RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17510
(113 letters)
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 207 bits (529), Expect = 2e-70
Identities = 35/112 (31%), Positives = 64/112 (57%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ + R +W Y G ++++VD AD+++I+ ++ ELH +++ +++ +L+ N
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
K+DLP A+ E+ EK+ L+ I+DR D + L WL + K
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 200 bits (512), Expect = 8e-68
Identities = 51/112 (45%), Positives = 68/112 (60%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ KIRP WR Y+ T LI+V+D ADR R +E QEL ++ + ++ +LIFAN
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDL A EI E L L IRDR W +Q A T +G+ +G+ W+ N
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 205 bits (523), Expect = 9e-68
Identities = 72/112 (64%), Positives = 93/112 (83%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 274
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++ +
Sbjct: 275 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 200 bits (511), Expect = 1e-67
Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ +RP WR Y++ T +I+VVD DRDR+ A+ EL+ ++++ E+R +++LIFAN
Sbjct: 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFAN 131
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDA EI E+LG++ I +R W + S + T DGL EG+ WL +
Sbjct: 132 KQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 199 bits (508), Expect = 2e-67
Identities = 72/112 (64%), Positives = 93/112 (83%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++ +
Sbjct: 110 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 199 bits (508), Expect = 2e-67
Identities = 49/112 (43%), Positives = 69/112 (61%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG IRP WR YY+ T +I+VVD DRDRI ++ EL ++ + E+R AI+++FAN
Sbjct: 57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 116
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD+ AM E+ LGL ++DR W + + AT GL E + WL K
Sbjct: 117 KQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 199 bits (508), Expect = 3e-67
Identities = 50/110 (45%), Positives = 73/110 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 71 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 130
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S
Sbjct: 131 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 198 bits (506), Expect = 7e-67
Identities = 49/112 (43%), Positives = 69/112 (61%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ +R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFAN
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP A+ + IQE L L IR +W +Q A T + L G+ WL +
Sbjct: 128 KQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 198 bits (506), Expect = 8e-67
Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S K
Sbjct: 126 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 197 bits (504), Expect = 1e-66
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R LW+ Y+ G++F+VD AD +R DEAR EL + N E++D +I N
Sbjct: 73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 132
Query: 61 KQDLPDAMKPHEIQEKLGLTRIR-------DRNWYVQPSCATTADGLYEGLTWLTSN 110
K D P+A+ E++ LGL R V +G E WL+
Sbjct: 133 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 197 bits (504), Expect = 1e-66
Identities = 65/112 (58%), Positives = 85/112 (75%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R+ E+ EL +++ + E+RDA++L+FAN
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD+P+AM E+ +KLGL +R R WYVQ +CAT GLY+GL WL+
Sbjct: 139 KQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 207 bits (527), Expect = 2e-66
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 431
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 432 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 196 bits (500), Expect = 5e-66
Identities = 51/112 (45%), Positives = 73/112 (65%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ IRP WR YY T +IFVVD D+DR+ A +ELH ++ + E++DA +L+FAN
Sbjct: 68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD P A+ E+ ++L L ++DR+W + S A +G+ EGL WL K
Sbjct: 128 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 195 bits (498), Expect = 1e-65
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM--RDAIILIF 58
D+ GQ + R LW HYY Q +IFV+D +DR R+ A++EL ++N ++ R IL F
Sbjct: 73 DMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132
Query: 59 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
ANK DL DA+ ++ + L L I+D+ W++ S A +GL EG+ WL +
Sbjct: 133 ANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 192 bits (489), Expect = 4e-64
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R +W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI N
Sbjct: 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 134
Query: 61 KQDLPDAMKPHEIQEKLG------------LTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K D P+A+ ++E G L + R V G EG W+
Sbjct: 135 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194
Query: 109 SN 110
Sbjct: 195 QY 196
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 147 bits (373), Expect = 1e-46
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-----REMRDAII 55
V GQ + G G++FV D A +R+ + + + + + D I
Sbjct: 80 TVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPI 138
Query: 56 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
