Query psy17511
Match_columns 466
No_of_seqs 246 out of 296
Neff 5.2
Searched_HMMs 46136
Date Sat Aug 17 00:27:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4470|consensus 100.0 1.4E-73 3.1E-78 539.3 21.2 220 244-465 10-231 (246)
2 KOG4470|consensus 100.0 7E-70 1.5E-74 514.2 22.1 226 36-263 3-230 (246)
3 PF02252 PA28_beta: Proteasome 100.0 5.3E-54 1.2E-58 392.7 17.5 134 331-464 1-134 (150)
4 PF02252 PA28_beta: Proteasome 100.0 1.3E-47 2.8E-52 350.6 17.9 135 130-264 1-135 (150)
5 PF02251 PA28_alpha: Proteasom 99.8 6.2E-20 1.3E-24 146.0 4.6 64 36-99 1-64 (64)
6 PF02251 PA28_alpha: Proteasom 99.7 5.2E-17 1.1E-21 129.3 5.3 58 243-300 7-64 (64)
7 PF08429 PLU-1: PLU-1-like pro 80.9 58 0.0013 33.3 15.0 48 137-184 85-153 (335)
8 COG3105 Uncharacterized protei 77.0 8.8 0.00019 35.2 6.7 62 362-431 17-78 (138)
9 cd07635 BAR_GRAF2 The Bin/Amph 74.6 88 0.0019 30.8 13.4 115 335-450 12-185 (207)
10 COG3105 Uncharacterized protei 66.5 21 0.00045 32.9 6.5 75 180-278 33-107 (138)
11 KOG0795|consensus 64.0 1.1E+02 0.0023 30.7 11.4 101 125-267 105-209 (262)
12 KOG2391|consensus 52.4 2.6E+02 0.0056 29.8 12.5 109 136-250 247-359 (365)
13 KOG2391|consensus 50.9 2E+02 0.0044 30.6 11.4 108 338-452 248-359 (365)
14 PRK11677 hypothetical protein; 45.5 1.1E+02 0.0023 28.3 7.7 50 381-435 28-77 (134)
15 PF06295 DUF1043: Protein of u 44.0 1E+02 0.0023 27.7 7.3 46 383-433 26-71 (128)
16 KOG1647|consensus 41.7 2.2E+02 0.0047 28.7 9.5 93 131-258 122-218 (255)
17 PRK11677 hypothetical protein; 33.5 2.2E+02 0.0047 26.3 7.7 49 180-233 28-76 (134)
18 PLN02344 chorismate mutase 32.8 1.7E+02 0.0037 30.2 7.5 75 333-443 134-214 (284)
19 PF06295 DUF1043: Protein of u 32.4 1.9E+02 0.0042 26.0 7.2 44 182-230 26-69 (128)
20 KOG0795|consensus 28.8 2.3E+02 0.005 28.4 7.4 76 333-443 112-192 (262)
21 PF10428 SOG2: RAM signalling 28.7 5.2E+02 0.011 28.2 10.9 94 341-457 58-151 (445)
22 PLN02344 chorismate mutase 27.6 2.1E+02 0.0046 29.5 7.2 63 162-240 144-212 (284)
23 PF05600 DUF773: Protein of un 26.5 3.8E+02 0.0082 29.8 9.5 112 135-254 25-163 (507)
24 PF13870 DUF4201: Domain of un 26.3 3.3E+02 0.0071 25.4 7.9 53 186-238 96-158 (177)
25 COG3190 FliO Flagellar biogene 25.0 57 0.0012 30.2 2.4 40 12-52 81-125 (137)
26 KOG1937|consensus 24.5 1E+03 0.022 26.6 16.6 88 187-275 344-437 (521)
27 PF12325 TMF_TATA_bd: TATA ele 22.5 5.8E+02 0.012 23.0 10.4 46 376-421 10-55 (120)
28 TIGR02753 sodN superoxide dism 21.5 5.2E+02 0.011 24.3 8.0 74 330-431 24-102 (145)
29 PF00611 FCH: Fes/CIP4, and EF 20.6 1E+02 0.0022 24.8 2.9 39 377-416 1-39 (91)
30 COG3697 CitX Phosphoribosyl-de 20.6 1.8E+02 0.004 28.0 4.9 53 131-185 47-99 (182)
31 PTZ00008 (NAP-S) nucleosome as 20.5 2E+02 0.0044 27.7 5.3 52 382-440 2-61 (185)
No 1
>KOG4470|consensus
Probab=100.00 E-value=1.4e-73 Score=539.31 Aligned_cols=220 Identities=45% Similarity=0.778 Sum_probs=209.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCCcccchhhccccCCCCCCCccCCCCC--CCCcccccccccCCC
Q psy17511 244 LVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHS--DGPVTKKAKRELDND 321 (466)
Q Consensus 244 lVv~Fre~l~~eAE~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~~ipip~p~~~~~~~--d~~~~Kk~k~~~~~~ 321 (466)
.|+.||++++.+||.++.++||+||+|||+||+++.+|.++++++|+++|||+|||....+.. +++..|+++-+ ..
