Query psy17511
Match_columns 466
No_of_seqs 246 out of 296
Neff 5.2
Searched_HMMs 29240
Date Sat Aug 17 00:27:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1avo_B 11S regulator; proteaso 100.0 1.2E-53 3.9E-58 385.0 18.8 131 334-464 1-131 (140)
2 1avo_B 11S regulator; proteaso 100.0 3.5E-47 1.2E-51 342.8 18.6 132 133-264 1-132 (140)
3 1avo_A 11S regulator; proteaso 99.6 7.3E-16 2.5E-20 120.2 5.4 58 36-93 3-60 (60)
4 1avo_A 11S regulator; proteaso 99.4 4.4E-13 1.5E-17 104.5 6.1 52 243-294 9-60 (60)
5 1yar_O Proteasome activator pr 96.9 0.01 3.4E-07 55.4 12.1 122 337-459 69-223 (237)
6 1yar_O Proteasome activator pr 96.0 0.016 5.6E-07 54.0 7.8 91 137-227 70-174 (237)
7 3c1q_A General secretion pathw 19.6 1.6E+02 0.0056 23.9 5.4 59 363-421 48-115 (123)
8 3zcc_A HAMP, osmolarity sensor 16.6 93 0.0032 23.7 3.0 42 379-420 26-68 (114)
9 2d1l_A Metastasis suppressor p 16.5 7E+02 0.024 23.8 10.1 35 427-461 175-209 (253)
10 3c1q_A General secretion pathw 15.0 2.5E+02 0.0085 22.8 5.4 57 164-220 50-115 (123)
No 1
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=100.00 E-value=1.2e-53 Score=385.05 Aligned_cols=131 Identities=42% Similarity=0.755 Sum_probs=129.8
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511 334 PVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRA 413 (466)
Q Consensus 334 ~v~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~~~~i~kY~~~Ra 413 (466)
+++||++|++|++.|||||++|+|.|++|+|||+|+||||||||||||+|||+|+++|++++++|++|+|++++||++||
T Consensus 1 ~v~~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra 80 (140)
T 1avo_B 1 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERG 80 (140)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Q psy17511 414 KVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFM 464 (466)
Q Consensus 414 ~~vsK~~KyP~V~Dy~~av~e~Dek~~~~lr~~l~eiRn~Ya~l~DiI~k~ 464 (466)
++|+|++|||||+||+++|+|+|+++|++||++++||||+|+++||+|.||
T Consensus 81 ~~v~K~~k~p~v~Dy~~~v~e~Dek~~~~lr~~~~elRn~Y~~l~D~i~KN 131 (140)
T 1avo_B 81 DAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKN 131 (140)
T ss_dssp HHHHHHHHCTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998
No 2
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=100.00 E-value=3.5e-47 Score=342.81 Aligned_cols=132 Identities=39% Similarity=0.725 Sum_probs=128.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511 133 PVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRA 212 (466)
Q Consensus 133 ~v~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~d~i~kY~~~Ra 212 (466)
+++||++|+++++.|||||++|+|.|++|+|||||+||||||||||||+|||+|+++|++++++|++|+|+|++||++||
T Consensus 1 ~v~~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra 80 (140)
T 1avo_B 1 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERG 80 (140)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q psy17511 213 KVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGF 264 (466)
Q Consensus 213 k~vsK~~KyPhVeDYr~av~E~Dek~y~~l~lVv~Fre~l~~eAE~ll~~~f 264 (466)
++|+|++|||||+||+++|+|+|+++|++||++..--++.+...-+++.+.|
T Consensus 81 ~~v~K~~k~p~v~Dy~~~v~e~Dek~~~~lr~~~~elRn~Y~~l~D~i~KN~ 132 (140)
T 1avo_B 81 DAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNF 132 (140)
T ss_dssp HHHHHHHHCTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999988888887665
No 3
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=99.59 E-value=7.3e-16 Score=120.20 Aligned_cols=58 Identities=21% Similarity=0.408 Sum_probs=56.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcccCCCCccchhhccccCC
Q psy17511 36 MANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI 93 (466)
Q Consensus 36 m~~~~~~kv~~fk~~l~~~Ae~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~ni 93 (466)