+I NK+DLPDA+ ++ + + + V + AT G++E L ++
Sbjct: 139 VIQVNKRDLPDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFETLKEVSRL 189
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 147 bits (373), Expect = 2e-46
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREM--RDAIIL 56
G + + P + G I+V + R + + + + + +++
Sbjct: 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 167
Query: 57 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
+ Q M + +L L + + W VQ + A T G G+ W+
Sbjct: 168 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEE 220
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 146 bits (370), Expect = 5e-46
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREM--RDAIIL 56
D+ G + +R L + + + ++FVVD A R + + + L++++ D +L
Sbjct: 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL 119
Query: 57 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
I NKQD+ A IQ++L R D L K
Sbjct: 120 IACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL--DSSSTAPAQLGKKGK 173
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 132 bits (332), Expect = 3e-39
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 5/114 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDR--EMRDAIIL 56
G + + P + G I+V + R + + + + +++
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 57 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
+ Q M + +L L + + W VQ + A T G G+ W+
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEE 305
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 126 bits (319), Expect = 3e-38
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Query: 1 DVGGQDKIRPLWRHYY----TGTQGLIFVVDCA-DRDRIDEARQELHRIINDREMRDAI- 54
D G K+R Y +GLIF+VD D ++ + L I++ E
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 55 --ILIFANKQDLPDAMKPHEIQEKLG--LTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
ILI NK +L A P +I++ L + ++ +R + L
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 123 bits (310), Expect = 4e-37
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 1 DVGGQDKIRPLWRHYY----TGTQGLIFVVDCA-DRDRIDEARQELHRIINDREMRDAI- 54
D G K+R Y +GLIF+VD D ++ + L I++ E
Sbjct: 97 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156
Query: 55 --ILIFANKQDLPDAMKPHEIQEKLG--LTRIRDR 85
ILI NK +L A P +I++ L + ++ +R
Sbjct: 157 IDILIACNKSELFTARPPSKIKDALESEIQKVIER 191
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 78.5 bits (193), Expect = 1e-19
Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 15/116 (12%)
Query: 1 DVGGQDKIRPLW---RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN--DREMRDAII 55
D GQ + GT LI+V+D D EA LH ++ + D
Sbjct: 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM--EALTRLHITVSKAYKVNPDMNF 132
Query: 56 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111
+F +K D E Q RD + A +LTS +
Sbjct: 133 EVFIHKVDGLSDDHKIETQ--------RDIHQRANDDLADAGLEKLHLSFYLTSIY 180
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 72.3 bits (177), Expect = 1e-16
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 1 DVGGQDK-----IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAI 54
D GGQD H + Q LI V D + + + + R+ DA
Sbjct: 58 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK 117
Query: 55 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDR---NWYVQPSCATT 96
I + +K DL K E+ + + + + + + T
Sbjct: 118 IFVLLHKMDLVQLDKREELFQIM-MKNLSETSSEFGFPNLIGFPT 161
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 52.4 bits (125), Expect = 2e-09
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 1 DVGGQDKIRPLW---RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN--DREMRDAII 55
++ GQ + L++V+D D A L II + I
Sbjct: 52 ELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINI 109
Query: 56 LIFANKQDLPDAMKPHEIQEKL 77
+ +K D + Q +
Sbjct: 110 EVLIHKVDGLSEDFKVDAQRDI 131
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 41.6 bits (97), Expect = 1e-05
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W + ++F+V ++ D R+ E+ I+N+R
Sbjct: 207 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266
Query: 51 RDAIILIFANKQDLPDAMKPH 71
+ I++F NK DL +
Sbjct: 267 SNVSIILFLNKTDLLEEKVQV 287
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 40.2 bits (94), Expect = 2e-05
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ L YY Q + V D +AR + ++++ +D II + N
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGN 116
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADG 99
K D ++ + G ++ + A T +
Sbjct: 117 KIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 40.3 bits (95), Expect = 2e-05
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ++ + L +Y G + V D +D R E + R+ + ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 123 LGNKIDLEN 131
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 40.3 bits (95), Expect = 3e-05
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ++ + L +Y G + V D + + I R E N +I
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123
Query: 58 FANKQDLPDAMK 69
NK D ++ K
Sbjct: 124 LGNKIDAEESKK 135
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 40.5 bits (94), Expect = 3e-05
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + G +IF ++ D R+ E ++ ++
Sbjct: 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248
Query: 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWY 88
++F NK D+ ++K+ + W+