T Consensus 10 kv~vfk~~l~~~ae~l~~~~fPkkvield~~Lkep~ln~~~l~~~~adl~ipvpdp~~~~~~~d~~~~~~~~~~~d--~~ 87 (246)
T KOG4470|consen 10 KVVVFKEILFAKAERLLGKGFPKKVIELDALLKEPILNEANLTEKHADLNIPVPDPELLKNELDSDDQAVKKQRVD--EK 87 (246)
T ss_pred hHHHHHHHHHHHHHHHHHccCChhHHHHHHHhcCcccchhhHhhhccccCCCCCCchhhcccCccccchhhhhhhh--hh
Confidence 589999999999999999999999999999999999999999999999999999999887763 44666665533 35
Q ss_pred CCCCcccccCCCccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy17511 322 VSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAF 401 (466)
Q Consensus 322 ~~~~~~~~~p~g~v~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~ 401 (466)
.+|.++.++|||.|+||++++.|++.|||+++.|+|+||+|+|||||+||||||||||||+|||+||++++++++++++|
T Consensus 88 ~~g~~~~~~p~g~v~cNekl~~l~~lvkP~i~~lvEk~nlv~tWIq~lIPkIEDGNnFGVaIQEkvle~v~aV~tk~eaF 167 (246)
T KOG4470|consen 88 KKGAPVFGLPSGTVPCNEKLAYLIQLVKPEIRKLVEKCNLVKTWIQLLIPKIEDGNNFGVAIQEKVLERVNAVKTKVEAF 167 (246)
T ss_pred ccCCcccCCCCCCccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccCCccceeehHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhcC
Q psy17511 402 YDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMT 465 (466)
Q Consensus 402 ~~~i~kY~~~Ra~~vsK~~KyP~V~Dy~~av~e~Dek~~~~lr~~l~eiRn~Ya~l~DiI~k~~ 465 (466)
+||||+||++||++|+|++|||||+|||++|+|+||++|.++|.+++|+||+|++|||||.||+
T Consensus 168 ~tqISrYf~~RgklV~K~aK~pHV~DYR~~v~e~DE~ey~~lrl~v~e~Rn~ya~L~dii~kN~ 231 (246)
T KOG4470|consen 168 QTQISRYFSERGKLVTKAAKYPHVDDYRRLVHELDEKEYISLRLMVLELRNFYATLHDIILKNL 231 (246)
T ss_pred HHHHHHHHHHHhHHHHHHhcCccHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 2
>KOG4470|consensus
Probab=100.00 E-value=7e-70 Score=514.22 Aligned_cols=226 Identities=44% Similarity=0.753 Sum_probs=210.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcccCCCCccchhhccccCCCCCCCccCCCCC--CCCccccc
Q psy17511 36 MANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLNSHS--DGPVTKKA 113 (466)
Q Consensus 36 m~~~~~~kv~~fk~~l~~~Ae~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~nip~p~p~~~~~~~--d~~~~Kk~ 113 (466)
|+.++.++|+.||++++.+||.++.++||+||+|||+||++|.||.++++++|+++|||+|||....+.. +.+..||+
T Consensus 3 ~~~e~~~kv~vfk~~l~~~ae~l~~~~fPkkvield~~Lkep~ln~~~l~~~~adl~ipvpdp~~~~~~~d~~~~~~~~~ 82 (246)
T KOG4470|consen 3 LPIEAPKKVVVFKEILFAKAERLLGKGFPKKVIELDALLKEPILNEANLTEKHADLNIPVPDPELLKNELDSDDQAVKKQ 82 (246)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHccCChhHHHHHHHhcCcccchhhHhhhccccCCCCCCchhhcccCccccchhhhh
Confidence 5678899999999999999999999999999999999999999999999999999999999998877764 34445555
Q ss_pred cccccCCCCCCcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHH
Q psy17511 114 KRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSV 193 (466)
Q Consensus 114 k~~~~~~~~g~~v~~~~~g~v~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~v 193 (466)
+ .+...+|.|++++|||+|+||++|+.|++.|||+++.|+|+||+|+|||||+||||||||||||+|||+|++++++|
T Consensus 83 ~--~d~~~~g~~~~~~p~g~v~cNekl~~l~~lvkP~i~~lvEk~nlv~tWIq~lIPkIEDGNnFGVaIQEkvle~v~aV 160 (246)
T KOG4470|consen 83 R--VDEKKKGAPVFGLPSGTVPCNEKLAYLIQLVKPEIRKLVEKCNLVKTWIQLLIPKIEDGNNFGVAIQEKVLERVNAV 160 (246)
T ss_pred h--hhhhccCCcccCCCCCCccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccCCccceeehHHHHHHHHHH
Confidence 5 33456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy17511 194 ESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKG 263 (466)
Q Consensus 194 e~~a~~~~d~i~kY~~~Rak~vsK~~KyPhVeDYr~av~E~Dek~y~~l~lVv~Fre~l~~eAE~ll~~~ 263 (466)
+++|++|+||||+||++||++|+|++|||||+|||++|+|+||++|+++|+|+...++.+..--+++.+.
