RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17510
(113 letters)
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 95.4 bits (236), Expect = 7e-27
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 71.1 bits (173), Expect = 3e-17
Identities = 50/108 (46%), Positives = 66/108 (61%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GGQ KIRP WR Y+ T LI+V+D ADR R +E QEL ++ + ++ +LIFANKQ
Sbjct: 68 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 127
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
DL A EI E L L IRDR W +Q A T +G+ +G+ W+ N
Sbjct: 128 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 68.1 bits (165), Expect = 2e-16
Identities = 72/110 (65%), Positives = 92/110 (83%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++
Sbjct: 110 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 66.6 bits (161), Expect = 1e-15
Identities = 51/113 (45%), Positives = 75/113 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 65 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 124
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S K+
Sbjct: 125 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 177
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 65.5 bits (158), Expect = 2e-15
Identities = 47/108 (43%), Positives = 67/108 (62%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GGQ +R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFANKQ
Sbjct: 54 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 113
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
DLP A+ + IQE L L IR +W +Q A T + L G+ WL +
Sbjct: 114 DLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 161
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 63.8 bits (154), Expect = 2e-14
Identities = 50/110 (45%), Positives = 72/110 (65%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ IRP WR YY T +IFVVD D+DR+ A +ELH ++ + E++DA +L+FAN
Sbjct: 67 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQD P A+ E+ ++L L ++DR+W + S A +G+ EGL WL
Sbjct: 127 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 176
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 58.6 bits (140), Expect = 2e-12
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GG + R +W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK
Sbjct: 65 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124
Query: 63 DLPDAMKPHEIQEKLGL------------TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
D P+A+ ++E GL + R V G EG W+
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 57.8 bits (138), Expect = 2e-12
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 2 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61
+GG + R LW+ Y+ G++F+VD AD +R DEAR EL + N E++D +I NK
Sbjct: 51 LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK 110
Query: 62 QDLPDAMKPHEIQEKLGLTRI-------RDRNWYVQPSCATTADGLYEGLTWLT 108
D P+A+ E++ LGL R V +G E WL+
Sbjct: 111 IDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 56.6 bits (135), Expect = 8e-12
Identities = 32/108 (29%), Positives = 60/108 (55%)
Query: 5 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64
Q + R +W Y G ++++VD AD+++I+ ++ ELH +++ +++ +L+ NK+DL
Sbjct: 57 QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 116
Query: 65 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
P A+ E+ EK+ L+ I+DR D + L WL + K
Sbjct: 117 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 54.5 bits (130), Expect = 5e-11
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L YY G QG+I V D RD + L+ + D + ++ N
Sbjct: 62 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K D + K R + + A T DG+ L
Sbjct: 122 KIDKENREVDRNEGLKF----ARKHSMLFIEASAKTCDGVQCAFEELV 165
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 53.2 bits (127), Expect = 1e-10
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q + +N+ +A +L+ N
Sbjct: 57 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW-FKTVNEHANDEAQLLLVGN 115
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K D+ + + G ++ S A D + E L
Sbjct: 116 KSDMETRVVTADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLA 159
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 52.8 bits (126), Expect = 2e-10
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 4/108 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G++ V D + D R + I +++
Sbjct: 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
E G D + A + L
Sbjct: 121 CDVNDKRQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLA 164
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 51.9 bits (123), Expect = 7e-10
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 12 WRHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDA--IILIFANKQDLPDAM 68
+ + + ++FVVD A R + + + L++++ D +LI NKQD+ A
Sbjct: 65 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124
Query: 69 KPHEIQEKL 77
IQ++L
Sbjct: 125 SAKLIQQQL 133
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 51.4 bits (122), Expect = 7e-10
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L ++ G + + D + R + ++ + + I++ N
Sbjct: 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 129
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K DLPD + +E Q + A T + + + L
Sbjct: 130 KADLPDQREVNERQ---ARELADKYGIPYFETSAATGQNVEKAVETLL 174
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 49.9 bits (118), Expect = 3e-09
