||+|++++..++..+++.++++++|+|.++..+++....|+..+.... ..+.|+++++||+|+.+... ..+....+.
T Consensus 84 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~- 161 (191)
T 1oix_A 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFA- 161 (191)
T ss_dssp EECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-
T ss_pred ECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-
Confidence 689999999999999999999999999998888887777877664321 24689999999999864322 112222222
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++.++++||+++.|++++++++.+.+
T Consensus 162 ---~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 162 ---EKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ---HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---HHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 12346788999999999999999998764
No 137
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.58 E-value=5.6e-15 Score=93.97 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCCccCch------hhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----C
Q psy17510 1 DVGGQDKIR------PLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----M 68 (113)
Q Consensus 1 D~~G~~~~~------~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~ 68 (113)
||||+.++. .+++.|+. .+|++++|+|+++.. ....|..++.. .++|+++++||+|+.+. .
T Consensus 55 DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~ 127 (272)
T 3b1v_A 55 DLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---RNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKI 127 (272)
T ss_dssp ECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCC
T ss_pred ECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---hHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHH
Confidence 899999886 46666775 699999999998753 33456666644 47899999999997432 2
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++ ++++++||+++.|++++|+++.+.+
T Consensus 128 ~~~~l~~~lg--------~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 128 NVDKLSYHLG--------VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CHHHHHHHHT--------SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred HHHHHHHHcC--------CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 2344444443 4688999999999999999998754
No 138
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.58 E-value=9.6e-15 Score=101.29 Aligned_cols=103 Identities=21% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD---RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~------- 70 (113)
||||++.|..++..++..+|++|+|+|+++ +.+++. +..+.. .++|+++++||+|+.+....
T Consensus 76 DTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~----l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEA----LNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp CCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHH----HHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHH----HHHHHH----cCCeEEEEecccccccccccccCCchH
Confidence 899999999999999999999999999998 444332 233322 47899999999998643210
Q ss_pred -------H-----------HHHHHhCCCcc----------CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 71 -------H-----------EIQEKLGLTRI----------RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 71 -------~-----------~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ++...+....+ ....++++.+||++|.|++++++++...+
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 1 11111111111 02456899999999999999999988643
No 139
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.57 E-value=3.2e-14 Score=96.65 Aligned_cols=98 Identities=20% Similarity=0.260 Sum_probs=72.2
Q ss_pred CCCCcc-Cchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQD-KIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~-~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||++ .+.. ....++..+|++++|+|++++.++++. .+++.+ .++|+++|+||+|+.+..+.+
T Consensus 297 DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l------~~~piivV~NK~DL~~~~~~~ 369 (482)
T 1xzp_A 297 DTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEE 369 (482)
T ss_dssp ESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHH
T ss_pred ECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHHHh------cCCCEEEEEECcccccccCHH
Confidence 899988 6542 234588999999999999887666542 333333 368999999999997655555
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++.+... ..++++++||+++.|++++++++.+.+
T Consensus 370 ~~~~~~~------~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 370 EIKNKLG------TDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp HHHHHHT------CSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred HHHHHhc------CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5544322 224688999999999999999998753
No 140
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.57 E-value=3e-15 Score=94.49 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=70.0
Q ss_pred CCCCccCchh----------hHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQDKIRP----------LWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~~~~~~----------~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+..+.. +.+.|+ ..+|++++|+|+++..+. ..+...+.. .++|+++++||+|+.+..
T Consensus 54 DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~---~~l~~~l~~----~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 54 DLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERH---LYLTSQLFE----LGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp ECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHH---HHHHHHHTT----SCSCEEEEEECHHHHHHT
T ss_pred eCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhH---HHHHHHHHH----cCCCEEEEEEChhcCCcC
Confidence 8999988764 566677 899999999999875333 334444432 378999999999974321
Q ss_pred ----CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 ----KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 ----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....+.+.++ ++++++||+++.|++++++++.+.
T Consensus 127 ~~~~~~~~l~~~lg--------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 127 GISIDTEKLESLLG--------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp TCEECHHHHHHHHC--------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHcC--------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 2334444443 468999999999999999999764
No 141
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.56 E-value=2.9e-15 Score=100.27 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=74.2
Q ss_pred CCCCccCchhh-------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDKIRPL-------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~-------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
||||++.+..+ +..++..+|++++|+|++.. .....|+..+.. .++|+++|+||+|+.+.... +.
T Consensus 89 DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~ 160 (423)
T 3qq5_A 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-EL 160 (423)
T ss_dssp ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HH
T ss_pred ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HH
Confidence 89999877654 45688999999999998432 334566666654 37899999999999765443 33
Q ss_pred HHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.+.. ..+++++++||+++.|++++++++.+.+
T Consensus 161 ~~~l~~----~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 161 KGLYES----RYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp HHHSSC----CTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHHH----HcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 333322 2345789999999999999999999876
No 142
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=2.5e-16 Score=96.69 Aligned_cols=69 Identities=30% Similarity=0.376 Sum_probs=57.9
Q ss_pred CCCCccCchhhHHhhhcC----CcEEEEEEECC-ChhhHHHHHHHHHHHHcCc---CCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTG----TQGLIFVVDCA-DRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~----~~~vi~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+++++.++..|+.. ++++++|+|.+ ++.++.....|+..+.... ...++|+++++||+|+.+...
T Consensus 61 Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp ECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 899999999999988887 89999999999 7788888888888776532 125799999999999977654
No 143
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.55 E-value=1.5e-14 Score=91.34 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=71.5
Q ss_pred CCCCccCchh------hHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----C
Q psy17510 1 DVGGQDKIRP------LWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----M 68 (113)
Q Consensus 1 D~~G~~~~~~------~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~ 68 (113)
||||+..+.. +.+.|+ ..+|++++|+|.++..+ ...|+.++.. .++|+++++||+|+.+. .
T Consensus 58 DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~ 130 (258)
T 3a1s_A 58 DLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILAMTAIDEAKKTGMKI 130 (258)
T ss_dssp ECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCB
T ss_pred ECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEEEECcCCCCccchHH
Confidence 8999988875 335565 58999999999987543 3446666654 47899999999997432 2
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++ ++++++||+++.|++++++++.+.+
T Consensus 131 ~~~~l~~~lg--------~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 131 DRYELQKHLG--------IPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CHHHHHHHHC--------SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 2344555444 4688999999999999999988753
No 144
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.55 E-value=6.5e-15 Score=98.32 Aligned_cols=106 Identities=18% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||||++.|...+......+|++++|+|+++........+.+..+... ...|+++++||+|+.+... .+++.+.
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 165 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKEF 165 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence 89999999988888889999999999998642122223333322211 2358999999999875321 1122222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. .....++++++||+++.|+++++++|.+.+
T Consensus 166 l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 166 IEG--TVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 221 112457899999999999999999998754
No 145
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.54 E-value=6.2e-15 Score=95.01 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=74.7
Q ss_pred CccCchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCcc
Q psy17510 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI 82 (113)
Q Consensus 4 G~~~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 82 (113)
.+++++.+.+.+++++|++++|+|++++. ++.....|+..+.. .++|+++|+||+|+.+........+.. ..+
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~--~~~ 138 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWI--SIY 138 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHH--HHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHH--HHH
Confidence 37888888889999999999999999875 78877888887643 579999999999986531101011111 111
Q ss_pred CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 83 RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 83 ~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+++++++||+++.|++++++.+...
T Consensus 139 ~~~g~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 139 RDAGYDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp HHTTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred HHCCCeEEEEECCCCCCHHHHHhhccCc
Confidence 1234579999999999999999987643
No 146
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.54 E-value=1e-14 Score=92.85 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=69.2
Q ss_pred CCCCccCchh----------hHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQDKIRP----------LWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~~~~~~----------~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+..+.. .++.|+ ..+|++++|+|+++..+. ..|...+.. .++|+++++||+|+.+..
T Consensus 56 DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~----~~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 56 DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp ECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHH----HTCCEEEEEECHHHHHHT
T ss_pred ECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHH---HHHHHHHHh----cCCCEEEEEECccchhhh
Confidence 8999988762 234444 799999999999875433 344444433 268999999999975422
Q ss_pred ----CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 ----KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++ ++++++||++|.|++++++++.+.+
T Consensus 129 ~~~~~~~~l~~~lg--------~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 129 NIRIEIDALSARLG--------CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp TEEECHHHHHHHHT--------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhcC--------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 2334444443 4688999999999999999998765
No 147
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.54 E-value=8.3e-14 Score=95.56 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=50.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+++|...+..++..+|++|+|+|+++...... ..++..+.. .++|+++++||+|+.+.
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t-~~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRT-IKLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 899999999999999999999999999997544443 334444433 47899999999999654
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.53 E-value=7.2e-15 Score=99.88 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=72.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE----IQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~ 76 (113)
||||++.|...+..++..+|++++|+|+++.. .....+++..+.. .++|+++++||+|+.+....+. +.+.
T Consensus 79 DtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~-~~qt~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~ 153 (482)
T 1wb1_A 79 DAPGHADLIRAVVSAADIIDLALIVVDAKEGP-KTQTGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSI 153 (482)
T ss_dssp CCSSHHHHHHHHHHHTTSCCEEEEEEETTTCS-CHHHHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEecCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHH
Confidence 89999999999999999999999999998731 1222333333322 4688899999999875221121 2121
Q ss_pred hCCC-ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLT-RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~-~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+... .+ ..++++++||++|.|+++++++|.+.+
T Consensus 154 l~~~~~~--~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 154 LQSTHNL--KNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp HHHSSSG--GGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred Hhhhccc--ccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 1111 11 146799999999999999999998753
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=4.1e-14 Score=95.14 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=65.3
Q ss_pred CCCCcc--------CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQD--------KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~--------~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++ +++.++..++..||++++|+|++++.+..+ .++..+.+. .++|+++++||+|+.+...
T Consensus 57 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~--- 128 (436)
T 2hjg_A 57 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA--- 128 (436)
T ss_dssp C---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC--------
T ss_pred ECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh---
Confidence 899986 677788889999999999999987655433 344444432 5789999999999864210
Q ss_pred HHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+. ..++ +++++||++|.|+.++++++.+.+
T Consensus 129 ----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 129 ----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp ----CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred ----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 011111 1122 578999999999999999998765
No 150
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=3.3e-14 Score=93.42 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCCCccCch---------hhHHhhhcCCcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIR---------PLWRHYYTGTQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~---------~~~~~~~~~~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+.... .....+...+|++++|+|++++. +++....|+..+.... .++|+++|+||+|+.+...
T Consensus 220 Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~ 297 (357)
T 2e87_A 220 DTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEEN 297 (357)
T ss_dssp ECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHH
T ss_pred eCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHH
Confidence 789975432 12223455799999999998766 6777778888775531 2799999999999865322
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+... ..+++++++||++|.|++++++++.+.+
T Consensus 298 ~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 298 IKRLEKFVK-----EKGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHHHHH-----HTTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----hcCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 222222111 2345688999999999999999998754
No 151
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.53 E-value=3.6e-15 Score=101.53 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=71.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
|||||+.|..++..++..+|++++|+|+++... ....+++..+.. .++|+++++||+|+.+... ..+...+..
T Consensus 57 DTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-~qT~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~ 130 (501)
T 1zo1_I 57 DTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-PQTIEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQY 130 (501)
T ss_dssp CCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-TTTHHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCC
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-HHHHHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHh
Confidence 899999999999999999999999999987321 112223333322 4689999999999865211 111111110
Q ss_pred Ccc-C--CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRI-R--DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~-~--~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
... . ...++++++||++|.|++++++++...
T Consensus 131 ~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 131 GILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred hhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 011 1 124789999999999999999998754
No 152
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.51 E-value=8.4e-14 Score=94.20 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=61.5
Q ss_pred CCCCccCchhhHH--------hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPLWR--------HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~--------~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+...++ .++..+|++++|+|.+++.+... ..|+..+ ..+|+++|+||+|+.+.....
T Consensus 278 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~- 349 (462)
T 3geh_A 278 DTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT- 349 (462)
T ss_dssp C--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST-
T ss_pred ECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH-
Confidence 8999877655433 36889999999999998655443 4555555 347999999999986532211
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+ ....+++++||+++.|++++++++.+.+
T Consensus 350 -----~~~~~-~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 350 -----SLEYP-ENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp -----TCCCC-TTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----HHHHh-ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 11111 1345789999999999999999998764
No 153
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.51 E-value=1.5e-14 Score=94.54 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=74.2
Q ss_pred CCCCc----cCchhhHHhh---hcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQ----DKIRPLWRHY---YTGTQGLIFVVDCAD---RDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~----~~~~~~~~~~---~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+ ..+..+...+ +.+++++++|+|+++ +.+++....|..++.... ...++|+++|+||+|+.+...
T Consensus 212 DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e 291 (342)
T 1lnz_A 212 DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE 291 (342)
T ss_dssp EHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH
T ss_pred cCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH
Confidence 56774 2333444444 455999999999987 677888888888876542 235799999999999865211
Q ss_pred -HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 70 -PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+++.+.+.. .++++++||+++.|++++++++.+.+.
T Consensus 292 ~~~~l~~~l~~------~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 292 NLEAFKEKLTD------DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp HHHHHHHHCCS------CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhhc------CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 1223333221 146889999999999999999987653
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.50 E-value=9.9e-14 Score=91.59 Aligned_cols=102 Identities=7% Similarity=-0.047 Sum_probs=72.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEe-CCCCCCCCCHH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFAN-KQDLPDAMKPH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~D~~~~~~~~----~~~ 74 (113)
||||+++|...+..++..+|++|+|+| +. .......+++..+.. .++|. ++++| |+|+ +....+ ++.
T Consensus 66 DtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~ 138 (370)
T 2elf_A 66 DAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLK 138 (370)
T ss_dssp ECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHH
Confidence 899999998888888999999999999 53 345555666655543 35677 89999 9998 421111 222
Q ss_pred HHhCCCccCCCCeEEEe--ccccC---CCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQP--SCATT---ADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~--~sa~~---~~~i~~~~~~l~~~~ 111 (113)
+.+... ....+++++ +||++ +.|++++++.|.+.+
T Consensus 139 ~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 139 VITSGT--VLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp HHTTTS--TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred HHHHhc--CCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 222211 113578999 99999 999999999887654
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.49 E-value=3.1e-14 Score=94.90 Aligned_cols=106 Identities=21% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC-HH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-PH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~~----~~~ 74 (113)
||||+++|...+..++..+|++|+|+|+++... ....+++..+.. .++| +++++||+|+.+... .+ ++.
T Consensus 81 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~ 155 (405)
T 2c78_A 81 DCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVR 155 (405)
T ss_dssp ECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHH
Confidence 899999999998899999999999999987533 344556655543 3678 899999999874211 11 122
Q ss_pred HHhCCCccCCCCeEEEeccccCCCC------------------HHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADG------------------LYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~------------------i~~~~~~l~~~~ 111 (113)
+.+....+....++++++||+++.| +.++++.+...+
T Consensus 156 ~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 156 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 2221111122346899999999987 778888877654
No 156
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.47 E-value=1.3e-13 Score=92.79 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=66.8
Q ss_pred CCCCccC---------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQDK---------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~~---------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||++. ++.++..++..||++++|+|.+++.+..+ .++..+.+. .++|+++++||+|+.+.. ..
T Consensus 55 DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~ 128 (439)
T 1mky_A 55 DTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-ER 128 (439)
T ss_dssp ECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HH
T ss_pred ECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HH
Confidence 8999775 34567789999999999999987543332 223333221 368999999999974310 11
Q ss_pred HHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+. ..++ +++++||++|.|+.++++++.+.+
T Consensus 129 ~~~~~~~-----~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 129 EVKPELY-----SLGFGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp HTHHHHG-----GGSSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHH-----hcCCCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 1101111 1122 468999999999999999997654
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.47 E-value=1.5e-13 Score=92.34 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=65.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-------HHHHHHHHcCcCCCC-CeEEEEEeCCCCCCC-CCH-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-------RQELHRIINDREMRD-AIILIFANKQDLPDA-MKP- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~-~p~ilv~nK~D~~~~-~~~- 70 (113)
||||+++|...+..++..+|++|+|+|+++ .+++.. .+++..... .+ .|+++++||+|+.+. .+.
T Consensus 90 DtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~----~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 90 DAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT----MGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp CCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH----TTCTTCEEEEECGGGSSSTTCHH
T ss_pred ECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH----cCCCeEEEEEEcccCCCccccHH
Confidence 899999999999999999999999999997 555532 233332222 23 368999999998763 111
Q ss_pred ------HHHHHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 71 ------HEIQEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 71 ------~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
+++.+.+....+....++++++||++|.|+.+
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 12222222111122347899999999999864
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.46 E-value=3.9e-13 Score=90.38 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=66.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHh-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKL- 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~- 77 (113)
||||+++|...+..++..+|++++|+|+++... ....+++..+... ...|+++++||+|+.+... ..++.+..