Sbjct: 249 EKTSFMLFLNKFDI--------FEKKVLDVPLNVCEWF 278
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ++ R L +Y G+ + D + ++E + +E +I
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121
Query: 58 FANKQDLPD 66
NK D+ +
Sbjct: 122 LGNKIDISE 130
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 39.8 bits (92), Expect = 6e-05
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W + +IFVV + + R+ EA I N+R +
Sbjct: 223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282
Query: 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT 96
R +++F NKQDL + EK+ + + +++ + + TT
Sbjct: 283 RTISVILFLNKQDL--------LAEKVLAGKSKIEDYFPEFARYTT 320
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 39.2 bits (92), Expect = 6e-05
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D++ + +Q L I+ + L+ N
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGN 129
Query: 61 KQDLPD 66
K DL
Sbjct: 130 KCDLTT 135
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y +G + V + ++ +I ++ D +++ N
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
Query: 61 KQDLPD 66
K DLP
Sbjct: 118 KCDLPS 123
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y +G + V + + +I ++ D +++ N
Sbjct: 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134
Query: 61 KQDLPD 66
K DLP
Sbjct: 135 KCDLPT 140
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 39.3 bits (91), Expect = 6e-05
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + G +IF V +D D R+ E+ + I N++
Sbjct: 199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258
Query: 51 RDAIILIFANKQDLPDAMKPH 71
D I++F NK+DL +
Sbjct: 259 TDTSIILFLNKKDLFEEKIKK 279
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 39.2 bits (92), Expect = 7e-05
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q +N+ +A +L+ N
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGN 133
Query: 61 KQDLPD 66
K D+
Sbjct: 134 KSDMET 139
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 38.7 bits (91), Expect = 8e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAIILI 57
D GQ+ R + R YY G G + V D R+ + + + + + +I++
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIML 131
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 132 IGNKSDLES 140
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 38.5 bits (90), Expect = 9e-05
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G+++ H+ T + V D + +A + I R +IL+
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILV-GT 120
Query: 61 KQDLPDAMKPHEIQEKLG 78
D+ D + K+
Sbjct: 121 HLDVSDEKQRKACMSKIT 138
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 38.7 bits (91), Expect = 9e-05
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q +N+ +A +L+ N
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT-VNEHANDEAQLLLVGN 116
Query: 61 KQDLPD 66
K D+
Sbjct: 117 KSDMET 122
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 38.8 bits (91), Expect = 9e-05
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ+K L YY G G I D R + +E ++ + +A I++
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVV 122
Query: 58 FANKQDLPDA-MKPHEIQEKL 77
ANK D+ + ++ ++
Sbjct: 123 CANKIDIKNRQKISKKLVMEV 143
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 38.7 bits (91), Expect = 1e-04
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY GT G+I V D + ++ LH I ++ D ++ N
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGN 121
Query: 61 KQDLPD 66
K D P+
Sbjct: 122 KNDDPE 127
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 38.8 bits (91), Expect = 1e-04
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + V D A + + L + D + +I++ N
Sbjct: 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGN 118
Query: 61 KQDLPD 66
K DL
Sbjct: 119 KSDLRH 124
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 38.3 bits (90), Expect = 1e-04
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D+GGQ + Y G QG++ V D + + +++ + ++ + E ++ +
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQPLVAL 120
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 121 VGNKIDLEH 129
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 38.7 bits (90), Expect = 1e-04
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + YY G I V D ++ + +D A+ ++++ + + II++ AN
Sbjct: 99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL---KISSNYIIILVAN 155
Query: 61 KQDLPD 66
K D
Sbjct: 156 KIDKNK 161
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 38.4 bits (90), Expect = 1e-04
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D++ + +Q L I+ + L+ N
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGN 146
Query: 61 KQDLPD 66
K DL
Sbjct: 147 KCDLTT 152
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 38.4 bits (90), Expect = 1e-04
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G+ G+I V D D++ + + L I+ + L+ N
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTVLKLLVGN 121
Query: 61 KQDLPD 66
K DL D
Sbjct: 122 KCDLKD 127
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 38.4 bits (90), Expect = 1e-04
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L YY G QG+I V D RD + L+ + D + ++ N
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129
Query: 61 KQDLPD 66
K D +
Sbjct: 130 KIDKEN 135
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 38.5 bits (90), Expect = 1e-04
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D G ++ R L Y + + V D + + + ++ D II++