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 33/141 (23%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR----------IDEARQELHRIINDREM 50
DVGGQ R W H + ++F+V ++ D+ ++E++ II
Sbjct: 51 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 110
Query: 51 RDAIILIFANKQDLPDAMKPHEIQEK-----------------------LGLTRIRDRNW 87
+++ +++F NK+DL + + + L D+
Sbjct: 111 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII 170
Query: 88 YVQPSCATTADGLYEGLTWLT 108
Y +CAT + + +
Sbjct: 171 YSHFTCATDTENIRFVFAAVK 191
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 48.0 bits (113), Expect = 1e-08
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + R YY G G + V D R+ + L IIL
Sbjct: 60 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K D + ++ + A T + + E
Sbjct: 120 KDLDADREVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCA 163
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 48.2 bits (114), Expect = 1e-08
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRD 52
GGQ R W + +IFVV + +R+ EA I N+R +R
Sbjct: 55 GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114
Query: 53 AIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWY 88
+++F NKQDL + EK+ + + +++
Sbjct: 115 ISVILFLNKQDL--------LAEKVLAGKSKIEDYF 142
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 46.0 bits (108), Expect = 7e-08
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 4/107 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G I + D + + + + +I ++L+
Sbjct: 60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
+ + E + + + A + + L
Sbjct: 120 CDMEDERVVSSERGRQ----LADHLGFEFFEASAKDNINVKQTFERL 162
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 46.0 bits (108), Expect = 9e-08
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G+ G+I V D D++ + + + I+ + L+ N
Sbjct: 61 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW-LQEIDRYATSTVLKLLVGN 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K DL D K + A + + + +
Sbjct: 120 KCDLKDKRVVEYDVAK---EFADANKMPFLETSALDSTNVEDAFLTMA 164
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 45.5 bits (106), Expect = 1e-07
Identities = 48/110 (43%), Positives = 67/110 (60%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GG IRP WR YY+ T +I+VVD DRDRI ++ EL ++ + E+R AI+++FANKQ
Sbjct: 57 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 116
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
D+ AM E+ LGL ++DR W + + AT GL E + WL K
Sbjct: 117 DMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 166
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 43.5 bits (101), Expect = 6e-07
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63
GQ++ L YY Q + V D +AR + + +D II + NK D
Sbjct: 61 GQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKID 119
Query: 64 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
+ ++ + G ++ + A T + + + +
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 38.3 bits (88), Expect = 5e-05
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 4/107 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + + YY LI D + + L I + +L+
Sbjct: 60 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
+ E+ ++ ++ Y + A +D + + L
Sbjct: 120 IDL----AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 36.5 bits (83), Expect = 2e-04
Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 33/141 (23%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + G +IF V +D D R+ E+ + I N++
Sbjct: 48 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 107
Query: 51 RDAIILIFANKQ-----------------------DLPDAMKPHEIQEKLGLTRIRDRNW 87
D I++F NK+ +A + Q + R +
Sbjct: 108 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI 167
Query: 88 YVQPSCATTADGLYEGLTWLT 108
Y +CAT + +T
Sbjct: 168 YTHFTCATDTKNVQFVFDAVT 188
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 35.4 bits (80), Expect = 4e-04
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GQ++ L YY G Q I V D + + A+ + + + +I + NK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKA 121
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
DL + + + + D + + A T+ + E +
Sbjct: 122 DLANKRAVDFQEAQ---SYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 34.9 bits (79), Expect = 8e-04
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 6/109 (5%)
Query: 3 GGQDKIRPLWRHYYTGTQGLI---FVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59
GQ++ R L +Y G+ + V D + ++E + +E +I
Sbjct: 63 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122
Query: 60 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
NK D+ + E + + ++ + A A +
Sbjct: 123 NKIDISERQVSTEEAQAW---CRDNGDYPYFETSAKDATNVAAAFEEAV 168
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 34.6 bits (78), Expect = 9e-04
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GQ++ R L Y + + V D + + + + + + +R D II++ NK
Sbjct: 57 AGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 115
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
DL D + + + + ++ N + A + + + +
Sbjct: 116 DLADKRQVSIEEGE---RKAKELNVMFIETSAKAGYNVKQLFRRVAA 159
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 30.0 bits (66), Expect = 0.044
Identities = 13/70 (18%), Positives = 25/70 (35%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
G + + + +HYY ++FV D + + D ++ NK
Sbjct: 60 GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKC 119
Query: 63 DLPDAMKPHE 72
DL A++
Sbjct: 120 DLRSAIQVPT 129
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 536
Score = 28.1 bits (63), Expect = 0.22