|+++++.+|+.||++|+++||++|+++||+||+|||+||++|+||++||+++|+++||
T Consensus 3 ~~~~~~~kv~~fk~~l~~eAE~ll~~~fP~KI~eln~LL~~~~f~~~dls~l~~~l~I 60 (60)
T 1avo_A 3 VQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI 60 (60)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSGGGCCSCTTSSCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHcccccccccHHHhccccCC
Confidence 6778999999999999999999999999999999999999999999999999999986
No 4
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=99.38 E-value=4.4e-13 Score=104.49 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCCcccchhhccccCC
Q psy17511 243 WLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI 294 (466)
Q Consensus 243 ~lVv~Fre~l~~eAE~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~~i 294 (466)
..|..|+++|+++||++|.++||+||+|||+||++++||+++|+++|+++||
T Consensus 9 ~kv~~fk~~l~~eAE~ll~~~fP~KI~eln~LL~~~~f~~~dls~l~~~l~I 60 (60)
T 1avo_A 9 AKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI 60 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSGGGCCSCTTSSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHcccccccccHHHhccccCC
Confidence 4599999999999999999999999999999999999999999999999886
No 5
>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O
Probab=96.89 E-value=0.01 Score=55.37 Aligned_cols=122 Identities=19% Similarity=0.299 Sum_probs=89.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHH---------------H
Q psy17511 337 SNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAA---------------F 401 (466)
Q Consensus 337 ~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~---------------~ 401 (466)
..+.++.++.....++..+--...++++-|...||....-+|.||+||.-||+.|.+++.+.-. +
T Consensus 69 vP~~v~~~L~~~Q~~~h~iY~~AEtIRTVIa~RIPElK~EDNLGV~VQ~aVLK~id~le~K~LGs~~~~g~Gg~p~~aGm 148 (237)
T 1yar_O 69 SPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGM 148 (237)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCHHHHHHHHHHHHHHHHHHTTSCCSSBCCTTCBCSSSCT
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhhhhheeeeecccccccccccHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCchhhH
Confidence 3578899999999999999999999999999999999999999999999999999999876533 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHH-----------HHHHHHHhhHHHHHHH-------HHHHHHHHhhHHHHHH
Q psy17511 402 YDQMSRYFVSRAKVISKVAKYPHIAD-----------YRQAVKELDEKEYLSL-------WLVLCEIRNRYLCLKT 459 (466)
Q Consensus 402 ~~~i~kY~~~Ra~~vsK~~KyP~V~D-----------y~~av~e~Dek~~~~l-------r~~l~eiRn~Ya~l~D 459 (466)
+ ....||.+|+.+=.|+.--|.-+| -.--+++.|......+ --.+...-|.|++=.-
T Consensus 149 y-a~ReYl~ARgsVEdKvLGk~~dd~~ktKggS~sPSvLlELrQiDaDallkvELsa~qlsT~iRsfiNAYalNWK 223 (237)
T 1yar_O 149 Y-ALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWK 223 (237)
T ss_dssp T-HHHHHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHhhccchHHHhcCCCCcccccccCCCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1 347899999999999964333332 1223445554443332 2335556688886543
No 6
>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O
Probab=96.01 E-value=0.016 Score=53.96 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHH--------------H
Q psy17511 137 NEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFY--------------D 202 (466)
Q Consensus 137 N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~--------------d 202 (466)
...++.++.....+++.+--...+|+.-|...||..-.-+|.||+||.-||+-|..+|.+.-..- =
T Consensus 70 P~~v~~~L~~~Q~~~h~iY~~AEtIRTVIa~RIPElK~EDNLGV~VQ~aVLK~id~le~K~LGs~~~~g~Gg~p~~aGmy 149 (237)
T 1yar_O 70 PEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMY 149 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCHHHHHHHHHHHHHHHHHHTTSCCSSBCCTTCBCSSSCTT