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIML 126
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 127 VGNKTDLAD 135
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 38.0 bits (89), Expect = 1e-04
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + + YY LI D + + L I I ++ N
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE-IEQYASNKVITVLVGN 139
Query: 61 KQDLPD 66
K DL +
Sbjct: 140 KIDLAE 145
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 37.9 bits (89), Expect = 2e-04
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G++ V D + D R + I + D +I N
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADVEKMILGN 121
Query: 61 KQDLPD 66
K D+ D
Sbjct: 122 KCDVND 127
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 38.0 bits (89), Expect = 2e-04
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G I + D + + + + + I +A +++ N
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQ-IKTYSWDNAQVILVGN 136
Query: 61 KQDLPD 66
K D+ +
Sbjct: 137 KCDMEE 142
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 37.5 bits (88), Expect = 2e-04
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY + G I V D D D + + +EL +++ + + + I
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCI 116
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 117 VGNKIDLEK 125
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 37.6 bits (88), Expect = 2e-04
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + + D A+++ + + I +A +++ N
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQ-IKTYSWDNAQVILVGN 135
Query: 61 KQDLPD 66
K DL D
Sbjct: 136 KCDLED 141
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 37.6 bits (88), Expect = 2e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R + YY G G + V D + L + D ++++ N
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE-LYDHAEATIVVMLVGN 138
Query: 61 KQDLPD 66
K DL
Sbjct: 139 KSDLSQ 144
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 4 GQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFAN 60
G + + R + I V R + + +++ I D E I++ N
Sbjct: 60 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE--SIPIMLVGN 117
Query: 61 KQDLPD 66
K D
Sbjct: 118 KCDESP 123
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 37.7 bits (88), Expect = 3e-04
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ+K L YY Q I + D R + ++L R+ + I++
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVL 124
Query: 58 FANKQDLPD 66
NK D+ D
Sbjct: 125 CGNKVDIKD 133
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 37.1 bits (87), Expect = 3e-04
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIAL 116
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 117 SGNKADLAN 125
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 37.2 bits (87), Expect = 3e-04
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D G + + R + I V + + + + + +I E D +++
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE--DIPVML 119
Query: 58 FANKQDLPD 66
NK D
Sbjct: 120 VGNKCDETQ 128
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 37.4 bits (87), Expect = 3e-04
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAIILI 57
D GQ++ R + YY G G + V D + + EL +D + + +
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGL 123
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 124 IGNKSDLAH 132
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 37.2 bits (87), Expect = 3e-04
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R L Y + + V D + + + ++ D II++
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIML 124
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 125 VGNKTDLSD 133
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 37.2 bits (87), Expect = 3e-04
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G+ + V D +D + +EL + + ++ I
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAI 133
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 134 AGNKCDLSD 142
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 37.2 bits (87), Expect = 3e-04
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + YY +G+I V D ++ D+ + + I+ DA +L+ N
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM-IDKYASEDAELLLVGN 139
Query: 61 KQDLPD 66
K D
Sbjct: 140 KLDCET 145
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 36.9 bits (86), Expect = 4e-04
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R + YY G G I + D + + + + + I +A +L+ N
Sbjct: 63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ-IKTYSWDNAQVLLVGN 121
Query: 61 KQDLPD 66
K D+ D
Sbjct: 122 KCDMED 127
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 36.8 bits (86), Expect = 4e-04
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R + R YY G G + V D R + + + N + +I++
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIIL 125
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 126 IGNKADLEA 134
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 36.8 bits (86), Expect = 4e-04
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY L+ + D ++ D + L I++ D +++ N
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE-IHEYAQHDVALMLLGN 124
Query: 61 KQDLPD 66
K D
Sbjct: 125 KVDSAH 130
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 36.8 bits (86), Expect = 5e-04
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R + YY G G + V D A + + L + D + +I++ N