T Consensus 110 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~ 185 (434)
T 1zun_B 110 DTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFESIKADYL 185 (434)
T ss_dssp ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHHHHHHHHHH
Confidence 899999999998889999999999999987532 3334444444321 2247999999999975211 11111111
Q ss_pred ---CCCccCCCCeEEEeccccCCCCHHHH
Q psy17510 78 ---GLTRIRDRNWYVQPSCATTADGLYEG 103 (113)
Q Consensus 78 ---~~~~~~~~~~~~~~~sa~~~~~i~~~ 103 (113)
.........++++++||++|.|+.++
T Consensus 186 ~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 186 KFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 11110123478999999999998863
No 159
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.45 E-value=2.2e-13 Score=91.69 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=67.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh---H---HHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCC-C---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---I---DEARQELHRIINDREMRDAI-ILIFANKQDLPDAM-K--- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~-~--- 69 (113)
|||||++|...+..++..+|++++|+|+++... + ....+.+..+.. .++| +++++||+|+.+.. +
T Consensus 101 DTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~~~ 176 (439)
T 3j2k_7 101 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSNER 176 (439)
T ss_pred ECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHHHH
Confidence 899999999999999999999999999987432 1 133333333332 3566 99999999985421 1
Q ss_pred HHHHHHH----hCCCccC-CCCeEEEeccccCCCCHHHHHH
Q psy17510 70 PHEIQEK----LGLTRIR-DRNWYVQPSCATTADGLYEGLT 105 (113)
Q Consensus 70 ~~~~~~~----~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~ 105 (113)
.+++.+. +....+. ...++++++||++|.|+.++.+
T Consensus 177 ~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 177 YEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1112121 1111111 1257899999999999998544
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.45 E-value=8.7e-14 Score=92.58 Aligned_cols=106 Identities=18% Similarity=0.102 Sum_probs=72.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC-H----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-P----HEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~----~~~~ 74 (113)
||||+++|...+..++..+|++|+|+|+++... ....+++..+.. .++| +++++||+|+.+... . .++.
T Consensus 72 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~ 146 (397)
T 1d2e_A 72 DCPGHADYVKNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIR 146 (397)
T ss_dssp ECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-HHHHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHH
Confidence 899999999888889999999999999987432 233344444432 4678 789999999864211 1 1222
Q ss_pred HHhCCCccCCCCeEEEeccccCCCC----------HHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADG----------LYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~----------i~~~~~~l~~~~ 111 (113)
+.+....+....++++++||+++.| +.++++.+.+.+
T Consensus 147 ~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 2221111222356899999999764 889999887654
No 161
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.45 E-value=6e-13 Score=84.41 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCCCccCchh------hHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----CC
Q psy17510 1 DVGGQDKIRP------LWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD----AM 68 (113)
Q Consensus 1 D~~G~~~~~~------~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~ 68 (113)
||||+..+.. .++.|+ .++|++++|+|+++. .....|+.++... ..+|+++++||+|+.+ ..
T Consensus 56 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~ 129 (271)
T 3k53_A 56 DLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKI 129 (271)
T ss_dssp ECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCC
T ss_pred eCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHH
Confidence 8999988876 566676 689999999999874 3344555555442 2389999999999643 12
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++ ++++++||+++.|+.++++++.+.+
T Consensus 130 ~~~~l~~~lg--------~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 130 DIKKMRKELG--------VPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp CHHHHHHHHS--------SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3445555544 4588999999999999999988653
No 162
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.45 E-value=4e-13 Score=90.43 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=66.2
Q ss_pred CCCCccCchhhH------------HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQDKIRPLW------------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~~~~~~~~------------~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+++..... ..++..+|++++|+|.++..+..+ ..+...+.. .++|+++++||+|+.+..
T Consensus 234 Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~----~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 234 DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER----RGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp SCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCEEEEEEECGGGSTTG
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCCch
Confidence 789985543321 346788999999999987555443 223333322 578999999999986532
Q ss_pred --CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 --KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 --~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...++.+............+++++||++|.|++++++.+.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 309 EKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp GGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 233333322211111234579999999999999999988764
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.43 E-value=4.1e-13 Score=90.75 Aligned_cols=99 Identities=20% Similarity=0.169 Sum_probs=67.1
Q ss_pred CCCC--------ccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGG--------QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G--------~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
|||| +++++.++..++..+|++++|+|..+.. .....++..+.+. .++|+++++||+|+.+.. ..
T Consensus 77 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~ 149 (456)
T 4dcu_A 77 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV--TAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--AN 149 (456)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCS--CHHHHHHHHHHTT---CCSCEEEEEECC----------
T ss_pred ECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hh
Confidence 8999 7888888999999999999999987642 2333455555443 579999999999975421 01
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. . .+........+.+||+++.|+.++++++.+.+
T Consensus 150 ~----~-e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 150 I----Y-DFYSLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -----C-CSGGGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred H----H-HHHHcCCCceEEeecccccchHHHHHHHHhhc
Confidence 1 1 11111111356999999999999999998754
No 164
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.8e-13 Score=82.37 Aligned_cols=77 Identities=31% Similarity=0.425 Sum_probs=61.5
Q ss_pred CCCCccCchhhHHhhhcC----CcEEEEEEECC-ChhhHHHHHHHHHHHHcCc---CCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTG----TQGLIFVVDCA-DRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~----~~~vi~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+...+..++.. +|++++|+|++ ++.++.....|+..+.... ...+.|+++++||+|+.+.....+
T Consensus 97 Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 176 (193)
T 2ged_A 97 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSK 176 (193)
T ss_dssp EETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHH
T ss_pred ECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHH
Confidence 799999998888888776 89999999999 7888888888887775432 125799999999999987766665
Q ss_pred HHHHh
Q psy17510 73 IQEKL 77 (113)
Q Consensus 73 ~~~~~ 77 (113)
+.+.+
T Consensus 177 ~~~~l 181 (193)
T 2ged_A 177 IKDAL 181 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 165
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.42 E-value=3.3e-13 Score=91.77 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=64.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhH------HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI------DEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~ 72 (113)
||||+++|...+..++..+|++++|+|+++.... ....+.+...... ...|+++++||+|+.+... .++
T Consensus 117 DTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~ 193 (483)
T 3p26_A 117 DAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDWSQQRFEE 193 (483)
T ss_dssp CCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGGTTCHHHHHH
T ss_pred ECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcEEEEEECcCcccchHHHHHH
Confidence 8999999999999999999999999999875332 1222333333221 2357999999999865211 112
Q ss_pred HHHHhC----CCccCCCCeEEEeccccCCCCHHH
Q psy17510 73 IQEKLG----LTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 73 ~~~~~~----~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
+.+... ...+....++++++||++|.|+.+
T Consensus 194 i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 194 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 222111 111112357899999999999874
No 166
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.41 E-value=2.7e-13 Score=99.30 Aligned_cols=106 Identities=21% Similarity=0.168 Sum_probs=73.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCH-----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-----HEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-----~~~~ 74 (113)
||||+++|...+..++..+|++|+|+|+++... ....+++..+.. .++| +++++||+|+.+.... .++.
T Consensus 365 DTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~ 439 (1289)
T 3avx_A 365 DCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVR 439 (1289)
T ss_dssp ECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHH
Confidence 899999999998889999999999999987432 233445544432 3678 7999999999752111 1122
Q ss_pred HHhCCCccCCCCeEEEeccccCC--------CCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTA--------DGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~--------~~i~~~~~~l~~~~ 111 (113)
+.+....+....++++++||+++ .|+.++++.+...+
T Consensus 440 elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 440 ELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 22211112223578999999999 46889999888754
No 167
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.41 E-value=3.4e-13 Score=86.23 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=69.4
Q ss_pred CCCCcc-------------CchhhHHhhhcCCcEEE-EEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQD-------------KIRPLWRHYYTGTQGLI-FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~-------------~~~~~~~~~~~~~~~vi-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||.. .+..++..|+..++.++ +|+|+++..+..+...+++.+.. .+.|+++|+||+|+.+
T Consensus 131 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 131 DLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMD 206 (299)
T ss_dssp ECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSSEEEEEECGGGSC
T ss_pred eCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----CCCeEEEEEEccccCC
Confidence 799964 45667888999998777 68999875443333345555522 4789999999999865
Q ss_pred CCC-HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 67 AMK-PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
... ..+..+. ..........+++.+||+++.|++++++++.+.
T Consensus 207 ~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 207 EGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp TTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 432 2222111 001111122478999999999999999987653
No 168
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.38 E-value=1.2e-11 Score=84.91 Aligned_cols=62 Identities=26% Similarity=0.259 Sum_probs=48.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||++.|...+..++..+|++|+|+|+++... .....++..+.. .++|+++++||+|+.+.
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-~~t~~~~~~~~~----~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-DRTRKLMEVTRL----RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-HHHHHHHHHHTT----TTCCEEEEEECTTSCCS
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-HHHHHHHHHHHH----cCCCEEEEEcCcCCccc
Confidence 899999999988889999999999999987532 223344444422 57899999999998764
No 169
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.37 E-value=1.6e-12 Score=83.72 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=66.8
Q ss_pred CCCCcc-Cc--------hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCH
Q psy17510 1 DVGGQD-KI--------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKP 70 (113)
Q Consensus 1 D~~G~~-~~--------~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~ 70 (113)
||||+. +. ......++..+|++++|+|.++ +.....++...... .+.|+++++||+|+.+. ...
T Consensus 62 DTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~ 135 (301)
T 1ega_A 62 DTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADL 135 (301)
T ss_dssp SSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHH
T ss_pred ECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHH
Confidence 899997 32 2233557889999999999976 22233344433332 46899999999998651 112
Q ss_pred HHHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 71 HEIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+..+.+.. ..++ .++++||+++.|++++++.+...+
T Consensus 136 ~~~l~~l~~----~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 136 LPHLQFLAS----QMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp HHHHHHHHT----TSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred HHHHHHHHH----hcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 122222221 1122 688999999999999999998754
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.36 E-value=1.7e-13 Score=92.82 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=55.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh---hHH---HHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCC-CHH-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RID---EARQELHRIINDREMRDAI-ILIFANKQDLPDAM-KPH- 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~-~~~- 71 (113)
|||||++|...+..++..+|++|+|+|+++.. +++ ...+.+..... .++| +++++||+|+.+.. +..
T Consensus 127 DtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~ 202 (467)
T 1r5b_A 127 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPSVQWSEER 202 (467)
T ss_dssp CCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTTCSSCHHH
T ss_pred ECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCCCccccHHH
Confidence 89999999999888999999999999998752 111 12222333322 4677 99999999996421 211
Q ss_pred ------HHHHHhCCC-ccC-CCCeEEEeccccCCCCHHHHH
Q psy17510 72 ------EIQEKLGLT-RIR-DRNWYVQPSCATTADGLYEGL 104 (113)
Q Consensus 72 ------~~~~~~~~~-~~~-~~~~~~~~~sa~~~~~i~~~~ 104 (113)
++.+.+... .+. ...++++++||++|.|+.+++
T Consensus 203 ~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 203 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 122211111 111 125789999999999987644
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.32 E-value=4e-12 Score=88.61 Aligned_cols=100 Identities=20% Similarity=0.162 Sum_probs=64.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh------HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR------IDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~ 72 (113)
||||+++|...+..++..+|++|+|+|+++... .......+..+... ...|+++++||+|+.+... ..+
T Consensus 251 DTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l---gi~~iIVVvNKiDl~~~~~~~~~e 327 (611)
T 3izq_1 251 DAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDWSQQRFEE 327 (611)
T ss_dssp ECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT---TCCEEEEEEECTTTTTTCHHHHHH
T ss_pred ECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc---CCCeEEEEEecccccchhHHHHHH
Confidence 899999999999999999999999999986310 11222333333221 2346999999999875211 111
Q ss_pred HHHHh----CCCccCCCCeEEEeccccCCCCHHHH
Q psy17510 73 IQEKL----GLTRIRDRNWYVQPSCATTADGLYEG 103 (113)
Q Consensus 73 ~~~~~----~~~~~~~~~~~~~~~sa~~~~~i~~~ 103 (113)
+.+.. ....+....++++++||++|.|+.++
T Consensus 328 i~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 328 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11111 11111122568999999999998754
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.31 E-value=4.2e-12 Score=85.89 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=63.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh---hHH---HHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC--HH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RID---EARQELHRIINDREMRDAI-ILIFANKQDLPDAMK--PH 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~--~~ 71 (113)
|||||++|...+..++..+|++|+|+|+++.. +++ ...+++..... .++| +++++||+|+.+... ..
T Consensus 91 DtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~~~~~ 166 (458)
T 1f60_A 91 DAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESRFQ 166 (458)
T ss_dssp ECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHHHH
T ss_pred ECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCHHHHH
Confidence 89999999999999999999999999998642 111 23333333322 3555 999999999863111 11
Q ss_pred H----HHHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 72 E----IQEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 72 ~----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
+ +.+.+....+....++++++||++|.|+.+
T Consensus 167 ~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 167 EIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 1 111111111111246799999999999863
No 173
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.31 E-value=1.3e-12 Score=86.24 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=65.4
Q ss_pred ccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCCCccC
Q psy17510 5 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTRIR 83 (113)
Q Consensus 5 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~ 83 (113)
+++|+++++.+...++++++|+|++++. ..|...+.+. ..++|+++|+||+|+.+.. ..+.+.+... ....
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~~ 127 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSAK 127 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHH-HHHH
Confidence 5678889999999999999999998752 2333333221 1478999999999986533 2222222111 0001
Q ss_pred CCC---eEEEeccccCCCCHHHHHHHHHh
Q psy17510 84 DRN---WYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 84 ~~~---~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
..+ .+++.+||+++.|++++++.+.+
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 112 26889999999999999998865
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.30 E-value=2.1e-11 Score=85.78 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=48.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+++|...+..++..+|++++|+|+++... .....++..+.. .++|+++++||+|+.
T Consensus 80 DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~-~qt~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 80 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-VGTERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred eCCCccchHHHHHHHHhhcCcEEEEEcCCcccc-hhHHHHHHHHHH----ccCCEEEEecCCchh
Confidence 899999999999999999999999999876432 223455555543 468999999999987
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.29 E-value=1.3e-11 Score=81.35 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=66.7
Q ss_pred CCCCc---------cCchhhHHhhhcCCcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQ---------DKIRPLWRHYYTGTQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~---------~~~~~~~~~~~~~~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||+|. +.|+..+. .+..+|++++|+|++++. .......|...+.. ....++|+++|+||+|+.+..
T Consensus 232 DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~~~p~ilV~NK~Dl~~~~- 308 (364)
T 2qtf_A 232 DTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVSGKPILVTLNKIDKINGD- 308 (364)
T ss_dssp ECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCCSCCEEEEEECGGGCCSC-
T ss_pred eCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcCCCCEEEEEECCCCCCch-
Confidence 78886 22444444 578999999999998765 33333333322221 112568999999999986543
Q ss_pred HHH---HH----HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHE---IQ----EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~---~~----~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+ .. ..+. ....+++++||+++.|++++++++.+.+
T Consensus 309 ~~~~~~~~~~l~~~l~-----~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 309 LYKKLDLVEKLSKELY-----SPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHHHHHHHHC-----SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-----CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 211 11 2220 1234678999999999999999987654
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.28 E-value=6.2e-11 Score=83.72 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=50.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|...+..++..+|++|+|+|+++.........| ..+.. .++|+++++||+|+...
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence 8999999999999999999999999999986555544333 33433 47899999999998754
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.26 E-value=3.3e-13 Score=93.72 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=63.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh---h---HHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC--H-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---R---IDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK--P- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~--~- 70 (113)
||||+++|...+..++..+|++|+|+|+++.. . ......++..+.. .++| +++++||+|+.+... .
T Consensus 261 DTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~~~~~~~ 336 (592)
T 3mca_A 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSWSEDRFQ 336 (592)
T ss_dssp EEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTTCHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccccHHHHH
Confidence 89999999988888999999999999998531 1 1122233333322 3565 999999999865211 1
Q ss_pred ---HHHHHHh-CCCccCCCCeEEEeccccCCCCHH--------------HHHHHHHhh
Q psy17510 71 ---HEIQEKL-GLTRIRDRNWYVQPSCATTADGLY--------------EGLTWLTSN 110 (113)
Q Consensus 71 ---~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~--------------~~~~~l~~~ 110 (113)
.++...+ ....+....++++++||++|.|+. .+++.|...
T Consensus 337 ~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 337 EIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp HHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred HHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 1222222 211222235689999999999997 677777654
No 178
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.25 E-value=3.4e-12 Score=84.29 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=65.6
Q ss_pred CccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCCCcc
Q psy17510 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTRI 82 (113)
Q Consensus 4 G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~ 82 (113)
.+++|++..++++.+++++++|+|++++.+ .|...+.+. ..++|+++|+||+|+.+.. ..+.+.+... ...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPRSVKYPKLLRWMR-RMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCTTCCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCCccCHHHHHHHHH-HHH
Confidence 367889999999999999999999998652 122222111 1478999999999986542 2222222211 001
Q ss_pred CCCC---eEEEeccccCCCCHHHHHHHHHhh
Q psy17510 83 RDRN---WYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 83 ~~~~---~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+ .+++.+||+++.|++++++.+.+.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 1122 268899999999999999988653
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.23 E-value=1.4e-11 Score=87.08 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=70.7
Q ss_pred CCCCccC---chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHH----
Q psy17510 1 DVGGQDK---IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPH---- 71 (113)
Q Consensus 1 D~~G~~~---~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~---- 71 (113)
||||... ....+..|+..+|++++|+|++++.+..+...|...+.. .+.|+++|+||+|+.+.. +..