T Consensus 161 ~tk~eaF~tqISrYf~~RgklV~K~aK~pHV~DYR~~v~e~DE~ey~~lrl~v~e~Rn~ya~L~dii~kN 230 (246)
T KOG4470|consen 161 KTKVEAFQTQISRYFSERGKLVTKAAKYPHVDDYRRLVHELDEKEYISLRLMVLELRNFYATLHDIILKN 230 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCccHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999988766666443
No 3
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=100.00 E-value=5.3e-54 Score=392.68 Aligned_cols=134 Identities=57% Similarity=0.947 Sum_probs=118.7
Q ss_pred CCCccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511 331 TNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFV 410 (466)
Q Consensus 331 p~g~v~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~~~~i~kY~~ 410 (466)
|||+|++|++|++|++.|||||++|+|.|++|+|||+|+||||||||||||+|||+++++|++++++|++|+|++++||+
T Consensus 1 ~~g~v~~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~a~~~~~~i~~Y~~ 80 (150)
T PF02252_consen 1 PCGFVPSNEKIVELLQKVKPEIRELIEKCNTVKMWIQLLIPKIEDGNNFGVSVQEEVLEELRAVESKAENFLDQISKYFS 80 (150)
T ss_dssp ----B---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Q psy17511 411 SRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFM 464 (466)
Q Consensus 411 ~Ra~~vsK~~KyP~V~Dy~~av~e~Dek~~~~lr~~l~eiRn~Ya~l~DiI~k~ 464 (466)
+||++++|++|||||+||+++|+|+|+++|++||++++||||+|++|||+|+||
T Consensus 81 ~Ra~~v~k~~K~p~v~DY~~~v~e~Dek~~~~lr~~~~elRn~Y~~l~D~i~KN 134 (150)
T PF02252_consen 81 ARAKAVSKAAKYPHVEDYRQAVHELDEKEYISLRLIVLELRNNYATLYDIISKN 134 (150)
T ss_dssp HHHHHHHHHHH-TTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998
No 4
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=100.00 E-value=1.3e-47 Score=350.62 Aligned_cols=135 Identities=55% Similarity=0.893 Sum_probs=117.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511 130 TNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFV 209 (466)
Q Consensus 130 ~~g~v~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~d~i~kY~~ 209 (466)
|||+|++|++|++|++.|||||++|+|+|++|+|||||+||||||||||||+|||+++++|++++++|++|+|+|++||+
T Consensus 1 ~~g~v~~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~a~~~~~~i~~Y~~ 80 (150)
T PF02252_consen 1 PCGFVPSNEKIVELLQKVKPEIRELIEKCNTVKMWIQLLIPKIEDGNNFGVSVQEEVLEELRAVESKAENFLDQISKYFS 80 (150)
T ss_dssp ----B---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q psy17511 210 SRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGF 264 (466)
Q Consensus 210 ~Rak~vsK~~KyPhVeDYr~av~E~Dek~y~~l~lVv~Fre~l~~eAE~ll~~~f 264 (466)
+||++|+|++|||||+|||++|+|+|+++|++||++..--++.+..--++|.+.|
T Consensus 81 ~Ra~~v~k~~K~p~v~DY~~~v~e~Dek~~~~lr~~~~elRn~Y~~l~D~i~KN~ 135 (150)
T PF02252_consen 81 ARAKAVSKAAKYPHVEDYRQAVHELDEKEYISLRLIVLELRNNYATLYDIISKNF 135 (150)
T ss_dssp HHHHHHHHHHH-TTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999998888887765
No 5
>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.
Probab=99.79 E-value=6.2e-20 Score=145.99 Aligned_cols=64 Identities=36% Similarity=0.687 Sum_probs=46.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcccCCCCccchhhccccCCCCCCCc
Q psy17511 36 MANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPI 99 (466)
Q Consensus 36 m~~~~~~kv~~fk~~l~~~Ae~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~nip~p~p~ 99 (466)
|+++++.||++||++|+++||++|+++||+||.|||+||++++||++||+++|+++|||+|||+
T Consensus 1 v~~e~~~kV~~fr~~l~~eAE~Lv~~~fP~KI~eLd~lLk~~~fn~~dls~i~~~lnIPiPdP~ 64 (64)
T PF02251_consen 1 VSPENKKKVDEFRQSLTKEAENLVSNFFPQKIVELDELLKSPSFNLSDLSSIHAPLNIPIPDPP 64 (64)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSGGG--S-GGGS------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhcCcccccccHHhhcCcCCCCCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999984
No 6
>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.
Probab=99.67 E-value=5.2e-17 Score=129.30 Aligned_cols=58 Identities=40% Similarity=0.718 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCCcccchhhccccCCCCCCCc
Q psy17511 243 WLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPI 300 (466)
Q Consensus 243 ~lVv~Fre~l~~eAE~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~~ipip~p~ 300 (466)
..|..||++|+++||++|.++||+||.|||+||++++||+++|+++|+++|||+|||+
T Consensus 7 ~kV~~fr~~l~~eAE~Lv~~~fP~KI~eLd~lLk~~~fn~~dls~i~~~lnIPiPdP~ 64 (64)
T PF02251_consen 7 KKVDEFRQSLTKEAENLVSNFFPQKIVELDELLKSPSFNLSDLSSIHAPLNIPIPDPP 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSGGG--S-GGGS------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhcCcccccccHHhhcCcCCCCCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999984
No 7
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=80.88 E-value=58 Score=33.31 Aligned_cols=48 Identities=29% Similarity=0.571 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---hc-----cc-------ccCCCCcchhHHH
Q psy17511 137 NEKLKLMISVVK------PHIKQLVEHSNVLKMWITF---MI-----PK-------IEDGNNFGVSIQE 184 (466)
Q Consensus 137 N~~I~~l~~~vK------pei~~LiE~~n~VkmWIqL---~I-----Pk-------IEDGNNFGVsIQe 184 (466)
=+.|..+++.+. ||+..|.+.+..|.-|-.- .+ +- ++.|..|||.+-|
T Consensus 85 l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpe 153 (335)
T PF08429_consen 85 LEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPE 153 (335)
T ss_pred HHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChh
Confidence 356777777765 8888888888888888642 22 22 7889999999865
No 8
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.99 E-value=8.8 Score=35.17 Aligned_cols=62 Identities=16% Similarity=0.409 Sum_probs=48.2
Q ss_pred HHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy17511 362 LKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQA 431 (466)
Q Consensus 362 vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~~~~i~kY~~~Ra~~vsK~~KyP~V~Dy~~a 431 (466)
|-.-|-+.|-|.-.| -|-=|..+-.||..+++..+++..++.++|.+-|.++.++++ ||+..