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGN 142
Query: 61 KQDLPD 66
K DL
Sbjct: 143 KSDLRH 148
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 36.3 bits (85), Expect = 5e-04
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D G ++ R L YY G+ I V D + + +EL + ++ I
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAI 116
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 117 AGNKCDLTD 125
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 36.4 bits (85), Expect = 5e-04
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y G + V DR +E + +I+ ++ D +++ N
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122
Query: 61 KQDLPD 66
K DL
Sbjct: 123 KADLES 128
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 36.5 bits (85), Expect = 5e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + + YY G I D R + + + + L+ N
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED-VRKYAGSNIVQLLIGN 142
Query: 61 KQDLPD 66
K DL +
Sbjct: 143 KSDLSE 148
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 36.4 bits (85), Expect = 5e-04
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R + R YY G G + V D R+ + + + + + +I++
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIIL 120
Query: 58 FANKQDLPD 66
NK+DL
Sbjct: 121 CGNKKDLDA 129
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 36.9 bits (85), Expect = 5e-04
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GGQ+ + + + T + + ++D + + + + +++ N
Sbjct: 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGG-----KSPVIVVMN 158
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGL 100
K D + I++K R DG+
Sbjct: 159 KIDENP---SYNIEQKKINERFPAIENRFHRISCKNGDGV 195
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/63 (19%), Positives = 23/63 (36%)
Query: 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63
GQD+ + Y G I V + + ++++ I++ NK+D
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 64 LPD 66
L
Sbjct: 123 LHM 125
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 36.5 bits (85), Expect = 6e-04
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D G D + Y+ G I V D + + + L DRE +L+
Sbjct: 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138
Query: 58 FANKQDLPD 66
ANK DLP
Sbjct: 139 -ANKTDLPP 146
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 36.3 bits (85), Expect = 6e-04
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y +G + V + ++ Q +I ++ D +++ N
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 61 KQDLPD 66
K DL
Sbjct: 117 KSDLAA 122
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 36.3 bits (85), Expect = 6e-04
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117
Query: 61 KQDLPD 66
K DL D
Sbjct: 118 KSDLED 123
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 36.4 bits (85), Expect = 6e-04
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 127
Query: 61 KQDLPD 66
K DL D
Sbjct: 128 KSDLED 133
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 36.4 bits (85), Expect = 6e-04
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 1 DVGGQDKIRPLW--RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58
D +K+ W G + V ADR + A + ++ + I++
Sbjct: 58 DTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILV 117
Query: 59 ANKQDLPD 66
NK DL
Sbjct: 118 GNKADLAR 125
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 36.4 bits (85), Expect = 7e-04
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 131
Query: 61 KQDLPD 66
K DL D
Sbjct: 132 KSDLED 137
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 36.5 bits (85), Expect = 7e-04
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R + R YY G G + V D R+ + + + + + ++++
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVIL 135
Query: 58 FANKQDLPD 66
NK+DL
Sbjct: 136 CGNKKDLDP 144
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 36.0 bits (84), Expect = 9e-04
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59
D GQ++ R + +HYY ++FV D + + D ++
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Query: 60 NKQDLPD 66
NK DL
Sbjct: 135 NKCDLRS 141
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 35.9 bits (84), Expect = 9e-04
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63
QD R L H + V D+ ++A + ++ R+ D I++ NK D
Sbjct: 58 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 117
Query: 64 LPD 66
L
Sbjct: 118 LVR 120
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 36.0 bits (84), Expect = 0.001
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMAL 122
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 123 AGNKSDLLD 131
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 35.8 bits (83), Expect = 0.001
Identities = 15/66 (22%), Positives = 29/66 (43%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L ++ G + + D + R + ++ + + I++ N
Sbjct: 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149
Query: 61 KQDLPD 66
K DLPD
Sbjct: 150 KADLPD 155
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 35.7 bits (83), Expect = 0.001
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + + Y+ G++ + D R+ + I D I++ N
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDM-IEDAAHETVPIMLVGN 141
Query: 61 KQDLPDAMKPHE 72
K D+ D
Sbjct: 142 KADIRDTAATEG 153
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ + Y QG V + ++ + +I+ ++ D +++ N
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 61 KQDLPD 66