T Consensus 180 DTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~ 255 (695)
T 2j69_A 180 DSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDPDDVEE 255 (695)
T ss_dssp ECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSSTTCHHH
T ss_pred ECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccChhhHHH
Confidence 8999654 345667899999999999999887666655444444421 367899999999985421 110
Q ss_pred ------HHHH----HhCCCccC-----CCCeEEEecccc--------------CCCCHHHHHHHHHhhc
Q psy17510 72 ------EIQE----KLGLTRIR-----DRNWYVQPSCAT--------------TADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ------~~~~----~~~~~~~~-----~~~~~~~~~sa~--------------~~~~i~~~~~~l~~~~ 111 (113)
.+.+ .+. .... ....+++++||+ ++.|++++++.+.+.+
T Consensus 256 l~~~~~~i~~~~~~~l~-~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 256 LQASENRLRQVFNANLA-EYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHG-GGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 1111 111 1111 123468999999 9999999999887643
No 180
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.22 E-value=2.5e-12 Score=81.67 Aligned_cols=87 Identities=8% Similarity=0.056 Sum_probs=45.3
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCC
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
+|+++++++.+..........+++.+. .++|+++|+||+|+.+........+... ..+...+++++++||+++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~-----~~~pvi~V~nK~D~~~~~e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~ 189 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIM-KEIQEHKIKIYEFPETDDE 189 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHT-----TTSCEEEEESSGGGSCHHHHHHHHHHHH-HHHHHTTCCCCCC------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHh-----ccCCEEEEEeccCCCCHHHHHHHHHHHH-HHHHHcCCeEEcCCCCCCh
Confidence 789999998775332233345555552 2689999999999854222211111111 1112245567899999999
Q ss_pred CHHHHHHHHHhhc
Q psy17510 99 GLYEGLTWLTSNH 111 (113)
Q Consensus 99 ~i~~~~~~l~~~~ 111 (113)
|+.++++++.+.+
T Consensus 190 ~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 190 EENKLVKKIKDRL 202 (274)
T ss_dssp -----CHHHHHTC
T ss_pred hHHHHHHHHhcCC
Confidence 9999999988764
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.21 E-value=2.9e-10 Score=80.51 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=48.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|...+..++..+|++|+|+|+++..... ...++..+.. .++|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~q-t~~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQ-SETVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 89999999999999999999999999998754333 2333444432 47899999999998653
No 182
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.20 E-value=3.1e-11 Score=75.92 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=63.3
Q ss_pred CCCCccCch-----------hhHHhhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHcCcCCCCCeEEEEEe-CCCCCCC
Q psy17510 1 DVGGQDKIR-----------PLWRHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFAN-KQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~-----------~~~~~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~n-K~D~~~~ 67 (113)
||||+..+. .....++..+|++++|+|+++... ......++...... ....|.++++| |+|+.+.
T Consensus 77 DTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 77 DTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp ECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC
T ss_pred ECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc
Confidence 899986552 223347789999999999986222 22233455554321 11356666666 9998743
Q ss_pred CCHHH------------HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 MKPHE------------IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 ~~~~~------------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... +.+..+.... .+..+++||+++.|++++|+++.+.+
T Consensus 155 -~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 155 -SLMDYMHDSDNKALSKLVAACGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp -CHHHHHHHCCCHHHHHHHHHTTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHhcchHHHHHHHHHhCCeEE---EecCcccccccHHHHHHHHHHHHHHH
Confidence 3322 2222221110 01016899999999999999998754
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.19 E-value=5.2e-10 Score=79.09 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=49.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|...+..++..+|++++|+|+++..+...... +..+.. .++|+++++||+|+...
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence 899999999999999999999999999987655544333 344433 47899999999998763
No 184
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.15 E-value=6e-10 Score=76.94 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=50.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+-.|..-....+.-+|++|+|+|+...- ...+...++.+.+ .++|.++++||+|....
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV-~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGV-EAQTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBS-CHHHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCc-ccccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 99999999999999999999999999998642 2333455566654 57999999999998653
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.14 E-value=6.7e-12 Score=82.67 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=46.9
Q ss_pred CCCCc-------cCchhhHH-------hhhcCC-------------cEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCC
Q psy17510 1 DVGGQ-------DKIRPLWR-------HYYTGT-------------QGLIFVVDCADRDRIDEAR-QELHRIINDREMRD 52 (113)
Q Consensus 1 D~~G~-------~~~~~~~~-------~~~~~~-------------~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~ 52 (113)
||||+ +++..++. .|+..+ |+++|+++.+ ..++.... .|+..+ ..+
T Consensus 101 DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~ 174 (361)
T 2qag_A 101 DTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNK 174 (361)
T ss_dssp C--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-
T ss_pred EeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccC
Confidence 89998 77877775 666544 3566666542 23333333 455544 257
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHH--HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 53 AIILIFANKQDLPDAMKPHEIQE--KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 53 ~p~ilv~nK~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+|+++|+||+|+.+. .++.. ..........+++++++||+++.+ ++.|.++.+.
T Consensus 175 ~piIlV~NK~Dl~~~---~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 175 VNIVPVIAKADTLTL---KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp SCEEEEEECCSSSCH---HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHH
T ss_pred CCEEEEEECCCCCCH---HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 899999999998653 22222 111122334567889999999988 6666655543
No 186
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.12 E-value=1.4e-10 Score=74.76 Aligned_cols=106 Identities=19% Similarity=0.111 Sum_probs=63.4
Q ss_pred CCCCccC-------------chhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDK-------------IRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~-------------~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||..+ +..++..++..+|++++|+|.++.. .......+...+.. .+.|+++|+||+|+.+
T Consensus 137 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~----~~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 137 DLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP----EGKRTIGVITKLDLMD 212 (315)
T ss_dssp ECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS----SCSSEEEEEECTTSSC
T ss_pred ECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC----CCCcEEEEEcCcccCC
Confidence 7999754 5567778999999999999974332 11111234444422 4789999999999865
Q ss_pred CCC-HHHHHHHhCCCccCCCCeEEEeccccC---CCCHHHHHHHHHhhc
Q psy17510 67 AMK-PHEIQEKLGLTRIRDRNWYVQPSCATT---ADGLYEGLTWLTSNH 111 (113)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~~~l~~~~ 111 (113)
... ..+..+. ..........++..+|+.+ +.|+.++++.+...+
T Consensus 213 ~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 213 KGTDAMEVLTG-RVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp SSCCCHHHHTT-SSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred cchHHHHHHhC-CCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 433 1222211 0011111223455566666 788999888866543
No 187
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.11 E-value=9.1e-11 Score=74.96 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=64.0
Q ss_pred CCCcc-CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 2 VGGQD-KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 2 ~~G~~-~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
.|||. +..+.....++.+|+++.|+|+.++.+... ..+..+. .++|.++++||+|+.+....+...+.+.
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~-- 76 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE-- 76 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHH--
Confidence 57875 445566678999999999999998754431 1233332 4689999999999976211122222221
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+++++.+||+++.|++++++.+.+.
T Consensus 77 ---~~g~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 77 ---NQGIRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp ---TTTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred ---hcCCcEEEEECCCcccHHHHHHHHHHH
Confidence 234468899999999999988876654
No 188
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.10 E-value=2.6e-11 Score=76.20 Aligned_cols=106 Identities=15% Similarity=-0.025 Sum_probs=61.8
Q ss_pred CCCCccCchhhHH------hhhcCCcEEEEEEECCChhhHHHHHH---HHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQDKIRPLWR------HYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~~~~~~~~------~~~~~~~~vi~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||+..+..... .++.. +++++++|........+... +...... ..++|+++++||+|+.+.....
T Consensus 115 DtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~~~~~~~ 190 (262)
T 1yrb_A 115 DTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLSEEEKE 190 (262)
T ss_dssp ECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCCHHHHH
T ss_pred eCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEecccccccccHH
Confidence 8999876543321 24566 89999998764322222211 1111111 1368999999999986532111
Q ss_pred HHHHHhCC--------------------------CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGL--------------------------TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~--------------------------~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++.+.+.. ..+ ...++++++||+++.|++++++++.+.+
T Consensus 191 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 191 RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHh
Confidence 11111000 000 1234688999999999999999998754
No 189
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.09 E-value=3.9e-10 Score=68.49 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCCcc----------CchhhHHhhh---cCCcEEEEEEECCChhhHHH--HHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQD----------KIRPLWRHYY---TGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~----------~~~~~~~~~~---~~~~~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+. .++.....++ ..++++++++|++.+.+... ...|+. . .+.|+++++||+|+.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~----~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D----SNIAVLVLLTKADKL 150 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H----TTCCEEEEEECGGGS
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H----cCCCeEEEEecccCC
Confidence 688874 2344444455 47899999999987544332 222322 1 468999999999975
Q ss_pred CCCCHH----HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 66 DAMKPH----EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 66 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+ ....... . ....+.++++||+++.|++++++++.+.+
T Consensus 151 s~~~~~~~~~~~~~~~~-~--~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 151 ASGARKAQLNMVREAVL-A--FNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CHHHHHHHHHHHHHHHG-G--GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH-h--cCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 522111 1111111 1 11245788999999999999999988654
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.01 E-value=3.1e-11 Score=79.29 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=61.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||... ........+|++++|+|+........ +. .....+|+++|+||+|+.+..... ++.+.
T Consensus 178 DTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~-------l~--~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~ 245 (355)
T 3p32_A 178 ETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQG-------IK--KGVLELADIVVVNKADGEHHKEARLAARELSAA 245 (355)
T ss_dssp EECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTT-------CC--TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHH
T ss_pred eCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHH-------HH--HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHH
Confidence 6888432 22334588999999999875433211 10 112346999999999986422221 22222
Q ss_pred hCCCccC--CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIR--DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+...... ..+.+++.+||+++.|++++++++.+.+
T Consensus 246 l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 246 IRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 1110000 1235799999999999999999987654
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.01 E-value=1.5e-10 Score=75.97 Aligned_cols=103 Identities=18% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCCCcc-------------CchhhHHhhhcCCcEEEE-EEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQD-------------KIRPLWRHYYTGTQGLIF-VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~-------------~~~~~~~~~~~~~~~vi~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||.. .++.+...|+..++.+++ |+|.+....-.+...+++.+. ..+.|+++|+||+|+.+
T Consensus 136 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 136 DLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVITKLDLMD 211 (353)
T ss_dssp ECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEEECGGGSC
T ss_pred ECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEeccccccC
Confidence 789963 456677788877765555 556554222222234555552 25789999999999865
Q ss_pred CCC-HHHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHh
Q psy17510 67 AMK-PHEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
... ..++.+ ........+ .+++.+||+++.|++++++++..
T Consensus 212 ~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 212 EGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 432 222222 111111123 46889999999999999988765
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.00 E-value=1.3e-09 Score=73.02 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=61.9
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
....++.++.++|++ ...+.....+.+++.... .....|.++++||+|+........+.+... ..+++++.+|
T Consensus 232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iS 305 (416)
T 1udx_A 232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVS 305 (416)
T ss_dssp HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECC
T ss_pred HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEE
Confidence 456899999999997 445555555555543321 123579999999999875311122222221 2345789999
Q ss_pred ccCCCCHHHHHHHHHhhc
Q psy17510 94 ATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~~ 111 (113)
|+++.|++++++++.+.+
T Consensus 306 A~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 306 ALTGAGLPALKEALHALV 323 (416)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHH
Confidence 999999999999998764
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.97 E-value=1.4e-10 Score=76.23 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCCCccCc-------------hhhHHhhhcCCcEEEEEEECCChhhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCADRDRI-DEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~-------------~~~~~~~~~~~~~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||..++ ..+...|+.++|++|+|+|.++.... .....++..+. ..+.|+++|+||+|+.+
T Consensus 142 DtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~----~~~~~~i~V~nK~Dl~~ 217 (360)
T 3t34_A 142 DLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD----PSGDRTFGVLTKIDLMD 217 (360)
T ss_dssp ECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSC----TTCTTEEEEEECGGGCC
T ss_pred ECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhc----ccCCCEEEEEeCCccCC
Confidence 89998887 67788899999999999987653322 22233344432 25689999999999865
Q ss_pred CCC-HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHH
Q psy17510 67 AMK-PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLT 105 (113)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 105 (113)
... ..++.+. .....+.+++.+|+.++.++++.+.
T Consensus 218 ~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 218 KGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp TTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCC
T ss_pred CcccHHHHHcC----ccccccCCeEEEEECChHHhccCCC
Confidence 322 2222221 1123445688899988877765433
No 194
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.96 E-value=1.3e-09 Score=76.52 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
|||||..|..-....+.-+|++|+|+|+...-. ..+...++.+.+ .++|.++++||+|.....- ..++.+.+
T Consensus 73 DTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~-~qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l 147 (638)
T 3j25_A 73 DTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ-AQTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKL 147 (638)
T ss_dssp ECCCSSSTHHHHHHHHTTCSEEECCEESSCTTC-SHHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTT
T ss_pred ECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHh
Confidence 899999999999999999999999999986421 223455556644 4689999999999765322 22333322
Q ss_pred CCCc--------------------------------------------------------cCCCCeEEEeccccCCCCHH
Q psy17510 78 GLTR--------------------------------------------------------IRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 78 ~~~~--------------------------------------------------------~~~~~~~~~~~sa~~~~~i~ 101 (113)
+... ....-.|++..||+++.|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~ 227 (638)
T 3j25_A 148 SAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGID 227 (638)
T ss_dssp CCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHH
T ss_pred CCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCch
Confidence 2110 00123578889999999999
Q ss_pred HHHHHHHhhcC
Q psy17510 102 EGLTWLTSNHK 112 (113)
Q Consensus 102 ~~~~~l~~~~~ 112 (113)
.+++.+...+.
T Consensus 228 ~LLd~i~~~~p 238 (638)
T 3j25_A 228 NLIEVITNKFY 238 (638)
T ss_dssp HHHHHHHHSCC
T ss_pred hHhhhhhcccc
Confidence 99999987653
No 195
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.93 E-value=1.4e-09 Score=68.17 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=60.4
Q ss_pred CCCCc--------cCchhhHHhhh----cCCcEEEEEEECCChhh-HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQ--------DKIRPLWRHYY----TGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~--------~~~~~~~~~~~----~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||. +.+......++ .++|++++|+|+++... ......++...... ...+.|++++.||.|+.+.
T Consensus 76 DTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 76 DTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp ECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC
T ss_pred ECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC
Confidence 89996 44444333344 89999999999985322 22234455554321 2236899999999998653
Q ss_pred CCHHHHHHHhC----CCccC--CCCeEEEecccc---CCCCHHHHHHHHHhhc
Q psy17510 68 MKPHEIQEKLG----LTRIR--DRNWYVQPSCAT---TADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 ~~~~~~~~~~~----~~~~~--~~~~~~~~~sa~---~~~~i~~~~~~l~~~~ 111 (113)
+..++.+... ..... +..+..+..++. ++.|+.++++.+.+.+
T Consensus 155 -~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 155 -SLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp -CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 2222221100 00000 112223333332 2578999998876654
No 196
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.93 E-value=1.5e-09 Score=77.27 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=61.8
Q ss_pred hhhHHhhh-cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCCCccCCCC
Q psy17510 9 RPLWRHYY-TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGLTRIRDRN 86 (113)
Q Consensus 9 ~~~~~~~~-~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~ 86 (113)
..+...|+ ..+|++++|+|++......+...++..+.. .+.|+++|+||+|+.+.... ..+.. ..........
T Consensus 177 ~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~ 251 (772)
T 3zvr_A 177 RDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGY 251 (772)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCE
T ss_pred HHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccC
Confidence 34555565 578999999999865433333345555532 47899999999998654321 22222 1111111123
Q ss_pred eEEEeccccCCCCHHHHHHHHHh
Q psy17510 87 WYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 87 ~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+++.+||+++.|++++++.+..
T Consensus 252 ~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 252 IGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp EECCCCCCEESSSSEEHHHHHHH
T ss_pred CceEEecccccccchhHHHHHHH
Confidence 46889999999999998888765
No 197
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.86 E-value=8e-10 Score=68.72 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=40.0
Q ss_pred CCCCc-----------cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQ-----------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~-----------~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||. +.+...+..++.++|++++|+|+++.... ...++..+... ......|+++++||+|+.+.
T Consensus 84 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp ECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 79993 35556666677889999999998753321 12222222110 00124699999999998654
No 198
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.84 E-value=3.1e-08 Score=70.31 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=49.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||||-.|..-....+.-+|++|+|+|+...- -..+...++++.+ .++|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV-~~qT~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGV-EPQSETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEccccccC
Confidence 99999999999999999999999999998642 2234556666654 4799999999999754
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.83 E-value=1e-09 Score=67.26 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
.++.+++|+|++...... ..+.. . .+.|+++++||+|+.+. ....++.+.... . ...++++++||+
T Consensus 129 ~~~~~i~vvd~~~~~~~~--~~~~~-~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~--~-~~~~~i~~~Sa~ 196 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDVV--EKHPE-I------FRVADLIVINKVALAEAVGADVEKMKADAKL--I-NPRAKIIEMDLK 196 (221)
T ss_dssp SCSEEEEEEEGGGCTTHH--HHCHH-H------HHTCSEEEEECGGGHHHHTCCHHHHHHHHHH--H-CTTSEEEECBTT
T ss_pred ccCcEEEEEeCCCcchhh--hhhhh-h------hhcCCEEEEecccCCcchhhHHHHHHHHHHH--h-CCCCeEEEeecC
Confidence 578889999987643211 11111 1 24789999999998542 234443333221 1 234679999999
Q ss_pred CCCCHHHHHHHHHhhc
Q psy17510 96 TADGLYEGLTWLTSNH 111 (113)
Q Consensus 96 ~~~~i~~~~~~l~~~~ 111 (113)
++.|++++++++.+.+
T Consensus 197 ~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 197 TGKGFEEWIDFLRGIL 212 (221)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.81 E-value=1.2e-09 Score=71.51 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=58.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||....... ....+|++++|+|++...... .+... ..++|.++++||+|+.+..... ++.+.