T Consensus 17 vGi~IG~li~Rlt~~---~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~-----dYqkl 78 (138)
T COG3105 17 VGIIIGALIARLTNR---KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQ-----DYQKL 78 (138)
T ss_pred HHHHHHHHHHHHcch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 333444444444322 356688999999999999999999999999999999999987 77654
No 9
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=74.57 E-value=88 Score=30.81 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=71.6
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-------cC--ccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH-
Q psy17511 335 VPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFM-------IP--KIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQ- 404 (466)
Q Consensus 335 v~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~-------IP--kIEDGNNFGVsVQeevl~el~~v~~~a~~~~~~- 404 (466)
=++|+.|..|+...+.-+..+.+-+...+.+++-. |. .+.|.++.|-++| +..+-++.+.+...-+.++
T Consensus 12 e~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~-ef~~~~~el~d~r~~L~~~~ 90 (207)
T cd07635 12 ERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQ-EFSNFLKNLEEQREIMALNV 90 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999998866666532 22 2222222245555 3444444555555433333
Q ss_pred -----------------------------HHHHHHHHHHHH--HHHhcCCChH------------------HHHHHHHHh
Q psy17511 405 -----------------------------MSRYFVSRAKVI--SKVAKYPHIA------------------DYRQAVKEL 435 (466)
Q Consensus 405 -----------------------------i~kY~~~Ra~~v--sK~~KyP~V~------------------Dy~~av~e~ 435 (466)
..+|+.++.+.+ ++-.|-|+++ ||...|.++
T Consensus 91 ~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~~sLdYv~qin~l 170 (207)
T cd07635 91 TETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYELSLEYVCKLQEI 170 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 236888888844 3333455444 788888888
Q ss_pred hHHHHHHHHHHHHHH
Q psy17511 436 DEKEYLSLWLVLCEI 450 (466)
Q Consensus 436 Dek~~~~lr~~l~ei 450 (466)
.++-=+.+-..|+..
T Consensus 171 Q~rKKfe~le~ll~~ 185 (207)
T cd07635 171 QERKKFECVEPMLSF 185 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777666655443
No 10
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.51 E-value=21 Score=32.86 Aligned_cols=75 Identities=19% Similarity=0.376 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q psy17511 180 VSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEEL 259 (466)
Q Consensus 180 VsIQeevl~el~~ve~~a~~~~d~i~kY~~~Rak~vsK~~KyPhVeDYr~av~E~Dek~y~~l~lVv~Fre~l~~eAE~l 259 (466)
|-=|..+..||.++++...++..++.++|.+-|.++.++++ ||+..- +.+.+.|.+|
T Consensus 33 ~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~-----dYqkly------------------qHmA~ss~~L 89 (138)
T COG3105 33 LKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQ-----DYQKLY------------------QHMAKSSTSL 89 (138)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH------------------HHHHhhHhhh
Confidence 66688999999999999999999999999999999999985 887642 2233333443
Q ss_pred HHhhhhhhHHHHHHhhhcc
Q psy17511 260 ILKGFPEKIVILNDLLATE 278 (466)
Q Consensus 260 l~~~fP~KI~eL~~lL~~~ 278 (466)
+ -..|.|=.-+..|+.+.
T Consensus 90 l-pel~~~~~~~~~l~~~~ 107 (138)
T COG3105 90 L-PELSAKDNPFRNLLAEE 107 (138)
T ss_pred C-ccccccccHHHHHHHhh
Confidence 3 44555555566666554
No 11
>KOG0795|consensus
Probab=63.97 E-value=1.1e+02 Score=30.65 Aligned_cols=101 Identities=24% Similarity=0.303 Sum_probs=61.7
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---CCCCcchhHHHHHHHHHHHHHHHHHHHH
Q psy17511 125 PVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIE---DGNNFGVSIQEDILAEIQSVESEAAAFY 201 (466)
Q Consensus 125 ~v~~~~~g~v~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIE---DGNNFGVsIQeevl~el~~ve~~a~~~~ 201 (466)
.++++..-.|.-|++|+. ||+.-.+|+|- |.+|||-..--+ +. .+
T Consensus 105 ~~Lhp~a~svNiNkkIw~--------------------~Yf~~lvP~ivkpGDDgNygSta~cD-----------~~-CL 152 (262)
T KOG0795|consen 105 QVLHPYAPSVNINKKIWN--------------------MYFKELVPLIVKPGDDGNYGSTAVCD-----------IE-CL 152 (262)
T ss_pred cccccCCcccchhHHHHH--------------------HHHHHHhhhhcCCCCCCCcchHHHHH-----------HH-HH
Confidence 344444456788888875 56666777773 558899654333 11 12
Q ss_pred HHHHH-HHHHHHHHHHHHhcCCChhHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q psy17511 202 DQMSR-YFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEK 267 (466)
Q Consensus 202 d~i~k-Y~~~Rak~vsK~~KyPhVeDYr~av~E~Dek~y~~l~lVv~Fre~l~~eAE~ll~~~fP~K 267 (466)
..+|+ -| =||.|+.+.=.-+.++|..||...|.+..-.+- .....|+.|.++.-.|
T Consensus 153 Q~LSrRIH--yGKFVAEaKf~~~p~~Ye~aIkaqD~~~lm~~l--------t~~~vEe~vkkRv~~K 209 (262)
T KOG0795|consen 153 QSLSRRIH--YGKFVAEAKFQANPEAYEKAIKAQDREGLMKLL--------TFEAVEEKVKKRVEKK 209 (262)
T ss_pred HHHHHHhh--hhhhhhhhHhhcCHHHHHHHHHHhhHHHHHHHh--------hHHHHHHHHHHHHHHH
Confidence 22333 11 277787777778899999999999998754332 1233455555554443
No 12
>KOG2391|consensus
Probab=52.39 E-value=2.6e+02 Score=29.81 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q psy17511 136 SNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSR--YFVSRAK 213 (466)
Q Consensus 136 ~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~d~i~k--Y~~~Rak 213 (466)
.-.++.++.+.++-+...|-+.|+.++.|++-..-+.|+-.+--+.==-++-.-+.+-.-++++.=.+|.. |++.