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 9 RPLWRH-YYTGTQGLIFVVDCAD-----RDRIDEARQE--LHR----IINDREMRDAIIL 56
+ +H Y T +G+ + +IDE R L R + + +E RD I
Sbjct: 460 ETVIQHIYNTHFEGVEQAKQLRKRWEQLKGKIDEKRYHDVLERLTIQVEHAKEWRDVINT 519
Query: 57 IFANKQDLPDA 67
F K + D
Sbjct: 520 YFYRKSGIDDQ 530
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.7 bits (60), Expect = 0.27
Identities = 12/106 (11%), Positives = 27/106 (25%), Gaps = 4/106 (3%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
G ++ R L YY G+ I V D + + + + + +
Sbjct: 61 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
+ + + A A + E ++
Sbjct: 121 LTDVREVMERDAKDY----ADSIHAIFVETSAKNAININELFIEIS 162
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein,
LtrC {Listeria monocytogenes [TaxId: 1639]}
Length = 159
Score = 26.2 bits (58), Expect = 0.75
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 34 IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72
+D RQ + ++ RE+++A+ + + D+
Sbjct: 40 LDICRQNVEHVLRKREVQNAV--LTGIQLDVMAEKGELV 76
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 26.6 bits (59), Expect = 0.78
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 9 RPLWRH-YYTGTQGLIFVVDCAD-----RDRIDEARQE--LHR----IINDREMRDAIIL 56
R LW+ + QG+ V +D AR R++ +L
Sbjct: 455 RNLWQELVHKYYQGVEQVRAMQRTWDQQEAYVDAARFAQVKALLQVQEREAVRWRNSCVL 514
Query: 57 IFANKQDLPD 66
F + P
Sbjct: 515 YFQSVAGRPI 524
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 25.7 bits (55), Expect = 1.2
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 5 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64
Q+ L Y T + + +++ I L+ + DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDL 119
Query: 65 PDAMKPHEIQEK 76
D E K
Sbjct: 120 RDDPSTIEKLAK 131
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 25.8 bits (56), Expect = 1.4
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 10/59 (16%)
Query: 12 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 70
++ G+ + +VD + +++ + I NK P
Sbjct: 333 YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACS----------IACNKNTCPGDKSA 381
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 25.5 bits (55), Expect = 1.9
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEI 73
T G + VVD + + ++ ++ NK D ++
Sbjct: 118 RVTDGALVVVDTIEG-----VCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDL 172
Query: 74 QEKLGLT 80
+ T
Sbjct: 173 YQTFART 179
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 377
Score = 25.4 bits (55), Expect = 2.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 22 LIFVVDCADRDRIDEARQELHRIIND 47
L F + + I++A+Q L +I D
Sbjct: 352 LRFNITPEIKSDIEKAKQNLSIMIQD 377
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 382
Score = 25.4 bits (55), Expect = 2.0
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 5 QDKIRPLWRHYYTGTQGLIFVVDCADRDRI---DEARQELHRIINDREMRDA 53
+ I P H FV+D R + +L +I+ D
Sbjct: 167 KSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDE 218
Score = 23.8 bits (51), Expect = 5.6
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 22 LIFVVDCADRDRIDEARQELHRIIND 47
L + + + + ++L RI+ +
Sbjct: 356 LRWKCSPETQGHLASSAEKLQRIVKN 381
>d1sska_ b.148.1.1 (A:) Nucleocapsid protein {SARS coronavirus,
(SARS-CoV) [TaxId: 227859]}
Length = 158
Score = 24.5 bits (53), Expect = 3.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 3 GGQDKIRPLWRHYYTGT 19
G ++ P W YY GT
Sbjct: 77 GKMKELSPRWYFYYLGT 93
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima
[TaxId: 2336]}
Length = 87
Score = 23.9 bits (52), Expect = 3.4
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 31 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 85
R+ +++ + L + RE + + + P ++ E+ + +TR R R
Sbjct: 9 REELEKVLKTL----SPRE-AMVLRMRYGLLDGKPKTLE--EVGQYFNVTRERIR 56
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein
1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 23.5 bits (51), Expect = 3.6
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 23 IFVVDCADRDRIDEARQELHRIINDREMR 51
C R + + + +I N+ ++
Sbjct: 41 RIWATCPSRFSEEILIEAIRKIENESHIK 69
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus
subtilis [TaxId: 1423]}
Length = 161
Score = 24.3 bits (53), Expect = 3.8
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 34 IDEARQELHRIINDREMRDAII 55
+ + + +++N RE+ A++
Sbjct: 41 LSVCMENVEKVLNKREIIHAVL 62
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 24.1 bits (51), Expect = 5.9
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 34 IDEARQELHRIINDREMRDAII 55
++EAR+ H ++ E A+I
Sbjct: 246 VNEARKNNHHFKSESEEEKALI 267
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 23.8 bits (50), Expect = 6.6
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 5 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64
Q+ L Y T + + R + + + + I++ K DL
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDL 121
Query: 65 PDAMKPHE 72
D E
Sbjct: 122 RDDKDTIE 129
>d2geca1 b.148.1.1 (A:23-160) Nucleocapsid protein {Avian
infectious bronchitis virus [TaxId: 11120]}
Length = 138
Score = 22.9 bits (49), Expect = 9.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 3 GGQDKIRPLWRHYYTGT 19
G + + W YYTGT
Sbjct: 60 GRRKPVPDAWYFYYTGT 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.442
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,435
Number of extensions: 19203
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 59
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)