T Consensus 155 DTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~----~l~~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~ 222 (341)
T 2p67_A 155 ETVGVGQSETE---VARMVDCFISLQIAGGGDDLQ----GIKKG-----LMEVADLIVINKDDGDNHTNVAIARHMYESA 222 (341)
T ss_dssp EEECCTTHHHH---HHTTCSEEEEEECC------C----CCCHH-----HHHHCSEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred eCCCccchHHH---HHHhCCEEEEEEeCCccHHHH----HHHHh-----hhcccCEEEEECCCCCChHHHHHHHHHHHHH
Confidence 78887554433 458999999999987542211 11000 0146889999999986532221 22221
Q ss_pred hCC-Ccc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGL-TRI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~-~~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. ... .....+++.+||+++.|++++++++.+.+
T Consensus 223 l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 223 LHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 111 100 00134789999999999999999987643
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.76 E-value=1.1e-08 Score=73.78 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=49.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+.+|...+..++..+|++|+|+|+++..+......|. .... .++|+++++||+|+.
T Consensus 104 DTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 104 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHH
T ss_pred ECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcc
Confidence 89999999999999999999999999999876666544443 3322 468999999999975
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.74 E-value=5.9e-09 Score=72.07 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=48.8
Q ss_pred CCCCccC-----------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDK-----------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~-----------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||... |...+..++..+|++++|+|+++.........++..+.+ .+.|+++|+||+|+.+.
T Consensus 160 DTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 160 DTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVET 233 (550)
T ss_dssp ECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCH
T ss_pred ECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCH
Confidence 7999875 567777889999999999999875444555666666633 35799999999998653
No 203
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.72 E-value=3e-09 Score=67.27 Aligned_cols=93 Identities=11% Similarity=-0.006 Sum_probs=58.7
Q ss_pred CCccC-chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCc
Q psy17510 3 GGQDK-IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTR 81 (113)
Q Consensus 3 ~G~~~-~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 81 (113)
|||.. ..+.....++.+|+++.|+|+.++.+.... .+. + . ++|.+++.||+|+.+....+...+.+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~--- 72 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK--- 72 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH---
Confidence 67653 334556688999999999999987443210 111 1 1 789999999999976321222222221
Q ss_pred cCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 82 IRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 82 ~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+.++ .+||+++.|++++++.+...
T Consensus 73 --~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 73 --KQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp --HTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred --HcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 123456 89999999999999877553
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.72 E-value=1.5e-08 Score=66.48 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=55.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||+|.... .......+|++++|+|++.+....... ..+ ...|.++++||+|+.+... ..++...
T Consensus 173 DT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~ 240 (349)
T 2www_A 173 ETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDLIVPARRIQAEYVSA 240 (349)
T ss_dssp ECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHH
T ss_pred ECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCCchhHHHHHHHHHHH
Confidence 67785311 233467899999999997643221111 111 2468899999999854211 1112222
Q ss_pred hCCCcc--CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRI--RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~--~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...... .....+++.+||+++.|++++++++.+.+
T Consensus 241 l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 241 LKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 221100 01134788999999999999999987653
No 205
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.64 E-value=2.7e-08 Score=62.74 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=41.4
Q ss_pred CCCCccCchhhHHhhhc---------CCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYT---------GTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~---------~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~ 65 (113)
||||++.+..+.+.+++ ++|++++|++.+..........|+..+..... ....|+++++||+|+.
T Consensus 90 DTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 90 DTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred ECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 89999887655444433 78999999988754321222344444433210 1125999999999985
No 206
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.59 E-value=4.3e-09 Score=67.76 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=39.7
Q ss_pred CcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCC
Q psy17510 19 TQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTA 97 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 97 (113)
+++++|+.+++.. +++.. ..++..+. .+.|+++|+||+|+.+....... ...........+++++++||+++
T Consensus 127 a~~ll~ldePt~~-~Ld~~~~~~l~~l~-----~~~~iilV~~K~Dl~~~~e~~~~-~~~~~~~~~~~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 127 VHCCFYFISPFGH-GLKPLDVAFMKAIH-----NKVNIVPVIAKADTLTLKERERL-KKRILDEIEEHNIKIYHLPDAES 199 (301)
T ss_dssp CCEEEEEECSSSS-SCCHHHHHHHHHHT-----TTSCEEEEECCGGGSCHHHHHHH-HHHHHHHHHHTTCCCCCCC----
T ss_pred hhheeeeecCccc-CCCHHHHHHHHHHH-----hcCCEEEEEEeCCCCCHHHHHHH-HHHHHHHHHHcCCeEEecCCccc
Confidence 3446666665421 22222 23444441 45799999999998652111100 11111111223457889999999
Q ss_pred CCHHHHHHHHHhhc
Q psy17510 98 DGLYEGLTWLTSNH 111 (113)
Q Consensus 98 ~~i~~~~~~l~~~~ 111 (113)
|++++|.++.+.+
T Consensus 200 -~v~e~f~~l~~~i 212 (301)
T 2qnr_A 200 -DEDEDFKEQTRLL 212 (301)
T ss_dssp ------CHHHHHHH
T ss_pred -cccHHHHHHHHHh
Confidence 9999999887654
No 207
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.59 E-value=1.1e-08 Score=66.07 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=60.3
Q ss_pred CchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHHhCCCc
Q psy17510 7 KIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEKLGLTR 81 (113)
Q Consensus 7 ~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~ 81 (113)
|-+.+.+...+++|.+++|+|+.+|. +......++..... .++|.+++.||+|+.+... .+++.+.+.
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~--- 147 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR--- 147 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH---
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHH---
Confidence 33445666789999999999998654 44444555544422 5789999999999976422 123333321
Q ss_pred cCCCCeEEEeccccCCCCHHHHHHH
Q psy17510 82 IRDRNWYVQPSCATTADGLYEGLTW 106 (113)
Q Consensus 82 ~~~~~~~~~~~sa~~~~~i~~~~~~ 106 (113)
..+.+++.+||.++.|++++++.
T Consensus 148 --~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 148 --NIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp --HHTCCEEECCHHHHTTCTTTGGG
T ss_pred --hCCCeEEEEecCCCCCHHHHHhh
Confidence 12346889999998887776653
No 208
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.58 E-value=9.4e-10 Score=73.30 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHH
Q psy17510 52 DAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGL 104 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 104 (113)
.+|+++++||+|+........+.+.+. ..+.+++.+||+.+.|+.+++
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~-----~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEE-----KRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHH-----HTTCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHh-----hcCCcEEEEeccchhhHHHHH
Confidence 489999999999762111222222221 113468899999988887653
No 209
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.43 E-value=1.6e-07 Score=59.38 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=40.6
Q ss_pred CCCCccCchhh-------HHhh--hcCCcEEEEEEECCChhhHHH-HHHHHHHHHcCcC-CCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPL-------WRHY--YTGTQGLIFVVDCADRDRIDE-ARQELHRIINDRE-MRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~-------~~~~--~~~~~~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~ 66 (113)
||||+..+..+ +..| ..++|++++|+|++.. ++.. ...|+..+..... ...+|+++|+||+|+.+
T Consensus 93 DTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 93 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred ECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 89999776532 1122 3479999999988653 2322 2355555533210 01269999999999865
No 210
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.34 E-value=2e-06 Score=56.68 Aligned_cols=87 Identities=20% Similarity=0.109 Sum_probs=54.4
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
..+++|.+++|.+.....+......++..... .++|.++|.||+|+.+......+.+... .+...+++++.+||
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~--~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMD--IYRNIGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHH--HHHTTTCCEEECBT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHH--HHHhCCCcEEEEec
Confidence 36789999988765422344444455544322 4688899999999865321111111111 12234567899999
Q ss_pred cCCCCHHHHHHHH
Q psy17510 95 TTADGLYEGLTWL 107 (113)
Q Consensus 95 ~~~~~i~~~~~~l 107 (113)
.++.|++++...+
T Consensus 201 ~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 201 HTQDGLKPLEEAL 213 (358)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHHhc
Confidence 9999999887654
No 211
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.28 E-value=1.2e-07 Score=63.57 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=34.4
Q ss_pred cEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHH--HhCCCccCCCCeEEEeccccC
Q psy17510 20 QGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE--KLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sa~~ 96 (113)
|+++|+.+++. .+++.. ..|+..+. .++|+++|+||+|+... .++.. ......+...+++++++|+++
T Consensus 140 ~vlL~ldePt~-~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~---~ev~~~k~~i~~~~~~~~i~~~~~sa~~ 210 (418)
T 2qag_C 140 QCCLYFIAPSG-HGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTP---EECQQFKKQIMKEIQEHKIKIYEFPETD 210 (418)
T ss_dssp CEEEEECCC-C-CSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCH---HHHHHHHHHHHHHHHHHTCCCCCCC---
T ss_pred eEEEEEecCcc-cCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccH---HHHHHHHHHHHHHHHHcCCeEEeCCCCC
Confidence 34555555431 233333 35666662 36899999999998652 22221 001111112345677999999
Q ss_pred CCCHHHHHHHHHhhc
Q psy17510 97 ADGLYEGLTWLTSNH 111 (113)
Q Consensus 97 ~~~i~~~~~~l~~~~ 111 (113)
+.++.+++..+...+
T Consensus 211 ~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 211 DEEENKLVKKIKDRL 225 (418)
T ss_dssp --------------C
T ss_pred CcCHHHHHHHHHhhC
Confidence 999998888776654
No 212
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.26 E-value=3.6e-07 Score=55.96 Aligned_cols=56 Identities=23% Similarity=0.238 Sum_probs=39.1
Q ss_pred CeEEEEEeCCCCCCC--CCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 53 AIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 53 ~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.|.++++||+|+.+. ....++.+.... . ...++++++||+++.|++++|+++.+.+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKR--I-NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHH--H-CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHH--h-CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 577999999998542 233333332221 0 2345799999999999999999998754
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.25 E-value=2.8e-06 Score=55.54 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=54.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~ 75 (113)
||+|...-.. .....+|.+++++|++........... + ...|.++++||+|+.+... .+.+..
T Consensus 154 DT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~ 221 (337)
T 2qm8_A 154 ETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---I------FELADMIAVNKADDGDGERRASAAASEYRA 221 (337)
T ss_dssp EECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---H------HHHCSEEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred ECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---H------hccccEEEEEchhccCchhHHHHHHHHHHH
Confidence 6777643222 234689999999998643211100000 0 1245677889999743211 122322
Q ss_pred HhCCCccC--CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 76 KLGLTRIR--DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 76 ~~~~~~~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
......-. ....+++.+||+++.|++++++.+.+.
T Consensus 222 a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 222 ALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 22211100 012368889999999999999988764
No 214
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.88 E-value=0.00014 Score=47.99 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=23.6
Q ss_pred CCCCccCchh-------hHHhhhcCCcEEEEEEECCC
Q psy17510 1 DVGGQDKIRP-------LWRHYYTGTQGLIFVVDCAD 30 (113)
Q Consensus 1 D~~G~~~~~~-------~~~~~~~~~~~vi~v~d~~~ 30 (113)
||||+.++.. .+..++..+|++++|+|+++
T Consensus 72 DtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 72 DIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp ECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 8999987642 23346789999999999985
No 215
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.83 E-value=5.6e-05 Score=50.01 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCCCccCch-------hhHHhhhcCCcEEEEEEECCC
Q psy17510 1 DVGGQDKIR-------PLWRHYYTGTQGLIFVVDCAD 30 (113)
Q Consensus 1 D~~G~~~~~-------~~~~~~~~~~~~vi~v~d~~~ 30 (113)
||||+.++. ..+..++..+|++++|+|+++
T Consensus 75 DtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 75 DIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp ECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 799987652 233446889999999999985
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.83 E-value=0.0048 Score=42.49 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=57.9
Q ss_pred CCCCccCch-hhHHh---h--hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCCCCCCCCH-HH
Q psy17510 1 DVGGQDKIR-PLWRH---Y--YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDLPDAMKP-HE 72 (113)
Q Consensus 1 D~~G~~~~~-~~~~~---~--~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~-~~ 72 (113)
||||..... .++.. . ...+|.+++|+|+..... .......+.. .+|+ .+|+||+|....... -.
T Consensus 190 DTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~-----~~~i~gvVlNK~D~~~~~g~~l~ 261 (504)
T 2j37_W 190 DTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD-----KVDVASVIVTKLDGHAKGGGALS 261 (504)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH-----HHCCCCEEEECTTSCCCCTHHHH
T ss_pred eCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh-----hcCceEEEEeCCccccchHHHHH
Confidence 788876432 22211 1 227899999999986432 1122222211 2575 899999998643332 23
Q ss_pred HHHHhCCCc--------cCC--CCeEEEeccccCCCC-HHHHHHHHHhh
Q psy17510 73 IQEKLGLTR--------IRD--RNWYVQPSCATTADG-LYEGLTWLTSN 110 (113)
Q Consensus 73 ~~~~~~~~~--------~~~--~~~~~~~~sa~~~~~-i~~~~~~l~~~ 110 (113)
+...++.+. +.. ...+...+|+..|.| +..+++++.+.
T Consensus 262 ~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 262 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 334443221 000 111345689999999 99999888754
No 217
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0026 Score=42.27 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=32.8
Q ss_pred hhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
.....||++++|+|++++.. .+.....+.... ....++|..++.||.|..
T Consensus 145 ~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 145 AVARTCNLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSSS
T ss_pred HHHHhcCccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhhh
Confidence 45678999999999998632 222223333331 123567889999999963
No 218
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.90 E-value=0.29 Score=29.81 Aligned_cols=68 Identities=18% Similarity=0.105 Sum_probs=46.6
Q ss_pred hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 11 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
.....+..+|.+++++.++ ..+.......++.+.+.. .....+.++.|+.+.......+++.+.++..
T Consensus 133 ~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~ 200 (245)
T 3ea0_A 133 VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTNSRITSDEIEKVIGRP 200 (245)
T ss_dssp THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSCTTSCHHHHHHHHTSC
T ss_pred HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCCCCCCHHHHHHHhCCC
Confidence 3344577899999999875 456666677777665431 1245688999999976656667777776653
No 219
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.90 E-value=0.013 Score=39.13 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=19.6
Q ss_pred CCCCccCchh-------hHHhhhcCCcEEEEEEECCC
Q psy17510 1 DVGGQDKIRP-------LWRHYYTGTQGLIFVVDCAD 30 (113)
Q Consensus 1 D~~G~~~~~~-------~~~~~~~~~~~vi~v~d~~~ 30 (113)
||||+.+..+ .+..++..+|++++|+|+++
T Consensus 92 DtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 92 DIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 7999877554 56678899999999999975
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.11 E-value=0.21 Score=29.59 Aligned_cols=61 Identities=10% Similarity=-0.023 Sum_probs=39.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~ 65 (113)
|+|+.. .......+..+|.+++++.++.. + ......++.+.+... ..+.++.++.|+.+..
T Consensus 82 D~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 82 DGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp ECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred ECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 566654 33344566679999999988754 3 555566665543221 2356889999999854
No 221
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.22 E-value=0.53 Score=29.90 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=39.1
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
.+..+|.+++|+.++ ..+.......++.+.......+.+++ +|.|+.+.. ...+++.+.++.
T Consensus 176 ~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~~~~~~g~ 238 (307)
T 3end_A 176 PLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDRFCKETNF 238 (307)
T ss_dssp GGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHHHHHHHTC
T ss_pred HHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHHHHHHcCC
Confidence 557899999999765 44666666666666543222456655 899999842 224455555553
No 222
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.70 E-value=0.68 Score=30.80 Aligned_cols=52 Identities=17% Similarity=0.044 Sum_probs=36.7
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+|++++.||+|..+ .+++....... .++.+|+..+.|++.+.+...+.+.
T Consensus 248 ~~~p~i~v~nKid~~~---~eele~l~~~~-------~~~~is~~~e~gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSLS---IEELELLYRIP-------NAVPISSGQDWNLDELLQVMWDRLN 299 (376)
T ss_dssp EEECEEEEEECGGGSC---HHHHHHHTTST-------TEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hccceEEEEecccccC---HHHHHHHhccc-------chhhhhhhhcccchhHHHHHHHHcC
Confidence 4579999999999643 44443332221 2568899999999999888776654
No 223
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.23 E-value=0.2 Score=31.57 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=30.0
Q ss_pred hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 15 YYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
.+.++++.++++|..... ...+ ...++.+.. . +++++++||+|...
T Consensus 108 ~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 108 PDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----V-VNIIPVIAKADTMT 154 (270)
T ss_dssp CCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----T-SEEEEEETTGGGSC
T ss_pred hhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----c-CcEEEEEeccccCC
Confidence 345679999999965321 1111 445555532 2 89999999999755
No 224
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.54 E-value=0.1 Score=35.30 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.8
Q ss_pred CCCeEEEEEeCCCCCC
Q psy17510 51 RDAIILIFANKQDLPD 66 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~ 66 (113)
.++|++++.||+|...
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 5789999999999754
No 225
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.48 E-value=1 Score=27.91 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=34.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~ 64 (113)
|+|+......+.......+|.+|++..++. .+.......++.+.+ .+.+++ ++.|+.+.
T Consensus 135 D~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 135 DLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEE----TNTSVLGLVENMSYF 194 (262)
T ss_dssp ECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHT----TTCCEEEEEETTCCE
T ss_pred ECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHh----CCCCEEEEEECCCcc
Confidence 566543322222222236899999987763 355556666666543 356666 89999873
No 226
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.83 E-value=0.78 Score=27.53 Aligned_cols=50 Identities=8% Similarity=-0.050 Sum_probs=34.7
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
...+..+|.+|+++.++ ..+.......++.+.+. .+.++.++.|+.+...
T Consensus 85 ~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 85 EALADGCDLLVIPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp HHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred HHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 44667899999999876 44566666666665442 2467889999998653
No 227
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.62 E-value=1.8 Score=26.76 Aligned_cols=49 Identities=4% Similarity=-0.096 Sum_probs=33.3
Q ss_pred HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
....+..+|.+|+++.++. .+.......++.+... ..+.++.++.|+..