T Consensus 247 G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~--- 323 (365)
T KOG2391|consen 247 GKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPLYKQILECYALDLAIEDAIYSLG--- 323 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHH---
Confidence 44678888899999999999999999999999777766644444432223333344444444444445544 4432
Q ss_pred HHHHHhcC--CChhHHHHHHHHhhHHHHHHHHhHHHHHH
Q psy17511 214 VISKVAKY--PHIADYRQAVKELDEKEYLSLWLVKEYVD 250 (466)
Q Consensus 214 ~vsK~~Ky--PhVeDYr~av~E~Dek~y~~l~lVv~Fre 250 (466)
|...- =.++.|.+-|+-+.++||+.-..+...|+
T Consensus 324 ---~~~r~G~i~l~~yLr~VR~lsReQF~~rat~qk~r~ 359 (365)
T KOG2391|consen 324 ---KSLRDGVIDLDQYLRHVRLLSREQFILRATMQKCRQ 359 (365)
T ss_pred ---HHHhcCeeeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 24688999999999999996665554444
No 13
>KOG2391|consensus
Probab=50.95 E-value=2e+02 Score=30.58 Aligned_cols=108 Identities=16% Similarity=0.229 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy17511 338 NEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSR--YFVSRAKV 415 (466)
Q Consensus 338 N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~~~~i~k--Y~~~Ra~~ 415 (466)
-.++.++.+.++-+...|-..|+.++.|++-..-+.|+-.+--+.==-++-.-+.+-.-++++.=.+|.. |++.-
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~--- 324 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGK--- 324 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHH---
Confidence 4789999999999999999999999999999776666644433321112222222333333333333332 33221
Q ss_pred HHHHhcC--CChHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy17511 416 ISKVAKY--PHIADYRQAVKELDEKEYLSLWLVLCEIRN 452 (466)
Q Consensus 416 vsK~~Ky--P~V~Dy~~av~e~Dek~~~~lr~~l~eiRn 452 (466)
...- =..+-|.+.|+.+..+||+ +|....-.|.
T Consensus 325 ---~~r~G~i~l~~yLr~VR~lsReQF~-~rat~qk~r~ 359 (365)
T KOG2391|consen 325 ---SLRDGVIDLDQYLRHVRLLSREQFI-LRATMQKCRQ 359 (365)
T ss_pred ---HHhcCeeeHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1111 2356699999999999987 4555555543
No 14
>PRK11677 hypothetical protein; Provisional
Probab=45.50 E-value=1.1e+02 Score=28.25 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q psy17511 381 VSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKEL 435 (466)
Q Consensus 381 VsVQeevl~el~~v~~~a~~~~~~i~kY~~~Ra~~vsK~~KyP~V~Dy~~av~e~ 435 (466)
+.-|.+.-.+|.+.+.+.+.+..++..+|..=|+++.++.+ ||+..-.-+
T Consensus 28 ~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~-----~Y~~Ly~Hl 77 (134)
T PRK11677 28 LRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAK-----DYRQLYQHM 77 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 35677888999999999999999999999999999999987 777665433
No 15
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.98 E-value=1e+02 Score=27.72 Aligned_cols=46 Identities=15% Similarity=0.390 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy17511 383 IQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVK 433 (466)
Q Consensus 383 VQeevl~el~~v~~~a~~~~~~i~kY~~~Ra~~vsK~~KyP~V~Dy~~av~ 433 (466)
=|.++-.+|.+.+.+.+.+..++..||..=|+++.++.+ ||+..-.
T Consensus 26 ~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~-----~Y~~l~~ 71 (128)
T PF06295_consen 26 KQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQ-----DYQKLYQ 71 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 367788999999999999999999999999999999987 6665544
No 16
>KOG1647|consensus
Probab=41.67 E-value=2.2e+02 Score=28.67 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=58.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511 131 NGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVS 210 (466)
Q Consensus 131 ~g~v~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~d~i~kY~~~ 210 (466)
.|+-++-.+|..+=+.--..+..|+|.|.. +++ +-.+|.+.+--.-
T Consensus 122 tgL~rgGqqv~~~r~~Y~kAve~LVelasL---------------------------------qts-f~~Lde~ik~TNr 167 (255)
T KOG1647|consen 122 TGLGRGGQQVARLRENYTKAVELLVELASL---------------------------------QTS-FRTLDEAIKVTNR 167 (255)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHH-HHHHHHHHHHHhh
Confidence 356666666666655555555555555544 332 4445555555566
Q ss_pred HHHHHHHHhcCCChhHHHHHH----HHhhHHHHHHHHhHHHHHHHHHHHHHH
Q psy17511 211 RAKVISKVAKYPHIADYRQAV----KELDEKEYLSLWLVKEYVDTVKSQAEE 258 (466)
Q Consensus 211 Rak~vsK~~KyPhVeDYr~av----~E~Dek~y~~l~lVv~Fre~l~~eAE~ 258 (466)
|--++.-++. |-++.-..+| .|+|..+|+.|+.|+..+++...++..