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhheeeeecccccccccccHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCchhhHH
Confidence 46788999999999999999999999999999999999999999999999999988887632211 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHH
Q psy17511 203 QMSRYFVSRAKVISKVAKYPHIADY 227 (466)
Q Consensus 203 ~i~kY~~~Rak~vsK~~KyPhVeDY 227 (466)
....||.+|+.+=.|+..-|.=+|-
T Consensus 150 a~ReYl~ARgsVEdKvLGk~~dd~~ 174 (237)
T 1yar_O 150 ALREYLSARSTVEDKLLGSVDAESG 174 (237)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhhccchHHHhcCCCCcccc
Confidence 4677999999999999886655543
No 7
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=19.57 E-value=1.6e+02 Score=23.91 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=39.5
Q ss_pred HHHHHHhcCccCCCCCchhhHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17511 363 KMWITFMIPKIEDGNNFGVSIQED-------ILAEIQS--VESEAAAFYDQMSRYFVSRAKVISKVAK 421 (466)
Q Consensus 363 k~WI~l~IPkIEDGNNFGVsVQee-------vl~el~~--v~~~a~~~~~~i~kY~~~Ra~~vsK~~K 421 (466)
+..+.-..-.++.|..|..+.... +..-+.. .-......+..++.||..+.+.-.|+..
T Consensus 48 ~~~l~~i~~~l~~G~sls~Al~~~~~~fp~~~~~mi~~GE~sG~L~~~L~~la~~~e~~~~~~~~~~~ 115 (123)
T 3c1q_A 48 RTMLVAVRAKVTEGYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQ 115 (123)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHTTCTTTSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHhccccCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444557788887777652 2333433 3344678899999999999999888765
No 8
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=16.62 E-value=93 Score=23.70 Aligned_cols=42 Identities=7% Similarity=0.105 Sum_probs=24.9
Q ss_pred chhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17511 379 FGVSIQEDI-LAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420 (466)
Q Consensus 379 FGVsVQeev-l~el~~v~~~a~~~~~~i~kY~~~Ra~~vsK~~ 420 (466)
|.+.+...- -.|+..+-.....+.+.+......+...++.++
T Consensus 26 ~~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~s 68 (114)
T 3zcc_A 26 LEAEVPHQNRADEIGILAKSIERLRRSLKQLADDGTLLMAGVS 68 (114)
T ss_dssp TTCCCTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 554444333 446666666666666666666666666665554
No 9
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=16.46 E-value=7e+02 Score=23.85 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=29.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHh
Q psy17511 427 DYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461 (466)
Q Consensus 427 Dy~~av~e~Dek~~~~lr~~l~eiRn~Ya~l~DiI 461 (466)
|.-.--.++++-+=-.+|.+|.|=|..||.+.|.+
T Consensus 175 ~v~~~~~~le~~~~~~~r~AL~EERrRycflv~~l 209 (253)
T 2d1l_A 175 DVNDKYLLLEETEKQAVRKALIEERGRFCTFISML 209 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55455577888888999999999999999999874
No 10
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=15.01 E-value=2.5e+02 Score=22.77 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=37.4
Q ss_pred HHHHhcccccCCCCcchhHHHH-------HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17511 164 WITFMIPKIEDGNNFGVSIQED-------ILAEIQSVE--SEAAAFYDQMSRYFVSRAKVISKVAK 220 (466)
Q Consensus 164 WIqL~IPkIEDGNNFGVsIQee-------vl~el~~ve--~~a~~~~d~i~kY~~~Rak~vsK~~K 220 (466)
.++-..-.|+.|..|.-+.... ++.-|..-| ......+..++.||..+.+.-.|+..
T Consensus 50 ~l~~i~~~l~~G~sls~Al~~~~~~fp~~~~~mi~~GE~sG~L~~~L~~la~~~e~~~~~~~~~~~ 115 (123)
T 3c1q_A 50 MLVAVRAKVTEGYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQ 115 (123)
T ss_dssp HHHHHHHHHHTTCCHHHHHTTCTTTSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHhccccCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344557788888777662 233343333 33557788999999999999888765
Done!