T Consensus 160 ~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 160 LKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp HHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred HHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 3445667999999998863 4556555665555433 13567889999994
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.06 E-value=1.1 Score=30.27 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCCCccCchh-hHH---h--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-e-EEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRP-LWR---H--YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-I-ILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~-~~~---~--~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~D~~~ 66 (113)
||||...... +.. . ....+|.+++|+|+.... +.......+. ... | ..++.||+|...
T Consensus 187 DT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 187 DTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK-----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp ECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH-----TTSCSCEEEEEECSSSCS
T ss_pred cCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh-----hcccCCeEEEEeCCCCcc
Confidence 7899765432 221 1 122689999999987542 1222233332 234 5 789999999754
No 229
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.76 E-value=2.1 Score=25.74 Aligned_cols=73 Identities=10% Similarity=0.029 Sum_probs=45.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~ 79 (113)
|+|+... ......+..+|.+++++.++ ..+.......++.+.+. ...++-++.|+.+.... ....++.+.++.
T Consensus 118 D~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~ 191 (237)
T 1g3q_A 118 DCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPEAAEDVMEV 191 (237)
T ss_dssp ECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHHHHHHHHCS
T ss_pred ECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHHHHHHhCc
Confidence 4555433 33345677899999999775 44566666666666442 22456789999986433 345566666554
No 230
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=88.57 E-value=1.3 Score=27.13 Aligned_cols=77 Identities=6% Similarity=-0.023 Sum_probs=46.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-----CCCCeEEEEEeCCCCCC-----CCCH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-----MRDAIILIFANKQDLPD-----AMKP 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~D~~~-----~~~~ 70 (113)
|+|+... ......+..+|.+++++.++ ..+.......+..+..... ....++.+|.|+.+... ....
T Consensus 120 D~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~ 196 (260)
T 3q9l_A 120 DSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSM 196 (260)
T ss_dssp ECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCH
T ss_pred cCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccccccccCH
Confidence 5565332 34455667899999999875 4566666666666643210 02257889999987421 1234
Q ss_pred HHHHHHhCCC
Q psy17510 71 HEIQEKLGLT 80 (113)
Q Consensus 71 ~~~~~~~~~~ 80 (113)
+++.+.++..
T Consensus 197 ~~~~~~~~~~ 206 (260)
T 3q9l_A 197 EDVLEILRIK 206 (260)
T ss_dssp HHHHHHHCSE
T ss_pred HHHHHHhCCc
Confidence 5666666543
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.42 E-value=1.1 Score=30.46 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=33.1
Q ss_pred CCCCccCchh-hHH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRP-LWR-----HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~-~~~-----~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||+|...... +.. .....+|.+++|+|+...... ......+... -.+..+|.||.|...
T Consensus 189 DTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 189 DTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSA 253 (443)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCS
T ss_pred ECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcc
Confidence 7888644321 111 123357999999999754322 2222333221 135578999999753
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.96 E-value=1.6 Score=27.95 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=34.3
Q ss_pred CCCCccC--ch-hhHH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCC
Q psy17510 1 DVGGQDK--IR-PLWR-----HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~--~~-~~~~-----~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~ 66 (113)
||||... .. .+.. .....+|.+++|+|+... .+.....+.+.. ..| ..++.||.|...
T Consensus 187 DTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 187 DTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp ECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGGGCT
T ss_pred eCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCCCCc
Confidence 7898876 32 2221 124478999999998643 222222333321 245 678999999643
No 233
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=85.48 E-value=2.2 Score=26.27 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=35.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHH---HHHHHHcCcCCCCCeEE-EEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAIIL-IFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~i-lv~nK~D~~~ 66 (113)
|+|+.... .....+..+|.+|+++.++. .+...... .++.+.+. ...+.+++ ++.|+.+...
T Consensus 118 D~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 118 DAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp ECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBCTTC
T ss_pred eCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeECCCc
Confidence 56654332 22334567999999998864 34444333 33333221 11356764 8999998643
No 234
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=85.14 E-value=2.1 Score=26.34 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=36.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
|+|+... ......+..+|.+|+++.++ ..+.......++.+.+. ...++-++.|+.+..
T Consensus 117 D~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 117 DAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTL 175 (263)
T ss_dssp ECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred eCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCcc
Confidence 5555433 33344566789999998765 34555555555555432 224567899999854
No 235
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.92 E-value=1.8 Score=26.15 Aligned_cols=60 Identities=13% Similarity=-0.025 Sum_probs=35.4
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
...+..+|.+++++.++ ..++.......+..... ....+.++.|+.+.. ...+++.+.++
T Consensus 148 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~~v~N~~~~~--~~~~~~~~~~~ 207 (254)
T 3kjh_A 148 RGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL---GIKKVRYVINKVRNI--KEEKLIKKHLP 207 (254)
T ss_dssp HHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCSCEEEEEEEECCH--HHHHHHHHHSC
T ss_pred HHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc---CCccEEEEEeCCCCh--hHHHHHHHHhc
Confidence 33557899999999875 44555555544433221 224678999999831 12334555544
No 236
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.82 E-value=3 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=29.3
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLP 65 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~ 65 (113)
...+|.+++|+.... .+.......++.+.+ .+.+++ +|.|+.+..
T Consensus 212 ~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 212 SKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred HHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 346899999998764 345555555555543 345655 899999853
No 237
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.12 E-value=2.9 Score=28.39 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=25.0
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
..+.+++|+|+............+.+. -.+..++.||.|..
T Consensus 211 ~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT 251 (433)
T ss_dssp CCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred CCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence 468999999997543222222222221 13567899999964
No 238
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=78.94 E-value=9.9 Score=24.06 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=30.3
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
....+|++++|+..... +.......++.+.+. ....+-+|.|+.+...
T Consensus 221 l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 221 VGRHVGTTLMVARYAVN-TLKEVETSLSRFEQN---GIPVKGVILNSIFRRA 268 (286)
T ss_dssp HTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred HHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence 45568999999987643 445555555555432 2234568899998543
No 239
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=78.43 E-value=4.5 Score=24.10 Aligned_cols=51 Identities=6% Similarity=0.042 Sum_probs=31.5
Q ss_pred HHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 12 WRHYYTGTQGLIFVVDCAD---RDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
+..-+..||++|++..-=+ +..+.....|+..........++|+.++..=.
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~ 114 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSP 114 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEES
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCC
Confidence 3456889999999874433 33455555555322223345789999887644
No 240
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=76.66 E-value=6 Score=24.31 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=28.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCCC
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDL 64 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~ 64 (113)
..+|.+++++.++ ..+.......++.+.......+.++ -++.|+.+.
T Consensus 139 ~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 139 GKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred hhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 4689999998775 4455555555554433211124554 688999873
No 241
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=75.67 E-value=3.1 Score=29.39 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=31.6
Q ss_pred hhhHHhhhcCCcEEE-EEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 9 RPLWRHYYTGTQGLI-FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
..+...|.+....++ ++.+.+....-.....+...+. ..+.+.++|+||.|+.+.
T Consensus 174 ~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~----~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 174 KTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD----PEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC----SSCCSEEEEEECGGGSSS
T ss_pred HHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh----hcCCceEEEecchhhcCc
Confidence 345566666654444 4444432222223445555552 246799999999997653
No 242
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=75.50 E-value=9.9 Score=22.80 Aligned_cols=53 Identities=11% Similarity=0.278 Sum_probs=32.0
Q ss_pred CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 7 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 7 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
..++..+.-+.+++.+|+++.-.-..+ ......++.... ..++|+|+|--..+
T Consensus 68 tIKrrLReRI~~Sk~vIllIs~~T~~s-~~v~wEIe~Ai~---~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 68 TLKPRLHTRLDNSKNIILFLSSITANS-RALREEMNYGIG---TKGLPVIVIYPDYD 120 (189)
T ss_dssp THHHHHHHHHHTEEEEEEECCTTCCCC-HHHHHHHHHHTT---TTCCCEEEEETTCC
T ss_pred HHHHHHHHHHHhcCcEEEEEecCcccc-chhHHHHHHHHH---hcCCcEEEEECCcc
Confidence 334445557788999888885443222 344445555542 26899988876544
No 243
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=71.82 E-value=4.1 Score=27.25 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=21.9
Q ss_pred CCCCc-------cCchhhHHhhhcCCcEEEEEEECCC
Q psy17510 1 DVGGQ-------DKIRPLWRHYYTGTQGLIFVVDCAD 30 (113)
Q Consensus 1 D~~G~-------~~~~~~~~~~~~~~~~vi~v~d~~~ 30 (113)
|+||. +.+...+..++..+|++++|+|+.+
T Consensus 91 D~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 91 DIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred eccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67773 3344456667789999999999864
No 244
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=70.50 E-value=14 Score=24.96 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=33.1
Q ss_pred CCCCccCch-hhHH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIR-PLWR-----HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~-~~~~-----~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~ 67 (113)
||||..... .+.. .....++.+++|+|+..... .......+.. ..+ .-++.||.|....
T Consensus 190 DTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 190 DTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE-----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp ECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-----HSCCCCEEEECTTSSSC
T ss_pred ECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-----cCCCeEEEEecCCCCcc
Confidence 789875542 2222 12447899999999875322 2222222211 233 3479999997543
No 245
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=68.66 E-value=14 Score=21.98 Aligned_cols=49 Identities=2% Similarity=0.053 Sum_probs=30.7
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHc--CcCCCCCeEEEEEeC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN--DREMRDAIILIFANK 61 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~ilv~nK 61 (113)
..-+..||++|++...=+..--.....|+..+.. .....++|+.++.+-
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 3457789999999855443222233455555543 124578999998875
No 246
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=68.38 E-value=5.1 Score=26.98 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=35.5
Q ss_pred CCCeEEEEEeCCCCC---------CCCCHHHHHHHhCCCc-----cC-CCCeEEEeccc--cCCCCHHHHHHHHHhhc
Q psy17510 51 RDAIILIFANKQDLP---------DAMKPHEIQEKLGLTR-----IR-DRNWYVQPSCA--TTADGLYEGLTWLTSNH 111 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~---------~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~sa--~~~~~i~~~~~~l~~~~ 111 (113)
.++|+++|.||.|+. +.....++.+.+.... .. .....++.+|+ .++.|++++.+.+...+
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 368999999999852 1223333322221100 00 01224677788 77778999999887665
No 247
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=67.61 E-value=10 Score=20.65 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=26.7
Q ss_pred hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
+..|+.| ...|++++|.. .+ -+++..++++... .+..++++.|..|
T Consensus 69 reiwery-pqldvvvivtt-dd---kewikdfieeake----rgvevfvvynnkd 114 (162)
T 2l82_A 69 REIWERY-PQLDVVVIVTT-DD---KEWIKDFIEEAKE----RGVEVFVVYNNKD 114 (162)
T ss_dssp HHHHHHC-TTCCEEEEEEC-CC---HHHHHHHHHHHHH----TTCEEEEEEECSC
T ss_pred HHHHHhC-CCCcEEEEEec-Cc---HHHHHHHHHHHHh----cCcEEEEEecCCC
Confidence 4456655 55677666652 22 2334444444433 6888888887666
No 248
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=67.48 E-value=14 Score=23.45 Aligned_cols=45 Identities=9% Similarity=-0.063 Sum_probs=25.5
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLP 65 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~ 65 (113)
...+|.+++|...... +.......++.+.+. +.+ .-+|.|+.+..
T Consensus 234 ~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 234 GRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA----GVNIKGAILNGVIKR 279 (299)
T ss_dssp GGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT----TCCCCCEEEEECCCC
T ss_pred HHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC----CCCeEEEEEeCCccC
Confidence 3568888888877542 333334444444331 233 34777998854
No 249
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=67.31 E-value=14 Score=23.01 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=27.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCC
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 64 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~ 64 (113)
..+|.+++++.++ ..+.......++.+.+.....+.+ .-++.|+.+.
T Consensus 142 ~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 142 NKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred hhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 4689999988765 345555544444443211113455 4678899863
No 250
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=65.53 E-value=12 Score=20.24 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=25.1
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
-+++++++|+++.... ..-+.....++...+ .++|++.|--.
T Consensus 35 ~I~~~~~vIvL~G~~t-~~s~wv~~EI~~A~~----~gkpIigV~~~ 76 (111)
T 1eiw_A 35 TPEDADAVIVLAGLWG-TRRDEILGAVDLARK----SSKPIITVRPY 76 (111)
T ss_dssp CSSSCSEEEEEGGGTT-TSHHHHHHHHHHHTT----TTCCEEEECCS
T ss_pred ccccCCEEEEEeCCCc-CCChHHHHHHHHHHH----cCCCEEEEEcC
Confidence 4678999998886542 223344444444432 68898776543
No 251
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=64.28 E-value=17 Score=21.38 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=32.3
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC---------cCCCCCeEEEEEeCCC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND---------REMRDAIILIFANKQD 63 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~ilv~nK~D 63 (113)
..-+..||++|+....=+..--.....|+..+... ....++|+.++.+--.
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg 121 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANG 121 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCC
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCC
Confidence 34677899999987554332233345666666531 2357899988877654
No 252
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=63.80 E-value=24 Score=22.00 Aligned_cols=51 Identities=6% Similarity=0.027 Sum_probs=29.0
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--cCCCCCe-EEEEEeCCCCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND--REMRDAI-ILIFANKQDLPD 66 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p-~ilv~nK~D~~~ 66 (113)
.+..+|.+|+++.++. .+.......++.+... ....+.+ +-++.|+.|...
T Consensus 173 ~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 173 AIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp HHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred HHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 3446899999997753 3444444333333211 0013566 458999998644
No 253
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=63.79 E-value=18 Score=21.45 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=31.2
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
..-+..||++|+....=+..--.....|+..+.. ....++|+.++.+=
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~-~~l~gK~~~~v~t~ 127 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDILDT-DALTGMPTIIAATA 127 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT-TTTTTCEEEEEEEE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh-hhcCCCEEEEEEeC
Confidence 3467789999999866543323334556665533 34578999988873
No 254
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=63.35 E-value=19 Score=20.96 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=24.4
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEE
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 59 (113)
.+..||++|.++|...+++-. .-.+-.... .++|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GT--a~EiGyA~a----lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGS--AFXIGFMRA----MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHH--HHHHHHHHH----TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCc--eeehhhHhh----CCCeEEEEE
Confidence 577899999999976543322 111222221 579998874
No 255
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=62.78 E-value=7.9 Score=22.63 Aligned_cols=48 Identities=6% Similarity=0.064 Sum_probs=29.6
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--cCCCCCeEEEEEeCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND--REMRDAIILIFANKQ 62 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~ 62 (113)
-+..+|++|+....=...--.....|+..+... ....++|+.++++--
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~g 118 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASA 118 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECS
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCC
Confidence 567899999987443322223345666666432 134688999988863
No 256
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=62.68 E-value=5 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=18.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA 29 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~ 29 (113)
|+|+.. .......+..+|.+|+++.++
T Consensus 110 D~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 110 DTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp ECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 566553 334455677899999999876
No 257
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=59.19 E-value=19 Score=21.19 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=32.3
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCCCCCeEEEEEeCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REMRDAIILIFANKQ 62 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~ 62 (113)
.-+..||++|+.+..=...--.....|+..+... ....+++++++.+--
T Consensus 69 ~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 69 DLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 3567899999998765433334456777777431 134678988887754
No 258
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=59.08 E-value=25 Score=20.73 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=29.5
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHc--CcCCCCCeEEEEEeC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN--DREMRDAIILIFANK 61 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~ilv~nK 61 (113)
..-+..||++|++...=+..--.....++..+.. .....++|+.++.+-
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s 117 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSS 117 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEEC
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeC
Confidence 3457789999998855432222223444444433 123578999998874
No 259
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=57.94 E-value=21 Score=20.53 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=25.6
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
.+.+||++|.++|..++++-. .-.+-... ..++|++++..+-
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT--~~EiGyA~----A~gkPVv~~~~~~ 116 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGL--GMELGYAL----SQGKYVLLVIPDE 116 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHH--HHHHHHHH----HTTCEEEEEECGG
T ss_pred HHHhCCEEEEEcCCCCCCccH--HHHHHHHH----HCCCeEEEEEcCC
Confidence 578999999999865433222 22222222 1579998886544
No 260
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=57.70 E-value=20 Score=22.26 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=30.6
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC----cCCCCCeEEEEEeC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND----REMRDAIILIFANK 61 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ilv~nK 61 (113)
.-+..||++|++...=+..--.....|+..+... ....++|+.++.+-
T Consensus 94 ~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 94 ELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp HHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 4567899999998665433233344555555321 23578999988874
No 261
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=56.71 E-value=22 Score=24.10 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=21.4
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHH
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRII 45 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~ 45 (113)
..++..+.+.++|+|.++. +.+.-..|...+.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~ 146 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGE 146 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence 5577778899999999976 3343345555443
No 262
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=56.46 E-value=26 Score=20.37 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=24.6
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
.+..||++|.++|...+++-. .-.+-.... .++|++++.+..
T Consensus 66 ~i~~aD~viA~ldg~~~D~Gt--~~EiG~A~a----~gkPVi~~~~D~ 107 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTIDAGV--ASEIGVAYA----KGIPVVALYTDS 107 (162)
T ss_dssp HHHTCSEEEEECCSSSCCHHH--HHHHHHHHH----TTCCEEEECCCG
T ss_pred HHHHCCEEEEECCCCCCCCCH--HHHHHHHHH----CCCEEEEEEcCc
Confidence 578999999999865332211 111222221 578988776543
No 263
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=55.81 E-value=30 Score=20.54 Aligned_cols=50 Identities=8% Similarity=0.038 Sum_probs=32.3
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--------cCCCCCeEEEEEeCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND--------REMRDAIILIFANKQD 63 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~D 63 (113)
.-+..||++|+.+..=...--.....|+..+... ....+++++++.+--.