T Consensus 168 RVNAiEhvII-PrlenTi~YI~sELdE~eRedF~RLKKiQ~~K~~~~ek~~a 218 (255)
T KOG1647|consen 168 RVNAIEHVII-PRLENTIAYIVSELDELEREDFYRLKKIQAKKREAKEKADA 218 (255)
T ss_pred hhhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6666666665 6666543333 356667899999999999998777654
No 17
>PRK11677 hypothetical protein; Provisional
Probab=33.55 E-value=2.2e+02 Score=26.28 Aligned_cols=49 Identities=22% Similarity=0.416 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy17511 180 VSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKE 233 (466)
Q Consensus 180 VsIQeevl~el~~ve~~a~~~~d~i~kY~~~Rak~vsK~~KyPhVeDYr~av~E 233 (466)
+.=|-+.-++|.+.+.+...+..++..+|..=|+++.++.+ ||+..-.-
T Consensus 28 ~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~-----~Y~~Ly~H 76 (134)
T PRK11677 28 LRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAK-----DYRQLYQH 76 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 35677888999999999999999999999999999999985 88876443
No 18
>PLN02344 chorismate mutase
Probab=32.75 E-value=1.7e+02 Score=30.25 Aligned_cols=75 Identities=19% Similarity=0.404 Sum_probs=48.2
Q ss_pred CccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy17511 333 GPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKI----EDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSR- 407 (466)
Q Consensus 333 g~v~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkI----EDGNNFGVsVQeevl~el~~v~~~a~~~~~~i~k- 407 (466)
..|.-|++|+. ||+.-.+|++ +|| |+|-+.=-++. .+..+|+
T Consensus 134 ~~iNiN~~I~~--------------------~Y~~~ilP~~~~~Gdd~-NyGSta~cDi~------------cLQALSrR 180 (284)
T PLN02344 134 DSININKAIWD--------------------MYFNDLLPLLVKEGDDG-NYGSTAVCDLA------------CLQALSKR 180 (284)
T ss_pred cccchhHHHHH--------------------HHHHHhchhhcCCCCcc-ccHHHHHHHHH------------HHHHHHHH
Confidence 45777888775 4555556655 444 49977655531 1222343
Q ss_pred -HHHHHHHHHHHHhcCCChHHHHHHHHHhhHHHHHHH
Q psy17511 408 -YFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSL 443 (466)
Q Consensus 408 -Y~~~Ra~~vsK~~KyP~V~Dy~~av~e~Dek~~~~l 443 (466)
+| ||.|+.+.=.-.-+.|..+|...|.+....+
T Consensus 181 IHy---GKFVAEaKF~~~p~~y~~lI~a~D~dglm~l 214 (284)
T PLN02344 181 IHY---GKFVAEAKFRESPEEYEPAIRAQDADGLMKL 214 (284)
T ss_pred hhh---hhhhhHHHhhcCHHHHHHHHHhhCHHHHHHH
Confidence 22 6777776666677899999999998876554
No 19
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.37 E-value=1.9e+02 Score=25.98 Aligned_cols=44 Identities=16% Similarity=0.405 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q psy17511 182 IQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQA 230 (466)
Q Consensus 182 IQeevl~el~~ve~~a~~~~d~i~kY~~~Rak~vsK~~KyPhVeDYr~a 230 (466)
=|.+.-.+|...+.+...+...+..||..=|++++++.+ ||+..
T Consensus 26 ~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~-----~Y~~l 69 (128)
T PF06295_consen 26 KQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQ-----DYQKL 69 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 367888999999999999999999999999999999874 77765
No 20
>KOG0795|consensus
Probab=28.81 E-value=2.3e+02 Score=28.41 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=50.8
Q ss_pred CccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcc---CCCCCchhhHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy17511 333 GPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKI---EDGNNFGVSIQED--ILAEIQSVESEAAAFYDQMSR 407 (466)
Q Consensus 333 g~v~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkI---EDGNNFGVsVQee--vl~el~~v~~~a~~~~~~i~k 407 (466)
-.|.-|++|+. ||+.-.+|+| -|.+|||-..--+ ||.-|++ +
T Consensus 112 ~svNiNkkIw~--------------------~Yf~~lvP~ivkpGDDgNygSta~cD~~CLQ~LSr-------------R 158 (262)
T KOG0795|consen 112 PSVNINKKIWN--------------------MYFKELVPLIVKPGDDGNYGSTAVCDIECLQSLSR-------------R 158 (262)
T ss_pred cccchhHHHHH--------------------HHHHHHhhhhcCCCCCCCcchHHHHHHHHHHHHHH-------------H
Confidence 45788888875 4566667776 3557899765433 2322221 1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHhhHHHHHHH
Q psy17511 408 YFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSL 443 (466)
Q Consensus 408 Y~~~Ra~~vsK~~KyP~V~Dy~~av~e~Dek~~~~l 443 (466)
-| =||.|+.+.=.-+.++|..||...|.+....+
T Consensus 159 IH--yGKFVAEaKf~~~p~~Ye~aIkaqD~~~lm~~ 192 (262)
T KOG0795|consen 159 IH--YGKFVAEAKFQANPEAYEKAIKAQDREGLMKL 192 (262)
T ss_pred hh--hhhhhhhhHhhcCHHHHHHHHHHhhHHHHHHH
Confidence 11 27777777777889999999999999876544
No 21
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=28.71 E-value=5.2e+02 Score=28.25 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17511 341 LKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420 (466)