K DL D
Sbjct: 117 KCDLED 122
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/63 (19%), Positives = 25/63 (39%)
Query: 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63
GQ++ + Y G + V D+ + + I+ ++ +++ ANK D
Sbjct: 75 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134
Query: 64 LPD 66
L
Sbjct: 135 LMH 137
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 34.9 bits (81), Expect = 0.002
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R L ++ G + + D + R + ++ + I++ N
Sbjct: 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135
Query: 61 KQDLPD 66
K DL D
Sbjct: 136 KSDLED 141
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ + Y QG I V ++ + + +II + +++ N
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
Query: 61 KQDLPD 66
K DL
Sbjct: 117 KVDLES 122
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 1 DVGGQDKIRPLWR-HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59
D+ Q + H + V DR + + L R+ R D +++
Sbjct: 57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
Query: 60 NKQDLPD 66
NK DL
Sbjct: 117 NKSDLAR 123
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 35.0 bits (80), Expect = 0.002
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + ++F+V ++ D R++E++ II
Sbjct: 173 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232
Query: 51 RDAIILIFANKQDL 64
+++ +++F NK+DL
Sbjct: 233 QNSSVILFLNKKDL 246
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 34.5 bits (80), Expect = 0.003
Identities = 12/66 (18%), Positives = 20/66 (30%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQD+ L + G G + V ++ +++ N
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 61 KQDLPD 66
K DL
Sbjct: 138 KADLSP 143
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 34.4 bits (80), Expect = 0.003
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + + YY G Q + V DR+ + ++ E+ D + N
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQN 117
Query: 61 KQDLPD 66
K DL D
Sbjct: 118 KIDLLD 123
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 34.5 bits (80), Expect = 0.003
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 4 GQDKIRPLWR-HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
Q R H + V DR + + L R+ R D +++ NK
Sbjct: 81 EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140
Query: 63 DLPD 66
DL
Sbjct: 141 DLAR 144
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 33.8 bits (78), Expect = 0.004
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 1 DVGGQDK-IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59
+ G+++ + H + V DR ++A + ++ R+ D I++
Sbjct: 65 ENKGENEWLHD---HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121
Query: 60 NKQDLPD 66
NK DL
Sbjct: 122 NKSDLVR 128
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 33.5 bits (77), Expect = 0.008
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 1 DVGGQDK-IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59
+ G+++ + + V DR ++A + ++ R+ D I++
Sbjct: 96 ENKGENEWLHDH---CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 60 NKQDLPD 66
NK DL
Sbjct: 153 NKSDLVR 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.008
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 6 DKIRPLWRHYYTGTQGLIFVVD--CADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63
+ L + Y D + RI + EL R++ + + +L+ N Q+
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQN 255
Query: 64 LPDAMKPHEIQEKLGLTRIRDRN 86
A + K+ LT R +
Sbjct: 256 -AKAWNAFNLSCKILLT-TRFKQ 276
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 31.4 bits (72), Expect = 0.028
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 14 HYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI-FANKQDLPD 66
+ +IFV D + +L + + A+ L+ ++
Sbjct: 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 124
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 31.4 bits (72), Expect = 0.034
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 1 DVGGQDKIRPLWR-HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59
D GQ+ + R + +G + V D DR +E + + ++ ++ +++
Sbjct: 82 DTAGQE--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139
Query: 60 NKQDLPD 66
NK DL
Sbjct: 140 NKADLDH 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 31.8 bits (73), Expect = 0.035
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 22 LIFVVDCADRDRIDEAR---QELHR---IINDREMRDAIILIFANKQDLPDAMKPHEIQE 75
L++V+D A + + +E+ + R L+ NK DL + + +
Sbjct: 239 LLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPS-----LVALNKVDLLEEEAVKALAD 292
Query: 76 KLGLTRIRDRNWYVQPSCATTADGLYE 102
L V P A T GL
Sbjct: 293 ALA-----REGLAVLPVSALTGAGLPA 314
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 31.0 bits (71), Expect = 0.043
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GG +++ + ++FV D R+ + R + +++
Sbjct: 73 DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGT 127
Query: 61 KQDLPDA 67
+ + A
Sbjct: 128 QDAISAA 134
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein
STR initiative, northeast structural genomics
consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Length = 320
Score = 31.0 bits (71), Expect = 0.046
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 22 LIFVVDCADRDRIDEARQEL-HRIIN 46
L+ V D A+ RID+ R +I
Sbjct: 78 LVIVCDTANAPRIDDQRYLNGQSLIK 103