T Consensus 54 ~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~ 111 (192)
T 3f2v_A 54 KLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGA 111 (192)
T ss_dssp HHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESS
T ss_pred HHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCC
Confidence 3567899999998765433333446777776431 2346788888777543
No 264
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=53.62 E-value=30 Score=20.04 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=30.2
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--cCCCCCeEEEEEeCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND--REMRDAIILIFANKQ 62 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~ 62 (113)
-+..+|++|+....-...-......|+..+... ....++|+.++++--
T Consensus 49 ~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g 98 (188)
T 2ark_A 49 DVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSG 98 (188)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEES
T ss_pred HHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECC
Confidence 345789999998765433334455666665430 124678998888853
No 265
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=52.78 E-value=27 Score=21.82 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=32.2
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCCCCCeEEEEEeCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REMRDAIILIFANKQD 63 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~D 63 (113)
-+..||++|+.+-.=...--.....|+..+... ....+++++++.+--.
T Consensus 90 ~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 90 KLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 377899999999775433333446777776431 2246789888887544
No 266
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=50.86 E-value=35 Score=19.92 Aligned_cols=49 Identities=6% Similarity=-0.007 Sum_probs=30.5
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHc-------CcCCCCCeEEEEEeCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIN-------DREMRDAIILIFANKQ 62 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~p~ilv~nK~ 62 (113)
.-+..||++|+.+..=....-.....|+..+.. .....+++++++.+--
T Consensus 47 ~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g 102 (177)
T 3ha2_A 47 SLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTG 102 (177)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEES
T ss_pred HHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCC
Confidence 356789999999876432222334566666532 1234678888887754
No 267
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=50.85 E-value=21 Score=20.68 Aligned_cols=49 Identities=2% Similarity=0.024 Sum_probs=30.7
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCCCCCeEEEEEeCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REMRDAIILIFANKQ 62 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~ 62 (113)
.-+..+|++|+.+..=...--.....|+..+... ....++|++++.+--
T Consensus 82 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g 142 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRG 142 (201)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECS
T ss_pred HHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecC
Confidence 3567899999998654332223345677776421 124678998888743
No 268
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=48.92 E-value=28 Score=18.68 Aligned_cols=45 Identities=2% Similarity=0.132 Sum_probs=26.6
Q ss_pred hcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 16 YTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
+..+|+++++...-...... ....++..+.. ...++|+.++++--
T Consensus 44 l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t~g 90 (137)
T 2fz5_A 44 VASKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGSYG 90 (137)
T ss_dssp HHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEEES
T ss_pred HhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEecC
Confidence 56789998887553211111 24455555532 24678999888743
No 269
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=48.78 E-value=29 Score=20.52 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=31.7
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHc----------------CcCCCCCeEEEEEeCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIN----------------DREMRDAIILIFANKQ 62 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~~p~ilv~nK~ 62 (113)
-+..||++|+....=...--.....|+..+.. .....+++++++.+--
T Consensus 84 ~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g 147 (212)
T 3r6w_A 84 ELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRG 147 (212)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECS
T ss_pred HHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecC
Confidence 57789999999876543333445677777732 1134678888888755
No 270
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=48.38 E-value=39 Score=20.53 Aligned_cols=49 Identities=8% Similarity=-0.001 Sum_probs=31.9
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCCCCCeEEEEEeCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REMRDAIILIFANKQD 63 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~D 63 (113)
-+..||++|+.+-.-...--.....|+..+... ....+++++++.+--.
T Consensus 89 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~ 149 (228)
T 3tem_A 89 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 149 (228)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSS
T ss_pred HHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCC
Confidence 467899999999765432233345677766421 2346889888887654
No 271
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=45.95 E-value=35 Score=19.98 Aligned_cols=48 Identities=4% Similarity=-0.047 Sum_probs=30.6
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCCCCCeEEEEEeCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REMRDAIILIFANKQ 62 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~ 62 (113)
-+..||++|+.+..=...--.....|+..+... ....+++++++.+--
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 150 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNG 150 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEES
T ss_pred HHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecC
Confidence 467899999998765433333446677776431 123678888887643
No 272
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=45.90 E-value=44 Score=22.61 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCCccCch-hhHH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCC
Q psy17510 1 DVGGQDKIR-PLWR-----HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~-~~~~-----~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~ 65 (113)
||||..... .+.. ...-.++.+++|+|+... .+.......+.. .. ..-+|.||.|..
T Consensus 187 DTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~-----~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDE-----KVGVTGLVLTKLDGD 250 (425)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHH-----HTCCCEEEEESGGGC
T ss_pred cCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHh-----cCCceEEEEeCcCCc
Confidence 788865432 1221 112258889999998643 222222333321 12 246788999864
No 273
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=45.88 E-value=36 Score=20.64 Aligned_cols=48 Identities=6% Similarity=-0.000 Sum_probs=29.1
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC---cCCCCCeEEEEEeCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND---REMRDAIILIFANKQ 62 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~ 62 (113)
-+..||++|+....=...-......|+..+... ....++|++++.+--
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g 126 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAE 126 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEES
T ss_pred HHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCC
Confidence 467899999998665432223344555554221 134678988877653
No 274
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=45.40 E-value=28 Score=20.37 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=27.6
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEe
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 60 (113)
-+..+|++|++...=...-......++..+. .....++|+.++++
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~-~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDILP-QFALAGKAALPLAT 110 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTTSC-TTTTTTCEEEEEEE
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHhcc-ccccCCCEEEEEEE
Confidence 4668999999986644322222334444442 12346899999988
No 275
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=45.32 E-value=35 Score=19.54 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=29.2
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
+.+|++.|-- -.+..+..+.++.+.+ .++|.++++.-.+
T Consensus 26 ~p~ILitdkK-Is~i~~llP~LE~v~~----~~~pLlIIAedve 64 (145)
T 1srv_A 26 DAFILIVEKK-VSNVRELLPILEQVAQ----TGKPLLIIAEDVE 64 (145)
T ss_dssp EEEEEEESSE-ECCHHHHHHHHHHHHT----TTCCEEEEESEEC
T ss_pred ccEEEEeccc-ccCHHHHHHHHHHHHH----HCCCEEEEecccc
Confidence 6778887643 2457888899999876 4689999886665
No 276
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=44.24 E-value=16 Score=20.93 Aligned_cols=48 Identities=6% Similarity=0.091 Sum_probs=28.2
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
.-+..+|++|+....=+..-......++..+.. ....++|+.++++-.
T Consensus 59 ~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~-~~~~gK~~~~~~~sg 106 (174)
T 3gfs_A 59 QRVTKADAIVLLSPEYHSGMSGALKNALDFLSS-EQFKYKPVALLAVAG 106 (174)
T ss_dssp HHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCH-HHHTTCEEEEEEECC
T ss_pred HHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCH-hhhCCCcEEEEEECC
Confidence 356789999999866543222333344433311 123679998888654
No 277
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=43.45 E-value=16 Score=20.86 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=27.2
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC----------cCCCCCeEEEEEeC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIND----------REMRDAIILIFANK 61 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~----------~~~~~~p~ilv~nK 61 (113)
-+..+|++|+.+..=...--.....|+..+... ....++|++++.+-
T Consensus 68 ~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~ 124 (184)
T 1rli_A 68 RILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVG 124 (184)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEE
T ss_pred HHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeC
Confidence 567899999998765422222233444443210 01257898888873
No 278
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=43.11 E-value=47 Score=19.17 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=24.9
Q ss_pred hhhcCCcEEEEEEEC---CChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 14 HYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
..+..||++|.++|+ ..+++ .+...+-.... .++|++++.+..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~--GTafEiGyA~A----lgKPVi~l~~d~ 108 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDC--GTAFEVGCAAA----LNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCH--HHHHHHHHHHH----TTCEEEEECSCC
T ss_pred HHHHhCCEEEEEecCCCCCCCCC--cHHHHHHHHHH----CCCEEEEEEcCc
Confidence 467789999999984 22211 12222222221 579999887543
No 279
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=42.47 E-value=48 Score=19.07 Aligned_cols=46 Identities=11% Similarity=0.158 Sum_probs=28.8
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEe
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 60 (113)
..-+..||++|+....=...--.....|+..+.. ...++|++++.+
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~~ 124 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVSY 124 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEEe
Confidence 3467789999999876543222334455655532 246788887754
No 280
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=42.46 E-value=66 Score=20.93 Aligned_cols=46 Identities=9% Similarity=0.118 Sum_probs=32.8
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
..+.+.|++++.-- .++++++..++..+... .++|+++.+......
T Consensus 69 ~~~~~~dG~VItHG---TDTmeeTA~~Ls~ll~~---~~kPVVlTGAqrP~~ 114 (328)
T 1wls_A 69 KEVWEYDGIVITHG---TDTMAYSASMLSFMLRN---PPIPIVLTGSMLPIT 114 (328)
T ss_dssp HHTTTCSEEEEECC---GGGHHHHHHHHHHHEES---CSSEEEEECCSSCTT
T ss_pred HHhccCCeEEEEcC---CchHHHHHHHHHHHHhC---CCCCEEEECCCCCCC
Confidence 34567899877542 46788888888765443 578999999877643
No 281
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=42.22 E-value=39 Score=19.52 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=28.1
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHc---CcCCCCCeEEEEEeCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIN---DREMRDAIILIFANKQD 63 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~D 63 (113)
-+..+|++|+....-...-......|+..+.. .....++|+.++++---
T Consensus 68 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~ 119 (200)
T 2a5l_A 68 DLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTAS 119 (200)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSC
T ss_pred HHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCC
Confidence 45689999999866442222223344444321 01246789888887543
No 282
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=41.89 E-value=27 Score=20.56 Aligned_cols=18 Identities=17% Similarity=0.469 Sum_probs=12.4
Q ss_pred HhhhcCCcEEEEEEECCC
Q psy17510 13 RHYYTGTQGLIFVVDCAD 30 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~ 30 (113)
+..+.++|++|.++|...
T Consensus 125 ~~mvd~sD~liavyDg~~ 142 (181)
T 2nx2_A 125 QFFIDKSDGLLLLYDPEK 142 (181)
T ss_dssp HHHHHHSSEEEEECCTTT
T ss_pred HHHHHHCCEEEEEEcCCC
Confidence 345667888888887543
No 283
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=39.37 E-value=46 Score=17.95 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=26.8
Q ss_pred hhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 15 YYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
-+..+|++++....-...... ....++..+... ..++++.++++-
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t~ 88 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGSY 88 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEec
Confidence 356789998887653221111 244555555332 467899888874
No 284
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=39.17 E-value=47 Score=20.17 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=29.5
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
+.+|++.|-- -.+..+..+.++.+.+ .+.|.++++.-.+
T Consensus 39 ~p~ILitdkK-Is~i~~ilP~LE~v~~----~~rpLlIIAEDve 77 (201)
T 3osx_A 39 NPYILLVDKK-ISNIRELLPVLEGVAK----ASKPLVIIAEDVE 77 (201)
T ss_dssp SCEEEEEEEE-ECCHHHHHHHHHHHHT----SSCCEEEEEEEEC
T ss_pred CCeEEEEcCc-cCCHHHHHHHHHHHHH----hCCCeEEEecccc
Confidence 6788888743 2457788888998876 4689999987766
No 285
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=38.82 E-value=44 Score=21.25 Aligned_cols=49 Identities=6% Similarity=0.129 Sum_probs=29.4
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC----cCCCCCeEEEEEeC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND----REMRDAIILIFANK 61 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ilv~nK 61 (113)
..-+..||++|++...=+..--.....++..+... ....++|+.++.+-
T Consensus 118 ~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ts 170 (279)
T 2fzv_A 118 RALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVS 170 (279)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEEC
Confidence 34567899999988554322223334555554321 23478999888874
No 286
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=38.79 E-value=60 Score=21.44 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=32.7
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
..+.+.|++++.-- .++++++..++..+.+. .++|+++.+.....
T Consensus 97 ~~~~~~dG~VItHG---TDTmeeTA~~Ls~~l~~---~~kPVVlTGAmrP~ 141 (358)
T 2him_A 97 AHYDDYDGFVILHG---TDTMAYTASALSFMLEN---LGKPVIVTGSQIPL 141 (358)
T ss_dssp HHGGGCSEEEEECC---STTHHHHHHHHHHHEET---CCSCEEEECCSSCT
T ss_pred HHHhcCCeEEEecC---chHHHHHHHHHHHHHhc---CCCCEEEeCCCCCC
Confidence 34557899877552 35688888888887653 47899999987764
No 287
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=36.70 E-value=74 Score=20.33 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=28.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 144 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISER---TDLGIVVY 144 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 4789988886554445677788888888653 46887763
No 288
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=36.60 E-value=76 Score=20.08 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=27.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilY 133 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH---TDLPQILY 133 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988886554445677778888888653 46887763
No 289
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=36.28 E-value=29 Score=19.60 Aligned_cols=55 Identities=15% Similarity=0.049 Sum_probs=28.8
Q ss_pred chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 8 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 8 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
+.......+..++.+|+|+..+--.+ .++...+..+.......+..++.|.-+.|
T Consensus 63 ~~~~i~~ai~~s~~~i~v~S~~y~~S-~wc~~El~~~~~~~~~~~~~iiPV~~~v~ 117 (154)
T 3h16_A 63 LRRSIDKGLGSSRFGIVVLSTHFFKK-EWPQKELDGLFQLESSGRSRILPIWHKVS 117 (154)
T ss_dssp HHHHHHHHHTSEEEEEEEEEHHHHTT-CCCHHHHHHHTCCCTTSCCCEEEEEESCC
T ss_pred HHHHHHHHHHhCcEEEEEeCcchhcC-hHHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 33344567888999999986431110 11223334443332223456677766665
No 290
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=35.51 E-value=74 Score=20.28 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=28.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 144 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAES---TPLPVMLY 144 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHT---CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988887655455667778888888664 46887763
No 291
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=35.21 E-value=82 Score=20.12 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=28.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+.+....+++.+.+. .+.|+++-
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 147 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADA---TELPMLLY 147 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTS---CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988886554445677778888888664 47898775
No 292
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=34.37 E-value=55 Score=20.94 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=22.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
..+.+++|+|.... .+.....+.+.+. .+ ..-++.||.|...
T Consensus 222 ~p~~vllVlda~t~---~~~l~~a~~~~~~---~~-i~gvVlTk~D~~~ 263 (306)
T 1vma_A 222 APHETLLVIDATTG---QNGLVQAKIFKEA---VN-VTGIILTKLDGTA 263 (306)
T ss_dssp CCSEEEEEEEGGGH---HHHHHHHHHHHHH---SC-CCEEEEECGGGCS
T ss_pred CCcEEEEEEECCCC---HHHHHHHHHHHhc---CC-CCEEEEeCCCCcc
Confidence 47889999998632 1222222233221 12 2356779999643
No 293
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=34.04 E-value=75 Score=20.24 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=28.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+.+....+++.+.+. .+.|+++-
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilY 136 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADA---VEIPVVIY 136 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEE
Confidence 4789998887655555677778888888654 45887764
No 294
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=33.48 E-value=81 Score=20.27 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=23.3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~ 66 (113)
.+|.+++|++.... .+.. ...+.+. ... ..-+|.||.|...
T Consensus 227 ~~d~vllVl~a~~~--~~~l-~~~~~~~-----~~~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 227 APHEVLLVIDATTG--QNGV-IQAEEFS-----KVADVSGIILTKMDSTS 268 (320)
T ss_dssp CCSEEEEEEEGGGT--HHHH-HHHHHHT-----TTSCCCEEEEECGGGCS
T ss_pred CCceEEEEEECCCc--HHHH-HHHHHHh-----hcCCCcEEEEeCCCCCC
Confidence 47899999988732 2222 2223331 122 3357899999643
No 295
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=33.26 E-value=70 Score=18.30 Aligned_cols=45 Identities=4% Similarity=-0.134 Sum_probs=29.3
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
-+...|.+++.+.+-..........++..+ ...+++++++++-.-
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g~ 128 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH----SLKGKTVVPFATSGG 128 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS----CCTTSEEEEEEECSS
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc----CCCcCEEEEEEecCC
Confidence 356789999998764322223345555554 246789999888753
No 296
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=32.71 E-value=83 Score=20.55 Aligned_cols=39 Identities=5% Similarity=0.200 Sum_probs=28.0
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiilY 163 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADS---VTLPVMLY 163 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHT---CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988886554445677778888888664 46887763
No 297
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=32.40 E-value=58 Score=18.78 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=27.7
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHH---cCcCCCCCeEEEEEeCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRII---NDREMRDAIILIFANKQD 63 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~p~ilv~nK~D 63 (113)
-+..+|++|+....-...-......|+..+. ......++|+.++++--.