Q Consensus 341 I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~~~~i~kY~~~Ra~~vsK~~ 420 (466)
+.+++.-.+.+|.+|++.++..-.-.. .-|++--.-=+|++.+..-|.....-+.-+..++..++ ..|
T Consensus 58 ~~~vly~a~~hi~~L~~~Le~~d~~~~----~~~~~~~~~~~v~~~c~t~i~af~~i~~~L~~n~~~~v-~~~------- 125 (445)
T PF10428_consen 58 SLEVLYNANSHIDQLVEALERFDSSSR----EDEPSPRVNENVIRACQTCISAFKHICSLLRKNLDVFV-DNG------- 125 (445)
T ss_pred HHHHHhhHHhhHHHHHHHHHHHhcccc----cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-------
Confidence 344666667777777777666532110 00111111134555555555555544444444443332 122
Q ss_pred cCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHH
Q psy17511 421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCL 457 (466)
Q Consensus 421 KyP~V~Dy~~av~e~Dek~~~~lr~~l~eiRn~Ya~l 457 (466)
| .++++.+ |..|-..+.||||.|..+
T Consensus 126 ------D-~ryiRtl----ll~lygS~~Elrna~~~l 151 (445)
T PF10428_consen 126 ------D-VRYIRTL----LLMLYGSIMELRNAWSSL 151 (445)
T ss_pred ------C-hhHHHHH----HHHHHHHHHHHHHHHHHc
Confidence 1 1333333 567778889999999876
No 22
>PLN02344 chorismate mutase
Probab=27.56 E-value=2.1e+02 Score=29.53 Aligned_cols=63 Identities=21% Similarity=0.477 Sum_probs=40.8
Q ss_pred HHHHHHhcccc----cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHhh
Q psy17511 162 KMWITFMIPKI----EDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSR--YFVSRAKVISKVAKYPHIADYRQAVKELD 235 (466)
Q Consensus 162 kmWIqL~IPkI----EDGNNFGVsIQeevl~el~~ve~~a~~~~d~i~k--Y~~~Rak~vsK~~KyPhVeDYr~av~E~D 235 (466)
+||+.-.+|++ +|| |+|-+.=-|+ ..+..+|+ +| ||.|+.+.=.-.-++|..+|...|
T Consensus 144 ~~Y~~~ilP~~~~~Gdd~-NyGSta~cDi------------~cLQALSrRIHy---GKFVAEaKF~~~p~~y~~lI~a~D 207 (284)
T PLN02344 144 DMYFNDLLPLLVKEGDDG-NYGSTAVCDL------------ACLQALSKRIHY---GKFVAEAKFRESPEEYEPAIRAQD 207 (284)
T ss_pred HHHHHHhchhhcCCCCcc-ccHHHHHHHH------------HHHHHHHHHhhh---hhhhhHHHhhcCHHHHHHHHHhhC
Confidence 35566666766 444 5887654442 22344454 33 777776655567799999999999
Q ss_pred HHHHH
Q psy17511 236 EKEYL 240 (466)
Q Consensus 236 ek~y~ 240 (466)
.+..-
T Consensus 208 ~dglm 212 (284)
T PLN02344 208 ADGLM 212 (284)
T ss_pred HHHHH
Confidence 87653
No 23
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.48 E-value=3.8e+02 Score=29.84 Aligned_cols=112 Identities=17% Similarity=0.259 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511 135 PSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKV 214 (466)
Q Consensus 135 ~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~d~i~kY~~~Rak~ 214 (466)
.||..-...+..|+..|...+..+-...-+++++ .|.+++--==.++++-|...+....+||. +|-+.|.+-
T Consensus 25 ~~~~~w~~~~~~ir~ki~~a~~~~p~~~~~~~~l-----~~~~i~Y~~c~~i~~iL~~te~~skn~fG---~yss~rmk~ 96 (507)
T PF05600_consen 25 HCPKDWQKKLKAIREKINAAIQDMPEHDEIVQLL-----SGSYINYFHCKRIVEILKQTEADSKNIFG---RYSSQRMKD 96 (507)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhCcchHHHHHhc-----ccCCCCHHHHHHHHHHHhCCCccccceec---cccchhHHH
Confidence 3445555555555555555555544555566665 34444433234666777666655555554 566777777
Q ss_pred HHHHhc---------------------C------CChhHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q psy17511 215 ISKVAK---------------------Y------PHIADYRQAVKELDEKEYLSLWLVKEYVDTVKS 254 (466)
Q Consensus 215 vsK~~K---------------------y------PhVeDYr~av~E~Dek~y~~l~lVv~Fre~l~~ 254 (466)
+.++.| | .+|..+.+.+.|.+.|+.--.|-...++....+
T Consensus 97 W~~Iv~~yeK~n~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~ 163 (507)
T PF05600_consen 97 WQEIVKLYEKDNLYLAEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKK 163 (507)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 777766 2 456677777788888876666655555544433
No 24
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=26.33 E-value=3.3e+02 Score=25.42 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCChh-HHHHHHHHhhHHH
Q psy17511 186 ILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAK---------YPHIA-DYRQAVKELDEKE 238 (466)
Q Consensus 186 vl~el~~ve~~a~~~~d~i~kY~~~Rak~vsK~~K---------yPhVe-DYr~av~E~Dek~ 238 (466)
.-.+|...+.....+.+.+.+--..|+++-....+ +|.|+ ||-..+.++++.+
T Consensus 96 l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~ 158 (177)
T PF13870_consen 96 LKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELR 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 44456666666666667777766777666655443 89998 8999999998754
No 25
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=24.96 E-value=57 Score=30.23 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCcceeeeeeeeeeccccCCCCccCCcchHHHHH-----HHHHHHH
Q psy17511 12 QPSLTVGVTRRTFTNQKRFQPPSIMANGAHVKVK-----EYVDNVK 52 (466)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kv~-----~fk~~l~ 52 (466)
+--|-+|||..+||-..-+||++... +.....+ .|.+.|.