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 31.0 bits (70), Expect = 0.060
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 22 LIFVVDCAD--RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79
+I++ D ++ ++E + E +D L+ NK D+ D +++ +
Sbjct: 250 IIYIFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPFLVVINKIDVADEENIKRLEKFV-- 305
Query: 80 TRIRDRNWYVQPSCATTADGLYE 102
+++ A G+
Sbjct: 306 ---KEKGLNPIKISALKGTGIDL 325
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Length = 343
Score = 30.0 bits (68), Expect = 0.13
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 22 LIFVVDCADRDRIDEARQEL----HRIIN 46
+I +D RIDE + R I
Sbjct: 94 VICCLDFNALKRIDEMSDIVAASPGRKIM 122
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 29.3 bits (66), Expect = 0.22
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 22 LIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 77
++F++D +++ + Q + I + I+I NK D + + L
Sbjct: 112 ILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLL 167
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 29.0 bits (65), Expect = 0.27
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 1 DVGGQD---KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 57
D GQ+ ++RPL Y T + + R + + + + I++
Sbjct: 84 DTAGQEDYDRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIIL 139
Query: 58 FANKQDLPD 66
K DL D
Sbjct: 140 VGTKLDLRD 148
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 28.1 bits (63), Expect = 0.51
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 1 DVGGQ---DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 57
D GQ +++RPL Y G I + + ++ + I+L+
Sbjct: 62 DTAGQEDYNRLRPL---SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLV 118
Query: 58 FANKQDLPDAMKPHEIQEKLGLTRIR 83
K DL D + G I
Sbjct: 119 -GTKLDLRD--DKQFFIDHPGAVPIT 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 27.9 bits (63), Expect = 0.67
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 19 TQGLIFVVDCA---DRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMKP-H 71
T+ ++ V+D + RD D+ QEL + + + +I ANK D+P+A +
Sbjct: 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEY--NLRLTERPQIIVANKMDMPEAAENLE 294
Query: 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYE 102
+EKL ++ V P A T +GL E
Sbjct: 295 AFKEKLT------DDYPVFPISAVTREGLRE 319
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 27.4 bits (61), Expect = 0.98
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 50 MRDAIILIFANKQDLPDAMKP----HEIQEKLGL 79
+R I+ F NK D EI+ L +
Sbjct: 132 LRHTPIMTFINKMDRD-TRPSIELLDEIESILRI 164
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 27.0 bits (60), Expect = 1.1
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ L Y T + + R + + + + I++
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGT 117
Query: 61 KQDLPDAMKPHEIQEKLGLTRIR 83
K DL D E ++ LT I
Sbjct: 118 KLDLRDDKDTIEKLKEKKLTPIT 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 23 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI 82
+ +D QE++ + R +IL+ NK DL + ++ +T+I
Sbjct: 308 LLTID--AATGWTTGDQEIYEQVKHRP----LILVM-NKIDLVEKQLITSLEYPENITQI 360
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein,
NPPSFA, national project protein structural and
functional analyses; 1.60A {Geobacillus kaustophilus}
Length = 196
Score = 26.7 bits (59), Expect = 1.8
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 31 RDRIDEARQELHRIINDREMRDAIILIFANKQ 62
R ++D++R + +R A+ + +
Sbjct: 146 RGQLDDSRPNNGIPVTGESIRAALDALLEGRP 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 26.6 bits (59), Expect = 1.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 50 MRDAIILIFANKQDLPDAMKP----HEIQEKLGL 79
+RD IL F NK D P E++ +L +
Sbjct: 132 LRDTPILTFMNKLDRD-IRDPMELLDEVENELKI 164
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural
genomics, joint center for structural genomics, JCSG;
1.93A {Bacteroides thetaiotaomicron}
Length = 227
Score = 26.0 bits (57), Expect = 2.4
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 30 DRDRIDEARQELHRIIN--DREMRDAIILIFANKQDLPDAMKPHEIQEKLG 78
+ + + +LH I N D I +F ++D + +K EI +L
Sbjct: 156 NPKPLRDYCTQLHDIENQADDVYELFITKLFEEEKDCIELIKIKEIMHELE 206
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
hypothetical protein; 2.05A {Sinorhizobium meliloti}
Length = 218
Score = 25.8 bits (57), Expect = 2.8
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 31 RDRIDEARQELHRIINDREMRDAIILIFANKQ 62
+ D+AR + + ++R A+ + K
Sbjct: 159 HGQFDDARPGNGKDVTGADLRAAVDAVLKGKD 190
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 26.0 bits (58), Expect = 2.8
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 22 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 78
++FV+D +DE +++ I ++ +++ NK D+ + + EI+ KLG
Sbjct: 327 VLFVLD--ASSPLDEEDRKILERIKNKR----YLVVI-NKVDVVEKINEEEIKNKLG 376
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 25.8 bits (57), Expect = 3.5
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 1 DVGGQD---KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 57
D GQ+ ++RPL Y + ++ +R D + I + A ++
Sbjct: 77 DTAGQEEYDRLRPL---SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVL 132
Query: 58 FANKQDL-PDAMKP 70
K DL D
Sbjct: 133 VGLKVDLRKDGSDD 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 25.6 bits (56), Expect = 4.1
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G + Y+ + ++ D + + +D A ++ I +L+