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEAST 118 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSS
T ss_pred HHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCC
Confidence 4567999999886643222222334444431 112346789888877443
No 298
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=32.22 E-value=1e+02 Score=20.30 Aligned_cols=17 Identities=12% Similarity=-0.086 Sum_probs=12.9
Q ss_pred HhhhcCCcEEEEEEECC
Q psy17510 13 RHYYTGTQGLIFVVDCA 29 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~ 29 (113)
...+..+|.+|++..++
T Consensus 264 ~~al~~aD~vliv~~p~ 280 (403)
T 3ez9_A 264 LNGLAASDLLLTPTPPA 280 (403)
T ss_dssp HHHHHHCSEEEEEECSS
T ss_pred HHHHHHCCEEEEEecCc
Confidence 34556899999999775
No 299
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=32.22 E-value=63 Score=18.77 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=27.5
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHH---cCcCCCCCeEEEEEeCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRII---NDREMRDAIILIFANKQ 62 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~p~ilv~nK~ 62 (113)
.-+..+|++|+....-...--.....++..+. ......++|+.++++--
T Consensus 50 ~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g 101 (193)
T 3d7n_A 50 AALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSA 101 (193)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECC
Confidence 35668999999875532221222334444432 11234678988888753
No 300
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=32.21 E-value=69 Score=20.28 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=27.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 132 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQE---VDIPIIIY 132 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988886554445677778888888653 46887763
No 301
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=31.65 E-value=1.2e+02 Score=20.37 Aligned_cols=50 Identities=2% Similarity=-0.030 Sum_probs=32.8
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--------cCCCCCeEEEEEeCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND--------REMRDAIILIFANKQD 63 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~D 63 (113)
.-+..||++|+.+..=....-.....|+..+... ....+++++++.+--.
T Consensus 288 ~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~ 345 (413)
T 3l9w_A 288 EALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGG 345 (413)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSS
T ss_pred HHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCC
Confidence 3577899999999765433333446777777431 1346789888877543
No 302
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=31.63 E-value=70 Score=20.20 Aligned_cols=39 Identities=8% Similarity=0.311 Sum_probs=27.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+... .+.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilY 132 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAES---INLPIVLY 132 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988886554445667778888888653 46887763
No 303
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=30.74 E-value=74 Score=20.12 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=27.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilY 132 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAA---STIPIIVY 132 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 4789988887654445667778888888653 46887763
No 304
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=30.47 E-value=78 Score=20.02 Aligned_cols=39 Identities=10% Similarity=0.251 Sum_probs=27.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+... .+.|+++-
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiilY 133 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEA---VELPLILY 133 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988886554445667778888888654 47898764
No 305
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=30.38 E-value=80 Score=18.09 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=25.4
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
..+..||++|..++..+. .-..+ +-.... .++|++++.++.+
T Consensus 73 ~~i~~aD~vva~~~~~d~---Gt~~E-iGyA~a----lgKPVi~l~~~~~ 114 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSL---GVGYE-LGRAVA----LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHCSEEEEECSSCCH---HHHHH-HHHHHH----TCSSEEEEECTTT
T ss_pred HHHHhCCEEEEECCCCCC---CHHHH-HHHHHH----CCCEEEEEEcCCC
Confidence 357889999998873332 11122 222221 5799999877664
No 306
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=30.28 E-value=69 Score=17.31 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=13.4
Q ss_pred HHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 39 QELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 39 ~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
.+++.+.+.+.....|++++....+
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 68 ALCRWLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp HHHHHHHHSTTTTTSCEEEEECCCS
T ss_pred HHHHHHHhCCCcCCCCEEEEECCCC
Confidence 3444444433335678777765444
No 307
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=30.14 E-value=77 Score=20.18 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=27.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 140 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQS---VDIPVLLY 140 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 4789988886554445667778888888654 47898764
No 308
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=30.13 E-value=79 Score=20.19 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=27.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiilY 148 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAA---TEVPICLY 148 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988886554445667778888888653 46887763
No 309
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=30.08 E-value=54 Score=19.22 Aligned_cols=48 Identities=6% Similarity=0.070 Sum_probs=26.7
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHc---CcCCCCCeEEEEEeCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIIN---DREMRDAIILIFANKQ 62 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~ 62 (113)
-+..+|++|+....-...-......|+..+.. .....++|+.++++--
T Consensus 75 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g 125 (211)
T 1ydg_A 75 DLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQ 125 (211)
T ss_dssp HHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCC
Confidence 45679999998755332212223444444321 1224678888877743
No 310
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=30.02 E-value=78 Score=20.06 Aligned_cols=39 Identities=3% Similarity=-0.058 Sum_probs=27.2
Q ss_pred cCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-.. .+-+....+++.+.+. .+.|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiilY 129 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEV---SPHPVYLY 129 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhh---CCCCEEEE
Confidence 478998888655444 5667778888888653 46787763
No 311
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=29.87 E-value=67 Score=16.99 Aligned_cols=39 Identities=8% Similarity=0.136 Sum_probs=20.1
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 23 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 23 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
++++|..-+. .+...++..+.+.....+.|++++....+
T Consensus 54 lii~D~~l~~--~~g~~~~~~lr~~~~~~~~pii~~s~~~~ 92 (144)
T 3kht_A 54 LIILDIGLPI--ANGFEVMSAVRKPGANQHTPIVILTDNVS 92 (144)
T ss_dssp EEEECTTCGG--GCHHHHHHHHHSSSTTTTCCEEEEETTCC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 4445654332 12244555565433346778887765544
No 312
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=29.41 E-value=80 Score=20.30 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=27.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 155 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEA---VAIPQILY 155 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---SCSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988886544445667778888888654 47898774
No 313
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=29.34 E-value=93 Score=18.46 Aligned_cols=49 Identities=6% Similarity=0.038 Sum_probs=30.6
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCCCCCeEEEEEeCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REMRDAIILIFANKQ 62 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~ 62 (113)
.-+..||++|+....=...--.....|+..+... ....+++++++.+--
T Consensus 88 ~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g 148 (211)
T 3p0r_A 88 NQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARG 148 (211)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEES
T ss_pred HHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCC
Confidence 3577899999998765433233345666666431 124678888877643
No 314
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=29.05 E-value=82 Score=20.29 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=27.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+... .+.|+++-
T Consensus 116 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilY 154 (315)
T 3si9_A 116 AGADAVLVVTPYYNRPNQRGLYTHFSSIAKA---ISIPIIIY 154 (315)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHc---CCCCEEEE
Confidence 4789988886554445667778888888654 46898775
No 315
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=28.72 E-value=44 Score=19.25 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=27.3
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHc---CcCCCCCeEEEEEeCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIN---DREMRDAIILIFANKQD 63 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~D 63 (113)
.-+..+|++|+....-...-......|+..+.. .....++|+.++++--.
T Consensus 64 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~ 116 (198)
T 3b6i_A 64 QELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT 116 (198)
T ss_dssp GGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESS
T ss_pred HHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCC
Confidence 356689999998755432212223334433321 01246789888877543
No 316
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=28.41 E-value=88 Score=19.86 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=27.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilY 139 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEA---TSIPMIIY 139 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 4789988886554445667777888888654 47898775
No 317
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=28.04 E-value=67 Score=16.43 Aligned_cols=25 Identities=16% Similarity=-0.023 Sum_probs=18.4
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHH
Q psy17510 21 GLIFVVDCADRDRIDEARQELHRII 45 (113)
Q Consensus 21 ~vi~v~d~~~~~~~~~~~~~~~~~~ 45 (113)
.++++||+++..........++...
T Consensus 5 ~~lV~YDI~~~kr~~kv~k~l~~yg 29 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKLANLLKSYG 29 (90)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHTTE
T ss_pred EEEEEEeCCChHHHHHHHHHHHHhC
Confidence 4889999998766776666666553
No 318
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=27.97 E-value=80 Score=18.57 Aligned_cols=46 Identities=9% Similarity=-0.094 Sum_probs=26.0
Q ss_pred hhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 14 HYYTGTQGLIFVVDCAD---RDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
..+..+...|+|+..+= +..+++....++.. + ..+..++.|.-+.|
T Consensus 58 ~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~-~---~~~~~ViPIfy~V~ 106 (176)
T 3jrn_A 58 SPIEVSRFAVVVVSENYAASSWCLDELVTIMDFE-K---KGSITVMPIFYGVE 106 (176)
T ss_dssp -CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHH-H---TTSCEEEEEECSSC
T ss_pred HHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhh-c---cCCCEEEEEEecCC
Confidence 45778889999997652 22233333333322 2 24567777777666
No 319
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=27.72 E-value=69 Score=16.46 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=11.0
Q ss_pred HHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 40 ELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 40 ~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
+++.+.+.....+.|++++-...
T Consensus 64 ~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 64 VLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHHhcccccCCCEEEEecCC
Confidence 34444433223456766655443
No 320
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=27.72 E-value=72 Score=16.71 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=13.5
Q ss_pred HHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 40 ELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 40 ~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
+++.+.+.+.....|++++....+
T Consensus 69 ~~~~l~~~~~~~~~pii~~s~~~~ 92 (142)
T 3cg4_A 69 TIRAILDNSLEQGIAIVMLTAKNA 92 (142)
T ss_dssp HHHHHHHTTCCTTEEEEEEECTTC
T ss_pred HHHHHHhhcccCCCCEEEEECCCC
Confidence 344444322235678887776655
No 321
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=27.46 E-value=75 Score=16.81 Aligned_cols=25 Identities=0% Similarity=0.170 Sum_probs=14.3
Q ss_pred HHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 39 QELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 39 ~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
.+++.+.+.+.....|++++....+
T Consensus 69 ~~~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 69 DLFNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp HHHHHHHTSTTTTTSCEEEEESSCC
T ss_pred HHHHHHHcCcccCCCCEEEEeCCCC
Confidence 4455554432345678887776554
No 322
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.10 E-value=72 Score=16.48 Aligned_cols=25 Identities=0% Similarity=0.054 Sum_probs=13.4
Q ss_pred HHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 39 QELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 39 ~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
.++..+.+.......|++++....+
T Consensus 64 ~~~~~l~~~~~~~~~pii~~s~~~~ 88 (133)
T 3nhm_A 64 ALCGHFRSEPTLKHIPVIFVSGYAP 88 (133)
T ss_dssp HHHHHHHHSTTTTTCCEEEEESCCC
T ss_pred HHHHHHHhCCccCCCCEEEEeCCCc
Confidence 3444454433235678777765543
No 323
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=26.94 E-value=1.3e+02 Score=19.52 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=29.2
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQD 63 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 63 (113)
.++.+++|..+. ..+..+....+..+... +.+ .-+|+|+..
T Consensus 234 ~~~~~vlV~~pe-~~si~ea~r~~~~L~~~----g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISE-FLSLYETERLIQELISY----DMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESS-HHHHHHHHHHHHHHHHT----TCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCC-cchHHHHHHHHHHHHHc----CCCCCEEEEecCC
Confidence 578899988865 55677777777777542 444 468899987
No 324
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=26.88 E-value=70 Score=20.77 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 128 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiilY 166 (332)
T 2r8w_A 128 AGADALLLAPVSYTPLTQEEAYHHFAAVAGA---TALPLAIY 166 (332)
T ss_dssp HTCSEEEECCCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988876554445667778888888653 46887763
No 325
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=26.57 E-value=72 Score=20.49 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=26.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+... .+.|+++-
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 143 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEA---LDAPSIIY 143 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHH---SSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 4789988886554445667778888888653 45786553
No 326
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=26.34 E-value=98 Score=19.59 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=30.6
Q ss_pred CCCCccCchh-hHH---hhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRP-LWR---HYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~-~~~---~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||+|...... ... ..+. ..+.+++|+|.+.. .....++...+.. -+ ..-++.||.|...
T Consensus 189 DT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~----l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 189 DTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS----VP-VNQYIFTKIDETT 253 (296)
T ss_dssp ECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS----SC-CCEEEEECTTTCS
T ss_pred eCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc----CC-CCEEEEeCCCccc
Confidence 7888765432 111 2222 36788899987632 3333333332211 12 2346679999653
No 327
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=32.06 E-value=14 Score=21.95 Aligned_cols=48 Identities=2% Similarity=0.043 Sum_probs=25.4
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--cCCCCCeEEEEEeC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND--REMRDAIILIFANK 61 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK 61 (113)
.-+..||++|++...=+..--.....++..+... ....++|+.++++-
T Consensus 69 ~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 3567899999987443321111123333333221 02467888887753
No 328
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=25.98 E-value=78 Score=20.00 Aligned_cols=39 Identities=8% Similarity=-0.122 Sum_probs=26.3
Q ss_pred cCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-.. .+-+....+++.+... .+.|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiilY 129 (288)
T 2nuw_A 90 MDILGVSSHSPYYFPRLPEKFLAKYYEEIARI---SSHSLYIY 129 (288)
T ss_dssp SCCSEEEECCCCSSCSCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 478888887654444 4667777888887653 46787663
No 329
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=25.78 E-value=1.2e+02 Score=19.12 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=23.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
.++.+++|+|.... .+.....+.+... - ...-++.||.|...
T Consensus 210 ~~~~~~lv~~~~~~---~~~~~~~~~~~~~---~-~i~givlnk~d~~~ 251 (295)
T 1ls1_A 210 GPDEVLLVLDAMTG---QEALSVARAFDEK---V-GVTGLVLTKLDGDA 251 (295)
T ss_dssp CCSEEEEEEEGGGT---HHHHHHHHHHHHH---T-CCCEEEEECGGGCS
T ss_pred CCCEEEEEEeCCCc---HHHHHHHHHHhhc---C-CCCEEEEECCCCCc
Confidence 57888999997632 2222222222211 1 13457899999643
No 330
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=25.71 E-value=1.2e+02 Score=19.43 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=26.8
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
+..+|++|+.-|..+....++....++.+... ...++++|.--.|
T Consensus 77 i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l---~~~~v~~V~GNHD 121 (296)
T 3rl5_A 77 MPYGDILLHTGDFTELGLPSEVKKFNDWLGNL---PYEYKIVIAGNHE 121 (296)
T ss_dssp CCSCSEEEECSCCSSSCCHHHHHHHHHHHHTS---CCSEEEECCCTTC
T ss_pred cCCCCEEEECCcccCCCCHHHHHHHHHHHHhC---CCCeEEEEcCCcc
Confidence 45789999999998765554444444444322 2345555544445
No 331
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=25.70 E-value=76 Score=20.16 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=27.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+... .+.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 132 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLYQHFKMVHDA---IDIPIIVY 132 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988876554445667778888888653 46887753
No 332
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=25.39 E-value=82 Score=16.54 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=17.3
Q ss_pred EEEEEEECCChhhHHHHHHHHHHH
Q psy17510 21 GLIFVVDCADRDRIDEARQELHRI 44 (113)
Q Consensus 21 ~vi~v~d~~~~~~~~~~~~~~~~~ 44 (113)
-++++||+++..........+...
T Consensus 4 ~~lV~YDI~~~kr~~kv~k~L~~y 27 (101)
T 2ivy_A 4 LYLIFYDITDDNLRNRVAEFLKKK 27 (101)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCChHHHHHHHHHHHHh
Confidence 578899998766666666666655
No 333
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=25.37 E-value=78 Score=16.31 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=17.5
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHH
Q psy17510 20 QGLIFVVDCADRDRIDEARQELHRI 44 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~~~ 44 (113)
--++++||+++..........++..
T Consensus 4 M~vlV~YDI~~~krr~kv~k~l~~y 28 (91)
T 3exc_X 4 MKLLVVYDVSDDSKRNKLANNLKKL 28 (91)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHT
T ss_pred eEEEEEEeCCCchHHHHHHHHHHHh
Confidence 3579999999766665555555555
No 334
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=25.36 E-value=58 Score=23.72 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=10.2
Q ss_pred hhcCCcEEEEEEE
Q psy17510 15 YYTGTQGLIFVVD 27 (113)
Q Consensus 15 ~~~~~~~vi~v~d 27 (113)
..+.+|++|+++.
T Consensus 424 ~A~~aDv~Iv~vg 436 (713)
T 3zyz_A 424 AARGKDVAIVFIT 436 (713)
T ss_dssp HHTTCSEEEEEEE
T ss_pred HhhcCCEEEEEec
Confidence 4567899999984
No 335
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=25.35 E-value=79 Score=19.92 Aligned_cols=39 Identities=3% Similarity=0.030 Sum_probs=27.0
Q ss_pred cCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-.. .+-+....+++.+... .+.|+++-
T Consensus 89 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiilY 128 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLSERQIAKYFRDLCSA---VSIPVFLY 128 (286)
T ss_dssp TTCSEEEECCSCSSTTCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 478998887655444 5667778888888653 46887763
No 336
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=25.26 E-value=76 Score=20.10 Aligned_cols=39 Identities=5% Similarity=0.255 Sum_probs=27.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 96 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiilY 134 (292)
T 3daq_A 96 LGADAIMLITPYYNKTNQRGLVKHFEAIADA---VKLPVVLY 134 (292)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---HCSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 3789998886554445667777888888653 36898764
No 337
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=25.22 E-value=60 Score=17.90 Aligned_cols=40 Identities=8% Similarity=0.162 Sum_probs=21.4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
.+..+|+--|++.+... .++..+-. ..++|++.+.+|.+|
T Consensus 40 ka~LViiA~D~~p~~~~----~~i~~lc~---~~~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 40 QALFVCVAEDCDQGNYV----KLVKALCA---KNEIKYVSVPKRASL 79 (126)
T ss_dssp CCSEEEEESSCCSTTHH----HHHHHHHH---HTTCCEEEESCSHHH
T ss_pred CceEEEEeCCCChHHHH----HHHHHHHH---HhCCCEEEECCHHHH
Confidence 45666666666543222 22222211 157999988766653
No 338
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=25.19 E-value=79 Score=20.33 Aligned_cols=39 Identities=8% Similarity=0.081 Sum_probs=27.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 118 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 156 (315)
T 3na8_A 118 LGAEAVMVLPISYWKLNEAEVFQHYRAVGEA---IGVPVMLY 156 (315)
T ss_dssp TTCSEEEECCCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 4789988876554445667778888888654 46887764
No 339
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=25.07 E-value=83 Score=16.52 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=7.8
Q ss_pred CCCeEEEEEeCCC
Q psy17510 51 RDAIILIFANKQD 63 (113)
Q Consensus 51 ~~~p~ilv~nK~D 63 (113)
...|++++....+
T Consensus 77 ~~~pii~~t~~~~ 89 (136)
T 3t6k_A 77 KTLPILMLTAQGD 89 (136)
T ss_dssp TTCCEEEEECTTC
T ss_pred CCccEEEEecCCC
Confidence 4567776665443
No 340
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=25.03 E-value=78 Score=16.35 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=12.7
Q ss_pred HHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 40 ELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 40 ~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
+++.+.+.......|++++....+
T Consensus 73 ~~~~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 73 VLAEIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp HHHHHHHSTTGGGSCEEEEESCCC
T ss_pred HHHHHHcCcccccccEEEEecCCc
Confidence 344444332224578877776554
No 341
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=24.98 E-value=83 Score=16.48 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=13.2
Q ss_pred HHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 39 QELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 39 ~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
.+++.+.+.......|++++....+
T Consensus 76 ~~~~~l~~~~~~~~~~ii~ls~~~~ 100 (143)
T 2qvg_A 76 EFLKELRDDSSFTDIEVFVLTAAYT 100 (143)
T ss_dssp HHHHHHTTSGGGTTCEEEEEESCCC
T ss_pred HHHHHHHcCccccCCcEEEEeCCCC
Confidence 4445554332225678777765544
No 342
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=24.83 E-value=1.3e+02 Score=19.47 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=30.5
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
.+.+.|++++.-- .++++++..++..+.. .++|+++.+......