T Consensus 81 ~~~LVlGVt~q~I~lLh~lp~~~~~~-~~~~~~~~~~~~~f~~~L~ 125 (137)
T COG3190 81 DKRLVLGVTAQQITLLHTLPPNAPLE-ELPQTNDSAKSTAFSQALK 125 (137)
T ss_pred CEEEEEEeccceeEeeeeCCCCCchh-hcccccCccCCchHHHHHH
Confidence 44578999999999999999998852 3333334 7777775
No 26
>KOG1937|consensus
Probab=24.47 E-value=1e+03 Score=26.55 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hhHHHHHHHHhh---HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy17511 187 LAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPH---IADYRQAVKELD---EKEYLSLWLVKEYVDTVKSQAEELI 260 (466)
Q Consensus 187 l~el~~ve~~a~~~~d~i~kY~~~Rak~vsK~~KyPh---VeDYr~av~E~D---ek~y~~l~lVv~Fre~l~~eAE~ll 260 (466)
+.+|...|.+..+.-.+|.+--..++++-+++.+.|. ---|.+-|+|+| .|+=-.+-.|...++.|-++ ++.+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq-~ns~ 422 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQ-ENSE 422 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 7888899999999888999989999999999999998 778999999998 46666777777777777666 6666
Q ss_pred HhhhhhhHHHHHHhh
Q psy17511 261 LKGFPEKIVILNDLL 275 (466)
Q Consensus 261 ~~~fP~KI~eL~~lL 275 (466)
...+-+...--+++|
T Consensus 423 se~L~Rsfavtdell 437 (521)
T KOG1937|consen 423 SEALNRSFAVTDELL 437 (521)
T ss_pred HHHHhhhHHHHHHHH
Confidence 666666555555555
No 27
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.51 E-value=5.8e+02 Score=23.01 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=38.1
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17511 376 GNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAK 421 (466)
Q Consensus 376 GNNFGVsVQeevl~el~~v~~~a~~~~~~i~kY~~~Ra~~vsK~~K 421 (466)
|+.-++++=+..-+.|++.+.+..++.+++.+-=.+|..+-..+++
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566667888999999999999999999998888888877765
No 28
>TIGR02753 sodN superoxide dismutase, Ni. This superoxide dismutase uses nickel, rather than iron, manganese, copper, or zinc. Its gene is always accompanied by a gene for a required protease.
Probab=21.55 E-value=5.2e+02 Score=24.25 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=0.0
Q ss_pred cCCCcc-CCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy17511 330 LTNGPV-PSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMS-- 406 (466)
Q Consensus 330 ~p~g~v-~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~~~~i~-- 406 (466)
+|||.. |...+|.+ +.|+.-+..+.+. +|-...++.=|....--+..=|+.|+.....|+
T Consensus 24 iPCGIYDP~~Ari~a--~tv~~~~~ki~~l---------------~~~~~~~~~~~n~~~R~i~~KE~~A~~vk~~i~vl 86 (145)
T TIGR02753 24 GPCGVYDPASARISA--EAVLAMTKKLNAL---------------KPPSSLDADYQNTFSRFVAVKEEQAIETKKEISVL 86 (145)
T ss_pred CCCcCCCcHHHHHHH--HHHHHHHHHHHhc---------------cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHHHhcCCChHHHHHH
Q psy17511 407 --RYFVSRAKVISKVAKYPHIADYRQA 431 (466)
Q Consensus 407 --kY~~~Ra~~vsK~~KyP~V~Dy~~a 431 (466)
.|| |-||.++|-..
T Consensus 87 WtDYF-----------Kp~h~e~yP~l 102 (145)
T TIGR02753 87 WTDYF-----------KPPHLEQFPEL 102 (145)
T ss_pred HHHhc-----------CcccHhhchHH
No 29
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=20.65 E-value=1e+02 Score=24.80 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=22.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511 377 NNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVI 416 (466)
Q Consensus 377 NNFGVsVQeevl~el~~v~~~a~~~~~~i~kY~~~Ra~~v 416 (466)
|+||-.-+ +-+..|.+--.....+.+.+..||.+||.+=
T Consensus 1 ~~F~~~~~-~g~~~l~~~~~~~~~~~~~l~~~~keRa~lE 39 (91)
T PF00611_consen 1 MSFWSDLW-DGFEVLFKRLKQGIKLLEELASFFKERASLE 39 (91)
T ss_dssp TCTTSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555552 1122223333344457788899999999653
No 30
>COG3697 CitX Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) [Coenzyme metabolism / Lipid metabolism]
Probab=20.57 E-value=1.8e+02 Score=28.04 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=47.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHH
Q psy17511 131 NGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQED 185 (466)
Q Consensus 131 ~g~v~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQee 185 (466)
.|.|+.|..+...++.....|.+|.++.|-...|.+...++ -|+..=++|+-.
T Consensus 47 PGpIK~sa~~~~vfd~g~~ai~al~~~~~w~iv~~~~l~~~--TG~E~~~~i~ap 99 (182)
T COG3697 47 PGPIKTSAVLRRVFDIGVTAILALLAKQGWTIVEQAALVEA--TGPEAMLSIAAP 99 (182)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhccc--cCcceEEEecCc
Confidence 48999999999999999999999999999999999999884 688877777654
No 31
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=20.46 E-value=2e+02 Score=27.65 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCCChHHHHHHHHHhhHHHH
Q psy17511 382 SIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKV--------AKYPHIADYRQAVKELDEKEY 440 (466)
Q Consensus 382 sVQeevl~el~~v~~~a~~~~~~i~kY~~~Ra~~vsK~--------~KyP~V~Dy~~av~e~Dek~~ 440 (466)
++++++-+++.+++.+..... .-+|..|+.+++++ ..+|.+. +|.+.|+.-.
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~---~p~y~kR~~II~gIP~FW~~vl~n~~~~~----~I~~~D~~~L 61 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKK---KPLFEKRQEIIEKIPGFWADTLRRHPALS----YLVPEDIDIL 61 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHh---CHHHHHHHHHHhcCccHHHHHHHcCcccc----ccCHHHHHHH
Confidence 467788888888888776654 66899999999875 3466654 5678888544
Done!