Sbjct: 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPSTRVLLIGC 139
Query: 61 KQDLPD 66
K DL
Sbjct: 140 KTDLRT 145
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 25.4 bits (56), Expect = 4.4
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 1/83 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G + Y + ++ D + + +D ++ I + + +L+
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGC 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIR 83
K DL + T +
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVS 142
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 25.5 bits (57), Expect = 4.6
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 84 DRNWYVQPSCATTADGLYEGLTWLTSN 110
+ W + P GLY+ LT + +
Sbjct: 322 EMGWEIYP------QGLYDLLTRIHRD 342
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 25.4 bits (55), Expect = 4.8
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 34 IDEARQELHRIINDREMRDAII 55
++EAR+ H ++ E A+I
Sbjct: 273 VNEARKNNHHFKSESEEEKALI 294
>2gec_A Nucleocapsid protein; N protein, coronavirus, IBV N protein,
viral, viral protein; 1.30A {Infectious bronchitis
virus} SCOP: b.148.1.1 PDB: 2bxx_A 2c86_A 2btl_A
Length = 139
Score = 25.0 bits (54), Expect = 4.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 3 GGQDKIRPLWRHYYTGT 19
G + + W YYTGT
Sbjct: 61 GRRKPVPDAWYFYYTGT 77
>3hd4_A Nucleoprotein; beta platform beta hairpin, golgi apparatus,
nucleus, RNA-binding, transcription, transcriptio
regulation, virion; 1.75A {Murine hepatitis virus}
Length = 139
Score = 25.0 bits (54), Expect = 5.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 3 GGQDKIRPLWRHYYTGT 19
G Q ++ P W YY GT
Sbjct: 59 GQQKQLLPRWYFYYLGT 75
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 25.2 bits (56), Expect = 5.1
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 23 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI 82
+F+VD + + I + I ++ NK D+ + + E G I
Sbjct: 88 LFMVD-GTTTDAVDPAEIWPEFIARLPAKLPITVVR-NKADITG--ETLGMSEVNGHALI 143
Query: 83 R 83
R
Sbjct: 144 R 144
>1ssk_A Nucleocapsid protein; structural protein; NMR {Sars coronavirus}
SCOP: b.148.1.1
Length = 158
Score = 25.2 bits (54), Expect = 5.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 3 GGQDKIRPLWRHYYTGT 19
G ++ P W YY GT
Sbjct: 77 GKMKELSPRWYFYYLGT 93
>2ofz_A Nucleocapsid protein; SARS coronavirus nucleocapsid RNA binding
N-terminal domain, N protein, SARS-ORF9A, viral
protein; 1.17A {Sars coronavirus TOR2} PDB: 2og3_A
Length = 138
Score = 25.0 bits (54), Expect = 5.4
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 3 GGQDKIRPLWRHYYTGT 19
G ++ P W YY GT
Sbjct: 64 GKMKELSPRWYFYYLGT 80
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 25.1 bits (55), Expect = 5.5
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 1 DVGGQD---KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 57
D GQD ++RPL +Y L+ D + D + +N + I++
Sbjct: 88 DTAGQDDYDRLRPL---FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIV 143
Query: 58 FANKQDLPDAMKPHEIQEKLGLTRIR 83
K DL + GL +
Sbjct: 144 VGCKTDLRKDKSLVNKLRRNGLEPVT 169
>1xmt_A Putative acetyltransferase; structural genomics, protein
structure initiative, CESG, AT1G77540, center for
eukaryotic structural genomics; 1.15A {Arabidopsis
thaliana} SCOP: d.108.1.1 PDB: 2q44_A 2evn_A 2il4_A*
2q4y_A*
Length = 103
Score = 24.7 bits (54), Expect = 5.6
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 49 EMRDAIILIFANKQDLPDAMKPHEIQEKL---GLTRIRDRNWYVQPSC 93
+MR+ ++ +P + + L + + PSC
Sbjct: 29 KMRNNGKVMDLVHTYVPSFKRGLGLASHLCVAAFEHASSHSISIIPSC 76
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 25.0 bits (55), Expect = 7.1
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 62 QDLPDAMKPHEIQEK--LGLTRIRDRNW 87
Q LP+++ P ++ + L + R D
Sbjct: 480 QALPESLLPDSLKAENPLEIARAVDGKA 507
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 25.1 bits (54), Expect = 7.1
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 22 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67
LI ++ A + E E I + I + NK D+ +
Sbjct: 191 LIILLFDAHK---LEISDEFSEAIGALRGHEDKIRVVLNKADMVET 233
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus
faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Length = 188
Score = 24.5 bits (54), Expect = 7.8
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 23 IFVVDCADRDRIDEARQELHRIIN 46
I V D +E + N
Sbjct: 72 IIAVHVPSNDPENETPSLSTVMYN 95
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 23.6 bits (51), Expect = 8.3
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 58 FANKQDLPDAMKPHEIQEKLGLTRIRDRNW 87
+ PD H + +L L + +
Sbjct: 26 IHDVGLYPDQEAIHTLSAQLDLPKHTIIKF 55
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural
genomics/PR initiative, RSGI, structural genomics,
hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4
PDB: 1np2_A
Length = 431
Score = 24.7 bits (55), Expect = 8.6
Identities = 8/30 (26%), Positives = 9/30 (30%), Gaps = 6/30 (20%)
Query: 84 DRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
W V P +GLY L L
Sbjct: 309 AMGWEVYP------EGLYHLLKRLGREVPW 332
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.442
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,845,822
Number of extensions: 100558
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 167
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)