T Consensus 76 ~~~~~dG~VItHG---TDTmeeTA~~Ls~~l~----~~kPVVlTGAmrP~~ 119 (326)
T 1nns_A 76 DCDKTDGFVITHG---TDTMEETAYFLDLTVK----CDKPVVMVGAMRPST 119 (326)
T ss_dssp HGGGCSEEEEECC---SSSHHHHHHHHHHHCC----CCSCEEEECCSSCTT
T ss_pred HhhcCCcEEEEcC---chhHHHHHHHHHHhcC----CCCCEEEeCCCCCCc
Confidence 3444588777552 3468888888877753 578999999877643
No 343
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=24.78 E-value=1.2e+02 Score=19.93 Aligned_cols=39 Identities=18% Similarity=0.426 Sum_probs=27.3
Q ss_pred cCCcEEEEEEECCCh-hhHHHHHHHHHHHHc-CcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADR-DRIDEARQELHRIIN-DREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~-~~~~~~~p~ilv 58 (113)
.++|+++++-..-.. .+-+....+++.+.. . .+.|+++-
T Consensus 117 ~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa---~~lPiilY 157 (344)
T 2hmc_A 117 VGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAA---PEIPAVIY 157 (344)
T ss_dssp HTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHS---TTSCEEEE
T ss_pred cCCCEEEECCCccCCCCCHHHHHHHHHHHHhhC---CCCcEEEE
Confidence 478998888655444 566777888888865 4 46887753
No 344
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=24.64 E-value=78 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=27.0
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+.+....+++.+.+. .+.|+++-
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilY 136 (293)
T 1f6k_A 98 LGYDCLSAVTPFYYKFSFPEIKHYYDTIIAE---TGSNMIVY 136 (293)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 4789988886554445667777888887653 35787753
No 345
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=24.59 E-value=60 Score=19.57 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=28.7
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
+.+|++.|-- -.+..+..+.++.+.+ .++|.++++.-.+
T Consensus 32 ~p~ILitdkK-Is~i~~ilP~LE~~~~----~~kpLlIIAedve 70 (194)
T 3m6c_A 32 DALILLHQDK-ISSLPDLLPLLEKVAG----TGKPLLIVAEDVE 70 (194)
T ss_dssp EEEEEEBSSE-ECCHHHHHHHHHHHHH----HTCCEEEEESEEC
T ss_pred cceEEEEcCc-cCCHHHHHHHHHHHHH----hCCCeEEEecccc
Confidence 6778877653 2467888888888866 4689999886665
No 346
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=24.53 E-value=89 Score=16.68 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=13.6
Q ss_pred HHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 39 QELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 39 ~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
.+++.+.+.+...+.|++++....+
T Consensus 76 ~~~~~lr~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 76 DILKLVKENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp HHHHHHHHSTTTTTSCEEEEESCCC
T ss_pred HHHHHHHhcccccCCCEEEEecCCC
Confidence 3444454433345678777765544
No 347
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.24 E-value=81 Score=16.12 Aligned_cols=24 Identities=0% Similarity=-0.072 Sum_probs=12.1
Q ss_pred HHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 40 ELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 40 ~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
+++.+.+.......|++++....+
T Consensus 65 ~~~~l~~~~~~~~~~ii~~s~~~~ 88 (127)
T 3i42_A 65 LVKQLRALPMEKTSKFVAVSGFAK 88 (127)
T ss_dssp HHHHHHHSCCSSCCEEEEEECC-C
T ss_pred HHHHHHhhhccCCCCEEEEECCcc
Confidence 344444332235677777666554
No 348
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=23.86 E-value=2e+02 Score=20.46 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=16.5
Q ss_pred HHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 38 RQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 38 ~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
.+.++.+.+ .+.|+++.+|+...
T Consensus 364 ~kHien~~~----fGvpvVVaiN~F~t 386 (557)
T 3pzx_A 364 EKHIENIGK----FGVPAVVAINAFPT 386 (557)
T ss_dssp HHHHHHHHT----TTCCEEEEEECCTT
T ss_pred HHHHHHHHH----cCCCeEEEEeCCCC
Confidence 344555533 68999999999864
No 349
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.54 E-value=89 Score=16.29 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=14.4
Q ss_pred HHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 39 QELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 39 ~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
.+++.+.+.+.....|++++....+
T Consensus 71 ~~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 71 SICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp HHHHHHHTSTTTTTSEEEEEESSCC
T ss_pred HHHHHHHhCccccCCcEEEEeCCCC
Confidence 4445554432346788888776554
No 350
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=23.36 E-value=65 Score=20.69 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=29.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
.++|+++++-..-...+.+....+++.+.+. .+.|+++--+..+
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilYn~g~~ 148 (316)
T 3e96_A 105 AGADAVMIHMPIHPYVTAGGVYAYFRDIIEA---LDFPSLVYFKDPE 148 (316)
T ss_dssp HTCSEEEECCCCCSCCCHHHHHHHHHHHHHH---HTSCEEEEECCTT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEEeCCCC
Confidence 3789988875554445677778888888654 3588776533333
No 351
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=23.28 E-value=85 Score=20.02 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=27.0
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCC-CeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD-AIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+ .|+++-
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~~lPiilY 144 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDS---ADGLPMVVY 144 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---HTTCCEEEE
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHh---CCCCCEEEE
Confidence 4789988886554445667778888887653 34 887763
No 352
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=23.02 E-value=1.3e+02 Score=18.08 Aligned_cols=51 Identities=6% Similarity=0.126 Sum_probs=31.9
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC------------cCC-CCCeEEEEEeCCC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND------------REM-RDAIILIFANKQD 63 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~------------~~~-~~~p~ilv~nK~D 63 (113)
..-+..||++|+.+..=...--.....|+..+... ... .+++++++.+--.
T Consensus 89 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg 152 (223)
T 3u7i_A 89 LQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGG 152 (223)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSS
T ss_pred HHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCC
Confidence 34567899999998765433333445677766432 123 5788888877543
No 353
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=22.87 E-value=1.3e+02 Score=17.78 Aligned_cols=30 Identities=3% Similarity=-0.085 Sum_probs=18.1
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHH
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRI 44 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~ 44 (113)
-+..||++|+.+..=...--.....|+..+
T Consensus 67 ~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 67 NFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 567899999998765422222334555543
No 354
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=22.84 E-value=1.9e+02 Score=19.81 Aligned_cols=41 Identities=10% Similarity=0.257 Sum_probs=30.8
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
+.|++++.-- .++++++..++..+.+. .++|+++.+.....
T Consensus 168 ~~DG~VItHG---TDTMeeTA~~Lsl~l~~---~~KPVVlTGAqrP~ 208 (438)
T 1zq1_A 168 GDYGVVVAHG---TDTMGYTAAALSFMLRN---LGKPVVLVGAQRSS 208 (438)
T ss_dssp TCSEEEEECC---SSSHHHHHHHHHHHEES---CCSCEEEECCSSCT
T ss_pred CCCeEEEecC---chhHHHHHHHHHHHHhC---CCCCEEEeCCCCCC
Confidence 7899877653 35688888888888643 57899999987764
No 355
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=22.69 E-value=98 Score=16.51 Aligned_cols=13 Identities=0% Similarity=0.350 Sum_probs=8.1
Q ss_pred CCCeEEEEEeCCC
Q psy17510 51 RDAIILIFANKQD 63 (113)
Q Consensus 51 ~~~p~ilv~nK~D 63 (113)
...|++++....+
T Consensus 90 ~~~piiils~~~~ 102 (149)
T 1i3c_A 90 KRIPVVVLTTSHN 102 (149)
T ss_dssp TTSCEEEEESCCC
T ss_pred CCCeEEEEECCCC
Confidence 4577777665544
No 356
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.56 E-value=94 Score=16.25 Aligned_cols=26 Identities=0% Similarity=0.208 Sum_probs=13.2
Q ss_pred HHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 38 RQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 38 ~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
..++..+.+.......|++++....+
T Consensus 62 ~~~~~~l~~~~~~~~~~ii~~s~~~~ 87 (140)
T 3n53_A 62 PNLCLKLKRSKGLKNVPLILLFSSEH 87 (140)
T ss_dssp -CHHHHHHTSTTCTTCCEEEEECC--
T ss_pred HHHHHHHHcCcccCCCCEEEEecCCC
Confidence 34455554443235678777766554
No 357
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=22.49 E-value=67 Score=23.98 Aligned_cols=42 Identities=5% Similarity=0.196 Sum_probs=24.8
Q ss_pred hhcCCcEEEEEEECCC--------hhh---HHHHHHHHHHHHcCcCCCCCeEEEEEe
Q psy17510 15 YYTGTQGLIFVVDCAD--------RDR---IDEARQELHRIINDREMRDAIILIFAN 60 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~--------~~~---~~~~~~~~~~~~~~~~~~~~p~ilv~n 60 (113)
..+.||++|+++-.+. +.+ -....++++.+.. .++|+|+|.+
T Consensus 570 ~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a----~~~~tVVVl~ 622 (845)
T 3abz_A 570 LAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLK----ANPNTVIVNQ 622 (845)
T ss_dssp HHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHH----HCSCEEEEEE
T ss_pred HHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHH----hCCCEEEEEe
Confidence 4578999999984431 111 1223556666654 3567776665
No 358
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=22.19 E-value=93 Score=16.05 Aligned_cols=23 Identities=9% Similarity=0.338 Sum_probs=10.5
Q ss_pred HHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 40 ELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 40 ~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
+++.+.+.......|++++....
T Consensus 69 ~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 69 LVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp HHHHHHTSTTCTTCCEEEEESCC
T ss_pred HHHHHHhcCCCCCCeEEEEeCCC
Confidence 33444332222456666655443
No 359
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=21.59 E-value=1.4e+02 Score=17.91 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=34.8
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
++|++.+.+......+.....+.++.+.+.....++|+++-|.=.. +++.+..+-
T Consensus 143 ~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~-------~~~a~~iGa 197 (215)
T 3ezx_A 143 KGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVS-------DKWIEEIGA 197 (215)
T ss_dssp TTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCC-------HHHHHHHTC
T ss_pred CCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-------HHHHHHhCC
Confidence 5788777667777777777777777776542223577776664332 456666654
No 360
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=21.55 E-value=1.7e+02 Score=18.76 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=27.1
Q ss_pred CC-cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 18 GT-QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 18 ~~-~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
++ |+++++-..-...+-+....+++.+... .+.|+++-
T Consensus 102 Ga~davlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 140 (311)
T 3h5d_A 102 GGFAAGLAIVPYYNKPSQEGMYQHFKAIADA---SDLPIIIY 140 (311)
T ss_dssp CCCSEEEEECCCSSCCCHHHHHHHHHHHHHS---CSSCEEEE
T ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 55 9988886554445667778888888664 47898774
No 361
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=21.53 E-value=1.2e+02 Score=17.15 Aligned_cols=45 Identities=4% Similarity=0.025 Sum_probs=25.5
Q ss_pred hhcCCcEEEEEEEC-CChhhHHHHHHHHHHHHcCcCCCCCeEEEEEe
Q psy17510 15 YYTGTQGLIFVVDC-ADRDRIDEARQELHRIINDREMRDAIILIFAN 60 (113)
Q Consensus 15 ~~~~~~~vi~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 60 (113)
-+...|.+++.+.+ .....-.....++..+.. ....++++.++++
T Consensus 42 ~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~-~~l~gk~vavfg~ 87 (175)
T 1ag9_A 42 DLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEE-IDFNGKLVALFGC 87 (175)
T ss_dssp HHHTCSEEEEECCEETTTEECHHHHHHHHHHTT-CCCTTCEEEEEEE
T ss_pred HhhhCCEEEEEEeecCCCcChHHHHHHHhhhhh-cccCCCEEEEEEE
Confidence 35578998888755 222112223444554432 2346789888887
No 362
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=21.01 E-value=63 Score=20.35 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=28.2
Q ss_pred CccCchhhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 4 GQDKIRPLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 4 G~~~~~~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
|+.++...+..|+- +.++ +.++|+.. +......-...+. . ...+..+++|++|.-
T Consensus 59 Gh~~wnpkM~~YIyg~R~nG-IhIIdL~k--T~~~L~~A~~~i~-~-~~~~~~iLfVgTk~~ 115 (253)
T 3bch_A 59 GGTNLDFQMEQYIYKRKSDG-IYIINLKR--TWEKLLLAARAIV-A-IENPADVSVISSRNT 115 (253)
T ss_dssp CCSCCCGGGGGGEEEECTTS-CEEECHHH--HHHHHHHHHHHHH-T-CSSGGGEEEEECSHH
T ss_pred cCCcCCccccccEEeecCCC-cEEEeHHH--HHHHHHHHHHHHH-H-HhCCCeEEEEeCCHH
Confidence 45556655555542 2245 56677643 3443333333332 1 124567888888863
No 363
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=20.69 E-value=1.1e+02 Score=19.75 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=23.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
..|-.++++|..... +.......+.+. .+ .-.++.||.|.
T Consensus 241 ~~de~llvLDa~t~~---~~~~~~~~~~~~---~~-it~iilTKlD~ 280 (328)
T 3e70_C 241 KPNLVIFVGDALAGN---AIVEQARQFNEA---VK-IDGIILTKLDA 280 (328)
T ss_dssp CCSEEEEEEEGGGTT---HHHHHHHHHHHH---SC-CCEEEEECGGG
T ss_pred cCCCCEEEEecHHHH---HHHHHHHHHHHh---cC-CCEEEEeCcCC
Confidence 468889999976542 333333333221 12 33788899995
No 364
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=20.65 E-value=1.3e+02 Score=17.30 Aligned_cols=43 Identities=7% Similarity=0.099 Sum_probs=26.9
Q ss_pred CCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 18 GTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
++|.+++.-|..+.. ..+....+++.+.+ .+.|++++.--.|.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSE----AHLPTAYVPGPQDA 75 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGG----GCSCEEEECCTTSC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEECCCCCc
Confidence 789999999998654 44444455555532 24677665544554
No 365
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=20.57 E-value=1.8e+02 Score=18.82 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=17.4
Q ss_pred hhHHhhhcCCcEEEEEEECCChhhHHHH
Q psy17510 10 PLWRHYYTGTQGLIFVVDCADRDRIDEA 37 (113)
Q Consensus 10 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~ 37 (113)
......+..||.+|+++.++ ..++...
T Consensus 167 ~~~~~aL~~aD~viip~~~~-~~s~~~~ 193 (361)
T 3pg5_A 167 PFNRTVLLGCDAFVTPTATD-LFSFHAF 193 (361)
T ss_dssp HHHHHHHTTCSEEEEEECCS-HHHHHHH
T ss_pred HHHHHHHHHCCEEEEEecCC-hHHHHHH
Confidence 33444567799999999875 3344333
No 366
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.40 E-value=53 Score=21.21 Aligned_cols=54 Identities=11% Similarity=0.236 Sum_probs=27.6
Q ss_pred CccCchhhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 4 GQDKIRPLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 4 G~~~~~~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
|+.+....+..|+- +.++ |.++|+.. +......-.+.+... ..+..+++|++|.
T Consensus 26 Gh~~wnpkM~~YIyg~R~nG-IhIIdL~k--T~~~L~~A~~~i~~i--~~~~~ILfVgTk~ 81 (295)
T 2zkq_b 26 GGTNLDFQMEQYIYKRKSDG-IYIINLKR--TWEKLLLAARAIVAI--ENPADVSVISSRN 81 (295)
T ss_dssp CCSCCCTGGGGGEEEECTTS-CEEECHHH--HHHHHHHHHHHHHHS--SCGGGEEEEECSH
T ss_pred cCCcCCccccceEEeecCCC-CEEEeHHH--HHHHHHHHHHHHHHH--hCCCeEEEEeCcH
Confidence 45555555555542 2255 66677643 333333322333211 2456788888875
No 367
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.14 E-value=76 Score=20.06 Aligned_cols=39 Identities=13% Similarity=0.334 Sum_probs=24.8
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
.++|+++++-..-...+-+....+++.+.+. .+.|+++-
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilY 133 (291)
T 3a5f_A 95 IGVDGLLVITPYYNKTTQKGLVKHFKAVSDA---VSTPIIIY 133 (291)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHC-CTGGG---CCSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 4789988886554444666666777766543 46887753
Done!